Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64674.t1 | XP_003616416.1 | 95.5 | 616 | 28 | 0 | 1 | 616 | 1 | 616 | 0.00E+00 | 1135.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64674.t1 | Q9FFY9 | 44.4 | 648 | 297 | 15 | 1 | 606 | 1 | 627 | 1.3e-119 | 431.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64674.t1 | G7KBS1 | 95.5 | 616 | 28 | 0 | 1 | 616 | 1 | 616 | 0.0e+00 | 1135.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene64674 | 0.833864 | 4.18E-56 | -1.69E-46 |
| MS.gene049653 | MS.gene64674 | 0.826735 | 2.30E-54 | -1.69E-46 |
| MS.gene049824 | MS.gene64674 | 0.805313 | 1.42E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene64674 | 0.825052 | 5.78E-54 | -1.69E-46 |
| MS.gene049863 | MS.gene64674 | 0.808839 | 2.54E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene64674 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene64674 | 0.829344 | 5.42E-55 | -1.69E-46 |
| MS.gene050752 | MS.gene64674 | 0.805479 | 1.31E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene64674 | 0.811712 | 6.10E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene64674 | 0.810783 | 9.71E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene64674 | 0.800861 | 1.18E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene64674 | 0.815817 | 7.61E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene64674 | 0.836472 | 9.17E-57 | -1.69E-46 |
| MS.gene052286 | MS.gene64674 | 0.806789 | 6.93E-50 | -1.69E-46 |
| MS.gene053045 | MS.gene64674 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene64674 | 0.800362 | 1.49E-48 | -1.69E-46 |
| MS.gene053294 | MS.gene64674 | 0.816157 | 6.39E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene64674 | 0.822134 | 2.79E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene64674 | 0.826578 | 2.51E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene64674 | 0.801544 | 8.57E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene64674 | 0.828808 | 7.32E-55 | -1.69E-46 |
| MS.gene054403 | MS.gene64674 | 0.808032 | 3.78E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene64674 | 0.825009 | 5.92E-54 | -1.69E-46 |
| MS.gene055374 | MS.gene64674 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene64674 | 0.833144 | 6.31E-56 | -1.69E-46 |
| MS.gene055555 | MS.gene64674 | 0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene64674 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene64674 | 0.828711 | 7.73E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene64674 | 0.846989 | 1.54E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene64674 | 0.84163 | 4.23E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene64674 | 0.81499 | 1.16E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene64674 | 0.807707 | 4.43E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene64674 | 0.86556 | 5.41E-65 | -1.69E-46 |
| MS.gene05795 | MS.gene64674 | 0.807643 | 4.57E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene64674 | 0.808853 | 2.53E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene64674 | 0.800365 | 1.49E-48 | -1.69E-46 |
| MS.gene058074 | MS.gene64674 | 0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene64674 | 0.809707 | 1.66E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene64674 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene64674 | -0.828085 | 1.09E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene64674 | 0.828426 | 9.05E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene64674 | 0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene64674 | 0.800884 | 1.17E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64674.t1 | MTR_5g080010 | 96.753 | 616 | 20 | 0 | 1 | 616 | 1 | 616 | 0.0 | 1222 |
| MS.gene64674.t1 | MTR_5g080010 | 95.765 | 425 | 18 | 0 | 1 | 425 | 1 | 425 | 0.0 | 835 |
| MS.gene64674.t1 | MTR_3g067935 | 53.125 | 640 | 251 | 13 | 1 | 606 | 1 | 625 | 0.0 | 581 |
| MS.gene64674.t1 | MTR_2g097290 | 42.857 | 469 | 224 | 8 | 157 | 595 | 253 | 707 | 7.15e-105 | 333 |
| MS.gene64674.t1 | MTR_7g061840 | 36.850 | 673 | 292 | 21 | 1 | 604 | 1 | 609 | 1.30e-104 | 329 |
| MS.gene64674.t1 | MTR_2g097290 | 37.379 | 412 | 210 | 10 | 157 | 536 | 253 | 648 | 1.28e-61 | 217 |
| MS.gene64674.t1 | MTR_2g097290 | 30.131 | 229 | 139 | 4 | 157 | 367 | 253 | 478 | 6.67e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64674.t1 | AT5G13820 | 44.290 | 648 | 298 | 14 | 1 | 606 | 1 | 627 | 1.49e-151 | 451 |
| MS.gene64674.t1 | AT5G13820 | 44.290 | 648 | 298 | 14 | 1 | 606 | 1 | 627 | 1.49e-151 | 451 |
| MS.gene64674.t1 | AT3G12560 | 42.016 | 645 | 287 | 16 | 1 | 604 | 1 | 599 | 6.93e-139 | 418 |
| MS.gene64674.t1 | AT3G12560 | 42.016 | 645 | 287 | 16 | 1 | 604 | 1 | 599 | 6.93e-139 | 418 |
| MS.gene64674.t1 | AT3G46590 | 37.805 | 656 | 253 | 22 | 1 | 612 | 1 | 545 | 1.01e-99 | 315 |
| MS.gene64674.t1 | AT3G46590 | 37.595 | 657 | 254 | 23 | 1 | 612 | 1 | 546 | 7.43e-99 | 312 |
| MS.gene64674.t1 | AT3G46590 | 37.595 | 657 | 248 | 23 | 1 | 612 | 1 | 540 | 1.04e-97 | 309 |
| MS.gene64674.t1 | AT3G46590 | 37.886 | 615 | 227 | 22 | 42 | 612 | 2 | 505 | 1.71e-92 | 295 |
| MS.gene64674.t1 | AT5G59430 | 41.135 | 423 | 187 | 11 | 189 | 603 | 188 | 556 | 5.57e-78 | 258 |
