Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66818.t1 | XP_003594195.1 | 99.1 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 3.80E-55 | 223.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66818.t1 | O49636 | 86.0 | 100 | 14 | 0 | 1 | 100 | 1 | 100 | 3.5e-49 | 195.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66818.t1 | Q2HVG1 | 99.1 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 2.7e-55 | 223.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene66818 | 0.808681 | 2.75E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene66818 | 0.828859 | 7.11E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene66818 | 0.83365 | 4.72E-56 | -1.69E-46 |
| MS.gene050317 | MS.gene66818 | 0.814681 | 1.36E-51 | -1.69E-46 |
| MS.gene050320 | MS.gene66818 | 0.821704 | 3.51E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene66818 | 0.814371 | 1.59E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene66818 | 0.875583 | 2.75E-68 | -1.69E-46 |
| MS.gene051003 | MS.gene66818 | 0.820731 | 5.87E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene66818 | 0.801009 | 1.10E-48 | -1.69E-46 |
| MS.gene051233 | MS.gene66818 | 0.807663 | 4.53E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene66818 | 0.812893 | 3.37E-51 | -1.69E-46 |
| MS.gene051687 | MS.gene66818 | 0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene66818 | 0.848924 | 4.50E-60 | -1.69E-46 |
| MS.gene051748 | MS.gene66818 | 0.868382 | 6.81E-66 | -1.69E-46 |
| MS.gene051756 | MS.gene66818 | 0.873356 | 1.57E-67 | -1.69E-46 |
| MS.gene051757 | MS.gene66818 | 0.821691 | 3.53E-53 | -1.69E-46 |
| MS.gene051850 | MS.gene66818 | 0.83712 | 6.27E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene66818 | 0.874287 | 7.60E-68 | -1.69E-46 |
| MS.gene052335 | MS.gene66818 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene052818 | MS.gene66818 | -0.816407 | 5.62E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene66818 | 0.820247 | 7.59E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene66818 | 0.812671 | 3.77E-51 | -1.69E-46 |
| MS.gene053381 | MS.gene66818 | 0.809146 | 2.19E-50 | -1.69E-46 |
| MS.gene05344 | MS.gene66818 | -0.803692 | 3.09E-49 | -1.69E-46 |
| MS.gene053677 | MS.gene66818 | 0.80011 | 1.68E-48 | -1.69E-46 |
| MS.gene053952 | MS.gene66818 | 0.833292 | 5.80E-56 | -1.69E-46 |
| MS.gene054403 | MS.gene66818 | 0.812076 | 5.09E-51 | -1.69E-46 |
| MS.gene055424 | MS.gene66818 | 0.838331 | 3.06E-57 | -1.69E-46 |
| MS.gene056075 | MS.gene66818 | 0.805143 | 1.54E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene66818 | 0.810686 | 1.02E-50 | -1.69E-46 |
| MS.gene056580 | MS.gene66818 | 0.800287 | 1.55E-48 | -1.69E-46 |
| MS.gene056752 | MS.gene66818 | 0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene66818 | 0.804805 | 1.81E-49 | -1.69E-46 |
| MS.gene056830 | MS.gene66818 | -0.801612 | 8.29E-49 | -1.69E-46 |
| MS.gene056992 | MS.gene66818 | 0.83489 | 2.31E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene66818 | 0.810856 | 9.36E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene66818 | 0.880213 | 6.60E-70 | -1.69E-46 |
