Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64934.t1 | RHN40757.1 | 85.4 | 302 | 36 | 4 | 1 | 299 | 14 | 310 | 6.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64934.t1 | Q9LDD1 | 36.6 | 292 | 128 | 7 | 37 | 298 | 69 | 333 | 2.5e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64934.t1 | A0A396GPW6 | 85.4 | 302 | 36 | 4 | 1 | 299 | 14 | 310 | 4.5e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene64934 | 0.833078 | 6.56E-56 | -1.69E-46 |
| MS.gene049254 | MS.gene64934 | 0.836477 | 9.15E-57 | -1.69E-46 |
| MS.gene049350 | MS.gene64934 | 0.853008 | 3.17E-61 | -1.69E-46 |
| MS.gene049499 | MS.gene64934 | 0.814147 | 1.79E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene64934 | 0.842079 | 3.22E-58 | -1.69E-46 |
| MS.gene049807 | MS.gene64934 | 0.830963 | 2.18E-55 | -1.69E-46 |
| MS.gene049824 | MS.gene64934 | 0.800415 | 1.46E-48 | -1.69E-46 |
| MS.gene050414 | MS.gene64934 | 0.818165 | 2.26E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene64934 | 0.809456 | 1.88E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene64934 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene64934 | 0.809375 | 1.95E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene64934 | 0.831748 | 1.40E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene64934 | 0.825989 | 3.47E-54 | -1.69E-46 |
| MS.gene051490 | MS.gene64934 | 0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene64934 | 0.806312 | 8.75E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene64934 | 0.809673 | 1.68E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene64934 | 0.837578 | 4.79E-57 | -1.69E-46 |
| MS.gene052037 | MS.gene64934 | 0.810717 | 1.00E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene64934 | 0.828619 | 8.13E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene64934 | 0.846931 | 1.59E-59 | -1.69E-46 |
| MS.gene052516 | MS.gene64934 | 0.82703 | 1.96E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene64934 | 0.821942 | 3.09E-53 | -1.69E-46 |
| MS.gene052534 | MS.gene64934 | 0.813215 | 2.87E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene64934 | 0.809308 | 2.02E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene64934 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene64934 | 0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene64934 | 0.818554 | 1.84E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene64934 | 0.801243 | 9.87E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene64934 | 0.808413 | 3.14E-50 | -1.69E-46 |
