Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63893.t1 | XP_013454422.1 | 73.5 | 385 | 97 | 2 | 1 | 380 | 1 | 385 | 3.30E-82 | 315.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63893.t1 | A0A072UH69 | 73.5 | 385 | 97 | 2 | 1 | 380 | 1 | 385 | 2.4e-82 | 315.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene63893 | 0.823414 | 1.40E-53 | -1.69E-46 |
| MS.gene049382 | MS.gene63893 | 0.802914 | 4.48E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene63893 | 0.803796 | 2.94E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene63893 | 0.811869 | 5.64E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene63893 | 0.812816 | 3.50E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene63893 | 0.826068 | 3.32E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene63893 | 0.837854 | 4.06E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene63893 | 0.83865 | 2.54E-57 | -1.69E-46 |
| MS.gene050330 | MS.gene63893 | -0.815767 | 7.81E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene63893 | -0.823531 | 1.32E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene63893 | 0.832174 | 1.10E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene63893 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene050987 | MS.gene63893 | 0.801405 | 9.14E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene63893 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene051349 | MS.gene63893 | 0.81032 | 1.22E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene63893 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene051633 | MS.gene63893 | 0.82161 | 3.68E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene63893 | 0.820274 | 7.48E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene63893 | 0.830214 | 3.33E-55 | -1.69E-46 |
| MS.gene052286 | MS.gene63893 | 0.851281 | 9.83E-61 | -1.69E-46 |
| MS.gene052302 | MS.gene63893 | 0.831889 | 1.29E-55 | -1.69E-46 |
| MS.gene052309 | MS.gene63893 | -0.851329 | 9.53E-61 | -1.69E-46 |
| MS.gene052358 | MS.gene63893 | -0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene63893 | 0.831153 | 1.96E-55 | -1.69E-46 |
| MS.gene052600 | MS.gene63893 | 0.81832 | 2.08E-52 | -1.69E-46 |
| MS.gene053080 | MS.gene63893 | 0.823584 | 1.28E-53 | -1.69E-46 |
| MS.gene053216 | MS.gene63893 | 0.829691 | 4.47E-55 | -1.69E-46 |
| MS.gene054537 | MS.gene63893 | 0.806608 | 7.57E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene63893 | 0.83178 | 1.38E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene63893 | -0.812588 | 3.93E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene63893 | 0.813821 | 2.11E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene63893 | 0.816982 | 4.18E-52 | -1.69E-46 |
| MS.gene056643 | MS.gene63893 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene63893 | 0.801511 | 8.70E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene63893 | 0.821033 | 5.01E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene63893 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene63893 | 0.874597 | 5.96E-68 | -1.69E-46 |
| MS.gene057079 | MS.gene63893 | 0.815218 | 1.03E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene63893 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene63893 | 0.806091 | 9.73E-50 | -1.69E-46 |
| MS.gene057555 | MS.gene63893 | 0.838678 | 2.49E-57 | -1.69E-46 |
| MS.gene05795 | MS.gene63893 | 0.828323 | 9.58E-55 | -1.69E-46 |
| MS.gene058200 | MS.gene63893 | 0.821807 | 3.32E-53 | -1.69E-46 |
| MS.gene058201 | MS.gene63893 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene63893 | 0.811163 | 8.03E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene63893 | 0.807787 | 4.26E-50 | -1.69E-46 |