| MS.gene057234 | MS.gene66818 | 0.834329 | 3.19E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene66818 | 0.823149 | 1.62E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene66818 | 0.807232 | 5.59E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene66818 | 0.810831 | 9.48E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene66818 | 0.811058 | 8.46E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene66818 | 0.830008 | 3.74E-55 | -1.69E-46 |
| MS.gene058654 | MS.gene66818 | 0.822207 | 2.68E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene66818 | 0.820818 | 5.61E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene66818 | 0.854589 | 1.11E-61 | -1.69E-46 |
| MS.gene059171 | MS.gene66818 | 0.82932 | 5.50E-55 | -1.69E-46 |
| MS.gene059360 | MS.gene66818 | 0.802058 | 6.72E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene66818 | 0.840459 | 8.59E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene66818 | 0.834428 | 3.02E-56 | -1.69E-46 |
| MS.gene060463 | MS.gene66818 | 0.811375 | 7.22E-51 | -1.69E-46 |
| MS.gene060465 | MS.gene66818 | 0.814831 | 1.26E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene66818 | 0.800244 | 1.58E-48 | -1.69E-46 |
| MS.gene060869 | MS.gene66818 | 0.809 | 2.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66818 | MS.gene76206 | PPI |
| MS.gene66818 | MS.gene029307 | PPI |
| MS.gene66818 | MS.gene74955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66818.t1 | MTR_2g025480 | 99.057 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 7.24e-76 | 219 |
| MS.gene66818.t1 | MTR_2g025470 | 69.811 | 106 | 32 | 0 | 1 | 106 | 1 | 106 | 5.71e-55 | 166 |
| MS.gene66818.t1 | MTR_2g025470 | 72.340 | 94 | 26 | 0 | 1 | 94 | 1 | 94 | 8.20e-50 | 153 |
| MS.gene66818.t1 | MTR_2g025470 | 73.913 | 69 | 18 | 0 | 1 | 69 | 1 | 69 | 2.08e-35 | 116 |
| MS.gene66818.t1 | MTR_1g112340 | 36.634 | 101 | 64 | 0 | 6 | 106 | 4 | 104 | 1.70e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66818.t1 | AT4G22310 | 86.000 | 100 | 14 | 0 | 1 | 100 | 1 | 100 | 1.76e-64 | 190 |
| MS.gene66818.t1 | AT4G14695 | 78.704 | 108 | 21 | 1 | 1 | 106 | 1 | 108 | 1.01e-60 | 181 |
| MS.gene66818.t1 | AT4G14695 | 78.704 | 108 | 21 | 1 | 1 | 106 | 1 | 108 | 1.01e-60 | 181 |
| MS.gene66818.t1 | AT4G05590 | 80.000 | 100 | 20 | 0 | 1 | 100 | 1 | 100 | 5.79e-60 | 179 |
| MS.gene66818.t1 | AT4G05590 | 57.971 | 138 | 20 | 1 | 1 | 100 | 1 | 138 | 8.64e-53 | 162 |
| MS.gene66818.t1 | AT4G05590 | 88.406 | 69 | 8 | 0 | 1 | 69 | 1 | 69 | 1.21e-42 | 134 |
| MS.gene66818.t1 | AT4G14695 | 62.037 | 108 | 21 | 2 | 1 | 106 | 1 | 90 | 2.36e-41 | 131 |
| MS.gene66818.t1 | AT5G20090 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 1.88e-22 | 84.7 |
| MS.gene66818.t1 | AT5G20090 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 1.88e-22 | 84.7 |
| MS.gene66818.t1 | AT5G20090 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 1.88e-22 | 84.7 |