| MS.gene054222 | MS.gene64934 | 0.805347 | 1.39E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene64934 | 0.816617 | 5.04E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene64934 | 0.814646 | 1.39E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene64934 | 0.809044 | 2.30E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene64934 | 0.833901 | 4.09E-56 | -1.69E-46 |
| MS.gene054991 | MS.gene64934 | 0.825608 | 4.27E-54 | -1.69E-46 |
| MS.gene055083 | MS.gene64934 | 0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene055386 | MS.gene64934 | 0.809597 | 1.75E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene64934 | 0.804085 | 2.56E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene64934 | 0.842286 | 2.84E-58 | -1.69E-46 |
| MS.gene055724 | MS.gene64934 | 0.803119 | 4.06E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene64934 | 0.837454 | 5.15E-57 | -1.69E-46 |
| MS.gene056308 | MS.gene64934 | 0.823992 | 1.03E-53 | -1.69E-46 |
| MS.gene056677 | MS.gene64934 | 0.805586 | 1.24E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene64934 | 0.842026 | 3.32E-58 | -1.69E-46 |
| MS.gene057102 | MS.gene64934 | 0.859449 | 4.10E-63 | -1.69E-46 |
| MS.gene057208 | MS.gene64934 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene64934 | 0.838578 | 2.65E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene64934 | 0.820123 | 8.10E-53 | -1.69E-46 |
| MS.gene058668 | MS.gene64934 | 0.832249 | 1.05E-55 | -1.69E-46 |
| MS.gene059170 | MS.gene64934 | 0.815486 | 9.02E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene64934 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene059625 | MS.gene64934 | 0.814092 | 1.84E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene64934 | -0.807392 | 5.17E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene64934 | 0.824967 | 6.06E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene64934 | 0.832206 | 1.08E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene64934 | 0.810699 | 1.01E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene64934 | 0.804161 | 2.47E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene64934 | 0.819112 | 1.38E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene64934 | 0.828659 | 7.95E-55 | -1.69E-46 |
| MS.gene061188 | MS.gene64934 | 0.829628 | 4.63E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64934.t1 | MTR_2g069350 | 42.407 | 349 | 135 | 10 | 1 | 298 | 32 | 365 | 2.62e-75 | 235 |
| MS.gene64934.t1 | MTR_4g083540 | 36.000 | 300 | 135 | 8 | 9 | 298 | 40 | 292 | 7.67e-55 | 180 |
| MS.gene64934.t1 | MTR_2g028830 | 35.354 | 297 | 150 | 5 | 5 | 298 | 61 | 318 | 2.15e-54 | 179 |
| MS.gene64934.t1 | MTR_5g013690 | 32.000 | 225 | 128 | 3 | 74 | 298 | 135 | 334 | 2.13e-31 | 120 |