| MS.gene058798 | MS.gene63893 | 0.808858 | 2.52E-50 | -1.69E-46 |
| MS.gene059317 | MS.gene63893 | 0.826945 | 2.05E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene63893 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene059569 | MS.gene63893 | 0.802358 | 5.83E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene63893 | 0.800453 | 1.43E-48 | -1.69E-46 |
| MS.gene060165 | MS.gene63893 | 0.826848 | 2.17E-54 | -1.69E-46 |
| MS.gene060297 | MS.gene63893 | 0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene63893 | 0.812319 | 4.50E-51 | -1.69E-46 |
| MS.gene060619 | MS.gene63893 | 0.827537 | 1.48E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene63893 | -0.810226 | 1.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63893.t1 | MTR_5g094850 | 87.216 | 485 | 52 | 4 | 1 | 479 | 1 | 481 | 0.0 | 776 |
| MS.gene63893.t1 | MTR_5g094850 | 83.071 | 508 | 53 | 4 | 1 | 479 | 1 | 504 | 0.0 | 765 |
| MS.gene63893.t1 | MTR_5g094960 | 57.388 | 467 | 145 | 5 | 1 | 450 | 3 | 432 | 4.67e-156 | 452 |
| MS.gene63893.t1 | MTR_5g094990 | 56.144 | 472 | 144 | 7 | 1 | 450 | 3 | 433 | 1.16e-136 | 402 |
| MS.gene63893.t1 | MTR_5g095390 | 56.701 | 485 | 88 | 15 | 1 | 479 | 1 | 369 | 1.74e-135 | 395 |
| MS.gene63893.t1 | MTR_5g094950 | 43.407 | 546 | 179 | 9 | 1 | 448 | 3 | 516 | 7.78e-97 | 303 |
| MS.gene63893.t1 | MTR_5g094910 | 42.094 | 468 | 132 | 10 | 1 | 450 | 3 | 349 | 3.94e-90 | 280 |
| MS.gene63893.t1 | MTR_5g094920 | 40.444 | 586 | 191 | 17 | 1 | 479 | 3 | 537 | 7.07e-87 | 276 |
| MS.gene63893.t1 | MTR_5g094970 | 46.823 | 299 | 94 | 4 | 61 | 295 | 8 | 305 | 2.01e-56 | 191 |
| MS.gene63893.t1 | MTR_5g095050 | 36.181 | 398 | 156 | 11 | 2 | 301 | 4 | 401 | 6.00e-44 | 163 |
| MS.gene63893.t1 | MTR_5g095370 | 37.500 | 240 | 87 | 8 | 2 | 241 | 4 | 180 | 1.01e-25 | 105 |
| MS.gene63893.t1 | MTR_5g077500 | 46.061 | 165 | 77 | 3 | 149 | 304 | 96 | 257 | 8.64e-25 | 103 |
| MS.gene63893.t1 | MTR_5g095400 | 45.270 | 148 | 66 | 3 | 21 | 164 | 7 | 143 | 3.77e-21 | 96.7 |
| MS.gene63893.t1 | MTR_5g095310 | 45.455 | 132 | 58 | 2 | 25 | 153 | 2 | 122 | 5.23e-19 | 89.0 |
| MS.gene63893.t1 | MTR_5g095430 | 43.056 | 144 | 67 | 3 | 25 | 164 | 2 | 134 | 8.02e-19 | 89.7 |
| MS.gene63893.t1 | MTR_5g095360 | 51.250 | 80 | 38 | 1 | 67 | 145 | 7 | 86 | 3.17e-15 | 72.8 |
| MS.gene63893.t1 | MTR_1g071620 | 41.958 | 143 | 64 | 5 | 158 | 289 | 41 | 175 | 1.45e-12 | 67.4 |
| MS.gene63893.t1 | MTR_1g071620 | 42.609 | 115 | 50 | 3 | 69 | 167 | 1 | 115 | 9.74e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 87 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGATCATCTTGATTTAT+TGG | 0.203669 | 5.1:+75946237 | None:intergenic |
| CTTGTTAGGCTTTGTGGAAT+TGG | 0.253558 | 5.1:+75947235 | None:intergenic |
| AACAAAGATTGTTGAATTAG+AGG | 0.277435 | 5.1:-75946796 | MS.gene63893:CDS |
| TAAGGTTAAAATTGAAGAAT+TGG | 0.289099 | 5.1:-75946613 | MS.gene63893:CDS |
| TGAATTAGAGAGTAAGGTTT+TGG | 0.290330 | 5.1:-75946691 | MS.gene63893:CDS |
| TTCAAGCTTGTTAGGCTTTG+TGG | 0.304052 | 5.1:+75947229 | None:intergenic |
| AAATGCTTTGGATGGACTTA+AGG | 0.315634 | 5.1:-75946631 | MS.gene63893:CDS |
| TGGTGACCCAGGTTCAGTTT+TGG | 0.318302 | 5.1:+75947265 | None:intergenic |
| TCGGGCTTAGATGCCTCTAT+TGG | 0.322418 | 5.1:-75946423 | MS.gene63893:CDS |
| TGATAGTGTTGAAGCTGTTT+TGG | 0.323247 | 5.1:-75947147 | MS.gene63893:CDS |
| CATTTAAAGAAAGCTAGTTT+TGG | 0.330754 | 5.1:-75944614 | MS.gene63893:CDS |
| GGAGACAGTAAAGAAGAATT+TGG | 0.339017 | 5.1:-75946589 | MS.gene63893:CDS |
| GTCTATTCATGATCTTGTTA+TGG | 0.368869 | 5.1:-75947201 | MS.gene63893:CDS |
| AGAAAAGAAGAACAATGAAT+TGG | 0.369477 | 5.1:-75946883 | MS.gene63893:CDS |
| GTTGCAACAAAGCTTTGAAA+TGG | 0.369757 | 5.1:-75947087 | MS.gene63893:CDS |
