Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64687.t1 | CAA41106.1 | 100 | 318 | 0 | 0 | 1 | 318 | 1 | 318 | 9.70E-179 | 636 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64687.t1 | P52575 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 5.7e-180 | 631.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64687.t1 | G7KEZ1 | 98.7 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 3.8e-177 | 630.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene64687 | 0.813712 | 2.23E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene64687 | 0.803495 | 3.39E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene64687 | 0.810296 | 1.24E-50 | -1.69E-46 |
| MS.gene050380 | MS.gene64687 | 0.806379 | 8.47E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene64687 | 0.862068 | 6.58E-64 | -1.69E-46 |
| MS.gene050883 | MS.gene64687 | 0.819204 | 1.31E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene64687 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene64687 | 0.842031 | 3.31E-58 | -1.69E-46 |
| MS.gene051138 | MS.gene64687 | 0.816278 | 6.01E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene64687 | 0.860797 | 1.61E-63 | -1.69E-46 |
| MS.gene053488 | MS.gene64687 | 0.828244 | 1.00E-54 | -1.69E-46 |
| MS.gene053561 | MS.gene64687 | 0.84114 | 5.69E-58 | -1.69E-46 |
| MS.gene054146 | MS.gene64687 | 0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene054708 | MS.gene64687 | 0.827276 | 1.71E-54 | -1.69E-46 |
| MS.gene055124 | MS.gene64687 | 0.889076 | 3.35E-73 | -1.69E-46 |
| MS.gene055154 | MS.gene64687 | 0.862157 | 6.18E-64 | -1.69E-46 |
| MS.gene055202 | MS.gene64687 | 0.838172 | 3.37E-57 | -1.69E-46 |
| MS.gene055959 | MS.gene64687 | 0.857825 | 1.25E-62 | -1.69E-46 |
| MS.gene056311 | MS.gene64687 | 0.80708 | 6.02E-50 | -1.69E-46 |
| MS.gene056313 | MS.gene64687 | 0.831425 | 1.68E-55 | -1.69E-46 |
| MS.gene056856 | MS.gene64687 | 0.805351 | 1.39E-49 | -1.69E-46 |
| MS.gene057550 | MS.gene64687 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene64687 | 0.821885 | 3.18E-53 | -1.69E-46 |
| MS.gene058093 | MS.gene64687 | 0.848868 | 4.66E-60 | -1.69E-46 |
| MS.gene058099 | MS.gene64687 | 0.86455 | 1.12E-64 | -1.69E-46 |
| MS.gene058108 | MS.gene64687 | 0.851057 | 1.14E-60 | -1.69E-46 |
| MS.gene058109 | MS.gene64687 | 0.851878 | 6.66E-61 | -1.69E-46 |
| MS.gene058111 | MS.gene64687 | 0.806705 | 7.22E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene64687 | 0.872769 | 2.46E-67 | -1.69E-46 |
| MS.gene058173 | MS.gene64687 | 0.869595 | 2.75E-66 | -1.69E-46 |
| MS.gene058175 | MS.gene64687 | 0.870218 | 1.72E-66 | -1.69E-46 |