| MS.gene64674.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 188 | 549 | 5.14e-77 | 256 |
| MS.gene64674.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 188 | 549 | 5.14e-77 | 256 |
| MS.gene64674.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 188 | 549 | 5.14e-77 | 256 |
| MS.gene64674.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 187 | 548 | 5.46e-77 | 256 |
| MS.gene64674.t1 | AT3G53790 | 71.818 | 110 | 27 | 2 | 490 | 595 | 287 | 396 | 1.76e-43 | 160 |
| MS.gene64674.t1 | AT3G53790 | 37.158 | 183 | 101 | 5 | 259 | 436 | 119 | 292 | 1.30e-19 | 92.0 |
| MS.gene64674.t1 | AT3G46590 | 34.204 | 421 | 200 | 18 | 1 | 399 | 1 | 366 | 1.18e-40 | 153 |
Find 147 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTCCAATTACTTTCTT+AGG | 0.109494 | 5.2:-67997844 | None:intergenic |
| TGCAACTGTTGCTTCATTAA+AGG | 0.170101 | 5.2:+67998058 | MS.gene64674:CDS |
| ATGATGACGAAAACTTTATT+AGG | 0.242004 | 5.2:+67997270 | MS.gene64674:CDS |
| GGAGCTATTGGATAGGGTTT+TGG | 0.246722 | 5.2:+68000075 | MS.gene64674:CDS |
| AATTACTTTCTTAGGGGAAT+TGG | 0.254177 | 5.2:-67997836 | None:intergenic |
| GGAAACAATTCCCCACAAAA+TGG | 0.254603 | 5.2:-67997194 | None:intergenic |
| AATTCCCCTAAGAAAGTAAT+TGG | 0.278506 | 5.2:+67997838 | MS.gene64674:CDS |
| AGAGACTTGGTAATGGATTC+AGG | 0.281628 | 5.2:+67996635 | MS.gene64674:CDS |
| GAAGCAACAGTTGCAGTTTC+GGG | 0.282983 | 5.2:-67998050 | None:intergenic |
| TGCAAAAGTTCGCGTTTCTA+AGG | 0.302423 | 5.2:+67997882 | MS.gene64674:CDS |
| TTACTTACTCTTACAGATCT+TGG | 0.307105 | 5.2:-67996688 | None:intergenic |
| TGGTTTGTGTGCAGGATAAA+TGG | 0.309116 | 5.2:+67999990 | MS.gene64674:intron |
| TGAAGCAACAGTTGCAGTTT+CGG | 0.311212 | 5.2:-67998051 | None:intergenic |
| AGTTTCGCATCGAGTCATTC+AGG | 0.318139 | 5.2:+67998003 | MS.gene64674:CDS |
| TTCAAATTGGAGAATAGGTT+TGG | 0.318263 | 5.2:+67997044 | MS.gene64674:CDS |
| TCCTCCTTGCTTACAAATAC+TGG | 0.330363 | 5.2:+67998952 | MS.gene64674:CDS |
| ACATTGCACGCAAAATAATT+AGG | 0.331937 | 5.2:+67997339 | MS.gene64674:CDS |
| CGAAATCGCTCTTCTGTTAA+CGG | 0.334359 | 5.2:-67996915 | None:intergenic |
| GAGGCGGTGATGACTATAAT+AGG | 0.341788 | 5.2:+67998244 | MS.gene64674:CDS |
| GGGAGGAATGCTAGTAAGTT+AGG | 0.342627 | 5.2:+67997239 | MS.gene64674:CDS |
| AGGGATTTCTGTTGCCAAAC+AGG | 0.342636 | 5.2:+67998927 | MS.gene64674:CDS |
| GGAACTCCCTCCATAGATTC+AGG | 0.342756 | 5.2:+67998907 | MS.gene64674:CDS |
| TGGAGCAACCTTCCAGTGTT+TGG | 0.343786 | 5.2:-67997381 | None:intergenic |
| TTCCTCCAATTACTTTCTTA+GGG | 0.346950 | 5.2:-67997843 | None:intergenic |
| GCCAGTTCCTCAGGAGCTAT+TGG | 0.348630 | 5.2:+68000063 | MS.gene64674:CDS |
| CTTGGACATCTAGGTACCTT+AGG | 0.349158 | 5.2:-67996670 | None:intergenic |
| TCAACTTCAGACACAGAAAA+TGG | 0.357936 | 5.2:-67999180 | None:intergenic |
| GCATGTTGGTGTTCTTGTTA+AGG | 0.368440 | 5.2:+67998276 | MS.gene64674:CDS |
| AACCTTCCAGTGTTTGGAAT+TGG | 0.390971 | 5.2:-67997375 | None:intergenic |
| CGCGTTTCTAAGGATTCTAA+TGG | 0.394563 | 5.2:+67997892 | MS.gene64674:CDS |
| TCCAATAGCTCCTGAGGAAC+TGG | 0.395946 | 5.2:-68000064 | None:intergenic |
| TTCAGACTTCACATTATTGT+TGG | 0.402330 | 5.2:-67997018 | None:intergenic |
| GCTTCTCCAGTTGTTTGTGC+TGG | 0.408670 | 5.2:+67998403 | MS.gene64674:CDS |
| AAGCAAGGAGGAACCCTGTT+TGG | 0.410467 | 5.2:-67998941 | None:intergenic |
| TGTTCACAATCTTTCAACTT+TGG | 0.411776 | 5.2:-67997401 | None:intergenic |
| AACAGAAATCCCTGAATCTA+TGG | 0.411949 | 5.2:-67998917 | None:intergenic |
| GGATCACCAGCACAAACAAC+TGG | 0.414617 | 5.2:-67998409 | None:intergenic |
| CATGTTGGTGTTCTTGTTAA+GGG | 0.416802 | 5.2:+67998277 | MS.gene64674:CDS |
| GCTTGACATGCTGCTTGGAT+TGG | 0.423506 | 5.2:-68000123 | None:intergenic |
| TGACATGCTGCTTGGATTGG+TGG | 0.426360 | 5.2:-68000120 | None:intergenic |
| GAAACAATTCCCCACAAAAT+GGG | 0.429990 | 5.2:-67997193 | None:intergenic |
| GGAACGTCAACGTAAAGTTC+TGG | 0.430171 | 5.2:-67998029 | None:intergenic |
| CATCACGAGGCTGACAGTTC+AGG | 0.432205 | 5.2:+67997107 | MS.gene64674:CDS |
| TAATGGATTCAGGGACTATC+AGG | 0.432252 | 5.2:+67996645 | MS.gene64674:CDS |
| GAGAGGACAGCCAGTTCCTC+AGG | 0.432830 | 5.2:+68000054 | MS.gene64674:CDS |
| TTGATGCTTGACATGCTGCT+TGG | 0.441541 | 5.2:-68000128 | None:intergenic |
| GATAAACTAACACAAGATTC+CGG | 0.452961 | 5.2:+67999054 | MS.gene64674:CDS |
| CTTACAGATCTTGGACATCT+AGG | 0.453561 | 5.2:-67996679 | None:intergenic |
| GTTCATGCAGTTGAGGAAGT+TGG | 0.454012 | 5.2:+67999210 | MS.gene64674:CDS |
| CAAGGGAAGAAGCTGATTCA+TGG | 0.454467 | 5.2:-67998996 | None:intergenic |
| TTCCTTGAAAAGGAAGCATT+GGG | 0.461169 | 5.2:-67997215 | None:intergenic |
| TCCTCAGGAGCTATTGGATA+GGG | 0.470302 | 5.2:+68000069 | MS.gene64674:CDS |
| ATTCCTCCCATTCCTTGAAA+AGG | 0.474110 | 5.2:-67997225 | None:intergenic |
| TAGGACTTATGTAGACTTGA+AGG | 0.479281 | 5.2:+67999358 | MS.gene64674:CDS |
| GGCTGTCCTCTCCTTTGTTG+AGG | 0.480024 | 5.2:-68000043 | None:intergenic |
| ATTCCTTGAAAAGGAAGCAT+TGG | 0.481452 | 5.2:-67997216 | None:intergenic |
| TTGGATTTGTCTAGGTCTCT+AGG | 0.484229 | 5.2:+67998886 | MS.gene64674:intron |
| GCAGTTGAGGAAGTTGGAAC+TGG | 0.488859 | 5.2:+67999216 | MS.gene64674:CDS |
| AGAGGAAGAAATTATCAGAC+AGG | 0.491022 | 5.2:+67997767 | MS.gene64674:CDS |