| GAGAGGAAATTTGTGAGAAA+GGG | 0.390161 | 5.1:-75946989 | MS.gene63893:CDS |
| GAGGAATGAAAGCAGCAAAT+TGG | 0.390389 | 5.1:-75946550 | MS.gene63893:CDS |
| CAAGATGATCATTACACTCT+TGG | 0.393009 | 5.1:-75946228 | MS.gene63893:CDS |
| CTCATTGTTGCCACCAATAG+AGG | 0.396366 | 5.1:+75946410 | None:intergenic |
| GGAGGAAGATGACATTGAAT+TGG | 0.407668 | 5.1:-75946736 | MS.gene63893:CDS |
| AGAGAGGAAATTTGTGAGAA+AGG | 0.411748 | 5.1:-75946990 | MS.gene63893:CDS |
| GACTGGTGAATTAGAGAGTA+AGG | 0.418061 | 5.1:-75946697 | MS.gene63893:CDS |
| AGCCGGTGGAAGAGTGAAAC+TGG | 0.434903 | 5.1:-75944708 | MS.gene63893:CDS |
| GACTTGTCTTCAAGCTTGTT+AGG | 0.440389 | 5.1:+75947221 | None:intergenic |
| TCGTCCTCGTTATCTTCAAA+AGG | 0.448253 | 5.1:+75946315 | None:intergenic |
| TCATCTTGATTTATTGGTAA+AGG | 0.453360 | 5.1:+75946243 | None:intergenic |
| GCCAAGTTCATCAGCGGCAC+TGG | 0.467989 | 5.1:-75944570 | MS.gene63893:CDS |
| TTCCAGTTTCACTCTTCCAC+CGG | 0.474751 | 5.1:+75944706 | None:intergenic |
| GGTTGAAATTAAGAATTTGA+AGG | 0.477261 | 5.1:-75946859 | MS.gene63893:CDS |
| GGCTTTGTGGAATTGGAACC+TGG | 0.477680 | 5.1:+75947242 | None:intergenic |
| GATGCTCAAGGTTCATCATC+AGG | 0.480745 | 5.1:-75946165 | MS.gene63893:intron |
| ATGCAACCCAAAACTGAACC+TGG | 0.480822 | 5.1:-75947272 | MS.gene63893:CDS |
| GGTTAAAATTGAAGAATTGG+AGG | 0.482777 | 5.1:-75946610 | MS.gene63893:CDS |
| GCCAGTGCCGCTGATGAACT+TGG | 0.489599 | 5.1:+75944569 | None:intergenic |
| TTTGACCGTGTCAACTGCAT+TGG | 0.491729 | 5.1:+75944523 | None:intergenic |
| CATCGTCGTCGTCGTCATCA+AGG | 0.492320 | 5.1:+75944663 | None:intergenic |
| GGCTTAGATGCCTCTATTGG+TGG | 0.497178 | 5.1:-75946420 | MS.gene63893:CDS |
| AAAGAAGAACAATGAATTGG+AGG | 0.497575 | 5.1:-75946880 | MS.gene63893:CDS |
| GCTTAGAGAGGAGTTTCACT+TGG | 0.499506 | 5.1:-75947054 | MS.gene63893:CDS |
| TTCACTTGGAGAGACTTTCA+AGG | 0.504313 | 5.1:-75947040 | MS.gene63893:CDS |
| TCCACTTCTACTTCCTCCGA+TGG | 0.519389 | 5.1:-75944470 | MS.gene63893:CDS |
| ACTACGTGGAACTTGTCAAT+GGG | 0.522509 | 5.1:-75947177 | MS.gene63893:CDS |
| TACTACGTGGAACTTGTCAA+TGG | 0.523079 | 5.1:-75947178 | MS.gene63893:CDS |
| GTCACCGAGCAAAGGGATCA+AGG | 0.524366 | 5.1:-75946187 | MS.gene63893:CDS |
| GAGGAAGATGACATTGAATT+GGG | 0.529053 | 5.1:-75946735 | MS.gene63893:CDS |
| CATGTCTCGATAATCTTACA+AGG | 0.529060 | 5.1:-75944445 | MS.gene63893:CDS |
| GCATCCTTGATCCCTTTGCT+CGG | 0.529843 | 5.1:+75946183 | None:intergenic |
| GTACTCAGTCACCGAGCAAA+GGG | 0.531835 | 5.1:-75946194 | MS.gene63893:CDS |
| TCTATTGGTGGCAACAATGA+GGG | 0.540187 | 5.1:-75946408 | MS.gene63893:CDS |
| TCCTCGCTCTCTTCAGAACT+AGG | 0.540500 | 5.1:+75946360 | None:intergenic |
| TCTTCAGAACTAGGAACCAC+TGG | 0.540888 | 5.1:+75946369 | None:intergenic |
| CTCTATTGGTGGCAACAATG+AGG | 0.543509 | 5.1:-75946409 | MS.gene63893:CDS |
| TTGGAACCTGGTGGTGACCC+AGG | 0.547983 | 5.1:+75947254 | None:intergenic |
| GGAGAGATTAAAGCTTAGAG+AGG | 0.551503 | 5.1:-75947066 | MS.gene63893:CDS |
| TCACTTGGAGAGACTTTCAA+GGG | 0.554056 | 5.1:-75947039 | MS.gene63893:CDS |
| TTTGGAGTTGACGAAGTCAA+AGG | 0.554284 | 5.1:-75946673 | MS.gene63893:CDS |
| GATAACGAGGACGAGAATGC+TGG | 0.561580 | 5.1:-75946306 | MS.gene63893:CDS |
| GGAGCCTTCTGCTGATCCAG+TGG | 0.561757 | 5.1:-75946385 | MS.gene63893:CDS |
| CAAAGCCTCAAGTAATGTCT+CGG | 0.571102 | 5.1:+75946509 | None:intergenic |
| GATGATCAATCTATGTCTCA+AGG | 0.574541 | 5.1:-75944641 | MS.gene63893:CDS |
| TGACGAAGTCAAAGGAAAAG+TGG | 0.576702 | 5.1:-75946665 | MS.gene63893:CDS |
| ACTGAACCTGGGTCACCACC+AGG | 0.584855 | 5.1:-75947260 | MS.gene63893:CDS |
| AGTACTCAGTCACCGAGCAA+AGG | 0.588934 | 5.1:-75946195 | MS.gene63893:CDS |
| ACCATCGGAGGAAGTAGAAG+TGG | 0.600712 | 5.1:+75944469 | None:intergenic |