| MS.gene058176 | MS.gene64687 | 0.821198 | 4.59E-53 | -1.69E-46 |
| MS.gene058179 | MS.gene64687 | 0.854559 | 1.14E-61 | -1.69E-46 |
| MS.gene058180 | MS.gene64687 | 0.818552 | 1.85E-52 | -1.69E-46 |
| MS.gene058493 | MS.gene64687 | 0.813488 | 2.50E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene64687 | 0.835306 | 1.81E-56 | -1.69E-46 |
| MS.gene059037 | MS.gene64687 | 0.879368 | 1.32E-69 | -1.69E-46 |
| MS.gene059038 | MS.gene64687 | 0.865817 | 4.48E-65 | -1.69E-46 |
| MS.gene059044 | MS.gene64687 | 0.853497 | 2.30E-61 | -1.69E-46 |
| MS.gene059045 | MS.gene64687 | 0.837847 | 4.08E-57 | -1.69E-46 |
| MS.gene059697 | MS.gene64687 | 0.801696 | 7.97E-49 | -1.69E-46 |
| MS.gene059916 | MS.gene64687 | 0.800085 | 1.70E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64687.t1 | MTR_5g020800 | 98.742 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 0.0 | 645 |
| MS.gene64687.t1 | MTR_5g020760 | 98.428 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 0.0 | 645 |
| MS.gene64687.t1 | MTR_5g020760 | 98.485 | 264 | 4 | 0 | 1 | 264 | 1 | 264 | 0.0 | 533 |
| MS.gene64687.t1 | MTR_5g020740 | 59.688 | 320 | 116 | 4 | 1 | 318 | 1 | 309 | 9.88e-135 | 385 |
| MS.gene64687.t1 | MTR_3g111980 | 57.944 | 321 | 121 | 4 | 1 | 318 | 1 | 310 | 5.27e-124 | 358 |
| MS.gene64687.t1 | MTR_3g111990 | 55.799 | 319 | 129 | 3 | 1 | 318 | 1 | 308 | 2.60e-121 | 351 |
| MS.gene64687.t1 | MTR_3g116840 | 54.921 | 315 | 130 | 3 | 5 | 318 | 9 | 312 | 8.71e-118 | 342 |
| MS.gene64687.t1 | MTR_4g070370 | 49.196 | 311 | 146 | 3 | 7 | 316 | 10 | 309 | 3.08e-103 | 305 |
| MS.gene64687.t1 | MTR_4g070340 | 49.038 | 312 | 147 | 3 | 6 | 316 | 8 | 308 | 4.63e-98 | 292 |
| MS.gene64687.t1 | MTR_4g070340 | 48.077 | 312 | 145 | 4 | 6 | 316 | 8 | 303 | 9.36e-93 | 279 |
| MS.gene64687.t1 | MTR_4g070340 | 50.201 | 249 | 123 | 1 | 69 | 316 | 11 | 259 | 1.31e-81 | 249 |
| MS.gene64687.t1 | MTR_4g070360 | 39.937 | 318 | 177 | 3 | 4 | 318 | 3 | 309 | 2.67e-81 | 249 |
| MS.gene64687.t1 | MTR_5g027290 | 41.433 | 321 | 168 | 5 | 4 | 317 | 3 | 310 | 9.85e-80 | 245 |
| MS.gene64687.t1 | MTR_5g027240 | 42.056 | 321 | 166 | 5 | 4 | 317 | 3 | 310 | 8.34e-79 | 243 |
| MS.gene64687.t1 | MTR_8g071130 | 40.123 | 324 | 171 | 8 | 4 | 318 | 3 | 312 | 2.18e-73 | 229 |
| MS.gene64687.t1 | MTR_3g008140 | 39.117 | 317 | 178 | 5 | 2 | 318 | 3 | 304 | 2.44e-72 | 226 |
| MS.gene64687.t1 | MTR_3g007970 | 38.679 | 318 | 179 | 6 | 2 | 318 | 3 | 305 | 2.80e-71 | 223 |
| MS.gene64687.t1 | MTR_3g008100 | 38.318 | 321 | 176 | 6 | 2 | 318 | 3 | 305 | 1.94e-69 | 219 |
| MS.gene64687.t1 | MTR_3g008100 | 37.695 | 321 | 171 | 6 | 2 | 318 | 3 | 298 | 1.93e-65 | 208 |