| MS.gene66818.t1 | AT5G20090 | 41.489 | 94 | 55 | 0 | 1 | 94 | 1 | 94 | 6.29e-21 | 80.1 |
Find 21 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAAGTAACTCACTGGTTT+TGG | 0.211024 | 2.3:-63569076 | None:intergenic |
| CTTCAAAGCTTCAAGCATTC+TGG | 0.222791 | 2.3:+63569037 | MS.gene66818:CDS |
| CTTTCCTATCCTCAACAAAT+AGG | 0.357519 | 2.3:+63570601 | MS.gene66818:CDS |
| TTGCAACGTTCACAGCAAAA+AGG | 0.357937 | 2.3:-63571614 | None:intergenic |
| TGAGGATAGGAAAGCTTCTC+TGG | 0.382144 | 2.3:-63570592 | None:intergenic |
| ATTTGCGTGACAGTTGGTAT+AGG | 0.405723 | 2.3:-63571650 | None:intergenic |
| GACACAGCTGTTACAGCTAC+TGG | 0.418439 | 2.3:+63570834 | MS.gene66818:intron |
| TTACAGCTACTGGACTTATC+TGG | 0.420347 | 2.3:+63570844 | MS.gene66818:CDS |
| AACGTTGCAATGGCAGGAAC+TGG | 0.478710 | 2.3:+63571627 | MS.gene66818:CDS |
| CTGATACCCCACTTAAATGT+AGG | 0.491087 | 2.3:-63570538 | None:intergenic |
| TTTGGGCACCTACATTTAAG+TGG | 0.501597 | 2.3:+63570530 | MS.gene66818:CDS |
| CATACCTATTTGTTGAGGAT+AGG | 0.535886 | 2.3:-63570605 | None:intergenic |
| TTGGGCACCTACATTTAAGT+GGG | 0.548150 | 2.3:+63570531 | MS.gene66818:CDS |
| GCTGTGAACGTTGCAATGGC+AGG | 0.549298 | 2.3:+63571621 | MS.gene66818:CDS |
| ACCGCAATTTGCGTGACAGT+TGG | 0.577855 | 2.3:-63571656 | None:intergenic |
| GCATTCTGGAATCATCCAGC+TGG | 0.579572 | 2.3:+63569051 | MS.gene66818:CDS |
| ACCAACTGTCACGCAAATTG+CGG | 0.595594 | 2.3:+63571655 | MS.gene66818:CDS |
| ATGCGCATACCTATTTGTTG+AGG | 0.604492 | 2.3:-63570610 | None:intergenic |
| GCAAGATTATTCGTCAGAGA+AGG | 0.608255 | 2.3:+63572080 | MS.gene66818:CDS |
| GGATAGGAAAGCTTCTCTGG+TGG | 0.644326 | 2.3:-63570589 | None:intergenic |
| TGGGCACCTACATTTAAGTG+GGG | 0.659300 | 2.3:+63570532 | MS.gene66818:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTCAAATTAAGTTAAT+CGG | - | chr2.3:63569257-63569276 | None:intergenic | 15.0% |
| !! | AAATCATATATACAAAGTTA+TGG | + | chr2.3:63569599-63569618 | MS.gene66818:intron | 15.0% |
| !!! | TAACTTTGTATATATGATTT+TGG | - | chr2.3:63569599-63569618 | None:intergenic | 15.0% |
| !! | AAGGATTTAATTGATAAAAG+TGG | - | chr2.3:63570090-63570109 | None:intergenic | 20.0% |
| !! | AAGGTTAAACTACAAAATAA+AGG | - | chr2.3:63571955-63571974 | None:intergenic | 20.0% |
| !! | ACAATTAACTAAATGAACTT+TGG | + | chr2.3:63571413-63571432 | MS.gene66818:intron | 20.0% |
| !! | ACTTATTATTATCAAAGATC+TGG | + | chr2.3:63569388-63569407 | MS.gene66818:intron | 20.0% |
| !! | AGTATATATTCTCATGTATT+GGG | + | chr2.3:63570771-63570790 | MS.gene66818:intron | 20.0% |
| !! | ATGAAATATAGAAATACTAG+TGG | + | chr2.3:63570940-63570959 | MS.gene66818:intron | 20.0% |
| !! | CCAAATTCAATAGAAATATT+AGG | - | chr2.3:63570175-63570194 | None:intergenic | 20.0% |
| !! | GATAAAAGTGGTTAAATATA+GGG | - | chr2.3:63570078-63570097 | None:intergenic | 20.0% |
| !! | GTTAAGATTACATATAAGTA+TGG | - | chr2.3:63572042-63572061 | None:intergenic | 20.0% |
| !! | TAGTATATATTCTCATGTAT+TGG | + | chr2.3:63570770-63570789 | MS.gene66818:intron | 20.0% |
| !! | TGATAAAAGTGGTTAAATAT+AGG | - | chr2.3:63570079-63570098 | None:intergenic | 20.0% |
