Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69314.t1 | XP_013457966.1 | 98.7 | 478 | 6 | 0 | 1 | 478 | 1 | 478 | 3.60E-270 | 940.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69314.t1 | Q96558 | 77.2 | 473 | 106 | 2 | 4 | 476 | 3 | 473 | 4.8e-215 | 748.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69314.t1 | A0A072UQP6 | 98.7 | 478 | 6 | 0 | 1 | 478 | 1 | 478 | 2.6e-270 | 940.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene69314 | 0.832811 | 7.64E-56 | -1.69E-46 |
| MS.gene04917 | MS.gene69314 | 0.831537 | 1.58E-55 | -1.69E-46 |
| MS.gene049297 | MS.gene69314 | 0.808233 | 3.43E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene69314 | 0.818875 | 1.56E-52 | -1.69E-46 |
| MS.gene049382 | MS.gene69314 | 0.813433 | 2.57E-51 | -1.69E-46 |
| MS.gene049424 | MS.gene69314 | 0.810119 | 1.35E-50 | -1.69E-46 |
| MS.gene049438 | MS.gene69314 | 0.802891 | 4.52E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene69314 | 0.802017 | 6.85E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene69314 | 0.814855 | 1.25E-51 | -1.69E-46 |
| MS.gene04984 | MS.gene69314 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene69314 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene69314 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene69314 | 0.815748 | 7.89E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene69314 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene69314 | -0.82874 | 7.60E-55 | -1.69E-46 |
| MS.gene050762 | MS.gene69314 | 0.802469 | 5.53E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene69314 | 0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene69314 | 0.839175 | 1.85E-57 | -1.69E-46 |
| MS.gene051243 | MS.gene69314 | 0.809899 | 1.51E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene69314 | 0.821452 | 4.01E-53 | -1.69E-46 |
| MS.gene051535 | MS.gene69314 | 0.818851 | 1.58E-52 | -1.69E-46 |
| MS.gene051662 | MS.gene69314 | 0.835811 | 1.35E-56 | -1.69E-46 |
| MS.gene051663 | MS.gene69314 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene69314 | 0.812137 | 4.93E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene69314 | 0.813801 | 2.13E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene69314 | 0.803895 | 2.80E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene69314 | 0.843797 | 1.12E-58 | -1.69E-46 |
| MS.gene052309 | MS.gene69314 | -0.83434 | 3.17E-56 | -1.69E-46 |
| MS.gene052376 | MS.gene69314 | 0.834682 | 2.60E-56 | -1.69E-46 |
| MS.gene052856 | MS.gene69314 | 0.807724 | 4.39E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene69314 | 0.807281 | 5.46E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene69314 | 0.865491 | 5.68E-65 | -1.69E-46 |
| MS.gene053559 | MS.gene69314 | 0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene053630 | MS.gene69314 | 0.818799 | 1.62E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene69314 | 0.816144 | 6.43E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene69314 | 0.811759 | 5.96E-51 | -1.69E-46 |
