Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64686.t1 | P52575.1 | 99.7 | 318 | 1 | 0 | 1 | 318 | 1 | 318 | 4.80E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64686.t1 | P52575 | 99.7 | 318 | 1 | 0 | 1 | 318 | 1 | 318 | 1.2e-180 | 633.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64686.t1 | G7KEZ1 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 2.9e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049147 | MS.gene64686 | 0.811568 | 6.56E-51 | -1.69E-46 |
| MS.gene049259 | MS.gene64686 | 0.809317 | 2.01E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene64686 | 0.812279 | 4.59E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene64686 | 0.83154 | 1.58E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene64686 | 0.801196 | 1.01E-48 | -1.69E-46 |
| MS.gene050380 | MS.gene64686 | 0.803236 | 3.84E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene64686 | 0.849958 | 2.31E-60 | -1.69E-46 |
| MS.gene05079 | MS.gene64686 | 0.800503 | 1.40E-48 | -1.69E-46 |
| MS.gene05104 | MS.gene64686 | 0.812309 | 4.52E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene64686 | 0.846498 | 2.09E-59 | -1.69E-46 |
| MS.gene051138 | MS.gene64686 | 0.820723 | 5.90E-53 | -1.69E-46 |
| MS.gene051632 | MS.gene64686 | 0.8061 | 9.69E-50 | -1.69E-46 |
| MS.gene051863 | MS.gene64686 | 0.800611 | 1.33E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene64686 | 0.853053 | 3.08E-61 | -1.69E-46 |
| MS.gene053488 | MS.gene64686 | 0.843156 | 1.67E-58 | -1.69E-46 |
| MS.gene053561 | MS.gene64686 | 0.830894 | 2.27E-55 | -1.69E-46 |
| MS.gene054708 | MS.gene64686 | 0.813987 | 1.94E-51 | -1.69E-46 |
| MS.gene055124 | MS.gene64686 | 0.890895 | 6.51E-74 | -1.69E-46 |
| MS.gene055154 | MS.gene64686 | 0.850056 | 2.17E-60 | -1.69E-46 |
| MS.gene055202 | MS.gene64686 | 0.82666 | 2.40E-54 | -1.69E-46 |
| MS.gene055959 | MS.gene64686 | 0.865539 | 5.49E-65 | -1.69E-46 |
| MS.gene056224 | MS.gene64686 | 0.804057 | 2.59E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene64686 | 0.824955 | 6.10E-54 | -1.69E-46 |
| MS.gene056856 | MS.gene64686 | 0.817806 | 2.72E-52 | -1.69E-46 |
| MS.gene057550 | MS.gene64686 | 0.810223 | 1.28E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene64686 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene058093 | MS.gene64686 | 0.860774 | 1.63E-63 | -1.69E-46 |
| MS.gene058099 | MS.gene64686 | 0.863134 | 3.09E-64 | -1.69E-46 |
| MS.gene058108 | MS.gene64686 | 0.860233 | 2.38E-63 | -1.69E-46 |
| MS.gene058109 | MS.gene64686 | 0.84656 | 2.01E-59 | -1.69E-46 |
| MS.gene058170 | MS.gene64686 | 0.803697 | 3.08E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene64686 | 0.878706 | 2.26E-69 | -1.69E-46 |