| GAACTACTTGCATCTTTAGC+CGG | 0.491484 | 5.2:+67996837 | MS.gene64674:CDS |
| GAGAAACATCTTGAGAGTGC+TGG | 0.500393 | 5.2:+67996966 | MS.gene64674:CDS |
| CGTGAAGGTCTAAAAGCCTT+CGG | 0.501813 | 5.2:-67997314 | None:intergenic |
| TGGTCCAGTGTTCTGATTCA+CGG | 0.506571 | 5.2:-67999127 | None:intergenic |
| AGACACAGAAAATGGTCTCC+TGG | 0.509618 | 5.2:-67999172 | None:intergenic |
| AGCTTGTACAGCGTCGAACC+AGG | 0.512219 | 5.2:+67999154 | MS.gene64674:CDS |
| AACAGAACTCTTCGTCAGAC+TGG | 0.514395 | 5.2:+67998319 | MS.gene64674:CDS |
| CCGCTCAAGTTGGCTAAAGA+AGG | 0.515374 | 5.2:-67997158 | None:intergenic |
| AACAGAAGAGCGATTTCGAA+AGG | 0.516612 | 5.2:+67996920 | MS.gene64674:CDS |
| CAAGAGTGGCCATCCTCGAC+TGG | 0.517246 | 5.2:-67996807 | None:intergenic |
| TTGAAGAAGAGACTTGGTAA+TGG | 0.519239 | 5.2:+67996628 | MS.gene64674:CDS |
| AGAAACATCTTGAGAGTGCT+GGG | 0.523924 | 5.2:+67996967 | MS.gene64674:CDS |
| GAACTCCCTCCATAGATTCA+GGG | 0.526972 | 5.2:+67998908 | MS.gene64674:CDS |
| GAGACTTGGTAATGGATTCA+GGG | 0.529036 | 5.2:+67996636 | MS.gene64674:CDS |
| GATTGTGAACATTCTCGCTA+TGG | 0.532088 | 5.2:+67997413 | MS.gene64674:CDS |
| CACAAGTGGTTGGACAACAT+TGG | 0.539637 | 5.2:-68000152 | None:intergenic |
| TCAAGTCTACATAAGTCCTA+TGG | 0.543438 | 5.2:-67999355 | None:intergenic |
| GGTCCAGTGTTCTGATTCAC+GGG | 0.543575 | 5.2:-67999126 | None:intergenic |
| AATGCCTCAGTACTATGAGC+TGG | 0.546437 | 5.2:-67999093 | None:intergenic |
| AGGTCTAAAAGCCTTCGGTT+TGG | 0.548415 | 5.2:-67997309 | None:intergenic |
| GGGATTTCTGTTGCCAAACA+GGG | 0.550679 | 5.2:+67998928 | MS.gene64674:CDS |
| TTGGACATCTAGGTACCTTA+GGG | 0.553309 | 5.2:-67996669 | None:intergenic |
| AGATAAACTCGGTTTCGTGT+TGG | 0.553459 | 5.2:+67998363 | MS.gene64674:CDS |
| ATGTAGCATCTCAGCCTACC+AGG | 0.553875 | 5.2:+67998440 | MS.gene64674:CDS |
| AGTGTCACACTCTGTTGAAG+AGG | 0.554973 | 5.2:+67997749 | MS.gene64674:CDS |
| TCTACATAATCACAAGTGGT+TGG | 0.557057 | 5.2:-68000162 | None:intergenic |
| TTTAATGTTACCGCTCAAGT+TGG | 0.557954 | 5.2:-67997168 | None:intergenic |
| ACAGAAGAGCGATTTCGAAA+GGG | 0.558663 | 5.2:+67996921 | MS.gene64674:CDS |
| AGCACTTGTTCATGCAGTTG+AGG | 0.558933 | 5.2:+67999203 | MS.gene64674:CDS |
| TTCCAATTCCAAACACTGGA+AGG | 0.567244 | 5.2:+67997373 | MS.gene64674:CDS |
| ACTCTCCTTCAGCAACTCAC+CGG | 0.568548 | 5.2:-67996856 | None:intergenic |
| TGGAACAGAAACTAGCGCTC+CGG | 0.569116 | 5.2:-67999073 | None:intergenic |
| GGTTCGACGCTGTACAAGCT+CGG | 0.569476 | 5.2:-67999151 | None:intergenic |
| TTTAGCCGGTGAGTTGCTGA+AGG | 0.574743 | 5.2:+67996851 | MS.gene64674:CDS |
| CAGGGACTATCAGGTCCCTA+AGG | 0.575068 | 5.2:+67996654 | MS.gene64674:CDS |
| TCAACTTTCGCTCACCTGGT+AGG | 0.576936 | 5.2:-67998454 | None:intergenic |
| ACCGCCAGTATTTGTAAGCA+AGG | 0.577016 | 5.2:-67998956 | None:intergenic |
| TCCCCTAAGAAAGTAATTGG+AGG | 0.577061 | 5.2:+67997841 | MS.gene64674:CDS |
| GCAAAATAATTAGGAAGCGG+TGG | 0.577586 | 5.2:+67997348 | MS.gene64674:CDS |
| CACGCAAAATAATTAGGAAG+CGG | 0.581824 | 5.2:+67997345 | MS.gene64674:CDS |
| GTGATGACTATAATAGGAGG+TGG | 0.582455 | 5.2:+67998250 | MS.gene64674:CDS |
| GGAGAAGCTTGAGAAGAGCT+AGG | 0.582931 | 5.2:-67998388 | None:intergenic |
| CGACGCTGTACAAGCTCGGA+TGG | 0.583494 | 5.2:-67999147 | None:intergenic |
| GTCTTCCTCTTATGACTCGA+GGG | 0.585238 | 5.2:-67997703 | None:intergenic |
| TGCGTCCCTCGAGTCATAAG+AGG | 0.585502 | 5.2:+67997698 | MS.gene64674:CDS |
| TCCTCCAATTACTTTCTTAG+GGG | 0.586162 | 5.2:-67997842 | None:intergenic |
| TGAGATGCTACATGGTGAGA+AGG | 0.589368 | 5.2:-67998430 | None:intergenic |
| TTCAAGAAACCAGTCGAGGA+TGG | 0.590011 | 5.2:+67996798 | MS.gene64674:CDS |
| ATCAGATGCATTGCTAGAGG+TGG | 0.590241 | 5.2:-67996886 | None:intergenic |
| ATCTCTCCTCAACAAAGGAG+AGG | 0.592039 | 5.2:+68000037 | MS.gene64674:CDS |
| CAAAGTTTGCACCAAACCGA+AGG | 0.594191 | 5.2:+67997298 | MS.gene64674:CDS |
| TTCCTCAGGAGCTATTGGAT+AGG | 0.595354 | 5.2:+68000068 | MS.gene64674:CDS |
| TATCAGATATAGTGTCAGCA+AGG | 0.595686 | 5.2:-67999014 | None:intergenic |
| AGTCTTCCTCTTATGACTCG+AGG | 0.596394 | 5.2:-67997704 | None:intergenic |
| TTTATAGAGGACAGTTATGG+AGG | 0.597438 | 5.2:+67998225 | MS.gene64674:intron |
| AGAAATCCCTGAATCTATGG+AGG | 0.598839 | 5.2:-67998914 | None:intergenic |
| AACATCAGATGCATTGCTAG+AGG | 0.601082 | 5.2:-67996889 | None:intergenic |
| CTGAACTGTCAGCCTCGTGA+TGG | 0.601669 | 5.2:-67997106 | None:intergenic |
| GAGGAAGAAATTATCAGACA+GGG | 0.603590 | 5.2:+67997768 | MS.gene64674:CDS |
| AAACAATTCCCCACAAAATG+GGG | 0.608737 | 5.2:-67997192 | None:intergenic |
| GGACTTCCAATTCCAAACAC+TGG | 0.611770 | 5.2:+67997369 | MS.gene64674:CDS |
| ATAGAGGACAGTTATGGAGG+CGG | 0.617071 | 5.2:+67998228 | MS.gene64674:intron |
| TTGAGGAAGTTGGAACTGGA+AGG | 0.620909 | 5.2:+67999220 | MS.gene64674:CDS |
| ACCCTATCCAATAGCTCCTG+AGG | 0.621261 | 5.2:-68000070 | None:intergenic |
| TCGATGCTAACTCATGGTGG+AGG | 0.623580 | 5.2:+67997793 | MS.gene64674:CDS |
| TCTTTCTACATAATCACAAG+TGG | 0.623634 | 5.2:-68000166 | None:intergenic |
| TTGCGTGCAATGTATCGTGA+AGG | 0.623664 | 5.2:-67997329 | None:intergenic |
| TGGTAGGCTGAGATGCTACA+TGG | 0.626444 | 5.2:-67998438 | None:intergenic |
| CCTTCTTTAGCCAACTTGAG+CGG | 0.626589 | 5.2:+67997158 | MS.gene64674:CDS |