| MS.gene054537 | MS.gene69314 | 0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene69314 | 0.86203 | 6.76E-64 | -1.69E-46 |
| MS.gene054942 | MS.gene69314 | 0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene055174 | MS.gene69314 | 0.80117 | 1.02E-48 | -1.69E-46 |
| MS.gene055441 | MS.gene69314 | 0.834563 | 2.79E-56 | -1.69E-46 |
| MS.gene056069 | MS.gene69314 | -0.826585 | 2.50E-54 | -1.69E-46 |
| MS.gene056760 | MS.gene69314 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene69314 | 0.80425 | 2.36E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene69314 | 0.825346 | 4.93E-54 | -1.69E-46 |
| MS.gene057234 | MS.gene69314 | 0.811217 | 7.82E-51 | -1.69E-46 |
| MS.gene057451 | MS.gene69314 | -0.81559 | 8.55E-52 | -1.69E-46 |
| MS.gene057452 | MS.gene69314 | -0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene69314 | 0.813648 | 2.30E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene69314 | 0.815234 | 1.03E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene69314 | 0.808797 | 2.60E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene69314 | 0.810481 | 1.13E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene69314 | 0.800258 | 1.57E-48 | -1.69E-46 |
| MS.gene058399 | MS.gene69314 | 0.810538 | 1.10E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene69314 | 0.815439 | 9.24E-52 | -1.69E-46 |
| MS.gene058661 | MS.gene69314 | -0.849413 | 3.29E-60 | -1.69E-46 |
| MS.gene058749 | MS.gene69314 | 0.818333 | 2.07E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene69314 | -0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene69314 | 0.800792 | 1.22E-48 | -1.69E-46 |
| MS.gene059899 | MS.gene69314 | 0.852047 | 5.97E-61 | -1.69E-46 |
| MS.gene060084 | MS.gene69314 | 0.839977 | 1.15E-57 | -1.69E-46 |
| MS.gene060297 | MS.gene69314 | 0.830407 | 2.99E-55 | -1.69E-46 |
| MS.gene061113 | MS.gene69314 | 0.810299 | 1.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69314.t1 | MTR_4g109360 | 98.745 | 478 | 6 | 0 | 1 | 478 | 1 | 478 | 0.0 | 966 |
| MS.gene69314.t1 | MTR_7g012950 | 75.476 | 473 | 114 | 2 | 4 | 476 | 3 | 473 | 0.0 | 760 |
| MS.gene69314.t1 | MTR_5g043970 | 74.262 | 474 | 119 | 3 | 4 | 476 | 3 | 474 | 0.0 | 738 |
| MS.gene69314.t1 | MTR_4g082990 | 72.516 | 473 | 128 | 2 | 4 | 476 | 3 | 473 | 0.0 | 722 |
| MS.gene69314.t1 | MTR_6g014890 | 53.398 | 103 | 46 | 1 | 13 | 115 | 16 | 116 | 4.34e-31 | 118 |
| MS.gene69314.t1 | MTR_6g014930 | 51.485 | 101 | 26 | 1 | 18 | 118 | 1 | 78 | 2.33e-23 | 94.0 |
| MS.gene69314.t1 | MTR_6g033430 | 65.753 | 73 | 25 | 0 | 65 | 137 | 1 | 73 | 3.10e-23 | 93.6 |
| MS.gene69314.t1 | MTR_6g014530 | 44.444 | 126 | 36 | 2 | 15 | 140 | 8 | 99 | 2.11e-22 | 92.4 |
| MS.gene69314.t1 | MTR_6g014840 | 49.412 | 85 | 34 | 1 | 4 | 88 | 3 | 78 | 8.97e-19 | 81.3 |