| MS.gene058173 | MS.gene64686 | 0.875353 | 3.29E-68 | -1.69E-46 |
| MS.gene058174 | MS.gene64686 | 0.805807 | 1.12E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene64686 | 0.878501 | 2.67E-69 | -1.69E-46 |
| MS.gene058176 | MS.gene64686 | 0.83127 | 1.84E-55 | -1.69E-46 |
| MS.gene058179 | MS.gene64686 | 0.872229 | 3.73E-67 | -1.69E-46 |
| MS.gene058180 | MS.gene64686 | 0.841085 | 5.89E-58 | -1.69E-46 |
| MS.gene058840 | MS.gene64686 | 0.851431 | 8.92E-61 | -1.69E-46 |
| MS.gene059037 | MS.gene64686 | 0.883872 | 3.10E-71 | -1.69E-46 |
| MS.gene059038 | MS.gene64686 | 0.852443 | 4.60E-61 | -1.69E-46 |
| MS.gene059044 | MS.gene64686 | 0.850058 | 2.17E-60 | -1.69E-46 |
| MS.gene059045 | MS.gene64686 | 0.83167 | 1.46E-55 | -1.69E-46 |
| MS.gene059697 | MS.gene64686 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene059943 | MS.gene64686 | 0.800196 | 1.61E-48 | -1.69E-46 |
| MS.gene06074 | MS.gene64686 | 0.800354 | 1.50E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64686.t1 | MTR_5g020800 | 99.057 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| MS.gene64686.t1 | MTR_5g020760 | 98.742 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 0.0 | 646 |
| MS.gene64686.t1 | MTR_5g020760 | 98.864 | 264 | 3 | 0 | 1 | 264 | 1 | 264 | 0.0 | 535 |
| MS.gene64686.t1 | MTR_5g020740 | 59.688 | 320 | 116 | 4 | 1 | 318 | 1 | 309 | 8.11e-135 | 385 |
| MS.gene64686.t1 | MTR_3g111980 | 57.632 | 321 | 122 | 4 | 1 | 318 | 1 | 310 | 9.93e-124 | 357 |
| MS.gene64686.t1 | MTR_3g111990 | 55.486 | 319 | 130 | 3 | 1 | 318 | 1 | 308 | 6.09e-121 | 350 |
| MS.gene64686.t1 | MTR_3g116840 | 54.603 | 315 | 131 | 3 | 5 | 318 | 9 | 312 | 2.54e-117 | 341 |
| MS.gene64686.t1 | MTR_4g070370 | 49.191 | 309 | 145 | 3 | 7 | 314 | 10 | 307 | 3.13e-102 | 303 |
| MS.gene64686.t1 | MTR_4g070340 | 49.038 | 312 | 147 | 3 | 6 | 316 | 8 | 308 | 2.68e-98 | 293 |
| MS.gene64686.t1 | MTR_4g070340 | 48.077 | 312 | 145 | 4 | 6 | 316 | 8 | 303 | 5.49e-93 | 279 |
| MS.gene64686.t1 | MTR_4g070340 | 50.201 | 249 | 123 | 1 | 69 | 316 | 11 | 259 | 7.46e-82 | 249 |
| MS.gene64686.t1 | MTR_4g070360 | 39.937 | 318 | 177 | 3 | 4 | 318 | 3 | 309 | 1.42e-81 | 249 |
| MS.gene64686.t1 | MTR_5g027290 | 41.745 | 321 | 167 | 5 | 4 | 317 | 3 | 310 | 1.43e-80 | 247 |
| MS.gene64686.t1 | MTR_5g027240 | 42.368 | 321 | 165 | 5 | 4 | 317 | 3 | 310 | 1.05e-79 | 245 |
| MS.gene64686.t1 | MTR_8g071130 | 40.123 | 324 | 171 | 8 | 4 | 318 | 3 | 312 | 1.43e-73 | 229 |
| MS.gene64686.t1 | MTR_3g008140 | 39.117 | 317 | 178 | 5 | 2 | 318 | 3 | 304 | 2.14e-72 | 226 |
| MS.gene64686.t1 | MTR_3g007970 | 38.679 | 318 | 179 | 6 | 2 | 318 | 3 | 305 | 1.68e-71 | 224 |
| MS.gene64686.t1 | MTR_3g008100 | 38.318 | 321 | 176 | 6 | 2 | 318 | 3 | 305 | 1.48e-69 | 219 |