| MS.gene64687.t1 | MTR_1g093720 | 35.110 | 319 | 192 | 4 | 3 | 318 | 12 | 318 | 5.91e-65 | 208 |
| MS.gene64687.t1 | MTR_3g008100 | 37.688 | 199 | 104 | 4 | 2 | 197 | 3 | 184 | 2.58e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64687.t1 | AT1G75280 | 53.438 | 320 | 135 | 4 | 1 | 317 | 1 | 309 | 2.11e-115 | 336 |
| MS.gene64687.t1 | AT4G39230 | 53.292 | 319 | 137 | 3 | 1 | 318 | 1 | 308 | 2.20e-115 | 336 |
| MS.gene64687.t1 | AT1G75290 | 52.960 | 321 | 136 | 5 | 1 | 317 | 1 | 310 | 2.65e-115 | 336 |
| MS.gene64687.t1 | AT1G75290 | 52.960 | 321 | 136 | 5 | 1 | 317 | 28 | 337 | 1.08e-114 | 335 |
| MS.gene64687.t1 | AT1G75300 | 49.552 | 335 | 137 | 6 | 1 | 317 | 1 | 321 | 5.70e-104 | 307 |
| MS.gene64687.t1 | AT1G19540 | 48.903 | 319 | 147 | 5 | 5 | 318 | 3 | 310 | 8.61e-99 | 293 |
| MS.gene64687.t1 | AT4G34540 | 37.342 | 316 | 181 | 2 | 4 | 318 | 7 | 306 | 4.90e-79 | 243 |
| MS.gene64687.t1 | AT1G19540 | 49.621 | 264 | 118 | 4 | 5 | 264 | 3 | 255 | 5.41e-79 | 241 |
| MS.gene64687.t1 | AT1G32100 | 39.441 | 322 | 175 | 5 | 4 | 318 | 9 | 317 | 4.68e-76 | 236 |
| MS.gene64687.t1 | AT4G13660 | 40.373 | 322 | 172 | 5 | 4 | 318 | 9 | 317 | 3.58e-75 | 234 |
| MS.gene64687.t1 | AT4G13660 | 40.373 | 322 | 172 | 5 | 4 | 318 | 9 | 317 | 3.58e-75 | 234 |
Find 65 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGACAAAGTTGTCATTCT+TGG | 0.153289 | 5.2:+12040194 | MS.gene64687:CDS |
| ATAAGCTCTTCCTTGGTTTC+AGG | 0.170156 | 5.2:-12039578 | None:intergenic |
| AAAGAGCAATGACCTCATTT+TGG | 0.212124 | 5.2:-12040437 | None:intergenic |
| ATTGATAATTACCAATCTTT+AGG | 0.253564 | 5.2:+12039599 | MS.gene64687:CDS |
| TTCAGAAGCTTCAATATCTT+TGG | 0.254251 | 5.2:-12040850 | None:intergenic |
| CTTTGTTGCCACGCCTTTAC+CGG | 0.290435 | 5.2:+12040125 | MS.gene64687:CDS |
| TACCATTCACAACAAATAAA+AGG | 0.300864 | 5.2:+12040801 | MS.gene64687:CDS |
| AAATGAGGTCATTGCTCTTT+GGG | 0.309923 | 5.2:+12040440 | MS.gene64687:CDS |
| AAAATGAGGTCATTGCTCTT+TGG | 0.317132 | 5.2:+12040439 | MS.gene64687:CDS |
| CTATTGGAAGACACATAGTT+TGG | 0.363124 | 5.2:+12039465 | MS.gene64687:CDS |
| GGGATCATTTGCTGCTCTAA+TGG | 0.371239 | 5.2:-12040364 | None:intergenic |
| ATTCCCTCATAACTATTTGT+TGG | 0.383223 | 5.2:+12040773 | MS.gene64687:CDS |
| TTAGCAGCTGTAATAAGCTT+TGG | 0.390009 | 5.2:-12039554 | None:intergenic |
| CTAGGACCAACAGGAGCTAT+TGG | 0.396755 | 5.2:+12039449 | MS.gene64687:CDS |
| CGGTTACTTCTTACGTAACT+TGG | 0.420584 | 5.2:+12040145 | MS.gene64687:CDS |
| AGGAAATCCAACATATGCTT+TGG | 0.425743 | 5.2:+12039502 | MS.gene64687:CDS |
| ATCCTCATCCTAGGACCAAC+AGG | 0.432495 | 5.2:+12039440 | MS.gene64687:CDS |