| TGGCAACGATGAGTGAGTTG+AGG | 0.602280 | 5.1:-75946569 | MS.gene63893:CDS |
| CGAGGAAGAGCGTGTTCATG+TGG | 0.602379 | 5.1:-75946343 | MS.gene63893:CDS |
| CTATTGGTGGCAACAATGAG+GGG | 0.607900 | 5.1:-75946407 | MS.gene63893:CDS |
| CATTACTTGAGGCTTTGAAG+AGG | 0.609257 | 5.1:-75946503 | MS.gene63893:CDS |
| CATAAATGACATTGTTGACG+AGG | 0.611921 | 5.1:-75946271 | MS.gene63893:CDS |
| TGAAAGAGTAACAACGTTGG+AGG | 0.614401 | 5.1:-75946463 | MS.gene63893:CDS |
| ATTTGCCAATGCAGTTGACA+CGG | 0.617434 | 5.1:-75944528 | MS.gene63893:CDS |
| TCCTAGTTCTGAAGAGAGCG+AGG | 0.618367 | 5.1:-75946361 | MS.gene63893:CDS |
| TGAAAGCAGCAAATTGGCAG+AGG | 0.619230 | 5.1:-75946544 | MS.gene63893:CDS |
| TGCAACCCAAAACTGAACCT+GGG | 0.623349 | 5.1:-75947271 | MS.gene63893:CDS |
| AAAGGGATCAAGGATGCTCA+AGG | 0.628139 | 5.1:-75946177 | MS.gene63893:CDS |
| CGAAGCCGAGACATTACTTG+AGG | 0.631250 | 5.1:-75946514 | MS.gene63893:CDS |
| GTCTGAATTTAAGAAAAGAG+AGG | 0.635967 | 5.1:-75947006 | MS.gene63893:CDS |
| ATTATCGAGACATGAACCAT+CGG | 0.637556 | 5.1:+75944454 | None:intergenic |
| GGAACCACTGGATCAGCAGA+AGG | 0.640019 | 5.1:+75946381 | None:intergenic |
| ATCGGAGGAAGTAGAAGTGG+AGG | 0.645940 | 5.1:+75944472 | None:intergenic |
| TGAAGAGCCAAGTTCATCAG+CGG | 0.677802 | 5.1:-75944576 | MS.gene63893:CDS |
| GAGGGATATGAGACTCAGAG+AGG | 0.679885 | 5.1:-75947120 | MS.gene63893:CDS |
| TATTGGTGGCAACAATGAGG+GGG | 0.686512 | 5.1:-75946406 | MS.gene63893:CDS |
| ATCGAGACATGAACCATCGG+AGG | 0.699092 | 5.1:+75944457 | None:intergenic |
| GCGTGAAAGAGTAACAACGT+TGG | 0.738449 | 5.1:-75946466 | MS.gene63893:CDS |
| GATCTTGTTATGGTACTACG+TGG | 0.742209 | 5.1:-75947191 | MS.gene63893:CDS |
| TTTGTGGAATTGGAACCTGG+TGG | 0.802029 | 5.1:+75947245 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAACTTGAAAAATA+AGG | + | chr5.1:75946901-75946920 | None:intergenic | 15.0% |
| !! | AAAGAAGATTAAGAAAAAAT+GGG | - | chr5.1:75944933-75944952 | MS.gene63893:intron | 15.0% |
| !! | AATAATTCATAGTTATTAAG+GGG | - | chr5.1:75946424-75946443 | MS.gene63893:CDS | 15.0% |
| !! | GAATAATTCATAGTTATTAA+GGG | - | chr5.1:75946423-75946442 | MS.gene63893:CDS | 15.0% |
| !! | TAAAGAAGATTAAGAAAAAA+TGG | - | chr5.1:75944932-75944951 | MS.gene63893:intron | 15.0% |
| !! | AAAACTTGAAAAATAAGGTA+CGG | + | chr5.1:75946896-75946915 | None:intergenic | 20.0% |
| !! | AAATATAGTGAAAATGTGTT+TGG | - | chr5.1:75946501-75946520 | MS.gene63893:CDS | 20.0% |
| !! | AATGAAAAACAAACAAAATC+AGG | - | chr5.1:75946695-75946714 | MS.gene63893:CDS | 20.0% |
| !! | AATTAAACTTCTATCAAAAG+AGG | + | chr5.1:75945889-75945908 | None:intergenic | 20.0% |
| !! | ACCAGGATATTATATTATTA+TGG | - | chr5.1:75945790-75945809 | MS.gene63893:intron | 20.0% |
| !! | CCAGGATATTATATTATTAT+GGG | - | chr5.1:75945791-75945810 | MS.gene63893:intron | 20.0% |
| !! | GGAATAATTCATAGTTATTA+AGG | - | chr5.1:75946422-75946441 | MS.gene63893:CDS | 20.0% |
| !! | TAAGGTTAAAATTGAAGAAT+TGG | - | chr5.1:75945077-75945096 | MS.gene63893:intron | 20.0% |
| !! | TAATGATCATCTTGATTTAT+TGG | + | chr5.1:75945456-75945475 | None:intergenic | 20.0% |
| !! | TTCAAAGTACAAACAATAAA+TGG | + | chr5.1:75946142-75946161 | None:intergenic | 20.0% |
| !!! | AAACACATTTTGTTTTTCTT+AGG | - | chr5.1:75946719-75946738 | MS.gene63893:CDS | 20.0% |
| ! | AACAAAGATTGTTGAATTAG+AGG | - | chr5.1:75944894-75944913 | MS.gene63893:intron | 25.0% |
| ! | AATGATTATTCACTTGTTCA+TGG | - | chr5.1:75946473-75946492 | MS.gene63893:CDS | 25.0% |
| ! | AGAAAAGAAGAACAATGAAT+TGG | - | chr5.1:75944807-75944826 | MS.gene63893:intron | 25.0% |
| ! | CCCATAATAATATAATATCC+TGG | + | chr5.1:75945794-75945813 | None:intergenic | 25.0% |
| ! | GGTTGAAATTAAGAATTTGA+AGG | - | chr5.1:75944831-75944850 | MS.gene63893:intron | 25.0% |