| MS.gene64686.t1 | MTR_3g008100 | 37.695 | 321 | 171 | 6 | 2 | 318 | 3 | 298 | 1.14e-65 | 209 |
| MS.gene64686.t1 | MTR_1g093720 | 34.796 | 319 | 193 | 4 | 3 | 318 | 12 | 318 | 2.37e-64 | 207 |
| MS.gene64686.t1 | MTR_3g008100 | 37.688 | 199 | 104 | 4 | 2 | 197 | 3 | 184 | 2.11e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64686.t1 | AT1G75280 | 53.438 | 320 | 135 | 4 | 1 | 317 | 1 | 309 | 2.63e-115 | 335 |
| MS.gene64686.t1 | AT1G75290 | 52.960 | 321 | 136 | 5 | 1 | 317 | 1 | 310 | 3.05e-115 | 336 |
| MS.gene64686.t1 | AT4G39230 | 52.978 | 319 | 138 | 3 | 1 | 318 | 1 | 308 | 1.12e-114 | 334 |
| MS.gene64686.t1 | AT1G75290 | 52.960 | 321 | 136 | 5 | 1 | 317 | 28 | 337 | 1.22e-114 | 335 |
| MS.gene64686.t1 | AT1G75300 | 49.552 | 335 | 137 | 6 | 1 | 317 | 1 | 321 | 6.71e-104 | 307 |
| MS.gene64686.t1 | AT1G19540 | 48.903 | 319 | 147 | 5 | 5 | 318 | 3 | 310 | 6.70e-99 | 294 |
| MS.gene64686.t1 | AT4G34540 | 37.342 | 316 | 181 | 2 | 4 | 318 | 7 | 306 | 2.13e-79 | 244 |
| MS.gene64686.t1 | AT1G19540 | 49.621 | 264 | 118 | 4 | 5 | 264 | 3 | 255 | 3.99e-79 | 242 |
| MS.gene64686.t1 | AT1G32100 | 39.752 | 322 | 174 | 5 | 4 | 318 | 9 | 317 | 7.03e-77 | 238 |
| MS.gene64686.t1 | AT4G13660 | 40.683 | 322 | 171 | 5 | 4 | 318 | 9 | 317 | 4.15e-76 | 236 |
| MS.gene64686.t1 | AT4G13660 | 40.683 | 322 | 171 | 5 | 4 | 318 | 9 | 317 | 4.15e-76 | 236 |
Find 70 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGCTCTTCCTTGGTTTC+AGG | 0.170156 | 5.2:-12028398 | None:intergenic |
| AAAGAGCAATAACCTCATTT+TGG | 0.179311 | 5.2:-12029258 | None:intergenic |
| CGGGACAAAGTTGTCATTCT+TGG | 0.251205 | 5.2:+12029014 | MS.gene64686:CDS |
| ATTGATAATTACCAATCTTT+AGG | 0.253564 | 5.2:+12028419 | MS.gene64686:CDS |
| TTCAGAAGCTTCAATATCTT+TGG | 0.254251 | 5.2:-12029668 | None:intergenic |
| AAAATGAGGTTATTGCTCTT+TGG | 0.277659 | 5.2:+12029260 | MS.gene64686:CDS |
| CTTTGTTGCCACGCCTTTAC+CGG | 0.290435 | 5.2:+12028945 | MS.gene64686:CDS |
| AATTCTTGGGGAGTCTAATA+TGG | 0.296473 | 5.2:-12029228 | None:intergenic |
| GAAAACAAAATCCTCATTCT+TGG | 0.297123 | 5.2:+12028251 | MS.gene64686:CDS |
| TACCATTCACAACAAATAAA+AGG | 0.300864 | 5.2:+12029619 | MS.gene64686:CDS |
| AAATGAGGTTATTGCTCTTT+GGG | 0.307200 | 5.2:+12029261 | MS.gene64686:CDS |
| CCATTGGAAGACACATAGTT+TGG | 0.324909 | 5.2:+12028285 | MS.gene64686:CDS |
| GGGATCATTTGCTGCTCTAA+TGG | 0.371239 | 5.2:-12029185 | None:intergenic |
| ATTCCCTCATAACTATTTGT+TGG | 0.383223 | 5.2:+12029591 | MS.gene64686:CDS |
| TTAGCAGCTGTAATAAGCTT+TGG | 0.390009 | 5.2:-12028374 | None:intergenic |
| ATCCTCATTCTTGGACCAAC+AGG | 0.392597 | 5.2:+12028260 | MS.gene64686:CDS |
| CGGTTACTTCTTACGTAACT+TGG | 0.420584 | 5.2:+12028965 | MS.gene64686:CDS |