| MS.gene69314.t1 | MTR_6g014870 | 47.253 | 91 | 25 | 1 | 50 | 140 | 16 | 83 | 1.68e-17 | 79.7 |
| MS.gene69314.t1 | MTR_6g014850 | 46.000 | 100 | 27 | 2 | 4 | 103 | 3 | 75 | 1.33e-15 | 76.3 |
| MS.gene69314.t1 | MTR_6g014820 | 62.500 | 40 | 15 | 0 | 54 | 93 | 39 | 78 | 9.87e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69314.t1 | AT5G15490 | 75.899 | 473 | 112 | 2 | 4 | 476 | 3 | 473 | 0.0 | 755 |
| MS.gene69314.t1 | AT5G39320 | 74.841 | 473 | 117 | 2 | 4 | 476 | 3 | 473 | 0.0 | 752 |
| MS.gene69314.t1 | AT3G29360 | 75.476 | 473 | 114 | 2 | 4 | 476 | 3 | 473 | 0.0 | 752 |
| MS.gene69314.t1 | AT3G29360 | 75.476 | 473 | 114 | 2 | 4 | 476 | 3 | 473 | 0.0 | 752 |
| MS.gene69314.t1 | AT1G26570 | 73.529 | 476 | 119 | 4 | 4 | 476 | 3 | 474 | 0.0 | 733 |
| MS.gene69314.t1 | AT3G01010 | 69.677 | 155 | 44 | 1 | 321 | 475 | 1 | 152 | 1.09e-73 | 229 |
Find 88 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGCTATATATGCTAAT+TGG | 0.126937 | 8.2:+16499839 | MS.gene69314:CDS |
| TCCATGTTTAATACAGTTTC+AGG | 0.182968 | 8.2:+16500216 | MS.gene69314:CDS |
| GTTGATAAGTTGAAGAAAAT+TGG | 0.189472 | 8.2:+16500621 | MS.gene69314:CDS |
| TGAAAGAATATTTGATAGTA+TGG | 0.240417 | 8.2:+16500557 | MS.gene69314:CDS |
| AAGCCGCGGATTTAACTTAT+TGG | 0.242643 | 8.2:+16499557 | MS.gene69314:CDS |
| GTTCCTTCAGAAAGAAATTC+AGG | 0.248283 | 8.2:-16499730 | None:intergenic |
| ATTGTTGTATAACTTCTTCT+AGG | 0.283319 | 8.2:-16499420 | None:intergenic |
| CCTCCAATTAGAACCCTATC+AGG | 0.288063 | 8.2:-16499775 | None:intergenic |
| TTCTGAAGGAACTTCCATTC+AGG | 0.293072 | 8.2:+16499741 | MS.gene69314:CDS |
| CGATGTTTGCAAAGGCCTTT+TGG | 0.301385 | 8.2:+16500308 | MS.gene69314:CDS |
| GGATTTATTGTCTACTCAAT+TGG | 0.302160 | 8.2:+16500642 | MS.gene69314:CDS |
| CAATCCACCCACTGGTCTAT+TGG | 0.306306 | 8.2:-16500669 | None:intergenic |
| ATTACTTCAGCTGTTCTAAC+TGG | 0.314223 | 8.2:-16499649 | None:intergenic |
| TCGTTGAAGTGGCTAATTAT+TGG | 0.316062 | 8.2:+16500133 | MS.gene69314:CDS |
| GGTAAGAAGATTGCGGTTCT+AGG | 0.319279 | 8.2:+16500237 | MS.gene69314:CDS |
| TTCACATTAGTAAAACTCTT+TGG | 0.326095 | 8.2:-16500438 | None:intergenic |
| GAATCATTACTACCAATCTT+TGG | 0.333076 | 8.2:+16499875 | MS.gene69314:CDS |
| AGGATCTTCTAAATCCTGAT+AGG | 0.342974 | 8.2:+16499761 | MS.gene69314:CDS |
| AGCCGCGGATTTAACTTATT+GGG | 0.350232 | 8.2:+16499558 | MS.gene69314:CDS |
| TCTAGGCCAGGCTCATAGAT+AGG | 0.355935 | 8.2:-16499403 | None:intergenic |
| GTAAAGAAGATCTGTGGAAT+TGG | 0.362576 | 8.2:+16499262 | MS.gene69314:CDS |
| AATCCTGATAGGGTTCTAAT+TGG | 0.374154 | 8.2:+16499772 | MS.gene69314:CDS |
| GATTTATTGTCTACTCAATT+GGG | 0.378941 | 8.2:+16500643 | MS.gene69314:CDS |
| GAAAGCTATATATGCTAATT+GGG | 0.384261 | 8.2:+16499840 | MS.gene69314:CDS |
| TTAAATGCTAGTGTTGGTTT+TGG | 0.386227 | 8.2:+16500051 | MS.gene69314:CDS |
| TTCGATTGAAGGACATTTGA+GGG | 0.395001 | 8.2:-16499323 | None:intergenic |
| GTAGTAATGATTCTATCTTC+AGG | 0.422708 | 8.2:-16499865 | None:intergenic |