| ATGTTGGTGTTCTTGTTAAG+GGG | 0.626831 | 5.2:+67998278 | MS.gene64674:CDS |
| AGGGGTTCGATGCTAACTCA+TGG | 0.630655 | 5.2:+67997787 | MS.gene64674:CDS |
| GTAGTTCAAAAGCACAAGAG+TGG | 0.631884 | 5.2:-67996821 | None:intergenic |
| ATCAGATATAGTGTCAGCAA+GGG | 0.636117 | 5.2:-67999013 | None:intergenic |
| AAAGAAAATATAGATAAACT+CGG | 0.652207 | 5.2:+67998352 | MS.gene64674:CDS |
| TCCTTGCTTACAAATACTGG+CGG | 0.652781 | 5.2:+67998955 | MS.gene64674:CDS |
| GTTCCCGTGAATCAGAACAC+TGG | 0.655650 | 5.2:+67999123 | MS.gene64674:CDS |
| GAAATCCCTGAATCTATGGA+GGG | 0.665973 | 5.2:-67998913 | None:intergenic |
| ATAGGAGGTGGAGTGCATGT+TGG | 0.667170 | 5.2:+67998262 | MS.gene64674:CDS |
| GCGGTGATGACTATAATAGG+AGG | 0.667399 | 5.2:+67998247 | MS.gene64674:CDS |
| TGTTCCAGCTCATAGTACTG+AGG | 0.671950 | 5.2:+67999089 | MS.gene64674:CDS |
| TGCGTTCAAGAAACCAGTCG+AGG | 0.672753 | 5.2:+67996794 | MS.gene64674:CDS |
| ATTCATGGTTCATGTCAACA+AGG | 0.686818 | 5.2:-67998981 | None:intergenic |
| ATGGTGTTGAAGAAGAGACT+TGG | 0.697633 | 5.2:+67996622 | MS.gene64674:CDS |
| AGGAAGAAATTATCAGACAG+GGG | 0.702812 | 5.2:+67997769 | MS.gene64674:CDS |
| GGTTCGATGCTAACTCATGG+TGG | 0.706099 | 5.2:+67997790 | MS.gene64674:CDS |
| GTAATTGGAGGAAATAACCG+TGG | 0.709826 | 5.2:+67997853 | MS.gene64674:CDS |
| GCCAGTATTTGTAAGCAAGG+AGG | 0.726150 | 5.2:-67998953 | None:intergenic |
| AGAAGTTTCAAACCATCACG+AGG | 0.743753 | 5.2:+67997094 | MS.gene64674:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAGTTAAAAAAAAAAA+AGG | - | chr5.2:67997652-67997671 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAGGAAAAAACT+TGG | - | chr5.2:67997641-67997660 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGGAAAAAACTT+GGG | - | chr5.2:67997640-67997659 | None:intergenic | 15.0% |
| !! | AAAGAAAATATAGATAAACT+CGG | + | chr5.2:67998352-67998371 | MS.gene64674:CDS | 15.0% |
| !! | ATAAGAATTATTCAATTGAA+TGG | - | chr5.2:67998845-67998864 | None:intergenic | 15.0% |
| !!! | ATTGTTTAACTTTTTTATAG+AGG | + | chr5.2:67998212-67998231 | MS.gene64674:intron | 15.0% |
| !! | AAGAATTAAGATATGATAGA+AGG | - | chr5.2:67999389-67999408 | None:intergenic | 20.0% |
| !! | AGAATTAAGATATGATAGAA+GGG | - | chr5.2:67999388-67999407 | None:intergenic | 20.0% |
| !! | ATAGCTTATATTAAAACAGT+TGG | - | chr5.2:67998602-67998621 | None:intergenic | 20.0% |
| !! | GTGAAAGAACAATAAATTTA+AGG | - | chr5.2:67999691-67999710 | None:intergenic | 20.0% |
| !! | TCAAAATAAGGAAAATGTTA+TGG | - | chr5.2:67999732-67999751 | None:intergenic | 20.0% |
| !! | TTTATCATAAATATCAGACT+CGG | + | chr5.2:67999872-67999891 | MS.gene64674:intron | 20.0% |
| !!! | AAATTTTCAAATTGGAGAAT+AGG | + | chr5.2:67997039-67997058 | MS.gene64674:CDS | 20.0% |
| !!! | AATGTGTAATTTGTAGATAA+TGG | + | chr5.2:67997673-67997692 | MS.gene64674:intron | 20.0% |
| !!! | ATTTAGTTTCATCAATAGTT+TGG | + | chr5.2:67998147-67998166 | MS.gene64674:intron | 20.0% |
| !!! | CTTTATCTAATTTTTGCAAT+TGG | + | chr5.2:67998867-67998886 | MS.gene64674:intron | 20.0% |
| !!! | TCTTAGTTTTAAGTTAGATT+TGG | - | chr5.2:67999635-67999654 | None:intergenic | 20.0% |
| ! | AAAATCAATTGCAAGAATTG+CGG | - | chr5.2:67996717-67996736 | None:intergenic | 25.0% |
| ! | AAAATTGTCACCAACTAAAA+GGG | - | chr5.2:67997593-67997612 | None:intergenic | 25.0% |
| ! | ACTTAGTTTATTGCCATTAA+AGG | - | chr5.2:67998768-67998787 | None:intergenic | 25.0% |
| ! | ATCCTGAAGAAATTTGATTA+CGG | + | chr5.2:67998812-67998831 | MS.gene64674:intron | 25.0% |
| ! | TAAAATTGTCACCAACTAAA+AGG | - | chr5.2:67997594-67997613 | None:intergenic | 25.0% |
| ! | TAAATTTAAAGAGAAAGACG+AGG | + | chr5.2:67999439-67999458 | MS.gene64674:intron | 25.0% |
| ! | TTTAATGGCAATAAACTAAG+TGG | + | chr5.2:67998767-67998786 | MS.gene64674:intron | 25.0% |
| !! | ATGATGACGAAAACTTTATT+AGG | + | chr5.2:67997270-67997289 | MS.gene64674:CDS | 25.0% |
| !! | TTAAAGGTATGATGATTGAA+TGG | + | chr5.2:67998074-67998093 | MS.gene64674:intron | 25.0% |
| !!! | ATTTTTTTAAACTATGCAGG+TGG | + | chr5.2:67999297-67999316 | MS.gene64674:intron | 25.0% |
| !!! | GAAGTCTGAAATTTTCAAAT+TGG | + | chr5.2:67997031-67997050 | MS.gene64674:CDS | 25.0% |
| !!! | GACATTTTTTTAAACTATGC+AGG | + | chr5.2:67999294-67999313 | MS.gene64674:intron | 25.0% |
| !!! | GATTTTTACCTGTTTTTGTT+TGG | + | chr5.2:67996731-67996750 | MS.gene64674:intron | 25.0% |
| !!! | GTTGTTTTTATAAGCTATCA+TGG | + | chr5.2:67998624-67998643 | MS.gene64674:intron | 25.0% |
| !!! | TAGAATTATGCAGTTGTTTT+TGG | + | chr5.2:67999816-67999835 | MS.gene64674:intron | 25.0% |
| !!! | TTTTTTATAGAGGACAGTTA+TGG | + | chr5.2:67998222-67998241 | MS.gene64674:intron | 25.0% |
| AACCAAAAGTTCAAGTCATT+AGG | - | chr5.2:67999975-67999994 | None:intergenic | 30.0% | |
| AACCGTAATCAAATTTCTTC+AGG | - | chr5.2:67998817-67998836 | None:intergenic | 30.0% | |
| AATTACTTTCTTAGGGGAAT+TGG | - | chr5.2:67997839-67997858 | None:intergenic | 30.0% | |
| AATTCCCCTAAGAAAGTAAT+TGG | + | chr5.2:67997838-67997857 | MS.gene64674:CDS | 30.0% | |
| ACATTGCACGCAAAATAATT+AGG | + | chr5.2:67997339-67997358 | MS.gene64674:CDS | 30.0% | |
| AGTTTCATCAATAGTTTGGA+GGG | + | chr5.2:67998151-67998170 | MS.gene64674:intron | 30.0% | |