| AGGAAATCCAACATATGCTT+TGG | 0.425743 | 5.2:+12028322 | MS.gene64686:CDS |
| CTTCGGCTTCAATTACTCTT+CGG | 0.426997 | 5.2:-12028905 | None:intergenic |
| ATTAAAGCAATTAAAGAAGC+TGG | 0.439051 | 5.2:+12028643 | MS.gene64686:CDS |
| TTTGGCTTGTTAACATTGCC+AGG | 0.439374 | 5.2:-12028356 | None:intergenic |
| AATGCCAACAAATAGTTATG+AGG | 0.443320 | 5.2:-12029595 | None:intergenic |
| GTAGAATAACTCCTAAAGAT+TGG | 0.448622 | 5.2:-12028430 | None:intergenic |
| ATTATCAATAAGCTCTTCCT+TGG | 0.453266 | 5.2:-12028405 | None:intergenic |
| TGATCATGAAACTCTTGTTA+AGG | 0.455304 | 5.2:+12028552 | MS.gene64686:CDS |
| TTTCTAACCAAAGCATATGT+TGG | 0.458494 | 5.2:-12028329 | None:intergenic |
| GCAGTGGTGTATGTCACATC+TGG | 0.461849 | 5.2:-12029697 | None:intergenic |
| GAAGCTTCAATATCTTTGGC+TGG | 0.462307 | 5.2:-12029664 | None:intergenic |
| TAAAGAAGCTGGAAACGTTA+AGG | 0.465104 | 5.2:+12028654 | MS.gene64686:CDS |
| ACAGCTTTGTTCAATGTGTT+GGG | 0.466334 | 5.2:-12029205 | None:intergenic |
| CAAGTTACGTAAGAAGTAAC+CGG | 0.467564 | 5.2:-12028964 | None:intergenic |
| CATTGGAAGACACATAGTTT+GGG | 0.475312 | 5.2:+12028286 | MS.gene64686:CDS |
| AAAGTTGTCATTCTTGGAGA+TGG | 0.476919 | 5.2:+12029020 | MS.gene64686:CDS |
| GACAGCTTTGTTCAATGTGT+TGG | 0.480648 | 5.2:-12029206 | None:intergenic |
| TAGACTACTAATTGAGGATC+AGG | 0.481816 | 5.2:+12028612 | MS.gene64686:CDS |
| ACGTAAGAAGTAACCGGTAA+AGG | 0.493799 | 5.2:-12028958 | None:intergenic |
| GACATTGTGATCTGTGCTGC+TGG | 0.497025 | 5.2:+12028589 | MS.gene64686:CDS |
| CTTGGACCAACAGGAGCCAT+TGG | 0.521208 | 5.2:+12028269 | MS.gene64686:CDS |
| CGGTAAAGGCGTGGCAACAA+AGG | 0.521509 | 5.2:-12028944 | None:intergenic |
| CGACACAACTGATCCTCCTC+GGG | 0.523381 | 5.2:+12028995 | MS.gene64686:CDS |
| TGAGAAAACTTATGTTTCAG+AGG | 0.523834 | 5.2:+12029306 | MS.gene64686:CDS |
| GAATTATTTGACCCAAAATG+AGG | 0.524380 | 5.2:+12029246 | MS.gene64686:CDS |
| CAAGTTCTCAAAGATATTCA+AGG | 0.524774 | 5.2:+12029331 | MS.gene64686:CDS |
| AACTTGTCTAACTGGCTCAA+CGG | 0.536329 | 5.2:-12028862 | None:intergenic |
| AGCTGCTAATCCTGAAACCA+AGG | 0.544614 | 5.2:+12028388 | MS.gene64686:CDS |
| GTTTGGGCAAGTATTAAAGC+AGG | 0.544920 | 5.2:+12028302 | MS.gene64686:CDS |
| CTCCTGTTGGTCCAAGAATG+AGG | 0.553264 | 5.2:-12028262 | None:intergenic |
| GTAAGTGTAAGGAACTCCTT+CGG | 0.556646 | 5.2:-12028922 | None:intergenic |
| CTTGGAGATGGAAATGTGAA+AGG | 0.559099 | 5.2:+12029032 | MS.gene64686:CDS |
| CCAAACTATGTGTCTTCCAA+TGG | 0.559467 | 5.2:-12028285 | None:intergenic |
| TGTCTTCCAATGGCTCCTGT+TGG | 0.561834 | 5.2:-12028275 | None:intergenic |
| ACGTCTAGCCCAAATTCAGA+TGG | 0.563905 | 5.2:-12028825 | None:intergenic |
| TGGCAACAAAGGTAAGTGTA+AGG | 0.564377 | 5.2:-12028933 | None:intergenic |