| MS.gene64934.t1 | MTR_5g013690 | 32.000 | 225 | 128 | 3 | 74 | 298 | 72 | 271 | 2.93e-31 | 118 |
| MS.gene64934.t1 | MTR_1g019250 | 28.251 | 223 | 134 | 5 | 74 | 296 | 142 | 338 | 1.62e-23 | 98.6 |
| MS.gene64934.t1 | MTR_4g099060 | 30.667 | 225 | 128 | 3 | 74 | 298 | 89 | 285 | 2.70e-23 | 97.1 |
| MS.gene64934.t1 | MTR_4g099060 | 30.667 | 225 | 128 | 3 | 74 | 298 | 134 | 330 | 2.75e-23 | 97.8 |
| MS.gene64934.t1 | MTR_4g036485 | 26.457 | 223 | 118 | 5 | 66 | 286 | 21 | 199 | 1.41e-20 | 88.2 |
| MS.gene64934.t1 | MTR_3g117970 | 27.706 | 231 | 112 | 6 | 69 | 294 | 11 | 191 | 1.72e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64934.t1 | AT3G12920 | 40.550 | 291 | 128 | 9 | 32 | 298 | 64 | 333 | 1.82e-61 | 198 |
| MS.gene64934.t1 | AT1G79110 | 43.668 | 229 | 116 | 4 | 72 | 298 | 114 | 331 | 2.12e-56 | 185 |
| MS.gene64934.t1 | AT1G79110 | 43.668 | 229 | 116 | 4 | 72 | 298 | 136 | 353 | 2.54e-56 | 186 |
| MS.gene64934.t1 | AT5G45100 | 38.403 | 263 | 120 | 7 | 38 | 298 | 43 | 265 | 1.70e-55 | 181 |
| MS.gene64934.t1 | AT5G45100 | 38.403 | 263 | 120 | 7 | 38 | 298 | 70 | 292 | 5.09e-55 | 180 |
| MS.gene64934.t1 | AT1G79110 | 43.103 | 232 | 116 | 5 | 72 | 298 | 136 | 356 | 3.67e-54 | 180 |
| MS.gene64934.t1 | AT4G19700 | 37.860 | 243 | 117 | 5 | 59 | 298 | 91 | 302 | 1.73e-48 | 164 |
| MS.gene64934.t1 | AT4G35070 | 31.963 | 219 | 118 | 6 | 79 | 296 | 19 | 207 | 8.32e-26 | 102 |
| MS.gene64934.t1 | AT4G35070 | 32.258 | 217 | 116 | 6 | 79 | 294 | 74 | 260 | 1.51e-25 | 102 |
| MS.gene64934.t1 | AT1G45976 | 28.251 | 223 | 127 | 5 | 74 | 296 | 134 | 323 | 3.73e-23 | 97.4 |
| MS.gene64934.t1 | AT1G32740 | 28.700 | 223 | 129 | 6 | 75 | 294 | 68 | 263 | 6.40e-23 | 95.9 |
| MS.gene64934.t1 | AT1G32740 | 28.700 | 223 | 129 | 6 | 75 | 294 | 68 | 263 | 6.40e-23 | 95.9 |
| MS.gene64934.t1 | AT1G32740 | 28.700 | 223 | 129 | 6 | 75 | 294 | 101 | 296 | 7.99e-23 | 96.3 |
| MS.gene64934.t1 | AT1G32740 | 28.700 | 223 | 129 | 6 | 75 | 294 | 112 | 307 | 8.21e-23 | 96.3 |
| MS.gene64934.t1 | AT1G60610 | 27.706 | 231 | 146 | 5 | 66 | 296 | 128 | 337 | 1.38e-22 | 96.3 |
| MS.gene64934.t1 | AT1G60610 | 27.706 | 231 | 146 | 5 | 66 | 296 | 128 | 337 | 1.38e-22 | 96.3 |
| MS.gene64934.t1 | AT1G60610 | 27.706 | 231 | 146 | 5 | 66 | 296 | 128 | 337 | 1.38e-22 | 96.3 |
| MS.gene64934.t1 | AT1G60610 | 27.706 | 231 | 146 | 5 | 66 | 296 | 128 | 337 | 1.38e-22 | 96.3 |
| MS.gene64934.t1 | AT1G60610 | 27.706 | 231 | 146 | 5 | 66 | 296 | 128 | 337 | 1.38e-22 | 96.3 |
| MS.gene64934.t1 | AT4G17680 | 30.909 | 220 | 123 | 7 | 78 | 296 | 121 | 312 | 6.10e-21 | 91.3 |