| ATGCAACTACGATCAAAATA+AGG | - | chr5.2:67999744-67999763 | None:intergenic | 30.0% | |
| CACATATATGTCTATGAGTT+AGG | + | chr5.2:67997482-67997501 | MS.gene64674:intron | 30.0% | |
| CTAGTACATGAACTCAAATA+AGG | + | chr5.2:67998729-67998748 | MS.gene64674:intron | 30.0% | |
| GATAAACTAACACAAGATTC+CGG | + | chr5.2:67999054-67999073 | MS.gene64674:CDS | 30.0% | |
| GATCATTATTTGACATGCTT+AGG | + | chr5.2:67999582-67999601 | MS.gene64674:intron | 30.0% | |
| TAGTTTCATCAATAGTTTGG+AGG | + | chr5.2:67998150-67998169 | MS.gene64674:intron | 30.0% | |
| TCTAATGGTAATTTATTGCG+TGG | + | chr5.2:67997907-67997926 | MS.gene64674:intron | 30.0% | |
| TGTTCACAATCTTTCAACTT+TGG | - | chr5.2:67997404-67997423 | None:intergenic | 30.0% | |
| TTACTTACTCTTACAGATCT+TGG | - | chr5.2:67996691-67996710 | None:intergenic | 30.0% | |
| TTCAAATTGGAGAATAGGTT+TGG | + | chr5.2:67997044-67997063 | MS.gene64674:CDS | 30.0% | |
| TTCAGACTTCACATTATTGT+TGG | - | chr5.2:67997021-67997040 | None:intergenic | 30.0% | |
| TTCCTCCAATTACTTTCTTA+GGG | - | chr5.2:67997846-67997865 | None:intergenic | 30.0% | |
| TTTCCTCCAATTACTTTCTT+AGG | - | chr5.2:67997847-67997866 | None:intergenic | 30.0% | |
| ! | AACATTAAATCCCCATTTTG+TGG | + | chr5.2:67997182-67997201 | MS.gene64674:CDS | 30.0% |
| ! | ACATTAAATCCCCATTTTGT+GGG | + | chr5.2:67997183-67997202 | MS.gene64674:CDS | 30.0% |
| ! | TAACACCTATAATGGAAAAG+TGG | + | chr5.2:67999462-67999481 | MS.gene64674:intron | 30.0% |
| ! | TTCCTAATGACTTGAACTTT+TGG | + | chr5.2:67999970-67999989 | MS.gene64674:intron | 30.0% |
| ! | TTGAGTTTGAAATTCTTCAG+AGG | + | chr5.2:67996766-67996785 | MS.gene64674:intron | 30.0% |
| ! | TTTTGCAATTGGATTTGTCT+AGG | + | chr5.2:67998878-67998897 | MS.gene64674:intron | 30.0% |
| !!! | GGACATTTTAGTTTAAGGTT+GGG | + | chr5.2:67999513-67999532 | MS.gene64674:intron | 30.0% |
| !!! | TGATGGGACATTTTAGTTTA+AGG | + | chr5.2:67999508-67999527 | MS.gene64674:intron | 30.0% |
| !!! | TTTACCTGTTTTTGTTTGGA+TGG | + | chr5.2:67996735-67996754 | MS.gene64674:intron | 30.0% |
| AAACAATTCCCCACAAAATG+GGG | - | chr5.2:67997195-67997214 | None:intergenic | 35.0% | |
| AACACCATCCAAACAAAAAC+AGG | - | chr5.2:67996742-67996761 | None:intergenic | 35.0% | |
| AACAGAAATCCCTGAATCTA+TGG | - | chr5.2:67998920-67998939 | None:intergenic | 35.0% | |
| AGAGGAAGAAATTATCAGAC+AGG | + | chr5.2:67997767-67997786 | MS.gene64674:CDS | 35.0% | |
| AGGAAGAAATTATCAGACAG+GGG | + | chr5.2:67997769-67997788 | MS.gene64674:CDS | 35.0% | |
| ATATGTTCTTTGCATCCTAC+TGG | + | chr5.2:67997951-67997970 | MS.gene64674:intron | 35.0% | |
| ATCAGATATAGTGTCAGCAA+GGG | - | chr5.2:67999016-67999035 | None:intergenic | 35.0% | |
| ATTCATGGTTCATGTCAACA+AGG | - | chr5.2:67998984-67999003 | None:intergenic | 35.0% | |
| CAAAAATCTCTCCTCAACAA+AGG | + | chr5.2:68000032-68000051 | MS.gene64674:CDS | 35.0% | |
| CACGCAAAATAATTAGGAAG+CGG | + | chr5.2:67997345-67997364 | MS.gene64674:CDS | 35.0% | |
| CCATTACAACGTATAGCTAA+TGG | - | chr5.2:67999937-67999956 | None:intergenic | 35.0% | |
| CCATTAGCTATACGTTGTAA+TGG | + | chr5.2:67999934-67999953 | MS.gene64674:intron | 35.0% | |
| CTTGTTAAGGGGAAAAAAGT+TGG | + | chr5.2:67998289-67998308 | MS.gene64674:CDS | 35.0% | |
| GAAACAATTCCCCACAAAAT+GGG | - | chr5.2:67997196-67997215 | None:intergenic | 35.0% | |
| GAGGAAGAAATTATCAGACA+GGG | + | chr5.2:67997768-67997787 | MS.gene64674:CDS | 35.0% | |
| GTTTCATCAATAGTTTGGAG+GGG | + | chr5.2:67998152-67998171 | MS.gene64674:intron | 35.0% | |
| TAGGACTTATGTAGACTTGA+AGG | + | chr5.2:67999358-67999377 | MS.gene64674:CDS | 35.0% | |
| TATCAGATATAGTGTCAGCA+AGG | - | chr5.2:67999017-67999036 | None:intergenic | 35.0% | |
| TCAACTTCAGACACAGAAAA+TGG | - | chr5.2:67999183-67999202 | None:intergenic | 35.0% | |
| TCAAGTCTACATAAGTCCTA+TGG | - | chr5.2:67999358-67999377 | None:intergenic | 35.0% | |
| TCCTCCAATTACTTTCTTAG+GGG | - | chr5.2:67997845-67997864 | None:intergenic | 35.0% | |
| TTTAATGTTACCGCTCAAGT+TGG | - | chr5.2:67997171-67997190 | None:intergenic | 35.0% | |
| TTTATAGAGGACAGTTATGG+AGG | + | chr5.2:67998225-67998244 | MS.gene64674:intron | 35.0% | |
| ! | ATGTTGGTGTTCTTGTTAAG+GGG | + | chr5.2:67998278-67998297 | MS.gene64674:CDS | 35.0% |
| ! | ATTCCTTGAAAAGGAAGCAT+TGG | - | chr5.2:67997219-67997238 | None:intergenic | 35.0% |
| ! | CATGTTGGTGTTCTTGTTAA+GGG | + | chr5.2:67998277-67998296 | MS.gene64674:CDS | 35.0% |
| ! | CATTAAATCCCCATTTTGTG+GGG | + | chr5.2:67997184-67997203 | MS.gene64674:CDS | 35.0% |
| ! | GTTTGAAATTCTTCAGAGGA+CGG | + | chr5.2:67996770-67996789 | MS.gene64674:intron | 35.0% |
| ! | TGCAACTGTTGCTTCATTAA+AGG | + | chr5.2:67998058-67998077 | MS.gene64674:CDS | 35.0% |
| ! | TTGAAGAAGAGACTTGGTAA+TGG | + | chr5.2:67996628-67996647 | MS.gene64674:CDS | 35.0% |
| ! | TTTCTTTGCACCCTTTTAGT+TGG | + | chr5.2:67997580-67997599 | MS.gene64674:intron | 35.0% |
| !! | AATGCTTCCTTTTCAAGGAA+TGG | + | chr5.2:67997218-67997237 | MS.gene64674:CDS | 35.0% |
| !! | ATGCTTCCTTTTCAAGGAAT+GGG | + | chr5.2:67997219-67997238 | MS.gene64674:CDS | 35.0% |
| !! | ATTGCCTTTAGAGGTTTTGA+TGG | + | chr5.2:67999491-67999510 | MS.gene64674:intron | 35.0% |
| !! | TCGTACCACTTTTCCATTAT+AGG | - | chr5.2:67999470-67999489 | None:intergenic | 35.0% |