| TCGACACAACTGATCCTCCT+CGG | 0.565344 | 5.2:+12028994 | MS.gene64686:CDS |
| GGTGTATGTCACATCTGGAT+AGG | 0.574765 | 5.2:-12029692 | None:intergenic |
| ATGCCAACAAATAGTTATGA+GGG | 0.580723 | 5.2:-12029594 | None:intergenic |
| ATCTGAATTTGGGCTAGACG+TGG | 0.583561 | 5.2:+12028827 | MS.gene64686:CDS |
| TGCTGGTAGACTACTAATTG+AGG | 0.589907 | 5.2:+12028606 | MS.gene64686:CDS |
| ATATGTAACTGAGGCTGATG+TGG | 0.591299 | 5.2:+12029153 | MS.gene64686:CDS |
| TTTGGGTCAAATAATTCTTG+GGG | 0.592555 | 5.2:-12029240 | None:intergenic |
| ATTCAAATATTCATCAGCAG+TGG | 0.611923 | 5.2:-12029713 | None:intergenic |
| CGTCTAGCCCAAATTCAGAT+GGG | 0.623219 | 5.2:-12028824 | None:intergenic |
| GCTAGACGTGGACCGTCATG+AGG | 0.623228 | 5.2:+12028839 | MS.gene64686:CDS |
| AGAAGTAACCGGTAAAGGCG+TGG | 0.632726 | 5.2:-12028953 | None:intergenic |
| CGAAGAGTAATTGAAGCCGA+AGG | 0.653960 | 5.2:+12028906 | MS.gene64686:CDS |
| TTCAGGAGCATATGTAACTG+AGG | 0.661860 | 5.2:+12029144 | MS.gene64686:intron |
| CTGGCTCAACGGCCTCATGA+CGG | 0.663092 | 5.2:-12028851 | None:intergenic |
| ATGACAACTTTGTCCCGAGG+AGG | 0.669433 | 5.2:-12029008 | None:intergenic |
| AGAATGACAACTTTGTCCCG+AGG | 0.692025 | 5.2:-12029011 | None:intergenic |
| TATGTAACTGAGGCTGATGT+GGG | 0.693471 | 5.2:+12029154 | MS.gene64686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTGAACTTATTTAC+TGG | - | chr5.2:12028704-12028723 | None:intergenic | 20.0% |
| !! | TTAAATTGACCTAATCAATA+TGG | + | chr5.2:12028504-12028523 | MS.gene64686:intron | 20.0% |
| !!! | ATTGATAATTACCAATCTTT+AGG | + | chr5.2:12028419-12028438 | MS.gene64686:CDS | 20.0% |
| ! | AATTATACCTTACTCATTTC+AGG | + | chr5.2:12029127-12029146 | MS.gene64686:intron | 25.0% |
| ! | ATTAAAGCAATTAAAGAAGC+TGG | + | chr5.2:12028643-12028662 | MS.gene64686:CDS | 25.0% |
| ! | CATCAACTATGATTGATTAA+TGG | - | chr5.2:12029401-12029420 | None:intergenic | 25.0% |
| ! | TACCATTCACAACAAATAAA+AGG | + | chr5.2:12029619-12029638 | MS.gene64686:CDS | 25.0% |
| !! | AAATTTTTCCCATCTGAATT+TGG | + | chr5.2:12028816-12028835 | MS.gene64686:CDS | 25.0% |
| !! | AATTTTTCCCATCTGAATTT+GGG | + | chr5.2:12028817-12028836 | MS.gene64686:CDS | 25.0% |
| !!! | ATTTTGGGTCAAATAATTCT+TGG | - | chr5.2:12029245-12029264 | None:intergenic | 25.0% |
| !!! | TTTTGGGTCAAATAATTCTT+GGG | - | chr5.2:12029244-12029263 | None:intergenic | 25.0% |
| AAAATGAGGTTATTGCTCTT+TGG | + | chr5.2:12029260-12029279 | MS.gene64686:CDS | 30.0% | |
| AAAGCCATGCAATTATTTGA+CGG | + | chr5.2:12029460-12029479 | MS.gene64686:intron | 30.0% | |
| AAATGAGGTTATTGCTCTTT+GGG | + | chr5.2:12029261-12029280 | MS.gene64686:CDS | 30.0% | |
| AATGCCAACAAATAGTTATG+AGG | - | chr5.2:12029598-12029617 | None:intergenic | 30.0% | |
| ATGCCAACAAATAGTTATGA+GGG | - | chr5.2:12029597-12029616 | None:intergenic | 30.0% | |