| MS.gene64934.t1 | AT4G17680 | 30.909 | 220 | 123 | 7 | 78 | 296 | 49 | 240 | 8.72e-21 | 89.4 |
| MS.gene64934.t1 | AT1G10650 | 28.837 | 215 | 128 | 4 | 83 | 296 | 90 | 280 | 1.42e-20 | 89.7 |
| MS.gene64934.t1 | AT1G10650 | 27.570 | 214 | 132 | 3 | 83 | 296 | 146 | 336 | 2.02e-20 | 90.1 |
| MS.gene64934.t1 | AT5G47050 | 27.530 | 247 | 149 | 4 | 54 | 296 | 77 | 297 | 1.12e-17 | 82.0 |
| MS.gene64934.t1 | AT4G17680 | 31.731 | 208 | 112 | 8 | 90 | 296 | 10 | 188 | 5.06e-17 | 77.8 |
Find 45 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACTGTTACCACTTTC+AGG | 0.214320 | 8.2:-50123881 | MS.gene64934:CDS |
| AGGGTAGTTATTGTTATTGA+TGG | 0.337872 | 8.2:+50123700 | None:intergenic |
| GAGAGAAACAATGATGATAA+TGG | 0.367299 | 8.2:-50123471 | MS.gene64934:CDS |
| TGCCGTTGCTGCGGCGGTGG+AGG | 0.390131 | 8.2:-50123192 | MS.gene64934:CDS |
| GTGTTCAATGTGTGGGGCTA+TGG | 0.402214 | 8.2:-50122985 | MS.gene64934:CDS |
| GATTTAACAGAATCACAAAT+AGG | 0.421677 | 8.2:+50122951 | None:intergenic |
| ATATTCATCATTACTACAAC+AGG | 0.424115 | 8.2:+50123154 | None:intergenic |
| CGTTGCTGCGGCGGTGGAGG+CGG | 0.430174 | 8.2:-50123189 | MS.gene64934:CDS |
| TGCTGCGGCGGTGGAGGCGG+AGG | 0.433823 | 8.2:-50123186 | MS.gene64934:CDS |
| AGTAATGACGGCGCAGGATA+AGG | 0.449129 | 8.2:-50123114 | MS.gene64934:CDS |
| TATGCATGGAGAATCAAATC+TGG | 0.461576 | 8.2:-50123346 | MS.gene64934:CDS |
| TATGTTTGTGTTCAATGTGT+GGG | 0.464104 | 8.2:-50122992 | MS.gene64934:CDS |
| GAAGATGGTGTCTGGTTTCA+CGG | 0.465973 | 8.2:+50123769 | None:intergenic |
| CGCCTCCACCGCCGCAGCAA+CGG | 0.480109 | 8.2:+50123190 | None:intergenic |
| TTGTAAGCGAAGATGGTGTC+TGG | 0.480918 | 8.2:+50123761 | None:intergenic |
| ATGAATATTGTGGGTGGCGT+AGG | 0.488245 | 8.2:-50123139 | MS.gene64934:CDS |
| AACGTTGTTGTAAGCGAAGA+TGG | 0.493808 | 8.2:+50123754 | None:intergenic |
| CACAAACATAAGTGTCTACA+AGG | 0.505076 | 8.2:+50123005 | None:intergenic |
| CGGAGGAAATCGGTTATGAA+AGG | 0.505897 | 8.2:+50123806 | None:intergenic |
| AAGGATGAAGGTACTAGTAG+TGG | 0.520250 | 8.2:-50123095 | MS.gene64934:CDS |
| AAAAGTGAAAACACTATGCA+TGG | 0.524997 | 8.2:-50123360 | MS.gene64934:CDS |
| AACAACAACAACGGCTGCGA+CGG | 0.528600 | 8.2:-50123236 | MS.gene64934:CDS |
| TGTAGTAATGATGAATATTG+TGG | 0.529768 | 8.2:-50123149 | MS.gene64934:CDS |
| ATAGATTATGCAGAAACTGT+GGG | 0.542740 | 8.2:-50123055 | MS.gene64934:CDS |
| TTATGTTTGTGTTCAATGTG+TGG | 0.554213 | 8.2:-50122993 | MS.gene64934:CDS |
| TTAGACGGAGAAGTTTAGAG+TGG | 0.557294 | 8.2:-50123513 | MS.gene64934:intron |
| AATAGATTATGCAGAAACTG+TGG | 0.573162 | 8.2:-50123056 | MS.gene64934:CDS |
| GTAGTAATGATGAATATTGT+GGG | 0.574573 | 8.2:-50123148 | MS.gene64934:CDS |