| ATTAAAGCAATTAAAGAAGC+TGG | 0.439051 | 5.2:+12039823 | MS.gene64687:CDS |
| TTTGGCTTGTTAACATTGCC+AGG | 0.439374 | 5.2:-12039536 | None:intergenic |
| AATGCCAACAAATAGTTATG+AGG | 0.443320 | 5.2:-12040777 | None:intergenic |
| GTAGAATAACTCCTAAAGAT+TGG | 0.448622 | 5.2:-12039610 | None:intergenic |
| ATTATCAATAAGCTCTTCCT+TGG | 0.453266 | 5.2:-12039585 | None:intergenic |
| CAATAGCTCCTGTTGGTCCT+AGG | 0.454369 | 5.2:-12039448 | None:intergenic |
| TGATCATGAAACTCTTGTTA+AGG | 0.455304 | 5.2:+12039732 | MS.gene64687:CDS |
| TTTCTAACCAAAGCATATGT+TGG | 0.458494 | 5.2:-12039509 | None:intergenic |
| GCAGTGGTGTATGTCACATC+TGG | 0.461849 | 5.2:-12040879 | None:intergenic |
| GAAGCTTCAATATCTTTGGC+TGG | 0.462307 | 5.2:-12040846 | None:intergenic |
| TAAAGAAGCTGGAAACGTTA+AGG | 0.465104 | 5.2:+12039834 | MS.gene64687:CDS |
| ACAGCTTTGTTCAATGTGTT+GGG | 0.466334 | 5.2:-12040384 | None:intergenic |
| CAAGTTACGTAAGAAGTAAC+CGG | 0.467564 | 5.2:-12040144 | None:intergenic |
| CTTCAGCCTCAATTACTCTT+CGG | 0.475704 | 5.2:-12040085 | None:intergenic |
| AAAGTTGTCATTCTTGGAGA+TGG | 0.476919 | 5.2:+12040200 | MS.gene64687:CDS |
| GACAGCTTTGTTCAATGTGT+TGG | 0.480648 | 5.2:-12040385 | None:intergenic |
| TATTGGAAGACACATAGTTT+GGG | 0.481038 | 5.2:+12039466 | MS.gene64687:CDS |
| TAGACTACTAATTGAGGATC+AGG | 0.481816 | 5.2:+12039792 | MS.gene64687:CDS |
| GAAAACAAAATCCTCATCCT+AGG | 0.488477 | 5.2:+12039431 | MS.gene64687:CDS |
| ACGTAAGAAGTAACCGGTAA+AGG | 0.493799 | 5.2:-12040138 | None:intergenic |
| GACATTGTGATCTGTGCTGC+TGG | 0.497025 | 5.2:+12039769 | MS.gene64687:CDS |
| AAATTATTTGACCCAAAATG+AGG | 0.510766 | 5.2:+12040425 | MS.gene64687:CDS |
| CGGTAAAGGCGTGGCAACAA+AGG | 0.521509 | 5.2:-12040124 | None:intergenic |
| TGAGAAAACTTATGTTTCAG+AGG | 0.523834 | 5.2:+12040485 | MS.gene64687:CDS |
| CAAGTTCTCAAAGATATTCA+AGG | 0.524774 | 5.2:+12040510 | MS.gene64687:CDS |
| CTCCTGTTGGTCCTAGGATG+AGG | 0.526748 | 5.2:-12039442 | None:intergenic |
| AGCTGCTAATCCTGAAACCA+AGG | 0.544614 | 5.2:+12039568 | MS.gene64687:CDS |
| GTTTGGGCAAGTATTAAAGC+AGG | 0.544920 | 5.2:+12039482 | MS.gene64687:CDS |
| CTTGGAGATGGAAATGTGAA+AGG | 0.559099 | 5.2:+12040212 | MS.gene64687:CDS |
| TTATGTAACTGAGGCTGATG+TGG | 0.559412 | 5.2:+12040332 | MS.gene64687:CDS |
| ACGTCTAGCCCAAATTCAGA+TGG | 0.563905 | 5.2:-12040005 | None:intergenic |
| TGGCAACAAAGGTAAGTGTA+AGG | 0.564377 | 5.2:-12040113 | None:intergenic |
| TGTCTTCCAATAGCTCCTGT+TGG | 0.572016 | 5.2:-12039455 | None:intergenic |
| GGTGTATGTCACATCTGGAT+AGG | 0.574765 | 5.2:-12040874 | None:intergenic |
| TTCAGGAGCTTATGTAACTG+AGG | 0.576478 | 5.2:+12040323 | MS.gene64687:intron |