| ATTATCAATAAGCTCTTCCT+TGG | - | chr5.2:12028408-12028427 | None:intergenic | 30.0% | |
| ATTCAAATATTCATCAGCAG+TGG | - | chr5.2:12029716-12029735 | None:intergenic | 30.0% | |
| ATTCCCTCATAACTATTTGT+TGG | + | chr5.2:12029591-12029610 | MS.gene64686:CDS | 30.0% | |
| CAAGTTCTCAAAGATATTCA+AGG | + | chr5.2:12029331-12029350 | MS.gene64686:CDS | 30.0% | |
| CTTAGTAATAACTCCTTTGA+TGG | + | chr5.2:12028739-12028758 | MS.gene64686:intron | 30.0% | |
| GAAAACAAAATCCTCATTCT+TGG | + | chr5.2:12028251-12028270 | MS.gene64686:CDS | 30.0% | |
| GAATTATTTGACCCAAAATG+AGG | + | chr5.2:12029246-12029265 | MS.gene64686:CDS | 30.0% | |
| GTAGAATAACTCCTAAAGAT+TGG | - | chr5.2:12028433-12028452 | None:intergenic | 30.0% | |
| GTTATTACTAAGAGTCTATC+TGG | - | chr5.2:12028731-12028750 | None:intergenic | 30.0% | |
| TCTTCAAAAACTTGTCTAAC+TGG | - | chr5.2:12028873-12028892 | None:intergenic | 30.0% | |
| TGAGAAAACTTATGTTTCAG+AGG | + | chr5.2:12029306-12029325 | MS.gene64686:CDS | 30.0% | |
| TGATCATGAAACTCTTGTTA+AGG | + | chr5.2:12028552-12028571 | MS.gene64686:CDS | 30.0% | |
| TTCAGAAGCTTCAATATCTT+TGG | - | chr5.2:12029671-12029690 | None:intergenic | 30.0% | |
| TTTCTAACCAAAGCATATGT+TGG | - | chr5.2:12028332-12028351 | None:intergenic | 30.0% | |
| TTTGGGTCAAATAATTCTTG+GGG | - | chr5.2:12029243-12029262 | None:intergenic | 30.0% | |
| ! | AAAGAGCAATAACCTCATTT+TGG | - | chr5.2:12029261-12029280 | None:intergenic | 30.0% |
| ! | AAGAGCAATAACCTCATTTT+GGG | - | chr5.2:12029260-12029279 | None:intergenic | 30.0% |
| !!! | CTCCTTTTATTTGTTGTGAA+TGG | - | chr5.2:12029624-12029643 | None:intergenic | 30.0% |
| AAAGTTGTCATTCTTGGAGA+TGG | + | chr5.2:12029020-12029039 | MS.gene64686:CDS | 35.0% | |
| AATTCTTGGGGAGTCTAATA+TGG | - | chr5.2:12029231-12029250 | None:intergenic | 35.0% | |
| AGCACAAATCTAACCATCAA+AGG | - | chr5.2:12028755-12028774 | None:intergenic | 35.0% | |
| AGGAAATCCAACATATGCTT+TGG | + | chr5.2:12028322-12028341 | MS.gene64686:CDS | 35.0% | |
| ATATGCTCCTGAAATGAGTA+AGG | - | chr5.2:12029137-12029156 | None:intergenic | 35.0% | |
| CAAGTTACGTAAGAAGTAAC+CGG | - | chr5.2:12028967-12028986 | None:intergenic | 35.0% | |
| CATTGGAAGACACATAGTTT+GGG | + | chr5.2:12028286-12028305 | MS.gene64686:CDS | 35.0% | |
| TAAAGAAGCTGGAAACGTTA+AGG | + | chr5.2:12028654-12028673 | MS.gene64686:CDS | 35.0% | |
| TACACCGTCAAATAATTGCA+TGG | - | chr5.2:12029467-12029486 | None:intergenic | 35.0% | |
| TAGACTACTAATTGAGGATC+AGG | + | chr5.2:12028612-12028631 | MS.gene64686:CDS | 35.0% | |
| TTAGCAGCTGTAATAAGCTT+TGG | - | chr5.2:12028377-12028396 | None:intergenic | 35.0% | |
| ! | CTCTTTGGGAGAAAAAGATT+GGG | + | chr5.2:12029275-12029294 | MS.gene64686:CDS | 35.0% |