| GGAGGAAATCGGTTATGAAA+GGG | 0.577225 | 8.2:+50123807 | None:intergenic |
| TTATGCAGAAACTGTGGGGA+AGG | 0.589265 | 8.2:-50123050 | MS.gene64934:CDS |
| ATGTTTGTGTTCAATGTGTG+GGG | 0.595264 | 8.2:-50122991 | MS.gene64934:CDS |
| ACGGCGCAGGATAAGGATGA+AGG | 0.596413 | 8.2:-50123107 | MS.gene64934:CDS |
| TGAATATTGTGGGTGGCGTA+GGG | 0.602718 | 8.2:-50123138 | MS.gene64934:CDS |
| GTTATGAAAGGGTTGTTCGA+CGG | 0.613447 | 8.2:+50123818 | None:intergenic |
| ACGGTGGTTGTGCCTGAAAG+TGG | 0.615359 | 8.2:+50123869 | None:intergenic |
| TTGTTCGACGGAGATTGCGA+CGG | 0.619398 | 8.2:+50123830 | None:intergenic |
| TAGGGTAGTAATGACGGCGC+AGG | 0.626421 | 8.2:-50123120 | MS.gene64934:CDS |
| GTGGCGTAGGGTAGTAATGA+CGG | 0.629194 | 8.2:-50123126 | MS.gene64934:CDS |
| TTCAGGCACAACCACCGTGT+CGG | 0.634510 | 8.2:-50123864 | MS.gene64934:CDS |
| AGAAATGAAGTTGTCGATGT+CGG | 0.644465 | 8.2:+50123634 | None:intergenic |
| TGCGACGGTGAATATAGCGG+TGG | 0.671652 | 8.2:-50123221 | MS.gene64934:CDS |
| GGCTGCGACGGTGAATATAG+CGG | 0.693061 | 8.2:-50123224 | MS.gene64934:CDS |
| TAGATTATGCAGAAACTGTG+GGG | 0.698504 | 8.2:-50123054 | MS.gene64934:CDS |
| GTAATGATGAATATTGTGGG+TGG | 0.732674 | 8.2:-50123145 | MS.gene64934:CDS |
| GATGGTGTCTGGTTTCACGG+TGG | 0.760177 | 8.2:+50123772 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAATTTAGGTGAATA+AGG | + | chr8.2:50123229-50123248 | None:intergenic | 20.0% |
| !!! | TGTTCATTCTTTCAATTTTT+TGG | + | chr8.2:50123426-50123445 | None:intergenic | 20.0% |
| ! | AAAAATCTTCACTGATGAAA+GGG | + | chr8.2:50123141-50123160 | None:intergenic | 25.0% |
| ! | AAATTTAGGTGAATAAGGTA+AGG | + | chr8.2:50123224-50123243 | None:intergenic | 25.0% |
| ! | ATATTCATCATTACTACAAC+AGG | + | chr8.2:50123668-50123687 | None:intergenic | 25.0% |
| ! | GATTTAACAGAATCACAAAT+AGG | + | chr8.2:50123871-50123890 | None:intergenic | 25.0% |
| ! | GTAGTAATGATGAATATTGT+GGG | - | chr8.2:50123671-50123690 | MS.gene64934:CDS | 25.0% |
| ! | TGTAGTAATGATGAATATTG+TGG | - | chr8.2:50123670-50123689 | MS.gene64934:CDS | 25.0% |
| AAAAGTGAAAACACTATGCA+TGG | - | chr8.2:50123459-50123478 | MS.gene64934:CDS | 30.0% | |
| AATAGATTATGCAGAAACTG+TGG | - | chr8.2:50123763-50123782 | MS.gene64934:CDS | 30.0% | |
| ATAGATTATGCAGAAACTGT+GGG | - | chr8.2:50123764-50123783 | MS.gene64934:CDS | 30.0% | |
| CAAAACAACAACAACAACAA+CGG | - | chr8.2:50123574-50123593 | MS.gene64934:intron | 30.0% | |
| GAAAAATCTTCACTGATGAA+AGG | + | chr8.2:50123142-50123161 | None:intergenic | 30.0% | |
| GAGAGAAACAATGATGATAA+TGG | - | chr8.2:50123348-50123367 | MS.gene64934:CDS | 30.0% | |
| TATGTTTGTGTTCAATGTGT+GGG | - | chr8.2:50123827-50123846 | MS.gene64934:CDS | 30.0% | |