| !! | TTCCTTGAAAAGGAAGCATT+GGG | - | chr5.2:67997218-67997237 | None:intergenic | 35.0% |
| !! | TTGCCTTTAGAGGTTTTGAT+GGG | + | chr5.2:67999492-67999511 | MS.gene64674:intron | 35.0% |
| !!! | GGGACATTTTAGTTTAAGGT+TGG | + | chr5.2:67999512-67999531 | MS.gene64674:intron | 35.0% |
| AACAGAAGAGCGATTTCGAA+AGG | + | chr5.2:67996920-67996939 | MS.gene64674:CDS | 40.0% | |
| AACATCAGATGCATTGCTAG+AGG | - | chr5.2:67996892-67996911 | None:intergenic | 40.0% | |
| ACAGAAGAGCGATTTCGAAA+GGG | + | chr5.2:67996921-67996940 | MS.gene64674:CDS | 40.0% | |
| ACTTTCGCTGCCTAAAAAGA+CGG | - | chr5.2:67999266-67999285 | None:intergenic | 40.0% | |
| AGAAATCCCTGAATCTATGG+AGG | - | chr5.2:67998917-67998936 | None:intergenic | 40.0% | |
| AGAAGTTTCAAACCATCACG+AGG | + | chr5.2:67997094-67997113 | MS.gene64674:CDS | 40.0% | |
| AGACGAGGTAACACCTATAA+TGG | + | chr5.2:67999454-67999473 | MS.gene64674:intron | 40.0% | |
| AGATAAACTCGGTTTCGTGT+TGG | + | chr5.2:67998363-67998382 | MS.gene64674:CDS | 40.0% | |
| ATTCCTCCCATTCCTTGAAA+AGG | - | chr5.2:67997228-67997247 | None:intergenic | 40.0% | |
| ATTGCCATTAAAGGCCTGTT+CGG | - | chr5.2:67998759-67998778 | None:intergenic | 40.0% | |
| CGAAATCGCTCTTCTGTTAA+CGG | - | chr5.2:67996918-67996937 | None:intergenic | 40.0% | |
| CTCTTAGCTTAGACTCTGTT+TGG | + | chr5.2:67998484-67998503 | MS.gene64674:intron | 40.0% | |
| CTTACAGATCTTGGACATCT+AGG | - | chr5.2:67996682-67996701 | None:intergenic | 40.0% | |
| GAAATCCCTGAATCTATGGA+GGG | - | chr5.2:67998916-67998935 | None:intergenic | 40.0% | |
| GAACTACTTGCATCTTTAGC+CGG | + | chr5.2:67996837-67996856 | MS.gene64674:CDS | 40.0% | |
| GACAAATCATCAATGCCAGT+AGG | - | chr5.2:67997969-67997988 | None:intergenic | 40.0% | |
| GATTGTGAACATTCTCGCTA+TGG | + | chr5.2:67997413-67997432 | MS.gene64674:CDS | 40.0% | |
| GCAAAATAATTAGGAAGCGG+TGG | + | chr5.2:67997348-67997367 | MS.gene64674:CDS | 40.0% | |
| GCAATAAACTAAGTGGCTTG+TGG | + | chr5.2:67998774-67998793 | MS.gene64674:intron | 40.0% | |
| GGAAACAATTCCCCACAAAA+TGG | - | chr5.2:67997197-67997216 | None:intergenic | 40.0% | |
| GTAATTGGAGGAAATAACCG+TGG | + | chr5.2:67997853-67997872 | MS.gene64674:CDS | 40.0% | |
| GTGATGACTATAATAGGAGG+TGG | + | chr5.2:67998250-67998269 | MS.gene64674:CDS | 40.0% | |
| TACAACGTATAGCTAATGGC+CGG | - | chr5.2:67999933-67999952 | None:intergenic | 40.0% | |
| TCAAATAAGGCAATCCGAAC+AGG | + | chr5.2:67998742-67998761 | MS.gene64674:intron | 40.0% | |
| TCCCCTAAGAAAGTAATTGG+AGG | + | chr5.2:67997841-67997860 | MS.gene64674:CDS | 40.0% | |
| TCCTCCTTGCTTACAAATAC+TGG | + | chr5.2:67998952-67998971 | MS.gene64674:CDS | 40.0% | |
| TCCTTGCTTACAAATACTGG+CGG | + | chr5.2:67998955-67998974 | MS.gene64674:CDS | 40.0% | |
| TGAACATTCTCGCTATGGTA+AGG | + | chr5.2:67997418-67997437 | MS.gene64674:intron | 40.0% | |
| TGAAGCAACAGTTGCAGTTT+CGG | - | chr5.2:67998054-67998073 | None:intergenic | 40.0% | |
| TGCAAAAGTTCGCGTTTCTA+AGG | + | chr5.2:67997882-67997901 | MS.gene64674:CDS | 40.0% | |
| TGGTACGATATTGCCTTTAG+AGG | + | chr5.2:67999482-67999501 | MS.gene64674:intron | 40.0% | |
| TGTCCCATCAAAACCTCTAA+AGG | - | chr5.2:67999498-67999517 | None:intergenic | 40.0% | |
| TTCCAATTCCAAACACTGGA+AGG | + | chr5.2:67997373-67997392 | MS.gene64674:CDS | 40.0% | |
| TTGGACATCTAGGTACCTTA+GGG | - | chr5.2:67996672-67996691 | None:intergenic | 40.0% | |
| TTGGATTTGTCTAGGTCTCT+AGG | + | chr5.2:67998886-67998905 | MS.gene64674:intron | 40.0% | |
| ! | AACCTTCCAGTGTTTGGAAT+TGG | - | chr5.2:67997378-67997397 | None:intergenic | 40.0% |
| ! | AATATCAGACTCGGTACTTG+CGG | + | chr5.2:67999881-67999900 | MS.gene64674:intron | 40.0% |
| ! | ATCAGCTTCACCGTCTTTTT+AGG | + | chr5.2:67999253-67999272 | MS.gene64674:intron | 40.0% |
| ! | ATGGTGTTGAAGAAGAGACT+TGG | + | chr5.2:67996622-67996641 | MS.gene64674:CDS | 40.0% |
| ! | CGCGTTTCTAAGGATTCTAA+TGG | + | chr5.2:67997892-67997911 | MS.gene64674:CDS | 40.0% |
| ! | GAGTTAGGCTGTTCTTCTTT+TGG | + | chr5.2:67997497-67997516 | MS.gene64674:intron | 40.0% |
| ! | GCATGTTGGTGTTCTTGTTA+AGG | + | chr5.2:67998276-67998295 | MS.gene64674:CDS | 40.0% |
| ! | GTAGTTCAAAAGCACAAGAG+TGG | - | chr5.2:67996824-67996843 | None:intergenic | 40.0% |
| ! | TGGTTTGTGTGCAGGATAAA+TGG | + | chr5.2:67999990-68000009 | MS.gene64674:intron | 40.0% |
| ! | TTCCCAATGCTTCCTTTTCA+AGG | + | chr5.2:67997213-67997232 | MS.gene64674:CDS | 40.0% |
| !! | AACTAAGTGGCTTGTGGTTT+TGG | + | chr5.2:67998780-67998799 | MS.gene64674:intron | 40.0% |
| !! | AGAAACATCTTGAGAGTGCT+GGG | + | chr5.2:67996967-67996986 | MS.gene64674:CDS | 40.0% |
| !! | AGAGACTTGGTAATGGATTC+AGG | + | chr5.2:67996635-67996654 | MS.gene64674:CDS | 40.0% |
| !! | GAGACTTGGTAATGGATTCA+GGG | + | chr5.2:67996636-67996655 | MS.gene64674:CDS | 40.0% |
| !! | GTTGGGTTCACTTTTGTTAC+AGG | + | chr5.2:67999530-67999549 | MS.gene64674:intron | 40.0% |
| !! | TAATGGATTCAGGGACTATC+AGG | + | chr5.2:67996645-67996664 | MS.gene64674:CDS | 40.0% |
| !! | TCTTTTTAGGCAGCGAAAGT+GGG | + | chr5.2:67999266-67999285 | MS.gene64674:intron | 40.0% |
| !! | TGCGTGGAGTTCATTAGTTT+TGG | + | chr5.2:67997923-67997942 | MS.gene64674:intron | 40.0% |
| !! | TTTTGGCTGCACATGCTTAT+TGG | + | chr5.2:68000092-68000111 | MS.gene64674:CDS | 40.0% |