| TGTCTACGAATGAGATTCGT+TGG | 0.434062 | 8.2:+16500394 | MS.gene69314:CDS |
| TGACCATTCCATTGCTATTG+TGG | 0.443963 | 8.2:-16499687 | None:intergenic |
| TAAAGCTGACATGGCATTGA+TGG | 0.445252 | 8.2:-16499953 | None:intergenic |
| AATCCTGAATTTCTTTCTGA+AGG | 0.445398 | 8.2:+16499727 | MS.gene69314:CDS |
| GGAATTGGAGCTGGATATGT+AGG | 0.457875 | 8.2:+16499277 | MS.gene69314:CDS |
| ACAACAGCTACTTCGATTGA+AGG | 0.476978 | 8.2:-16499334 | None:intergenic |
| CCTGATAGGGTTCTAATTGG+AGG | 0.481879 | 8.2:+16499775 | MS.gene69314:CDS |
| TTTCTATATCGGTGCTGAAA+AGG | 0.484496 | 8.2:-16499459 | None:intergenic |
| AGGGCTATAACAGCCATTGT+TGG | 0.484929 | 8.2:-16499304 | None:intergenic |
| AAAACAAGTGGCCTTGGAGC+TGG | 0.485852 | 8.2:+16499532 | MS.gene69314:CDS |
| TGTATAACTTCTTCTAGGCC+AGG | 0.489194 | 8.2:-16499415 | None:intergenic |
| CTTCGATTGAAGGACATTTG+AGG | 0.491709 | 8.2:-16499324 | None:intergenic |
| TACTGGTGCAGATGTTTCAC+AGG | 0.492495 | 8.2:+16499984 | MS.gene69314:CDS |
| GAATTGGAGCTGGATATGTA+GGG | 0.494365 | 8.2:+16499278 | MS.gene69314:CDS |
| AAGATCTGTGGAATTGGAGC+TGG | 0.497235 | 8.2:+16499268 | MS.gene69314:CDS |
| AAATACTTAAATGCTAGTGT+TGG | 0.502217 | 8.2:+16500045 | MS.gene69314:CDS |
| GGAAATGATAAGAATCTTGA+AGG | 0.503798 | 8.2:+16499796 | MS.gene69314:CDS |
| AGTGGCTAATTATTGGAAAG+AGG | 0.505887 | 8.2:+16500140 | MS.gene69314:CDS |
| TCAGCTTTATGCGAGGCTAC+TGG | 0.508129 | 8.2:+16499967 | MS.gene69314:CDS |
| GTCTACGAATGAGATTCGTT+GGG | 0.515261 | 8.2:+16500395 | MS.gene69314:CDS |
| AGAAAGACACTAGTGATACT+AGG | 0.515266 | 8.2:+16500271 | MS.gene69314:CDS |
| GGATATGTGTTCTTACTGAA+TGG | 0.522703 | 8.2:+16500511 | MS.gene69314:CDS |
| GTTTATATATGTGAGAGTAA+TGG | 0.524039 | 8.2:+16500108 | MS.gene69314:CDS |
| CTCACTCTCGCATATCAGCT+TGG | 0.524776 | 8.2:+16499365 | MS.gene69314:CDS |
| GAGGCAACTAAAAGTGCTCA+TGG | 0.526914 | 8.2:+16500489 | MS.gene69314:CDS |
| AGAAAGCGTTATCTGCCAAA+AGG | 0.528206 | 8.2:-16500323 | None:intergenic |
| CCGCGGCTTTGCCAGCTCCA+AGG | 0.533146 | 8.2:-16499543 | None:intergenic |
| GGGTAAGTGAAGATCAGATT+CGG | 0.542590 | 8.2:+16500364 | MS.gene69314:CDS |
| GAGTTCAGCAGACCAAAGAT+TGG | 0.543599 | 8.2:-16499887 | None:intergenic |
| GGATCTTCTAAATCCTGATA+GGG | 0.544677 | 8.2:+16499762 | MS.gene69314:CDS |
| GATATGTGTTCTTACTGAAT+GGG | 0.547765 | 8.2:+16500512 | MS.gene69314:CDS |
| CTAGGCCAGGCTCATAGATA+GGG | 0.550472 | 8.2:-16499402 | None:intergenic |
| AGGATTTAGAAGATCCTGAA+TGG | 0.551761 | 8.2:-16499755 | None:intergenic |
| TGAATGATTACCAAAAGAGT+AGG | 0.551863 | 8.2:+16500172 | MS.gene69314:CDS |
| AAACTCCCTATCTATGAGCC+TGG | 0.560164 | 8.2:+16499397 | MS.gene69314:CDS |
| CCTTGGAGCTGGCAAAGCCG+CGG | 0.568019 | 8.2:+16499543 | MS.gene69314:CDS |
| ATTCTAGTCCACAATAGCAA+TGG | 0.571646 | 8.2:+16499679 | MS.gene69314:CDS |
| CCTTTGCAAACATCGATCGC+AGG | 0.572377 | 8.2:-16500300 | None:intergenic |