| ! | TATCAGATAATATATACAGC+AGG | + | chr5.1:75946764-75946783 | None:intergenic | 25.0% |
| ! | TCAGAAATGCATATCTATAT+AGG | + | chr5.1:75945581-75945600 | None:intergenic | 25.0% |
| ! | TCATCTTGATTTATTGGTAA+AGG | + | chr5.1:75945450-75945469 | None:intergenic | 25.0% |
| ! | TTGAATTCAATATGTGTGAT+TGG | - | chr5.1:75945618-75945637 | MS.gene63893:intron | 25.0% |
| !! | AAATTATGATGACTAGCTAA+TGG | + | chr5.1:75945730-75945749 | None:intergenic | 25.0% |
| !! | TGCTTAAACATATCTCTTTT+TGG | - | chr5.1:75946956-75946975 | MS.gene63893:CDS | 25.0% |
| !!! | CATTTAAAGAAAGCTAGTTT+TGG | - | chr5.1:75947076-75947095 | MS.gene63893:CDS | 25.0% |
| !!! | TTTTTTAGAACATTTTCTGC+AGG | - | chr5.1:75946298-75946317 | MS.gene63893:CDS | 25.0% |
| AAAGAAGAACAATGAATTGG+AGG | - | chr5.1:75944810-75944829 | MS.gene63893:intron | 30.0% | |
| AATAAAGATGAACCTTAGAG+AGG | + | chr5.1:75945935-75945954 | None:intergenic | 30.0% | |
| AATTCATAGTTATTAAGGGG+AGG | - | chr5.1:75946427-75946446 | MS.gene63893:CDS | 30.0% | |
| ACCAAATTAACCTAATATCC+CGG | + | chr5.1:75945866-75945885 | None:intergenic | 30.0% | |
| GAAGATTAAGAAAAAATGGG+AGG | - | chr5.1:75944936-75944955 | MS.gene63893:intron | 30.0% | |
| GCTAGATGATAAAAATGCTT+TGG | - | chr5.1:75945047-75945066 | MS.gene63893:intron | 30.0% | |
| GGAGGTTTATTAGAGAATAA+AGG | - | chr5.1:75946445-75946464 | MS.gene63893:CDS | 30.0% | |
| GGTGAATTAAGAAAAATGAC+TGG | - | chr5.1:75944976-75944995 | MS.gene63893:intron | 30.0% | |
| GGTTAAAATTGAAGAATTGG+AGG | - | chr5.1:75945080-75945099 | MS.gene63893:intron | 30.0% | |
| GTCTATTCATGATCTTGTTA+TGG | - | chr5.1:75944489-75944508 | MS.gene63893:CDS | 30.0% | |
| GTCTGAATTTAAGAAAAGAG+AGG | - | chr5.1:75944684-75944703 | MS.gene63893:CDS | 30.0% | |
| TAGATAAACTCAATTAGCAC+CGG | - | chr5.1:75945844-75945863 | MS.gene63893:intron | 30.0% | |
| TGTGTGATTGGATAAATGTT+TGG | - | chr5.1:75945630-75945649 | MS.gene63893:intron | 30.0% | |
| TTATATTATTATGGGCTCTC+TGG | - | chr5.1:75945799-75945818 | MS.gene63893:intron | 30.0% | |
| ! | AATGCTACTTACATTTCCTT+AGG | + | chr5.1:75946013-75946032 | None:intergenic | 30.0% |
| ! | GATGATAAAAATGCTTTGGA+TGG | - | chr5.1:75945051-75945070 | MS.gene63893:intron | 30.0% |
| ! | TGAATTAGAGAGTAAGGTTT+TGG | - | chr5.1:75944999-75945018 | MS.gene63893:intron | 30.0% |
| !! | AGCTCTTTTGAAAGAAGTTA+AGG | - | chr5.1:75944747-75944766 | MS.gene63893:intron | 30.0% |
| !! | TGTTCTAAAAAACTGTCTGA+AGG | + | chr5.1:75946290-75946309 | None:intergenic | 30.0% |
| !!! | CAAGTGGATAAACTGTTTTT+TGG | - | chr5.1:75946546-75946565 | MS.gene63893:CDS | 30.0% |
| AAGGTTCATCATCAGGTATA+TGG | - | chr5.1:75945532-75945551 | MS.gene63893:intron | 35.0% | |
| AATTATCCCATATCAAGTGC+TGG | + | chr5.1:75946226-75946245 | None:intergenic | 35.0% | |
| ACCGGGATATTAGGTTAATT+TGG | - | chr5.1:75945862-75945881 | MS.gene63893:intron | 35.0% | |
| AGAGAGGAAATTTGTGAGAA+AGG | - | chr5.1:75944700-75944719 | MS.gene63893:CDS | 35.0% | |
| AGATAAACTCAATTAGCACC+GGG | - | chr5.1:75945845-75945864 | MS.gene63893:intron | 35.0% | |
| ATATACTCCAGCACTTGATA+TGG | - | chr5.1:75946216-75946235 | MS.gene63893:CDS | 35.0% | |
| ATTATCGAGACATGAACCAT+CGG | + | chr5.1:75947239-75947258 | None:intergenic | 35.0% | |
| CAAGATGATCATTACACTCT+TGG | - | chr5.1:75945462-75945481 | MS.gene63893:intron | 35.0% | |
| CATAAATGACATTGTTGACG+AGG | - | chr5.1:75945419-75945438 | MS.gene63893:intron | 35.0% | |
| CATGTCTCGATAATCTTACA+AGG | - | chr5.1:75947245-75947264 | MS.gene63893:CDS | 35.0% | |
| GAGAGGAAATTTGTGAGAAA+GGG | - | chr5.1:75944701-75944720 | MS.gene63893:CDS | 35.0% | |
| GAGGAAGATGACATTGAATT+GGG | - | chr5.1:75944955-75944974 | MS.gene63893:intron | 35.0% | |
| GATGATCAATCTATGTCTCA+AGG | - | chr5.1:75947049-75947068 | MS.gene63893:CDS | 35.0% | |