| TTATGTTTGTGTTCAATGTG+TGG | - | chr8.2:50123826-50123845 | MS.gene64934:CDS | 30.0% | |
| ! | AGGGTAGTTATTGTTATTGA+TGG | + | chr8.2:50123122-50123141 | None:intergenic | 30.0% |
| !! | TGTTTTGCATTTGTTGCATA+AGG | + | chr8.2:50123561-50123580 | None:intergenic | 30.0% |
| !!! | AATCTCTAGAACGTTTTTGT+GGG | + | chr8.2:50123099-50123118 | None:intergenic | 30.0% |
| !!! | TATTTTTTGACGGAGGAAAT+CGG | + | chr8.2:50123026-50123045 | None:intergenic | 30.0% |
| !!! | TGCATGTGTGTTTTTTTAGA+CGG | - | chr8.2:50123291-50123310 | MS.gene64934:CDS | 30.0% |
| AGAAATGAAGTTGTCGATGT+CGG | + | chr8.2:50123188-50123207 | None:intergenic | 35.0% | |
| ATGTTTGTGTTCAATGTGTG+GGG | - | chr8.2:50123828-50123847 | MS.gene64934:CDS | 35.0% | |
| CACAAACATAAGTGTCTACA+AGG | + | chr8.2:50123817-50123836 | None:intergenic | 35.0% | |
| GTAATGATGAATATTGTGGG+TGG | - | chr8.2:50123674-50123693 | MS.gene64934:CDS | 35.0% | |
| TAGATTATGCAGAAACTGTG+GGG | - | chr8.2:50123765-50123784 | MS.gene64934:CDS | 35.0% | |
| TATGCATGGAGAATCAAATC+TGG | - | chr8.2:50123473-50123492 | MS.gene64934:CDS | 35.0% | |
| !!! | GAATCTCTAGAACGTTTTTG+TGG | + | chr8.2:50123100-50123119 | None:intergenic | 35.0% |
| !!! | TCACGGTGGATATTTTTTGA+CGG | + | chr8.2:50123036-50123055 | None:intergenic | 35.0% |
| AACGTTGTTGTAAGCGAAGA+TGG | + | chr8.2:50123068-50123087 | None:intergenic | 40.0% | |
| GGAGGAAATCGGTTATGAAA+GGG | + | chr8.2:50123015-50123034 | None:intergenic | 40.0% | |
| GTTATGAAAGGGTTGTTCGA+CGG | + | chr8.2:50123004-50123023 | None:intergenic | 40.0% | |
| TCATCACTGTTACCACTTTC+AGG | - | chr8.2:50122938-50122957 | MS.gene64934:CDS | 40.0% | |
| TTAGACGGAGAAGTTTAGAG+TGG | - | chr8.2:50123306-50123325 | MS.gene64934:CDS | 40.0% | |
| !! | AAGGATGAAGGTACTAGTAG+TGG | - | chr8.2:50123724-50123743 | MS.gene64934:CDS | 40.0% |
| ATGAATATTGTGGGTGGCGT+AGG | - | chr8.2:50123680-50123699 | MS.gene64934:CDS | 45.0% | |
| CGGAGGAAATCGGTTATGAA+AGG | + | chr8.2:50123016-50123035 | None:intergenic | 45.0% | |
| TGAATATTGTGGGTGGCGTA+GGG | - | chr8.2:50123681-50123700 | MS.gene64934:CDS | 45.0% | |
| TTATGCAGAAACTGTGGGGA+AGG | - | chr8.2:50123769-50123788 | MS.gene64934:CDS | 45.0% | |
| TTGTAAGCGAAGATGGTGTC+TGG | + | chr8.2:50123061-50123080 | None:intergenic | 45.0% | |
| ! | AATGAGATTTTCCGACACGG+TGG | + | chr8.2:50122969-50122988 | None:intergenic | 45.0% |
| ! | CGGAATGAGATTTTCCGACA+CGG | + | chr8.2:50122972-50122991 | None:intergenic | 45.0% |
| ! | GAAGATGGTGTCTGGTTTCA+CGG | + | chr8.2:50123053-50123072 | None:intergenic | 45.0% |
| !! | TGTCGATGTCGGTGTTTTGA+TGG | + | chr8.2:50123177-50123196 | None:intergenic | 45.0% |