| TTATTGGAAAGAGGTAATCA+AGG | 0.575247 | 8.2:+16500149 | MS.gene69314:CDS |
| ACCTGAAACTGTATTAAACA+TGG | 0.593535 | 8.2:-16500217 | None:intergenic |
| TCGTTGGGACTGTTCAACTC+AGG | 0.597572 | 8.2:+16500410 | MS.gene69314:CDS |
| ATCTGATCTTCACTTACCCG+CGG | 0.597624 | 8.2:-16500360 | None:intergenic |
| AAAATGGTAAAGAAGATCTG+TGG | 0.600097 | 8.2:+16499256 | None:intergenic |
| CTTGAGCATTTACGACCCGC+GGG | 0.600202 | 8.2:+16500344 | MS.gene69314:CDS |
| AGTCCACAATAGCAATGGAA+TGG | 0.601626 | 8.2:+16499684 | MS.gene69314:CDS |
| TCTTGAGCATTTACGACCCG+CGG | 0.606832 | 8.2:+16500343 | MS.gene69314:CDS |
| AGTTTCAGGTAAGAAGATTG+CGG | 0.608152 | 8.2:+16500230 | MS.gene69314:CDS |
| TCTGATCTTCACTTACCCGC+GGG | 0.612177 | 8.2:-16500359 | None:intergenic |
| GAAGCTAGCAATCCACCCAC+TGG | 0.614421 | 8.2:-16500677 | None:intergenic |
| GAGTAATGGACTCGTTGAAG+TGG | 0.617744 | 8.2:+16500122 | MS.gene69314:CDS |
| TGGGAAACCAATAGACCAGT+GGG | 0.620842 | 8.2:+16500662 | MS.gene69314:CDS |
| CCTGCGATCGATGTTTGCAA+AGG | 0.622619 | 8.2:+16500300 | MS.gene69314:CDS |
| GAAGTTATACAACAATGTAG+AGG | 0.626309 | 8.2:+16499427 | MS.gene69314:CDS |
| TTCCCAATAAGTTAAATCCG+CGG | 0.649401 | 8.2:-16499560 | None:intergenic |
| AGGCAACTAAAAGTGCTCAT+GGG | 0.649550 | 8.2:+16500490 | MS.gene69314:CDS |
| AGCCTCGCATAAAGCTGACA+TGG | 0.651154 | 8.2:-16499962 | None:intergenic |
| TGCCATGTCAGCTTTATGCG+AGG | 0.659619 | 8.2:+16499960 | MS.gene69314:CDS |
| TTGGGAAACCAATAGACCAG+TGG | 0.672895 | 8.2:+16500661 | MS.gene69314:CDS |
| AATTGGAGCTGGATATGTAG+GGG | 0.692074 | 8.2:+16499279 | MS.gene69314:CDS |
| GAAACCAATAGACCAGTGGG+TGG | 0.708569 | 8.2:+16500665 | MS.gene69314:CDS |
| ATTGGAGCTGGATATGTAGG+GGG | 0.711652 | 8.2:+16499280 | MS.gene69314:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAACATGTTTTTCTATAT+CGG | - | chr8.2:16499473-16499492 | None:intergenic | 15.0% |
| !! | TCAAAAAGATATACTTAACT+TGG | + | chr8.2:16500086-16500105 | MS.gene69314:CDS | 20.0% |
| !! | TTAAGTAAAAACACTAAACT+TGG | + | chr8.2:16500018-16500037 | MS.gene69314:CDS | 20.0% |
| !!! | TGAAAGAATATTTGATAGTA+TGG | + | chr8.2:16500557-16500576 | MS.gene69314:CDS | 20.0% |
| ! | AAATACTTAAATGCTAGTGT+TGG | + | chr8.2:16500045-16500064 | MS.gene69314:CDS | 25.0% |
| ! | ATTGTTGTATAACTTCTTCT+AGG | - | chr8.2:16499423-16499442 | None:intergenic | 25.0% |
| ! | GAAAGCTATATATGCTAATT+GGG | + | chr8.2:16499840-16499859 | MS.gene69314:CDS | 25.0% |
| ! | GATTTATTGTCTACTCAATT+GGG | + | chr8.2:16500643-16500662 | MS.gene69314:CDS | 25.0% |
| ! | GTTTATATATGTGAGAGTAA+TGG | + | chr8.2:16500108-16500127 | MS.gene69314:CDS | 25.0% |
| ! | TGAAAGCTATATATGCTAAT+TGG | + | chr8.2:16499839-16499858 | MS.gene69314:CDS | 25.0% |
| ! | TTCACATTAGTAAAACTCTT+TGG | - | chr8.2:16500441-16500460 | None:intergenic | 25.0% |
| !! | GTTGATAAGTTGAAGAAAAT+TGG | + | chr8.2:16500621-16500640 | MS.gene69314:CDS | 25.0% |
| !!! | TTTTGATGGTAGAAATGTTT+TGG | + | chr8.2:16500596-16500615 | MS.gene69314:CDS | 25.0% |