| ATGCCAACAAATAGTTATGA+GGG | 0.580723 | 5.2:-12040776 | None:intergenic |
| ATCTGAATTTGGGCTAGACG+TGG | 0.583561 | 5.2:+12040007 | MS.gene64687:CDS |
| TGCTGGTAGACTACTAATTG+AGG | 0.589907 | 5.2:+12039786 | MS.gene64687:CDS |
| CGAAGAGTAATTGAGGCTGA+AGG | 0.609640 | 5.2:+12040086 | MS.gene64687:CDS |
| AAGTATCCGAAGAGTAATTG+AGG | 0.611899 | 5.2:+12040079 | MS.gene64687:CDS |
| ATTCAAATATTCATCAGCAG+TGG | 0.611923 | 5.2:-12040895 | None:intergenic |
| CGTCTAGCCCAAATTCAGAT+GGG | 0.623219 | 5.2:-12040004 | None:intergenic |
| AGAAGTAACCGGTAAAGGCG+TGG | 0.632726 | 5.2:-12040133 | None:intergenic |
| TTTGTCGCGAGGAGGATCAG+TGG | 0.636069 | 5.2:-12040180 | None:intergenic |
| TATGTAACTGAGGCTGATGT+GGG | 0.645622 | 5.2:+12040333 | MS.gene64687:CDS |
| CTGGCTCAACTGCATCGTGA+CGG | 0.650507 | 5.2:-12040031 | None:intergenic |
| ATGACAACTTTGTCGCGAGG+AGG | 0.674560 | 5.2:-12040188 | None:intergenic |
| AGAATGACAACTTTGTCGCG+AGG | 0.697692 | 5.2:-12040191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTGAACTTATTTAC+TGG | - | chr5.2:12039884-12039903 | None:intergenic | 20.0% |
| !!! | ATTGATAATTACCAATCTTT+AGG | + | chr5.2:12039599-12039618 | MS.gene64687:CDS | 20.0% |
| !!! | ATTGTTAAGAATTTTTACAC+CGG | + | chr5.2:12040558-12040577 | MS.gene64687:intron | 20.0% |
| !!! | ATTTGCCTTAATTTTTTTTC+AGG | + | chr5.2:12040306-12040325 | MS.gene64687:intron | 20.0% |
| !!! | ATTTTGGGTCAAATAATTTT+TGG | - | chr5.2:12040424-12040443 | None:intergenic | 20.0% |
| !!! | TTTTGGGTCAAATAATTTTT+GGG | - | chr5.2:12040423-12040442 | None:intergenic | 20.0% |
| ! | AAATTATTTGACCCAAAATG+AGG | + | chr5.2:12040425-12040444 | MS.gene64687:CDS | 25.0% |
| ! | AAGCCGTATAAATTATTTGA+CGG | + | chr5.2:12040640-12040659 | MS.gene64687:intron | 25.0% |
| ! | AAGCTCCTGAAAAAAAATTA+AGG | - | chr5.2:12040314-12040333 | None:intergenic | 25.0% |
| ! | ACACCGTCAAATAATTTATA+CGG | - | chr5.2:12040646-12040665 | None:intergenic | 25.0% |
| ! | ATTAAAGCAATTAAAGAAGC+TGG | + | chr5.2:12039823-12039842 | MS.gene64687:CDS | 25.0% |
| ! | TACCATTCACAACAAATAAA+AGG | + | chr5.2:12040801-12040820 | MS.gene64687:CDS | 25.0% |
| !! | AAATTTTTCCCATCTGAATT+TGG | + | chr5.2:12039996-12040015 | MS.gene64687:CDS | 25.0% |
| !! | AATTTTTCCCATCTGAATTT+GGG | + | chr5.2:12039997-12040016 | MS.gene64687:CDS | 25.0% |
| !! | TTTGGGTCAAATAATTTTTG+GGG | - | chr5.2:12040422-12040441 | None:intergenic | 25.0% |
| AATGCCAACAAATAGTTATG+AGG | - | chr5.2:12040780-12040799 | None:intergenic | 30.0% | |
| ATGCCAACAAATAGTTATGA+GGG | - | chr5.2:12040779-12040798 | None:intergenic | 30.0% | |
| ATTATCAATAAGCTCTTCCT+TGG | - | chr5.2:12039588-12039607 | None:intergenic | 30.0% | |