| ! | GAGTCAAAGCCATATTGATT+AGG | - | chr5.2:12028516-12028535 | None:intergenic | 35.0% |
| !! | ACAGCTTTGTTCAATGTGTT+GGG | - | chr5.2:12029208-12029227 | None:intergenic | 35.0% |
| ACGTAAGAAGTAACCGGTAA+AGG | - | chr5.2:12028961-12028980 | None:intergenic | 40.0% | |
| ATAAGCTCTTCCTTGGTTTC+AGG | - | chr5.2:12028401-12028420 | None:intergenic | 40.0% | |
| ATATGTAACTGAGGCTGATG+TGG | + | chr5.2:12029153-12029172 | MS.gene64686:CDS | 40.0% | |
| CCAAACTATGTGTCTTCCAA+TGG | - | chr5.2:12028288-12028307 | None:intergenic | 40.0% | |
| CCATTGGAAGACACATAGTT+TGG | + | chr5.2:12028285-12028304 | MS.gene64686:CDS | 40.0% | |
| CGGTTACTTCTTACGTAACT+TGG | + | chr5.2:12028965-12028984 | MS.gene64686:CDS | 40.0% | |
| CTTCGGCTTCAATTACTCTT+CGG | - | chr5.2:12028908-12028927 | None:intergenic | 40.0% | |
| CTTGGAGATGGAAATGTGAA+AGG | + | chr5.2:12029032-12029051 | MS.gene64686:CDS | 40.0% | |
| GAAGCTTCAATATCTTTGGC+TGG | - | chr5.2:12029667-12029686 | None:intergenic | 40.0% | |
| GCTTTGGTTAGAAAAACACC+TGG | + | chr5.2:12028338-12028357 | MS.gene64686:CDS | 40.0% | |
| GTAAGTGTAAGGAACTCCTT+CGG | - | chr5.2:12028925-12028944 | None:intergenic | 40.0% | |
| GTTTGGGCAAGTATTAAAGC+AGG | + | chr5.2:12028302-12028321 | MS.gene64686:CDS | 40.0% | |
| TATGTAACTGAGGCTGATGT+GGG | + | chr5.2:12029154-12029173 | MS.gene64686:CDS | 40.0% | |
| TGCTGGTAGACTACTAATTG+AGG | + | chr5.2:12028606-12028625 | MS.gene64686:CDS | 40.0% | |
| TGGCAACAAAGGTAAGTGTA+AGG | - | chr5.2:12028936-12028955 | None:intergenic | 40.0% | |
| ! | AACTTGTCTAACTGGCTCAA+CGG | - | chr5.2:12028865-12028884 | None:intergenic | 40.0% |
| ! | GCTCTTTGGGAGAAAAAGAT+TGG | + | chr5.2:12029274-12029293 | MS.gene64686:CDS | 40.0% |
| ! | TTCAGGAGCATATGTAACTG+AGG | + | chr5.2:12029144-12029163 | MS.gene64686:intron | 40.0% |
| !! | AATATGGCTTTGACTCTGCA+GGG | + | chr5.2:12028520-12028539 | MS.gene64686:intron | 40.0% |
| !! | GACAGCTTTGTTCAATGTGT+TGG | - | chr5.2:12029209-12029228 | None:intergenic | 40.0% |
| !! | TTTGGCTTGTTAACATTGCC+AGG | - | chr5.2:12028359-12028378 | None:intergenic | 40.0% |
| ACGTCTAGCCCAAATTCAGA+TGG | - | chr5.2:12028828-12028847 | None:intergenic | 45.0% | |
| AGAATGACAACTTTGTCCCG+AGG | - | chr5.2:12029014-12029033 | None:intergenic | 45.0% | |
| AGCTGCTAATCCTGAAACCA+AGG | + | chr5.2:12028388-12028407 | MS.gene64686:CDS | 45.0% | |
| ATCCTCATTCTTGGACCAAC+AGG | + | chr5.2:12028260-12028279 | MS.gene64686:CDS | 45.0% | |
| CGAAGAGTAATTGAAGCCGA+AGG | + | chr5.2:12028906-12028925 | MS.gene64686:CDS | 45.0% | |
| CGGGACAAAGTTGTCATTCT+TGG | + | chr5.2:12029014-12029033 | MS.gene64686:CDS | 45.0% | |
| CGTCTAGCCCAAATTCAGAT+GGG | - | chr5.2:12028827-12028846 | None:intergenic | 45.0% | |