| !! | TTCATAAATAAAAACACGAA+TGG | - | chr2.3:63569121-63569140 | None:intergenic | 20.0% |
| !! | TTGATTGCTTTGTAAAAATT+GGG | + | chr2.3:63569275-63569294 | MS.gene66818:intron | 20.0% |
| !! | TTTAATCATAATGTAGCAAA+TGG | - | chr2.3:63571725-63571744 | None:intergenic | 20.0% |
| !! | TTTGATTGCTTTGTAAAAAT+TGG | + | chr2.3:63569274-63569293 | MS.gene66818:intron | 20.0% |
| !!! | AAGTTTTGTTGTTTTTTCAA+AGG | + | chr2.3:63570896-63570915 | MS.gene66818:intron | 20.0% |
| !!! | AGAAATACACATTTTCAAAA+GGG | - | chr2.3:63570675-63570694 | None:intergenic | 20.0% |
| !!! | ATCTAGTTTATTTTCTTTAG+TGG | + | chr2.3:63571832-63571851 | MS.gene66818:intron | 20.0% |
| !!! | CCTAATATTTCTATTGAATT+TGG | + | chr2.3:63570172-63570191 | MS.gene66818:intron | 20.0% |
| !!! | GTTTTAAGGTTTTTATTTCT+TGG | - | chr2.3:63571306-63571325 | None:intergenic | 20.0% |
| !!! | TAAAAATTGGGTCATTTTTA+GGG | + | chr2.3:63569287-63569306 | MS.gene66818:intron | 20.0% |
| !!! | TAACTTCGTATATATGATTT+TGG | + | chr2.3:63570000-63570019 | MS.gene66818:intron | 20.0% |
| !!! | TCTAGTTTATTTTCTTTAGT+GGG | + | chr2.3:63571833-63571852 | MS.gene66818:intron | 20.0% |
| ! | AAAGTAGAGGACTAATTTAT+TGG | - | chr2.3:63569499-63569518 | None:intergenic | 25.0% |
| ! | AACATCACCAAAATATATCA+TGG | - | chr2.3:63571987-63572006 | None:intergenic | 25.0% |
| ! | ACATTATGATTAAATGTGCA+TGG | + | chr2.3:63571731-63571750 | MS.gene66818:intron | 25.0% |
| ! | ATTCCATAATTCATTCACTT+GGG | - | chr2.3:63570723-63570742 | None:intergenic | 25.0% |
| ! | CAAATCCAATAACTGTTATA+CGG | - | chr2.3:63569173-63569192 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAAAACTTAC+TGG | - | chr2.3:63570894-63570913 | None:intergenic | 25.0% |
| ! | GGAATTATAAACGAAATTGT+TGG | + | chr2.3:63569409-63569428 | MS.gene66818:intron | 25.0% |
| ! | TAACTAAGCAACAAAAAAAC+AGG | - | chr2.3:63571182-63571201 | None:intergenic | 25.0% |
| ! | TTACTATGTTGCAGAAAAAT+TGG | + | chr2.3:63571589-63571608 | MS.gene66818:intron | 25.0% |
| !! | CAGAAATACACATTTTCAAA+AGG | - | chr2.3:63570676-63570695 | None:intergenic | 25.0% |
| !! | GTATTTCTGAATTCTTTGAA+AGG | + | chr2.3:63570687-63570706 | MS.gene66818:intron | 25.0% |
| !! | TATATACTGACTATCCAATT+AGG | + | chr2.3:63569819-63569838 | MS.gene66818:intron | 25.0% |
| !!! | ATCATCAACAAAGTACTTTT+GGG | - | chr2.3:63571757-63571776 | None:intergenic | 25.0% |
| !!! | GTAAAAATTGGGTCATTTTT+AGG | + | chr2.3:63569286-63569305 | MS.gene66818:intron | 25.0% |
| !!! | TATCATCAACAAAGTACTTT+TGG | - | chr2.3:63571758-63571777 | None:intergenic | 25.0% |
| !!! | TCGTTGTTTTTCATTTGATA+AGG | + | chr2.3:63569142-63569161 | MS.gene66818:intron | 25.0% |
| AAATTAGTCCTCTACTTTGT+AGG | + | chr2.3:63569501-63569520 | MS.gene66818:intron | 30.0% | |
| AACCTTAAAACCTTATGCTA+TGG | + | chr2.3:63571315-63571334 | MS.gene66818:intron | 30.0% | |
| AACTAACATGTCAAGGATTA+TGG | - | chr2.3:63571561-63571580 | None:intergenic | 30.0% | |
| ATATAAACTTCTCTCTCTAC+TGG | - | chr2.3:63569802-63569821 | None:intergenic | 30.0% | |