| ATTCAAATATTCATCAGCAG+TGG | - | chr5.2:12040898-12040917 | None:intergenic | 30.0% | |
| ATTCCCTCATAACTATTTGT+TGG | + | chr5.2:12040773-12040792 | MS.gene64687:CDS | 30.0% | |
| CAAGTTCTCAAAGATATTCA+AGG | + | chr5.2:12040510-12040529 | MS.gene64687:CDS | 30.0% | |
| CTTAGTAATAACTCCTTTGA+TGG | + | chr5.2:12039919-12039938 | MS.gene64687:intron | 30.0% | |
| GTAGAATAACTCCTAAAGAT+TGG | - | chr5.2:12039613-12039632 | None:intergenic | 30.0% | |
| GTTATTACTAAGAGTCTATC+TGG | - | chr5.2:12039911-12039930 | None:intergenic | 30.0% | |
| TACCAACTATGATTGATTAC+CGG | - | chr5.2:12040580-12040599 | None:intergenic | 30.0% | |
| TATTGGAAGACACATAGTTT+GGG | + | chr5.2:12039466-12039485 | MS.gene64687:CDS | 30.0% | |
| TCTTCAAAAACTTGTCTAAC+TGG | - | chr5.2:12040053-12040072 | None:intergenic | 30.0% | |
| TGAGAAAACTTATGTTTCAG+AGG | + | chr5.2:12040485-12040504 | MS.gene64687:CDS | 30.0% | |
| TGATCATGAAACTCTTGTTA+AGG | + | chr5.2:12039732-12039751 | MS.gene64687:CDS | 30.0% | |
| TTCAGAAGCTTCAATATCTT+TGG | - | chr5.2:12040853-12040872 | None:intergenic | 30.0% | |
| TTTCTAACCAAAGCATATGT+TGG | - | chr5.2:12039512-12039531 | None:intergenic | 30.0% | |
| ! | GAGTCAAAGACATATTGATT+AGG | - | chr5.2:12039696-12039715 | None:intergenic | 30.0% |
| !! | AATTTTTGGGGAGTCTAATA+TGG | - | chr5.2:12040410-12040429 | None:intergenic | 30.0% |
| !!! | CTCCTTTTATTTGTTGTGAA+TGG | - | chr5.2:12040806-12040825 | None:intergenic | 30.0% |
| AAAATGAGGTCATTGCTCTT+TGG | + | chr5.2:12040439-12040458 | MS.gene64687:CDS | 35.0% | |
| AAAGTTGTCATTCTTGGAGA+TGG | + | chr5.2:12040200-12040219 | MS.gene64687:CDS | 35.0% | |
| AAATGAGGTCATTGCTCTTT+GGG | + | chr5.2:12040440-12040459 | MS.gene64687:CDS | 35.0% | |
| AAGTATCCGAAGAGTAATTG+AGG | + | chr5.2:12040079-12040098 | MS.gene64687:CDS | 35.0% | |
| AATATGTCTTTGACTCTGCA+GGG | + | chr5.2:12039700-12039719 | MS.gene64687:intron | 35.0% | |
| AGCACAAATCTAACCATCAA+AGG | - | chr5.2:12039935-12039954 | None:intergenic | 35.0% | |
| AGGAAATCCAACATATGCTT+TGG | + | chr5.2:12039502-12039521 | MS.gene64687:CDS | 35.0% | |
| CAAGTTACGTAAGAAGTAAC+CGG | - | chr5.2:12040147-12040166 | None:intergenic | 35.0% | |
| CTAGTACTAAAACTGTTGTG+TGG | - | chr5.2:12040250-12040269 | None:intergenic | 35.0% | |
| CTATTGGAAGACACATAGTT+TGG | + | chr5.2:12039465-12039484 | MS.gene64687:CDS | 35.0% | |
| GAAAACAAAATCCTCATCCT+AGG | + | chr5.2:12039431-12039450 | MS.gene64687:CDS | 35.0% | |
| TAAAGAAGCTGGAAACGTTA+AGG | + | chr5.2:12039834-12039853 | MS.gene64687:CDS | 35.0% | |
| TAGACTACTAATTGAGGATC+AGG | + | chr5.2:12039792-12039811 | MS.gene64687:CDS | 35.0% | |