| GGAGACAGTAAAGAAGAATT+TGG | - | chr5.1:75945101-75945120 | MS.gene63893:intron | 35.0% | |
| TATACTCCAGCACTTGATAT+GGG | - | chr5.1:75946217-75946236 | MS.gene63893:CDS | 35.0% | |
| TCAATTACTTGAAGATCCAG+TGG | - | chr5.1:75946810-75946829 | MS.gene63893:CDS | 35.0% | |
| TGTGTTTGGATTATCTGTTG+AGG | - | chr5.1:75946515-75946534 | MS.gene63893:CDS | 35.0% | |
| TTGGATTATCTGTTGAGGTT+TGG | - | chr5.1:75946520-75946539 | MS.gene63893:CDS | 35.0% | |
| ! | AAATGCTTTGGATGGACTTA+AGG | - | chr5.1:75945059-75945078 | MS.gene63893:intron | 35.0% |
| ! | GAAGATCTCATTCTTTTGTC+GGG | - | chr5.1:75945249-75945268 | MS.gene63893:intron | 35.0% |
| ! | GGAAGATCTCATTCTTTTGT+CGG | - | chr5.1:75945248-75945267 | MS.gene63893:intron | 35.0% |
| !! | GAAATGTAAGTAGCATTGAC+AGG | - | chr5.1:75946016-75946035 | MS.gene63893:intron | 35.0% |
| !! | GTTGCAACAAAGCTTTGAAA+TGG | - | chr5.1:75944603-75944622 | MS.gene63893:CDS | 35.0% |
| !! | TGATAGTGTTGAAGCTGTTT+TGG | - | chr5.1:75944543-75944562 | MS.gene63893:CDS | 35.0% |
| !! | TGATCCTTTTGAAGATAACG+AGG | - | chr5.1:75945371-75945390 | MS.gene63893:intron | 35.0% |
| AAGATGAACCTTAGAGAGGA+AGG | + | chr5.1:75945931-75945950 | None:intergenic | 40.0% | |
| ACTACGTGGAACTTGTCAAT+GGG | - | chr5.1:75944513-75944532 | MS.gene63893:CDS | 40.0% | |
| AGGAAAACGGTTGAGATTAC+AGG | - | chr5.1:75946355-75946374 | MS.gene63893:CDS | 40.0% | |
| ATTTGCCAATGCAGTTGACA+CGG | - | chr5.1:75947162-75947181 | MS.gene63893:CDS | 40.0% | |
| CAAAGCCTCAAGTAATGTCT+CGG | + | chr5.1:75945184-75945203 | None:intergenic | 40.0% | |
| CAATCACTAGTTGAGCATAC+TGG | + | chr5.1:75945657-75945676 | None:intergenic | 40.0% | |
| CAGAAAGAAAGCTTCCTCAA+GGG | + | chr5.1:75946666-75946685 | None:intergenic | 40.0% | |
| GACTGGTGAATTAGAGAGTA+AGG | - | chr5.1:75944993-75945012 | MS.gene63893:intron | 40.0% | |
| GAGGAATGAAAGCAGCAAAT+TGG | - | chr5.1:75945140-75945159 | MS.gene63893:intron | 40.0% | |
| GGAAAACGGTTGAGATTACA+GGG | - | chr5.1:75946356-75946375 | MS.gene63893:CDS | 40.0% | |
| GGAGAGATTAAAGCTTAGAG+AGG | - | chr5.1:75944624-75944643 | MS.gene63893:CDS | 40.0% | |
| GGAGGAAGATGACATTGAAT+TGG | - | chr5.1:75944954-75944973 | MS.gene63893:intron | 40.0% | |
| GTACATACTCAATTAGCACC+AGG | - | chr5.1:75945773-75945792 | MS.gene63893:intron | 40.0% | |
| GTTATTCAGTAGCATGCAGA+AGG | - | chr5.1:75946393-75946412 | MS.gene63893:CDS | 40.0% | |
| TACTACGTGGAACTTGTCAA+TGG | - | chr5.1:75944512-75944531 | MS.gene63893:CDS | 40.0% | |
| TCACTTGGAGAGACTTTCAA+GGG | - | chr5.1:75944651-75944670 | MS.gene63893:CDS | 40.0% | |
| TCAGAAAGAAAGCTTCCTCA+AGG | + | chr5.1:75946667-75946686 | None:intergenic | 40.0% | |
| TCGTCCTCGTTATCTTCAAA+AGG | + | chr5.1:75945378-75945397 | None:intergenic | 40.0% | |
| TGAAAGAGTAACAACGTTGG+AGG | - | chr5.1:75945227-75945246 | MS.gene63893:intron | 40.0% | |
| TGACGAAGTCAAAGGAAAAG+TGG | - | chr5.1:75945025-75945044 | MS.gene63893:intron | 40.0% | |
| TTCACTTGGAGAGACTTTCA+AGG | - | chr5.1:75944650-75944669 | MS.gene63893:CDS | 40.0% | |
| ! | AGCTGGATCTGATTTTCCTA+AGG | - | chr5.1:75945994-75946013 | MS.gene63893:intron | 40.0% |
| ! | ATATCTCTTTTTGGACCAGC+CGG | - | chr5.1:75946965-75946984 | MS.gene63893:CDS | 40.0% |
| ! | CTTGTTAGGCTTTGTGGAAT+TGG | + | chr5.1:75944458-75944477 | None:intergenic | 40.0% |
| ! | GACTTGTCTTCAAGCTTGTT+AGG | + | chr5.1:75944472-75944491 | None:intergenic | 40.0% |
| ! | GATCTTGTTATGGTACTACG+TGG | - | chr5.1:75944499-75944518 | MS.gene63893:CDS | 40.0% |
| ! | GGATTTTCCTTGAAATGCTG+AGG | - | chr5.1:75946835-75946854 | MS.gene63893:CDS | 40.0% |
| ! | GTAATCTCAACCGTTTTCCT+GGG | + | chr5.1:75946355-75946374 | None:intergenic | 40.0% |