| ATTCTATTAAACTGCCAAGT+TGG | + | chr2.3:63570051-63570070 | MS.gene66818:intron | 30.0% | |
| CATGAAAGACAAACAAACTA+GGG | + | chr2.3:63569683-63569702 | MS.gene66818:intron | 30.0% | |
| CATTCCATAATTCATTCACT+TGG | - | chr2.3:63570724-63570743 | None:intergenic | 30.0% | |
| CGTATAACAGTTATTGGATT+TGG | + | chr2.3:63569171-63569190 | MS.gene66818:intron | 30.0% | |
| GAAAATTGAGAACTACTACA+TGG | + | chr2.3:63571472-63571491 | MS.gene66818:intron | 30.0% | |
| GGTGAAAAATGCAATCTATT+TGG | - | chr2.3:63570390-63570409 | None:intergenic | 30.0% | |
| TAACAAGTGGGTAAAACATA+AGG | - | chr2.3:63570109-63570128 | None:intergenic | 30.0% | |
| TACTTCCGTATAACAGTTAT+TGG | + | chr2.3:63569165-63569184 | MS.gene66818:intron | 30.0% | |
| TTAGCCACAAACTTTCAATT+TGG | + | chr2.3:63570147-63570166 | MS.gene66818:intron | 30.0% | |
| TTTCAAAATGCTTCTGATGT+TGG | + | chr2.3:63569555-63569574 | MS.gene66818:intron | 30.0% | |
| ! | AATCGTATAAAGCATCAAGA+AGG | - | chr2.3:63569726-63569745 | None:intergenic | 30.0% |
| ! | ATCGTATAAAGCATCAAGAA+GGG | - | chr2.3:63569725-63569744 | None:intergenic | 30.0% |
| ! | CTTTGGTTCACTTATCATAA+TGG | + | chr2.3:63571430-63571449 | MS.gene66818:intron | 30.0% |
| ! | GTGATAGCCATGATATATTT+TGG | + | chr2.3:63571977-63571996 | MS.gene66818:intron | 30.0% |
| ! | TATTTTGTGCAGTTCACTTT+TGG | + | chr2.3:63570512-63570531 | MS.gene66818:intron | 30.0% |
| ! | TGTATATTGACTATCCCATT+AGG | - | chr2.3:63569773-63569792 | None:intergenic | 30.0% |
| ! | TTTTGATGCTTCATGAAACT+TGG | + | chr2.3:63569365-63569384 | MS.gene66818:intron | 30.0% |
| ! | TTTTGCAAAATCAGCAACAT+TGG | - | chr2.3:63570569-63570588 | None:intergenic | 30.0% |
| !! | ATTTTGTGCAGTTCACTTTT+GGG | + | chr2.3:63570513-63570532 | MS.gene66818:intron | 30.0% |
| !! | GTACTTTGTTGATGATATGT+TGG | + | chr2.3:63571761-63571780 | MS.gene66818:intron | 30.0% |
| !! | TGTTTGAGTTTCCCATTTTT+GGG | - | chr2.3:63571803-63571822 | None:intergenic | 30.0% |
| !! | TTGTTGATGATATGTTGGTT+TGG | + | chr2.3:63571766-63571785 | MS.gene66818:intron | 30.0% |
| !!! | TTTCCTACTCTTATTTTCTC+CGG | - | chr2.3:63571456-63571475 | None:intergenic | 30.0% |
| AAAGACAAACAAACTAGGGT+TGG | + | chr2.3:63569687-63569706 | MS.gene66818:intron | 35.0% | |
| AAATGTTGCTGTGTCAATTG+AGG | - | chr2.3:63571373-63571392 | None:intergenic | 35.0% | |
| AAGACAAACAAACTAGGGTT+GGG | + | chr2.3:63569688-63569707 | MS.gene66818:intron | 35.0% | |
| AAGAGACAACAGTTTGAATC+AGG | - | chr2.3:63570411-63570430 | None:intergenic | 35.0% | |
| AAGTGTGTATGAGTGTATTC+TGG | + | chr2.3:63569747-63569766 | MS.gene66818:intron | 35.0% | |
| ACAGCTGTGTCAAAAAGAAA+AGG | - | chr2.3:63570825-63570844 | None:intergenic | 35.0% | |
| AGACCAAATTGCTAACAAGT+GGG | - | chr2.3:63570121-63570140 | None:intergenic | 35.0% | |
| AGTGAACTGCACAAAATAAG+TGG | - | chr2.3:63570510-63570529 | None:intergenic | 35.0% | |
| ATGCCCAAGTGAATGAATTA+TGG | + | chr2.3:63570717-63570736 | MS.gene66818:intron | 35.0% | |
| ATGTGATGTGTGCATAATTC+AGG | + | chr2.3:63571036-63571055 | MS.gene66818:intron | 35.0% | |