| !!! | CGGTGGATATTTTTTGACGG+AGG | + | chr8.2:50123033-50123052 | None:intergenic | 45.0% |
| !! | AAATAAAAAAACAAAAATTT+AGG | + | chr8.2:50123238-50123257 | None:intergenic | 5.0% |
| AACAACAACAACGGCTGCGA+CGG | - | chr8.2:50123583-50123602 | MS.gene64934:intron | 50.0% | |
| AGTAATGACGGCGCAGGATA+AGG | - | chr8.2:50123705-50123724 | MS.gene64934:CDS | 50.0% | |
| GTGGCGTAGGGTAGTAATGA+CGG | - | chr8.2:50123693-50123712 | MS.gene64934:CDS | 50.0% | |
| GTGTTCAATGTGTGGGGCTA+TGG | - | chr8.2:50123834-50123853 | MS.gene64934:CDS | 50.0% | |
| TTGTTCGACGGAGATTGCGA+CGG | + | chr8.2:50122992-50123011 | None:intergenic | 50.0% | |
| ! | TGGTGATTTTGCCGTTGCTG+CGG | - | chr8.2:50123618-50123637 | MS.gene64934:intron | 50.0% |
| !!! | CGATGTCGGTGTTTTGATGG+TGG | + | chr8.2:50123174-50123193 | None:intergenic | 50.0% |
| ACGGCGCAGGATAAGGATGA+AGG | - | chr8.2:50123712-50123731 | MS.gene64934:CDS | 55.0% | |
| ACGGTGGTTGTGCCTGAAAG+TGG | + | chr8.2:50122953-50122972 | None:intergenic | 55.0% | |
| GGCTGCGACGGTGAATATAG+CGG | - | chr8.2:50123595-50123614 | MS.gene64934:intron | 55.0% | |
| TAGGGTAGTAATGACGGCGC+AGG | - | chr8.2:50123699-50123718 | MS.gene64934:CDS | 55.0% | |
| TGCGACGGTGAATATAGCGG+TGG | - | chr8.2:50123598-50123617 | MS.gene64934:intron | 55.0% | |
| TTCAGGCACAACCACCGTGT+CGG | - | chr8.2:50122955-50122974 | MS.gene64934:CDS | 55.0% | |
| ! | GATGGTGTCTGGTTTCACGG+TGG | + | chr8.2:50123050-50123069 | None:intergenic | 55.0% |
| ! | TGATTTTGCCGTTGCTGCGG+CGG | - | chr8.2:50123621-50123640 | MS.gene64934:intron | 55.0% |
| ! | TTTTGCCGTTGCTGCGGCGG+TGG | - | chr8.2:50123624-50123643 | MS.gene64934:intron | 65.0% |
| CGCCTCCACCGCCGCAGCAA+CGG | + | chr8.2:50123632-50123651 | None:intergenic | 75.0% | |
| CGTTGCTGCGGCGGTGGAGG+CGG | - | chr8.2:50123630-50123649 | MS.gene64934:CDS | 75.0% | |
| TGCCGTTGCTGCGGCGGTGG+AGG | - | chr8.2:50123627-50123646 | MS.gene64934:intron | 75.0% | |
| ! | TGCTGCGGCGGTGGAGGCGG+AGG | - | chr8.2:50123633-50123652 | MS.gene64934:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 50122923 | 50123918 | 50122923 | ID=MS.gene64934 |
| chr8.2 | mRNA | 50122923 | 50123918 | 50122923 | ID=MS.gene64934.t1;Parent=MS.gene64934 |
| chr8.2 | exon | 50123628 | 50123918 | 50123628 | ID=MS.gene64934.t1.exon1;Parent=MS.gene64934.t1 |
| chr8.2 | CDS | 50123628 | 50123918 | 50123628 | ID=cds.MS.gene64934.t1;Parent=MS.gene64934.t1 |
| chr8.2 | exon | 50122923 | 50123531 | 50122923 | ID=MS.gene64934.t1.exon2;Parent=MS.gene64934.t1 |
| chr8.2 | CDS | 50122923 | 50123531 | 50122923 | ID=cds.MS.gene64934.t1;Parent=MS.gene64934.t1 |
| Gene Sequence |
| Protein sequence |