| ! | TCAATTAGCACCGGGATATT+AGG | - | chr5.1:75945853-75945872 | MS.gene63893:intron | 40.0% |
| ! | TCTATTGGTGGCAACAATGA+GGG | - | chr5.1:75945282-75945301 | MS.gene63893:intron | 40.0% |
| ! | TGTAATCTCAACCGTTTTCC+TGG | + | chr5.1:75946356-75946375 | None:intergenic | 40.0% |
| ! | TTTGGAGTTGACGAAGTCAA+AGG | - | chr5.1:75945017-75945036 | MS.gene63893:intron | 40.0% |
| !! | CATTACTTGAGGCTTTGAAG+AGG | - | chr5.1:75945187-75945206 | MS.gene63893:intron | 40.0% |
| !! | TTCAAGCTTGTTAGGCTTTG+TGG | + | chr5.1:75944464-75944483 | None:intergenic | 40.0% |
| !!! | TGAAGCTGTTTTGGAGAAGA+GGG | - | chr5.1:75944552-75944571 | MS.gene63893:CDS | 40.0% |
| !!! | TTGAAGCTGTTTTGGAGAAG+AGG | - | chr5.1:75944551-75944570 | MS.gene63893:CDS | 40.0% |
| AAAGGGATCAAGGATGCTCA+AGG | - | chr5.1:75945513-75945532 | MS.gene63893:intron | 45.0% | |
| AGCTTCTTCCTTCCTCTCTA+AGG | - | chr5.1:75945920-75945939 | MS.gene63893:intron | 45.0% | |
| ATGCAACCCAAAACTGAACC+TGG | - | chr5.1:75944418-75944437 | MS.gene63893:CDS | 45.0% | |
| CTAGTAGCCTCAGCATTTCA+AGG | + | chr5.1:75946845-75946864 | None:intergenic | 45.0% | |
| CTCATTGTTGCCACCAATAG+AGG | + | chr5.1:75945283-75945302 | None:intergenic | 45.0% | |
| GATGCTCAAGGTTCATCATC+AGG | - | chr5.1:75945525-75945544 | MS.gene63893:intron | 45.0% | |
| GATTTCTTCCTCATCCCTTG+AGG | - | chr5.1:75946649-75946668 | MS.gene63893:CDS | 45.0% | |
| GCGTGAAAGAGTAACAACGT+TGG | - | chr5.1:75945224-75945243 | MS.gene63893:intron | 45.0% | |
| GCTTAGAGAGGAGTTTCACT+TGG | - | chr5.1:75944636-75944655 | MS.gene63893:CDS | 45.0% | |
| GTTGAGATTACAGGGTCTTG+TGG | - | chr5.1:75946364-75946383 | MS.gene63893:CDS | 45.0% | |
| TCTTCAGAACTAGGAACCAC+TGG | + | chr5.1:75945324-75945343 | None:intergenic | 45.0% | |
| TGAAAGCAGCAAATTGGCAG+AGG | - | chr5.1:75945146-75945165 | MS.gene63893:intron | 45.0% | |
| TGAAGAGCCAAGTTCATCAG+CGG | - | chr5.1:75947114-75947133 | MS.gene63893:CDS | 45.0% | |
| TGCAACCCAAAACTGAACCT+GGG | - | chr5.1:75944419-75944438 | MS.gene63893:CDS | 45.0% | |
| TTACTTGAAGATCCAGTGGC+TGG | - | chr5.1:75946814-75946833 | MS.gene63893:CDS | 45.0% | |
| TTCAAGGAAAATCCAGCCAC+TGG | + | chr5.1:75946829-75946848 | None:intergenic | 45.0% | |
| TTCCAGTTTCACTCTTCCAC+CGG | + | chr5.1:75946987-75947006 | None:intergenic | 45.0% | |
| TTTGACCGTGTCAACTGCAT+TGG | + | chr5.1:75947170-75947189 | None:intergenic | 45.0% | |
| TTTGTGGAATTGGAACCTGG+TGG | + | chr5.1:75944448-75944467 | None:intergenic | 45.0% | |
| ! | CTATTGGTGGCAACAATGAG+GGG | - | chr5.1:75945283-75945302 | MS.gene63893:intron | 45.0% |
| ! | CTCTATTGGTGGCAACAATG+AGG | - | chr5.1:75945281-75945300 | MS.gene63893:intron | 45.0% |
| ! | TATTGGTGGCAACAATGAGG+GGG | - | chr5.1:75945284-75945303 | MS.gene63893:intron | 45.0% |
| ! | TGTTGAGGTTTGGTAGCAAG+TGG | - | chr5.1:75946530-75946549 | MS.gene63893:CDS | 45.0% |
| ! | TTTCTGCAGGTGAAGAGTGT+TGG | - | chr5.1:75946311-75946330 | MS.gene63893:CDS | 45.0% |
| !! | AGTAGCATTGACAGGAACTG+TGG | - | chr5.1:75946024-75946043 | MS.gene63893:intron | 45.0% |
| AAGAGAGCCAAGAGCTAGCT+TGG | + | chr5.1:75945972-75945991 | None:intergenic | 50.0% | |
| ACCATCGGAGGAAGTAGAAG+TGG | + | chr5.1:75947224-75947243 | None:intergenic | 50.0% | |
| AGTACTCAGTCACCGAGCAA+AGG | - | chr5.1:75945495-75945514 | MS.gene63893:intron | 50.0% | |
| ATCGAGACATGAACCATCGG+AGG | + | chr5.1:75947236-75947255 | None:intergenic | 50.0% | |
| ATCGGAGGAAGTAGAAGTGG+AGG | + | chr5.1:75947221-75947240 | None:intergenic | 50.0% | |
| CGAAGCCGAGACATTACTTG+AGG | - | chr5.1:75945176-75945195 | MS.gene63893:intron | 50.0% | |
| CGCTAGAAAGCCCAGGAAAA+CGG | - | chr5.1:75946342-75946361 | MS.gene63893:CDS | 50.0% | |
| GAAAGCTTCCTCAAGGGATG+AGG | + | chr5.1:75946660-75946679 | None:intergenic | 50.0% | |