| CACATCACATATAGTGATGA+AGG | - | chr2.3:63571026-63571045 | None:intergenic | 35.0% | |
| CCATGAAAGACAAACAAACT+AGG | + | chr2.3:63569682-63569701 | MS.gene66818:intron | 35.0% | |
| CTTAAAACCTTATGCTATGG+TGG | + | chr2.3:63571318-63571337 | MS.gene66818:intron | 35.0% | |
| CTTTCCTATCCTCAACAAAT+AGG | + | chr2.3:63570601-63570620 | MS.gene66818:CDS | 35.0% | |
| GAAAATTCGAAGTAACTCAC+TGG | - | chr2.3:63569085-63569104 | None:intergenic | 35.0% | |
| GGAACCAAATTGAAAGTTTG+TGG | - | chr2.3:63570154-63570173 | None:intergenic | 35.0% | |
| GTTAAATATAGGGACCAACT+TGG | - | chr2.3:63570068-63570087 | None:intergenic | 35.0% | |
| TAATCTCGAGAACCTATTTG+AGG | + | chr2.3:63570260-63570279 | MS.gene66818:intron | 35.0% | |
| TAGTTGCAACTAACATGTCA+AGG | - | chr2.3:63571568-63571587 | None:intergenic | 35.0% | |
| TATATACTGAGAGAGCTGAT+TGG | - | chr2.3:63571275-63571294 | None:intergenic | 35.0% | |
| TATATCATGGCTATCACACA+AGG | - | chr2.3:63571974-63571993 | None:intergenic | 35.0% | |
| TGAGTGTATTCTGACCTAAT+TGG | - | chr2.3:63569836-63569855 | None:intergenic | 35.0% | |
| TTTAACACCACCATAGCATA+AGG | - | chr2.3:63571328-63571347 | None:intergenic | 35.0% | |
| ! | CACCATAGCATAAGGTTTTA+AGG | - | chr2.3:63571320-63571339 | None:intergenic | 35.0% |
| ! | CATACCTATTTGTTGAGGAT+AGG | - | chr2.3:63570608-63570627 | None:intergenic | 35.0% |
| ! | TTACCCACTTGTTAGCAATT+TGG | + | chr2.3:63570115-63570134 | MS.gene66818:intron | 35.0% |
| ! | TTGACAACAACATTGATGAC+TGG | - | chr2.3:63570442-63570461 | None:intergenic | 35.0% |
| !! | CCTAGTTTGTTTGTCTTTCA+TGG | - | chr2.3:63569685-63569704 | None:intergenic | 35.0% |
| !! | GTGTTTGAGTTTCCCATTTT+TGG | - | chr2.3:63571804-63571823 | None:intergenic | 35.0% |
| AAACATGTACCTTGTATGCG+AGG | + | chr2.3:63569636-63569655 | MS.gene66818:intron | 40.0% | |
| AAGCCATGAGAGACAAACTA+GGG | - | chr2.3:63569901-63569920 | None:intergenic | 40.0% | |
| AATGATCCATCGATCAGACA+AGG | + | chr2.3:63569946-63569965 | MS.gene66818:intron | 40.0% | |
| AGATCACGCAAACAACAGTA+GGG | - | chr2.3:63571236-63571255 | None:intergenic | 40.0% | |
| AGTGGTCTGAAGATCATTTG+TGG | + | chr2.3:63570958-63570977 | MS.gene66818:intron | 40.0% | |
| ATGAGTGTATTCTGGCCTAA+TGG | + | chr2.3:63569755-63569774 | MS.gene66818:intron | 40.0% | |
| CTGATACCCCACTTAAATGT+AGG | - | chr2.3:63570541-63570560 | None:intergenic | 40.0% | |
| CTTCAAAGCTTCAAGCATTC+TGG | + | chr2.3:63569037-63569056 | MS.gene66818:CDS | 40.0% | |
| GAATTTGGATCCTGACTCTA+AGG | + | chr2.3:63570187-63570206 | MS.gene66818:intron | 40.0% | |
| GAGACCAAATTGCTAACAAG+TGG | - | chr2.3:63570122-63570141 | None:intergenic | 40.0% | |
| GAGTCAAATTTGACAGAGAC+TGG | + | chr2.3:63570218-63570237 | MS.gene66818:intron | 40.0% | |
| GCAAGATTATTCGTCAGAGA+AGG | + | chr2.3:63572080-63572099 | MS.gene66818:CDS | 40.0% | |
| GGTTCACTTATCATAATGGC+CGG | + | chr2.3:63571434-63571453 | MS.gene66818:intron | 40.0% | |
| GTGTGAAGTAGCATAATGTG+AGG | + | chr2.3:63569441-63569460 | MS.gene66818:intron | 40.0% | |
| TAACTCGTTATCTACTTCCC+AGG | + | chr2.3:63572058-63572077 | MS.gene66818:intron | 40.0% | |