| TTAGCAGCTGTAATAAGCTT+TGG | - | chr5.2:12039557-12039576 | None:intergenic | 35.0% | |
| ! | AAAGAGCAATGACCTCATTT+TGG | - | chr5.2:12040440-12040459 | None:intergenic | 35.0% |
| ! | AAGAGCAATGACCTCATTTT+GGG | - | chr5.2:12040439-12040458 | None:intergenic | 35.0% |
| ! | CTCTTTGGGAGAAAAAGATT+GGG | + | chr5.2:12040454-12040473 | MS.gene64687:CDS | 35.0% |
| !! | ACAGCTTTGTTCAATGTGTT+GGG | - | chr5.2:12040387-12040406 | None:intergenic | 35.0% |
| ACGTAAGAAGTAACCGGTAA+AGG | - | chr5.2:12040141-12040160 | None:intergenic | 40.0% | |
| ATAAGCTCTTCCTTGGTTTC+AGG | - | chr5.2:12039581-12039600 | None:intergenic | 40.0% | |
| CAATATGTCTTTGACTCTGC+AGG | + | chr5.2:12039699-12039718 | MS.gene64687:intron | 40.0% | |
| CACCGGTAATCAATCATAGT+TGG | + | chr5.2:12040575-12040594 | MS.gene64687:intron | 40.0% | |
| CGGTTACTTCTTACGTAACT+TGG | + | chr5.2:12040145-12040164 | MS.gene64687:CDS | 40.0% | |
| CTTCAGCCTCAATTACTCTT+CGG | - | chr5.2:12040088-12040107 | None:intergenic | 40.0% | |
| CTTGGAGATGGAAATGTGAA+AGG | + | chr5.2:12040212-12040231 | MS.gene64687:CDS | 40.0% | |
| GAAGCTTCAATATCTTTGGC+TGG | - | chr5.2:12040849-12040868 | None:intergenic | 40.0% | |
| GCTTTGGTTAGAAAAACACC+TGG | + | chr5.2:12039518-12039537 | MS.gene64687:CDS | 40.0% | |
| GTTTGGGCAAGTATTAAAGC+AGG | + | chr5.2:12039482-12039501 | MS.gene64687:CDS | 40.0% | |
| TATGTAACTGAGGCTGATGT+GGG | + | chr5.2:12040333-12040352 | MS.gene64687:CDS | 40.0% | |
| TGCTGGTAGACTACTAATTG+AGG | + | chr5.2:12039786-12039805 | MS.gene64687:CDS | 40.0% | |
| TGGCAACAAAGGTAAGTGTA+AGG | - | chr5.2:12040116-12040135 | None:intergenic | 40.0% | |
| TTATGTAACTGAGGCTGATG+TGG | + | chr5.2:12040332-12040351 | MS.gene64687:CDS | 40.0% | |
| TTCAGGAGCTTATGTAACTG+AGG | + | chr5.2:12040323-12040342 | MS.gene64687:intron | 40.0% | |
| ! | GCTCTTTGGGAGAAAAAGAT+TGG | + | chr5.2:12040453-12040472 | MS.gene64687:CDS | 40.0% |
| !! | GACAGCTTTGTTCAATGTGT+TGG | - | chr5.2:12040388-12040407 | None:intergenic | 40.0% |
| !! | TTTGGCTTGTTAACATTGCC+AGG | - | chr5.2:12039539-12039558 | None:intergenic | 40.0% |
| ACGTCTAGCCCAAATTCAGA+TGG | - | chr5.2:12040008-12040027 | None:intergenic | 45.0% | |
| AGAATGACAACTTTGTCGCG+AGG | - | chr5.2:12040194-12040213 | None:intergenic | 45.0% | |
| AGCTGCTAATCCTGAAACCA+AGG | + | chr5.2:12039568-12039587 | MS.gene64687:CDS | 45.0% | |
| CGAAGAGTAATTGAGGCTGA+AGG | + | chr5.2:12040086-12040105 | MS.gene64687:CDS | 45.0% | |
| CGCGACAAAGTTGTCATTCT+TGG | + | chr5.2:12040194-12040213 | MS.gene64687:CDS | 45.0% | |
| CGTCTAGCCCAAATTCAGAT+GGG | - | chr5.2:12040007-12040026 | None:intergenic | 45.0% | |