| !!! | GTTTTGAGAATGCAGACCAT+AGG | + | chr5.2:67999339-67999358 | MS.gene64674:CDS | 40.0% |
| !!! | TGAACTTTTGGTTTGTGTGC+AGG | + | chr5.2:67999982-68000001 | MS.gene64674:intron | 40.0% |
| AACAGAACTCTTCGTCAGAC+TGG | + | chr5.2:67998319-67998338 | MS.gene64674:CDS | 45.0% | |
| AACGGTAAGAACAGGACTTG+CGG | - | chr5.2:67997542-67997561 | None:intergenic | 45.0% | |
| AATGCCTCAGTACTATGAGC+TGG | - | chr5.2:67999096-67999115 | None:intergenic | 45.0% | |
| ACCGCCAGTATTTGTAAGCA+AGG | - | chr5.2:67998959-67998978 | None:intergenic | 45.0% | |
| AGAAAAGCTGTCTTGGTGAG+AGG | - | chr5.2:67997565-67997584 | None:intergenic | 45.0% | |
| AGACACAGAAAATGGTCTCC+TGG | - | chr5.2:67999175-67999194 | None:intergenic | 45.0% | |
| AGCACTTGTTCATGCAGTTG+AGG | + | chr5.2:67999203-67999222 | MS.gene64674:CDS | 45.0% | |
| AGGGATTTCTGTTGCCAAAC+AGG | + | chr5.2:67998927-67998946 | MS.gene64674:CDS | 45.0% | |
| AGGTCTAAAAGCCTTCGGTT+TGG | - | chr5.2:67997312-67997331 | None:intergenic | 45.0% | |
| AGTCTTCCTCTTATGACTCG+AGG | - | chr5.2:67997707-67997726 | None:intergenic | 45.0% | |
| AGTGTCACACTCTGTTGAAG+AGG | + | chr5.2:67997749-67997768 | MS.gene64674:CDS | 45.0% | |
| AGTTTCGCATCGAGTCATTC+AGG | + | chr5.2:67998003-67998022 | MS.gene64674:CDS | 45.0% | |
| ATAGAGGACAGTTATGGAGG+CGG | + | chr5.2:67998228-67998247 | MS.gene64674:intron | 45.0% | |
| ATCAGATGCATTGCTAGAGG+TGG | - | chr5.2:67996889-67996908 | None:intergenic | 45.0% | |
| ATCTCTCCTCAACAAAGGAG+AGG | + | chr5.2:68000037-68000056 | MS.gene64674:CDS | 45.0% | |
| CAAAGTTTGCACCAAACCGA+AGG | + | chr5.2:67997298-67997317 | MS.gene64674:CDS | 45.0% | |
| CAATCCGAACAGGCCTTTAA+TGG | + | chr5.2:67998752-67998771 | MS.gene64674:intron | 45.0% | |
| CACAAGTGGTTGGACAACAT+TGG | - | chr5.2:68000155-68000174 | None:intergenic | 45.0% | |
| CCTTCTTTAGCCAACTTGAG+CGG | + | chr5.2:67997158-67997177 | MS.gene64674:CDS | 45.0% | |
| CGTGAAGGTCTAAAAGCCTT+CGG | - | chr5.2:67997317-67997336 | None:intergenic | 45.0% | |
| CTTGGACATCTAGGTACCTT+AGG | - | chr5.2:67996673-67996692 | None:intergenic | 45.0% | |
| GAACTCCCTCCATAGATTCA+GGG | + | chr5.2:67998908-67998927 | MS.gene64674:CDS | 45.0% | |
| GAAGCAACAGTTGCAGTTTC+GGG | - | chr5.2:67998053-67998072 | None:intergenic | 45.0% | |
| GAGGCGGTGATGACTATAAT+AGG | + | chr5.2:67998244-67998263 | MS.gene64674:CDS | 45.0% | |
| GCCAGTATTTGTAAGCAAGG+AGG | - | chr5.2:67998956-67998975 | None:intergenic | 45.0% | |
| GCGAAACTTTACTGTACGCA+AGG | - | chr5.2:67997991-67998010 | None:intergenic | 45.0% | |
| GCGGTGATGACTATAATAGG+AGG | + | chr5.2:67998247-67998266 | MS.gene64674:CDS | 45.0% | |
| GGAACGTCAACGTAAAGTTC+TGG | - | chr5.2:67998032-67998051 | None:intergenic | 45.0% | |
| GGACTTCCAATTCCAAACAC+TGG | + | chr5.2:67997369-67997388 | MS.gene64674:CDS | 45.0% | |
| GGGAGGAATGCTAGTAAGTT+AGG | + | chr5.2:67997239-67997258 | MS.gene64674:CDS | 45.0% | |
| GGGATTTCTGTTGCCAAACA+GGG | + | chr5.2:67998928-67998947 | MS.gene64674:CDS | 45.0% | |
| GGTGCAAAGAAAAGCTGTCT+TGG | - | chr5.2:67997572-67997591 | None:intergenic | 45.0% | |
| GTCTTCCTCTTATGACTCGA+GGG | - | chr5.2:67997706-67997725 | None:intergenic | 45.0% | |
| GTTCATGCAGTTGAGGAAGT+TGG | + | chr5.2:67999210-67999229 | MS.gene64674:CDS | 45.0% | |
| TCCTCAGGAGCTATTGGATA+GGG | + | chr5.2:68000069-68000088 | MS.gene64674:CDS | 45.0% | |
| TGAGATGCTACATGGTGAGA+AGG | - | chr5.2:67998433-67998452 | None:intergenic | 45.0% | |
| TGGTCCAGTGTTCTGATTCA+CGG | - | chr5.2:67999130-67999149 | None:intergenic | 45.0% | |
| TGTTCCAGCTCATAGTACTG+AGG | + | chr5.2:67999089-67999108 | MS.gene64674:CDS | 45.0% | |
| TTCAAGAAACCAGTCGAGGA+TGG | + | chr5.2:67996798-67996817 | MS.gene64674:CDS | 45.0% | |
| TTCCTCAGGAGCTATTGGAT+AGG | + | chr5.2:68000068-68000087 | MS.gene64674:CDS | 45.0% | |
| TTGAGGAAGTTGGAACTGGA+AGG | + | chr5.2:67999220-67999239 | MS.gene64674:CDS | 45.0% | |
| TTGATGCTTGACATGCTGCT+TGG | - | chr5.2:68000131-68000150 | None:intergenic | 45.0% | |
| TTGCGTGCAATGTATCGTGA+AGG | - | chr5.2:67997332-67997351 | None:intergenic | 45.0% | |
| ! | CAAGGGAAGAAGCTGATTCA+TGG | - | chr5.2:67998999-67999018 | None:intergenic | 45.0% |
| ! | GAACTTTTGCAGATGAGCCA+CGG | - | chr5.2:67997873-67997892 | None:intergenic | 45.0% |
| ! | GAGAAACATCTTGAGAGTGC+TGG | + | chr5.2:67996966-67996985 | MS.gene64674:CDS | 45.0% |
| ! | GGAGCTATTGGATAGGGTTT+TGG | + | chr5.2:68000075-68000094 | MS.gene64674:CDS | 45.0% |
| !! | CTTCCTTTTCAAGGAATGGG+AGG | + | chr5.2:67997222-67997241 | MS.gene64674:CDS | 45.0% |
| !! | GTCTTTTTAGGCAGCGAAAG+TGG | + | chr5.2:67999265-67999284 | MS.gene64674:intron | 45.0% |
| !! | GTTGGAACTGGAAGGTACTA+TGG | + | chr5.2:67999228-67999247 | MS.gene64674:intron | 45.0% |
| AAGCAAGGAGGAACCCTGTT+TGG | - | chr5.2:67998944-67998963 | None:intergenic | 50.0% | |
| ACCCTATCCAATAGCTCCTG+AGG | - | chr5.2:68000073-68000092 | None:intergenic | 50.0% | |
| ACTCTCCTTCAGCAACTCAC+CGG | - | chr5.2:67996859-67996878 | None:intergenic | 50.0% | |
| AGCTGTCTTGGTGAGAGGAA+CGG | - | chr5.2:67997560-67997579 | None:intergenic | 50.0% | |
| AGGGGTTCGATGCTAACTCA+TGG | + | chr5.2:67997787-67997806 | MS.gene64674:CDS | 50.0% | |
| ATAGGAGGTGGAGTGCATGT+TGG | + | chr5.2:67998262-67998281 | MS.gene64674:CDS | 50.0% | |