| TCATACTAGTCCTTAGAGTC+AGG | - | chr2.3:63570200-63570219 | None:intergenic | 40.0% | |
| TCTGACGAATAATCTTGCCT+GGG | - | chr2.3:63572078-63572097 | None:intergenic | 40.0% | |
| TCTGATCGATGGATCATTCA+GGG | - | chr2.3:63569944-63569963 | None:intergenic | 40.0% | |
| TGAGTGTATTCTGGCCTAAT+GGG | + | chr2.3:63569756-63569775 | MS.gene66818:intron | 40.0% | |
| TTACAGCTACTGGACTTATC+TGG | + | chr2.3:63570844-63570863 | MS.gene66818:CDS | 40.0% | |
| TTGCAACGTTCACAGCAAAA+AGG | - | chr2.3:63571617-63571636 | None:intergenic | 40.0% | |
| TTGGGCACCTACATTTAAGT+GGG | + | chr2.3:63570531-63570550 | MS.gene66818:CDS | 40.0% | |
| TTTGGGCACCTACATTTAAG+TGG | + | chr2.3:63570530-63570549 | MS.gene66818:CDS | 40.0% | |
| ! | ATGCGCATACCTATTTGTTG+AGG | - | chr2.3:63570613-63570632 | None:intergenic | 40.0% |
| ! | ATTTGCGTGACAGTTGGTAT+AGG | - | chr2.3:63571653-63571672 | None:intergenic | 40.0% |
| ! | CTGAATTCTTTGAAAGGAGC+AGG | + | chr2.3:63570693-63570712 | MS.gene66818:intron | 40.0% |
| !! | ATCCTGAAGAGCATTGTAGA+AGG | + | chr2.3:63571901-63571920 | MS.gene66818:intron | 40.0% |
| !! | TTTTGCTGTGAACGTTGCAA+TGG | + | chr2.3:63571617-63571636 | MS.gene66818:CDS | 40.0% |
| !!! | CGAAGTAACTCACTGGTTTT+GGG | - | chr2.3:63569078-63569097 | None:intergenic | 40.0% |
| !!! | TCGAAGTAACTCACTGGTTT+TGG | - | chr2.3:63569079-63569098 | None:intergenic | 40.0% |
| AAATTCATCCCCAACTCTGC+AGG | - | chr2.3:63570290-63570309 | None:intergenic | 45.0% | |
| ACCAACTGTCACGCAAATTG+CGG | + | chr2.3:63571655-63571674 | MS.gene66818:CDS | 45.0% | |
| AGAGTTGGGGATGAATTTGG+TGG | + | chr2.3:63570292-63570311 | MS.gene66818:intron | 45.0% | |
| CACACACTTTGATCGTACAG+AGG | + | chr2.3:63569854-63569873 | MS.gene66818:intron | 45.0% | |
| CAGATCACGCAAACAACAGT+AGG | - | chr2.3:63571237-63571256 | None:intergenic | 45.0% | |
| CGATTGAGCTATCATGAGAG+AGG | + | chr2.3:63569659-63569678 | MS.gene66818:intron | 45.0% | |
| CTCTGACGAATAATCTTGCC+TGG | - | chr2.3:63572079-63572098 | None:intergenic | 45.0% | |
| GAAGCCATGAGAGACAAACT+AGG | - | chr2.3:63569902-63569921 | None:intergenic | 45.0% | |
| GTCCTTCTACAATGCTCTTC+AGG | - | chr2.3:63571906-63571925 | None:intergenic | 45.0% | |
| GTCTGATCGATGGATCATTC+AGG | - | chr2.3:63569945-63569964 | None:intergenic | 45.0% | |
| TCTGCAGGACATCCTCAAAT+AGG | - | chr2.3:63570275-63570294 | None:intergenic | 45.0% | |
| TGAGGATAGGAAAGCTTCTC+TGG | - | chr2.3:63570595-63570614 | None:intergenic | 45.0% | |
| TGCAGAGTTGGGGATGAATT+TGG | + | chr2.3:63570289-63570308 | MS.gene66818:intron | 45.0% | |
| TGGCCGGAGAAAATAAGAGT+AGG | + | chr2.3:63571450-63571469 | MS.gene66818:intron | 45.0% | |
| TGGGCACCTACATTTAAGTG+GGG | + | chr2.3:63570532-63570551 | MS.gene66818:CDS | 45.0% | |
| TGTGTACCTTGTCTGATCGA+TGG | - | chr2.3:63569955-63569974 | None:intergenic | 45.0% | |
| TTACGCTTTGCTTGCACTGA+AGG | - | chr2.3:63570985-63571004 | None:intergenic | 45.0% | |
| ! | CAACCCTAGTTTGTCTCTCA+TGG | + | chr2.3:63569895-63569914 | MS.gene66818:intron | 45.0% |