| GGTGTATGTCACATCTGGAT+AGG | - | chr5.2:12040877-12040896 | None:intergenic | 45.0% | |
| TGTCTTCCAATAGCTCCTGT+TGG | - | chr5.2:12039458-12039477 | None:intergenic | 45.0% | |
| ! | ATCTGAATTTGGGCTAGACG+TGG | + | chr5.2:12040007-12040026 | MS.gene64687:CDS | 45.0% |
| ! | GGGATCATTTGCTGCTCTAA+TGG | - | chr5.2:12040367-12040386 | None:intergenic | 45.0% |
| AGAAGTAACCGGTAAAGGCG+TGG | - | chr5.2:12040136-12040155 | None:intergenic | 50.0% | |
| ATCCTCATCCTAGGACCAAC+AGG | + | chr5.2:12039440-12039459 | MS.gene64687:CDS | 50.0% | |
| ATGACAACTTTGTCGCGAGG+AGG | - | chr5.2:12040191-12040210 | None:intergenic | 50.0% | |
| CAATAGCTCCTGTTGGTCCT+AGG | - | chr5.2:12039451-12039470 | None:intergenic | 50.0% | |
| CTAGGACCAACAGGAGCTAT+TGG | + | chr5.2:12039449-12039468 | MS.gene64687:CDS | 50.0% | |
| CTTTGTTGCCACGCCTTTAC+CGG | + | chr5.2:12040125-12040144 | MS.gene64687:CDS | 50.0% | |
| GACATTGTGATCTGTGCTGC+TGG | + | chr5.2:12039769-12039788 | MS.gene64687:CDS | 50.0% | |
| GCAGTGGTGTATGTCACATC+TGG | - | chr5.2:12040882-12040901 | None:intergenic | 50.0% | |
| CTCCTGTTGGTCCTAGGATG+AGG | - | chr5.2:12039445-12039464 | None:intergenic | 55.0% | |
| CTGGCTCAACTGCATCGTGA+CGG | - | chr5.2:12040034-12040053 | None:intergenic | 55.0% | |
| TTTGTCGCGAGGAGGATCAG+TGG | - | chr5.2:12040183-12040202 | None:intergenic | 55.0% | |
| ! | CGGTAAAGGCGTGGCAACAA+AGG | - | chr5.2:12040127-12040146 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 12039422 | 12040929 | 12039422 | ID=MS.gene64687 |
| chr5.2 | mRNA | 12039422 | 12040929 | 12039422 | ID=MS.gene64687.t1;Parent=MS.gene64687 |
| chr5.2 | exon | 12039422 | 12039637 | 12039422 | ID=MS.gene64687.t1.exon1;Parent=MS.gene64687.t1 |
| chr5.2 | CDS | 12039422 | 12039637 | 12039422 | ID=cds.MS.gene64687.t1;Parent=MS.gene64687.t1 |
| chr5.2 | exon | 12039721 | 12039855 | 12039721 | ID=MS.gene64687.t1.exon2;Parent=MS.gene64687.t1 |
| chr5.2 | CDS | 12039721 | 12039855 | 12039721 | ID=cds.MS.gene64687.t1;Parent=MS.gene64687.t1 |
| chr5.2 | exon | 12039996 | 12040233 | 12039996 | ID=MS.gene64687.t1.exon3;Parent=MS.gene64687.t1 |
| chr5.2 | CDS | 12039996 | 12040233 | 12039996 | ID=cds.MS.gene64687.t1;Parent=MS.gene64687.t1 |
| chr5.2 | exon | 12040328 | 12040531 | 12040328 | ID=MS.gene64687.t1.exon4;Parent=MS.gene64687.t1 |
| chr5.2 | CDS | 12040328 | 12040531 | 12040328 | ID=cds.MS.gene64687.t1;Parent=MS.gene64687.t1 |
| chr5.2 | exon | 12040766 | 12040929 | 12040766 | ID=MS.gene64687.t1.exon5;Parent=MS.gene64687.t1 |
| chr5.2 | CDS | 12040766 | 12040929 | 12040766 | ID=cds.MS.gene64687.t1;Parent=MS.gene64687.t1 |
| Gene Sequence |
| Protein sequence |