| GGTGTATGTCACATCTGGAT+AGG | - | chr5.2:12029695-12029714 | None:intergenic | 45.0% | |
| ! | ATCTGAATTTGGGCTAGACG+TGG | + | chr5.2:12028827-12028846 | MS.gene64686:CDS | 45.0% |
| ! | GGGATCATTTGCTGCTCTAA+TGG | - | chr5.2:12029188-12029207 | None:intergenic | 45.0% |
| !! | CAATATGGCTTTGACTCTGC+AGG | + | chr5.2:12028519-12028538 | MS.gene64686:intron | 45.0% |
| AGAAGTAACCGGTAAAGGCG+TGG | - | chr5.2:12028956-12028975 | None:intergenic | 50.0% | |
| ATGACAACTTTGTCCCGAGG+AGG | - | chr5.2:12029011-12029030 | None:intergenic | 50.0% | |
| CTCCTGTTGGTCCAAGAATG+AGG | - | chr5.2:12028265-12028284 | None:intergenic | 50.0% | |
| CTTTGTTGCCACGCCTTTAC+CGG | + | chr5.2:12028945-12028964 | MS.gene64686:CDS | 50.0% | |
| GACATTGTGATCTGTGCTGC+TGG | + | chr5.2:12028589-12028608 | MS.gene64686:CDS | 50.0% | |
| GCAGTGGTGTATGTCACATC+TGG | - | chr5.2:12029700-12029719 | None:intergenic | 50.0% | |
| TCGACACAACTGATCCTCCT+CGG | + | chr5.2:12028994-12029013 | MS.gene64686:CDS | 50.0% | |
| TGTCTTCCAATGGCTCCTGT+TGG | - | chr5.2:12028278-12028297 | None:intergenic | 50.0% | |
| CGACACAACTGATCCTCCTC+GGG | + | chr5.2:12028995-12029014 | MS.gene64686:CDS | 55.0% | |
| CTTGGACCAACAGGAGCCAT+TGG | + | chr5.2:12028269-12028288 | MS.gene64686:CDS | 55.0% | |
| ! | CGGTAAAGGCGTGGCAACAA+AGG | - | chr5.2:12028947-12028966 | None:intergenic | 55.0% |
| CTGGCTCAACGGCCTCATGA+CGG | - | chr5.2:12028854-12028873 | None:intergenic | 60.0% | |
| GCTAGACGTGGACCGTCATG+AGG | + | chr5.2:12028839-12028858 | MS.gene64686:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 12028242 | 12029747 | 12028242 | ID=MS.gene64686 |
| chr5.2 | mRNA | 12028242 | 12029747 | 12028242 | ID=MS.gene64686.t1;Parent=MS.gene64686 |
| chr5.2 | exon | 12028242 | 12028457 | 12028242 | ID=MS.gene64686.t1.exon1;Parent=MS.gene64686.t1 |
| chr5.2 | CDS | 12028242 | 12028457 | 12028242 | ID=cds.MS.gene64686.t1;Parent=MS.gene64686.t1 |
| chr5.2 | exon | 12028541 | 12028675 | 12028541 | ID=MS.gene64686.t1.exon2;Parent=MS.gene64686.t1 |
| chr5.2 | CDS | 12028541 | 12028675 | 12028541 | ID=cds.MS.gene64686.t1;Parent=MS.gene64686.t1 |
| chr5.2 | exon | 12028816 | 12029053 | 12028816 | ID=MS.gene64686.t1.exon3;Parent=MS.gene64686.t1 |
| chr5.2 | CDS | 12028816 | 12029053 | 12028816 | ID=cds.MS.gene64686.t1;Parent=MS.gene64686.t1 |
| chr5.2 | exon | 12029149 | 12029352 | 12029149 | ID=MS.gene64686.t1.exon4;Parent=MS.gene64686.t1 |
| chr5.2 | CDS | 12029149 | 12029352 | 12029149 | ID=cds.MS.gene64686.t1;Parent=MS.gene64686.t1 |
| chr5.2 | exon | 12029584 | 12029747 | 12029584 | ID=MS.gene64686.t1.exon5;Parent=MS.gene64686.t1 |
| chr5.2 | CDS | 12029584 | 12029747 | 12029584 | ID=cds.MS.gene64686.t1;Parent=MS.gene64686.t1 |
| Gene Sequence |
| Protein sequence |