| ATGTAGCATCTCAGCCTACC+AGG | + | chr5.2:67998440-67998459 | MS.gene64674:CDS | 50.0% | |
| CTGTTCAACTTTCGCTCACC+TGG | - | chr5.2:67998461-67998480 | None:intergenic | 50.0% | |
| GCAGTTGAGGAAGTTGGAAC+TGG | + | chr5.2:67999216-67999235 | MS.gene64674:CDS | 50.0% | |
| GCTTCTCCAGTTGTTTGTGC+TGG | + | chr5.2:67998403-67998422 | MS.gene64674:CDS | 50.0% | |
| GGAACTCCCTCCATAGATTC+AGG | + | chr5.2:67998907-67998926 | MS.gene64674:CDS | 50.0% | |
| GGAGAAGCTTGAGAAGAGCT+AGG | - | chr5.2:67998391-67998410 | None:intergenic | 50.0% | |
| GGATCACCAGCACAAACAAC+TGG | - | chr5.2:67998412-67998431 | None:intergenic | 50.0% | |
| GGTCCAGTGTTCTGATTCAC+GGG | - | chr5.2:67999129-67999148 | None:intergenic | 50.0% | |
| GGTTCGATGCTAACTCATGG+TGG | + | chr5.2:67997790-67997809 | MS.gene64674:CDS | 50.0% | |
| GTGAGAGGAACGGTAAGAAC+AGG | - | chr5.2:67997550-67997569 | None:intergenic | 50.0% | |
| GTTCCCGTGAATCAGAACAC+TGG | + | chr5.2:67999123-67999142 | MS.gene64674:CDS | 50.0% | |
| TCAACTTTCGCTCACCTGGT+AGG | - | chr5.2:67998457-67998476 | None:intergenic | 50.0% | |
| TCCAATAGCTCCTGAGGAAC+TGG | - | chr5.2:68000067-68000086 | None:intergenic | 50.0% | |
| TCGATGCTAACTCATGGTGG+AGG | + | chr5.2:67997793-67997812 | MS.gene64674:CDS | 50.0% | |
| TGCGTTCAAGAAACCAGTCG+AGG | + | chr5.2:67996794-67996813 | MS.gene64674:CDS | 50.0% | |
| TGGAACAGAAACTAGCGCTC+CGG | - | chr5.2:67999076-67999095 | None:intergenic | 50.0% | |
| TGGAGCAACCTTCCAGTGTT+TGG | - | chr5.2:67997384-67997403 | None:intergenic | 50.0% | |
| TGGTAGGCTGAGATGCTACA+TGG | - | chr5.2:67998441-67998460 | None:intergenic | 50.0% | |
| TTTAGCCGGTGAGTTGCTGA+AGG | + | chr5.2:67996851-67996870 | MS.gene64674:CDS | 50.0% | |
| ! | GCTTGACATGCTGCTTGGAT+TGG | - | chr5.2:68000126-68000145 | None:intergenic | 50.0% |
| ! | TGACATGCTGCTTGGATTGG+TGG | - | chr5.2:68000123-68000142 | None:intergenic | 50.0% |
| !! | CCGCTCAAGTTGGCTAAAGA+AGG | - | chr5.2:67997161-67997180 | None:intergenic | 50.0% |
| ATAGCTAATGGCCGGTGTGC+AGG | - | chr5.2:67999925-67999944 | None:intergenic | 55.0% | |
| CAGGGACTATCAGGTCCCTA+AGG | + | chr5.2:67996654-67996673 | MS.gene64674:CDS | 55.0% | |
| CATCACGAGGCTGACAGTTC+AGG | + | chr5.2:67997107-67997126 | MS.gene64674:CDS | 55.0% | |
| CATTCACACACCCTGCACAC+CGG | + | chr5.2:67999911-67999930 | MS.gene64674:intron | 55.0% | |
| CTGAACTGTCAGCCTCGTGA+TGG | - | chr5.2:67997109-67997128 | None:intergenic | 55.0% | |
| GCCAGTTCCTCAGGAGCTAT+TGG | + | chr5.2:68000063-68000082 | MS.gene64674:CDS | 55.0% | |
| GGCTGTCCTCTCCTTTGTTG+AGG | - | chr5.2:68000046-68000065 | None:intergenic | 55.0% | |
| GGTTCGACGCTGTACAAGCT+CGG | - | chr5.2:67999154-67999173 | None:intergenic | 55.0% | |
| TAGCTAATGGCCGGTGTGCA+GGG | - | chr5.2:67999924-67999943 | None:intergenic | 55.0% | |
| TGCGTCCCTCGAGTCATAAG+AGG | + | chr5.2:67997698-67997717 | MS.gene64674:CDS | 55.0% | |
| ! | AGCTTGTACAGCGTCGAACC+AGG | + | chr5.2:67999154-67999173 | MS.gene64674:CDS | 55.0% |
| CAAGAGTGGCCATCCTCGAC+TGG | - | chr5.2:67996810-67996829 | None:intergenic | 60.0% | |
| CGACGCTGTACAAGCTCGGA+TGG | - | chr5.2:67999150-67999169 | None:intergenic | 60.0% | |
| GAGAGGACAGCCAGTTCCTC+AGG | + | chr5.2:68000054-68000073 | MS.gene64674:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 67996622 | 68000183 | 67996622 | ID=MS.gene64674 |
| chr5.2 | mRNA | 67996622 | 68000183 | 67996622 | ID=MS.gene64674.t1;Parent=MS.gene64674 |
| chr5.2 | exon | 67996622 | 67996702 | 67996622 | ID=MS.gene64674.t1.exon1;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 67996622 | 67996702 | 67996622 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| chr5.2 | exon | 67996786 | 67997434 | 67996786 | ID=MS.gene64674.t1.exon2;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 67996786 | 67997434 | 67996786 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| chr5.2 | exon | 67997689 | 67997913 | 67997689 | ID=MS.gene64674.t1.exon3;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 67997689 | 67997913 | 67997689 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| chr5.2 | exon | 67998000 | 67998079 | 67998000 | ID=MS.gene64674.t1.exon4;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 67998000 | 67998079 | 67998000 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| chr5.2 | exon | 67998232 | 67998461 | 67998232 | ID=MS.gene64674.t1.exon5;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 67998232 | 67998461 | 67998232 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| chr5.2 | exon | 67998900 | 67999241 | 67998900 | ID=MS.gene64674.t1.exon6;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 67998900 | 67999241 | 67998900 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| chr5.2 | exon | 67999316 | 67999379 | 67999316 | ID=MS.gene64674.t1.exon7;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 67999316 | 67999379 | 67999316 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| chr5.2 | exon | 68000004 | 68000183 | 68000004 | ID=MS.gene64674.t1.exon8;Parent=MS.gene64674.t1 |
| chr5.2 | CDS | 68000004 | 68000183 | 68000004 | ID=cds.MS.gene64674.t1;Parent=MS.gene64674.t1 |
| Gene Sequence |
| Protein sequence |