| AATCCTGAATTTCTTTCTGA+AGG | + | chr8.2:16499727-16499746 | MS.gene69314:CDS | 30.0% | |
| ACCTGAAACTGTATTAAACA+TGG | - | chr8.2:16500220-16500239 | None:intergenic | 30.0% | |
| GAAGTTATACAACAATGTAG+AGG | + | chr8.2:16499427-16499446 | MS.gene69314:CDS | 30.0% | |
| GAATCATTACTACCAATCTT+TGG | + | chr8.2:16499875-16499894 | MS.gene69314:CDS | 30.0% | |
| GATATGTGTTCTTACTGAAT+GGG | + | chr8.2:16500512-16500531 | MS.gene69314:CDS | 30.0% | |
| GGAAATGATAAGAATCTTGA+AGG | + | chr8.2:16499796-16499815 | MS.gene69314:CDS | 30.0% | |
| GGATTTATTGTCTACTCAAT+TGG | + | chr8.2:16500642-16500661 | MS.gene69314:CDS | 30.0% | |
| GTAGTAATGATTCTATCTTC+AGG | - | chr8.2:16499868-16499887 | None:intergenic | 30.0% | |
| TCCATGTTTAATACAGTTTC+AGG | + | chr8.2:16500216-16500235 | MS.gene69314:CDS | 30.0% | |
| TGAATGATTACCAAAAGAGT+AGG | + | chr8.2:16500172-16500191 | MS.gene69314:CDS | 30.0% | |
| TTATTGGAAAGAGGTAATCA+AGG | + | chr8.2:16500149-16500168 | MS.gene69314:CDS | 30.0% | |
| ! | GAGTTTTACTAATGTGAAAC+AGG | + | chr8.2:16500443-16500462 | MS.gene69314:CDS | 30.0% |
| ! | TGAAACAGGTTAGTGTTTTT+GGG | + | chr8.2:16500457-16500476 | MS.gene69314:CDS | 30.0% |
| ! | TTTTCACAAACCTACTCTTT+TGG | - | chr8.2:16500185-16500204 | None:intergenic | 30.0% |
| !!! | AAACCAGCATTTGTTTTTGA+TGG | + | chr8.2:16500582-16500601 | MS.gene69314:CDS | 30.0% |
| !!! | ATAATGCTTTTTTGGCTCAA+AGG | + | chr8.2:16499923-16499942 | MS.gene69314:CDS | 30.0% |
| !!! | GTTAGCTGATAATGCTTTTT+TGG | + | chr8.2:16499915-16499934 | MS.gene69314:CDS | 30.0% |
| !!! | TTAAATGCTAGTGTTGGTTT+TGG | + | chr8.2:16500051-16500070 | MS.gene69314:CDS | 30.0% |
| AACACACCAACAAAAACAAG+TGG | + | chr8.2:16499520-16499539 | MS.gene69314:CDS | 35.0% | |
| AGAAAGACACTAGTGATACT+AGG | + | chr8.2:16500271-16500290 | MS.gene69314:CDS | 35.0% | |
| AGGATCTTCTAAATCCTGAT+AGG | + | chr8.2:16499761-16499780 | MS.gene69314:CDS | 35.0% | |
| AGGATTTAGAAGATCCTGAA+TGG | - | chr8.2:16499758-16499777 | None:intergenic | 35.0% | |
| AGTGGCTAATTATTGGAAAG+AGG | + | chr8.2:16500140-16500159 | MS.gene69314:CDS | 35.0% | |
| ATTACTTCAGCTGTTCTAAC+TGG | - | chr8.2:16499652-16499671 | None:intergenic | 35.0% | |
| ATTCTAGTCCACAATAGCAA+TGG | + | chr8.2:16499679-16499698 | MS.gene69314:CDS | 35.0% | |
| CTACCATCAAAAACAAATGC+TGG | - | chr8.2:16500588-16500607 | None:intergenic | 35.0% | |
| GGATATGTGTTCTTACTGAA+TGG | + | chr8.2:16500511-16500530 | MS.gene69314:CDS | 35.0% | |
| GGATCTTCTAAATCCTGATA+GGG | + | chr8.2:16499762-16499781 | MS.gene69314:CDS | 35.0% | |
| GTAAAGAAGATCTGTGGAAT+TGG | + | chr8.2:16499262-16499281 | MS.gene69314:CDS | 35.0% | |
| GTTCCTTCAGAAAGAAATTC+AGG | - | chr8.2:16499733-16499752 | None:intergenic | 35.0% | |
| TCGTTGAAGTGGCTAATTAT+TGG | + | chr8.2:16500133-16500152 | MS.gene69314:CDS | 35.0% | |
| TTCCCAATAAGTTAAATCCG+CGG | - | chr8.2:16499563-16499582 | None:intergenic | 35.0% | |