| !! | GAGAGTGTCCTACAAAGTAG+AGG | - | chr2.3:63569512-63569531 | None:intergenic | 45.0% |
| AACGTTGCAATGGCAGGAAC+TGG | + | chr2.3:63571627-63571646 | MS.gene66818:CDS | 50.0% | |
| ACCGCAATTTGCGTGACAGT+TGG | - | chr2.3:63571659-63571678 | None:intergenic | 50.0% | |
| GACACAGCTGTTACAGCTAC+TGG | + | chr2.3:63570834-63570853 | MS.gene66818:intron | 50.0% | |
| GGATAGGAAAGCTTCTCTGG+TGG | - | chr2.3:63570592-63570611 | None:intergenic | 50.0% | |
| TGAGGATGTCCTGCAGAGTT+GGG | + | chr2.3:63570278-63570297 | MS.gene66818:intron | 50.0% | |
| TTGAGGATGTCCTGCAGAGT+TGG | + | chr2.3:63570277-63570296 | MS.gene66818:intron | 50.0% | |
| !! | AGTTTCCCATTTTTGGGCCC+GGG | - | chr2.3:63571797-63571816 | None:intergenic | 50.0% |
| !! | GAGTTTCCCATTTTTGGGCC+CGG | - | chr2.3:63571798-63571817 | None:intergenic | 50.0% |
| !! | GCATTCTGGAATCATCCAGC+TGG | + | chr2.3:63569051-63569070 | MS.gene66818:CDS | 50.0% |
| !! | TATGTTGGTTTGGCCCTTCC+CGG | + | chr2.3:63571776-63571795 | MS.gene66818:intron | 50.0% |
| GAGGATGTCCTGCAGAGTTG+GGG | + | chr2.3:63570279-63570298 | MS.gene66818:intron | 55.0% | |
| GCTCAATCGCCTCGCATACA+AGG | - | chr2.3:63569648-63569667 | None:intergenic | 55.0% | |
| GCTGTGAACGTTGCAATGGC+AGG | + | chr2.3:63571621-63571640 | MS.gene66818:CDS | 55.0% | |
| !! | ATGTTGGTTTGGCCCTTCCC+GGG | + | chr2.3:63571777-63571796 | MS.gene66818:intron | 55.0% |
| !!! | TCACTGGTTTTGGGACCAGC+TGG | - | chr2.3:63569069-63569088 | None:intergenic | 55.0% |
| CCCTTCCCGGGCCCAAAAAT+GGG | + | chr2.3:63571789-63571808 | MS.gene66818:intron | 60.0% | |
| !! | CCCATTTTTGGGCCCGGGAA+GGG | - | chr2.3:63571792-63571811 | None:intergenic | 60.0% |
| !! | TCCCATTTTTGGGCCCGGGA+AGG | - | chr2.3:63571793-63571812 | None:intergenic | 60.0% |
| GCCCTTCCCGGGCCCAAAAA+TGG | + | chr2.3:63571788-63571807 | MS.gene66818:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 63569030 | 63572119 | 63569030 | ID=MS.gene66818 |
| chr2.3 | mRNA | 63569030 | 63572119 | 63569030 | ID=MS.gene66818.t1;Parent=MS.gene66818 |
| chr2.3 | exon | 63569030 | 63569084 | 63569030 | ID=MS.gene66818.t1.exon1;Parent=MS.gene66818.t1 |
| chr2.3 | CDS | 63569030 | 63569084 | 63569030 | ID=cds.MS.gene66818.t1;Parent=MS.gene66818.t1 |
| chr2.3 | exon | 63570524 | 63570622 | 63570524 | ID=MS.gene66818.t1.exon2;Parent=MS.gene66818.t1 |
| chr2.3 | CDS | 63570524 | 63570622 | 63570524 | ID=cds.MS.gene66818.t1;Parent=MS.gene66818.t1 |
| chr2.3 | exon | 63570841 | 63570893 | 63570841 | ID=MS.gene66818.t1.exon3;Parent=MS.gene66818.t1 |
| chr2.3 | CDS | 63570841 | 63570893 | 63570841 | ID=cds.MS.gene66818.t1;Parent=MS.gene66818.t1 |
| chr2.3 | exon | 63571603 | 63571676 | 63571603 | ID=MS.gene66818.t1.exon4;Parent=MS.gene66818.t1 |
| chr2.3 | CDS | 63571603 | 63571676 | 63571603 | ID=cds.MS.gene66818.t1;Parent=MS.gene66818.t1 |
| chr2.3 | exon | 63572080 | 63572119 | 63572080 | ID=MS.gene66818.t1.exon5;Parent=MS.gene66818.t1 |
| chr2.3 | CDS | 63572080 | 63572119 | 63572080 | ID=cds.MS.gene66818.t1;Parent=MS.gene66818.t1 |
| Gene Sequence |
| Protein sequence |