| GAGGGATATGAGACTCAGAG+AGG | - | chr5.1:75944570-75944589 | MS.gene63893:CDS | 50.0% | |
| GATAACGAGGACGAGAATGC+TGG | - | chr5.1:75945384-75945403 | MS.gene63893:intron | 50.0% | |
| GCATCCTTGATCCCTTTGCT+CGG | + | chr5.1:75945510-75945529 | None:intergenic | 50.0% | |
| GGCTTAGATGCCTCTATTGG+TGG | - | chr5.1:75945270-75945289 | MS.gene63893:intron | 50.0% | |
| GTACTCAGTCACCGAGCAAA+GGG | - | chr5.1:75945496-75945515 | MS.gene63893:intron | 50.0% | |
| TCCACTTCTACTTCCTCCGA+TGG | - | chr5.1:75947220-75947239 | MS.gene63893:CDS | 50.0% | |
| TCCTCGCTCTCTTCAGAACT+AGG | + | chr5.1:75945333-75945352 | None:intergenic | 50.0% | |
| TCGGGCTTAGATGCCTCTAT+TGG | - | chr5.1:75945267-75945286 | MS.gene63893:intron | 50.0% | |
| TGGCAACGATGAGTGAGTTG+AGG | - | chr5.1:75945121-75945140 | MS.gene63893:intron | 50.0% | |
| TGGTATACGCTAGAAAGCCC+AGG | - | chr5.1:75946335-75946354 | MS.gene63893:CDS | 50.0% | |
| ! | AGAGAGCCAAGAGCTAGCTT+GGG | + | chr5.1:75945971-75945990 | None:intergenic | 50.0% |
| ! | CTAGCTTGGGCTAGGTAACA+TGG | + | chr5.1:75945958-75945977 | None:intergenic | 50.0% |
| ! | GAGATTACAGGGTCTTGTGG+AGG | - | chr5.1:75946367-75946386 | MS.gene63893:CDS | 50.0% |
| ! | GGCTTTGTGGAATTGGAACC+TGG | + | chr5.1:75944451-75944470 | None:intergenic | 50.0% |
| ! | GGTGACCCAGGTTCAGTTTT+GGG | + | chr5.1:75944427-75944446 | None:intergenic | 50.0% |
| ! | GTAGCATGCAGAAGGTGTAG+TGG | - | chr5.1:75946401-75946420 | MS.gene63893:CDS | 50.0% |
| ! | TGGTGACCCAGGTTCAGTTT+TGG | + | chr5.1:75944428-75944447 | None:intergenic | 50.0% |
| !! | TCCTAGTTCTGAAGAGAGCG+AGG | - | chr5.1:75945329-75945348 | MS.gene63893:intron | 50.0% |
| !! | TGCAGGTGAAGAGTGTTGGA+TGG | - | chr5.1:75946315-75946334 | MS.gene63893:CDS | 50.0% |
| AGCCGGTGGAAGAGTGAAAC+TGG | - | chr5.1:75946982-75947001 | MS.gene63893:CDS | 55.0% | |
| AGTTTCACTCTTCCACCGGC+TGG | + | chr5.1:75946983-75947002 | None:intergenic | 55.0% | |
| CATCGTCGTCGTCGTCATCA+AGG | + | chr5.1:75947030-75947049 | None:intergenic | 55.0% | |
| GGAACCACTGGATCAGCAGA+AGG | + | chr5.1:75945312-75945331 | None:intergenic | 55.0% | |
| GTCACCGAGCAAAGGGATCA+AGG | - | chr5.1:75945503-75945522 | MS.gene63893:intron | 55.0% | |
| ! | ACCTAGCCCAAGCTAGCTCT+TGG | - | chr5.1:75945962-75945981 | MS.gene63893:intron | 55.0% |
| ! | CGAGGAAGAGCGTGTTCATG+TGG | - | chr5.1:75945347-75945366 | MS.gene63893:intron | 55.0% |
| ! | GCTCTTGGCTCTCTTGTAGC+TGG | - | chr5.1:75945977-75945996 | MS.gene63893:intron | 55.0% |
| ! | TCTCTTTTTGGACCAGCCGG+TGG | - | chr5.1:75946968-75946987 | MS.gene63893:CDS | 55.0% |
| ACTGAACCTGGGTCACCACC+AGG | - | chr5.1:75944430-75944449 | MS.gene63893:CDS | 60.0% | |
| GCCAAGTTCATCAGCGGCAC+TGG | - | chr5.1:75947120-75947139 | MS.gene63893:CDS | 60.0% | |
| GGAGCCTTCTGCTGATCCAG+TGG | - | chr5.1:75945305-75945324 | MS.gene63893:intron | 60.0% | |
| ! | GCCAAGAGCTAGCTTGGGCT+AGG | + | chr5.1:75945966-75945985 | None:intergenic | 60.0% |
| ! | GCCAGTGCCGCTGATGAACT+TGG | + | chr5.1:75947124-75947143 | None:intergenic | 60.0% |
| ! | TTGGAACCTGGTGGTGACCC+AGG | + | chr5.1:75944439-75944458 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 75944418 | 75947294 | 75944418 | ID=MS.gene63893 |
| chr5.1 | mRNA | 75944418 | 75947294 | 75944418 | ID=MS.gene63893.t1;Parent=MS.gene63893 |
| chr5.1 | exon | 75946166 | 75947294 | 75946166 | ID=MS.gene63893.t1.exon1;Parent=MS.gene63893.t1 |
| chr5.1 | CDS | 75946166 | 75947294 | 75946166 | ID=cds.MS.gene63893.t1;Parent=MS.gene63893.t1 |
| chr5.1 | exon | 75944418 | 75944728 | 75944418 | ID=MS.gene63893.t1.exon2;Parent=MS.gene63893.t1 |
| chr5.1 | CDS | 75944418 | 75944728 | 75944418 | ID=cds.MS.gene63893.t1;Parent=MS.gene63893.t1 |
| Gene Sequence |
| Protein sequence |