| TTCGATTGAAGGACATTTGA+GGG | - | chr8.2:16499326-16499345 | None:intergenic | 35.0% | |
| ! | AATCCTGATAGGGTTCTAAT+TGG | + | chr8.2:16499772-16499791 | MS.gene69314:CDS | 35.0% |
| ! | AGTTTCAGGTAAGAAGATTG+CGG | + | chr8.2:16500230-16500249 | MS.gene69314:CDS | 35.0% |
| ! | GTGAAACAGGTTAGTGTTTT+TGG | + | chr8.2:16500456-16500475 | MS.gene69314:CDS | 35.0% |
| !! | GAAACAGGTTAGTGTTTTTG+GGG | + | chr8.2:16500458-16500477 | MS.gene69314:CDS | 35.0% |
| !! | TTTCTATATCGGTGCTGAAA+AGG | - | chr8.2:16499462-16499481 | None:intergenic | 35.0% |
| AATTGGAGCTGGATATGTAG+GGG | + | chr8.2:16499279-16499298 | MS.gene69314:CDS | 40.0% | |
| ACAACAGCTACTTCGATTGA+AGG | - | chr8.2:16499337-16499356 | None:intergenic | 40.0% | |
| AGTCCACAATAGCAATGGAA+TGG | + | chr8.2:16499684-16499703 | MS.gene69314:CDS | 40.0% | |
| CTTCGATTGAAGGACATTTG+AGG | - | chr8.2:16499327-16499346 | None:intergenic | 40.0% | |
| GAATTGGAGCTGGATATGTA+GGG | + | chr8.2:16499278-16499297 | MS.gene69314:CDS | 40.0% | |
| GGGTAAGTGAAGATCAGATT+CGG | + | chr8.2:16500364-16500383 | MS.gene69314:CDS | 40.0% | |
| GTCTACGAATGAGATTCGTT+GGG | + | chr8.2:16500395-16500414 | MS.gene69314:CDS | 40.0% | |
| TGTATAACTTCTTCTAGGCC+AGG | - | chr8.2:16499418-16499437 | None:intergenic | 40.0% | |
| TGTCTACGAATGAGATTCGT+TGG | + | chr8.2:16500394-16500413 | MS.gene69314:CDS | 40.0% | |
| ! | AAGCCGCGGATTTAACTTAT+TGG | + | chr8.2:16499557-16499576 | MS.gene69314:CDS | 40.0% |
| ! | AGCCGCGGATTTAACTTATT+GGG | + | chr8.2:16499558-16499577 | MS.gene69314:CDS | 40.0% |
| ! | TAAAGCTGACATGGCATTGA+TGG | - | chr8.2:16499956-16499975 | None:intergenic | 40.0% |
| ! | TGACCATTCCATTGCTATTG+TGG | - | chr8.2:16499690-16499709 | None:intergenic | 40.0% |
| ! | TTCTGAAGGAACTTCCATTC+AGG | + | chr8.2:16499741-16499760 | MS.gene69314:CDS | 40.0% |
| !! | AGAAAGCGTTATCTGCCAAA+AGG | - | chr8.2:16500326-16500345 | None:intergenic | 40.0% |
| !! | AGGCAACTAAAAGTGCTCAT+GGG | + | chr8.2:16500490-16500509 | MS.gene69314:CDS | 40.0% |
| !!! | AATGCTAGTGTTGGTTTTGG+TGG | + | chr8.2:16500054-16500073 | MS.gene69314:CDS | 40.0% |
| !!! | TGTTTTTGGGGATGTTTACG+AGG | + | chr8.2:16500470-16500489 | MS.gene69314:CDS | 40.0% |
| AAACTCCCTATCTATGAGCC+TGG | + | chr8.2:16499397-16499416 | MS.gene69314:CDS | 45.0% | |
| AAGATCTGTGGAATTGGAGC+TGG | + | chr8.2:16499268-16499287 | MS.gene69314:CDS | 45.0% | |
| AGGGCTATAACAGCCATTGT+TGG | - | chr8.2:16499307-16499326 | None:intergenic | 45.0% | |
| ATATGTAGGGGGTCCAACAA+TGG | + | chr8.2:16499291-16499310 | MS.gene69314:CDS | 45.0% | |
| ATCTGATCTTCACTTACCCG+CGG | - | chr8.2:16500363-16500382 | None:intergenic | 45.0% | |
| ATTGGAGCTGGATATGTAGG+GGG | + | chr8.2:16499280-16499299 | MS.gene69314:CDS | 45.0% | |
| CCAACAAAAACAAGTGGCCT+TGG | + | chr8.2:16499526-16499545 | MS.gene69314:CDS | 45.0% | |
| CCTCCAATTAGAACCCTATC+AGG | - | chr8.2:16499778-16499797 | None:intergenic | 45.0% | |
| GAGTTCAGCAGACCAAAGAT+TGG | - | chr8.2:16499890-16499909 | None:intergenic | 45.0% | |
| GGAATTGGAGCTGGATATGT+AGG | + | chr8.2:16499277-16499296 | MS.gene69314:CDS | 45.0% | |
| GGTAAGAAGATTGCGGTTCT+AGG | + | chr8.2:16500237-16500256 | MS.gene69314:CDS | 45.0% | |
| TACTGGTGCAGATGTTTCAC+AGG | + | chr8.2:16499984-16500003 | MS.gene69314:CDS | 45.0% | |
| TGGGAAACCAATAGACCAGT+GGG | + | chr8.2:16500662-16500681 | MS.gene69314:CDS | 45.0% | |
| TTGGGAAACCAATAGACCAG+TGG | + | chr8.2:16500661-16500680 | MS.gene69314:CDS | 45.0% | |
| ! | CCTGATAGGGTTCTAATTGG+AGG | + | chr8.2:16499775-16499794 | MS.gene69314:CDS | 45.0% |
| ! | CGATGTTTGCAAAGGCCTTT+TGG | + | chr8.2:16500308-16500327 | MS.gene69314:CDS | 45.0% |
| !! | GAGGCAACTAAAAGTGCTCA+TGG | + | chr8.2:16500489-16500508 | MS.gene69314:CDS | 45.0% |
| !! | GAGTAATGGACTCGTTGAAG+TGG | + | chr8.2:16500122-16500141 | MS.gene69314:CDS | 45.0% |
| !!! | CCAAGGCCACTTGTTTTTGT+TGG | - | chr8.2:16499529-16499548 | None:intergenic | 45.0% |
| AGCCTCGCATAAAGCTGACA+TGG | - | chr8.2:16499965-16499984 | None:intergenic | 50.0% | |
| CCTGCGATCGATGTTTGCAA+AGG | + | chr8.2:16500300-16500319 | MS.gene69314:CDS | 50.0% | |
| CCTTTGCAAACATCGATCGC+AGG | - | chr8.2:16500303-16500322 | None:intergenic | 50.0% | |
| CTAGGCCAGGCTCATAGATA+GGG | - | chr8.2:16499405-16499424 | None:intergenic | 50.0% | |
| CTCACTCTCGCATATCAGCT+TGG | + | chr8.2:16499365-16499384 | MS.gene69314:CDS | 50.0% | |
| GAAACCAATAGACCAGTGGG+TGG | + | chr8.2:16500665-16500684 | MS.gene69314:CDS | 50.0% | |
| TCGTTGGGACTGTTCAACTC+AGG | + | chr8.2:16500410-16500429 | MS.gene69314:CDS | 50.0% | |
| TCTAGGCCAGGCTCATAGAT+AGG | - | chr8.2:16499406-16499425 | None:intergenic | 50.0% | |
| TCTGATCTTCACTTACCCGC+GGG | - | chr8.2:16500362-16500381 | None:intergenic | 50.0% | |
| TCTTGAGCATTTACGACCCG+CGG | + | chr8.2:16500343-16500362 | MS.gene69314:CDS | 50.0% | |
| ! | AAAACAAGTGGCCTTGGAGC+TGG | + | chr8.2:16499532-16499551 | MS.gene69314:CDS | 50.0% |
| ! | CAATCCACCCACTGGTCTAT+TGG | - | chr8.2:16500672-16500691 | None:intergenic | 50.0% |
| ! | TCAGCTTTATGCGAGGCTAC+TGG | + | chr8.2:16499967-16499986 | MS.gene69314:CDS | 50.0% |
| ! | TGCCATGTCAGCTTTATGCG+AGG | + | chr8.2:16499960-16499979 | MS.gene69314:CDS | 50.0% |
| CTTGAGCATTTACGACCCGC+GGG | + | chr8.2:16500344-16500363 | MS.gene69314:CDS | 55.0% | |
| CCTTGGAGCTGGCAAAGCCG+CGG | + | chr8.2:16499543-16499562 | MS.gene69314:CDS | 65.0% | |
| CCGCGGCTTTGCCAGCTCCA+AGG | - | chr8.2:16499546-16499565 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 16499259 | 16500695 | 16499259 | ID=MS.gene69314 |
| chr8.2 | mRNA | 16499259 | 16500695 | 16499259 | ID=MS.gene69314.t1;Parent=MS.gene69314 |
| chr8.2 | exon | 16499259 | 16500695 | 16499259 | ID=MS.gene69314.t1.exon1;Parent=MS.gene69314.t1 |
| chr8.2 | CDS | 16499259 | 16500695 | 16499259 | ID=cds.MS.gene69314.t1;Parent=MS.gene69314.t1 |
| Gene Sequence |
| Protein sequence |
