Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72131.t1 | XP_024627861.1 | 91.3 | 584 | 36 | 3 | 1 | 579 | 1 | 574 | 9.00E-292 | 1012.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72131.t1 | A0A072TU63 | 90.9 | 584 | 36 | 3 | 1 | 579 | 1 | 572 | 2.7e-290 | 1006.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene72131 | 0.82212 | 2.81E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene72131 | 0.813961 | 1.96E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene72131 | 0.817242 | 3.65E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene72131 | 0.879163 | 1.56E-69 | -1.69E-46 |
| MS.gene049662 | MS.gene72131 | 0.875499 | 2.94E-68 | -1.69E-46 |
| MS.gene049758 | MS.gene72131 | 0.816105 | 6.56E-52 | -1.69E-46 |
| MS.gene049760 | MS.gene72131 | 0.814441 | 1.54E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene72131 | 0.864623 | 1.06E-64 | -1.69E-46 |
| MS.gene050301 | MS.gene72131 | 0.811903 | 5.55E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene72131 | 0.859255 | 4.69E-63 | -1.69E-46 |
| MS.gene050432 | MS.gene72131 | 0.884935 | 1.25E-71 | -1.69E-46 |
| MS.gene050529 | MS.gene72131 | 0.809941 | 1.47E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene72131 | 0.840975 | 6.29E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene72131 | 0.818086 | 2.35E-52 | -1.69E-46 |
| MS.gene051877 | MS.gene72131 | 0.830949 | 2.20E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene72131 | 0.836473 | 9.17E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene72131 | 0.827078 | 1.91E-54 | -1.69E-46 |
| MS.gene052287 | MS.gene72131 | 0.805008 | 1.64E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene72131 | 0.807663 | 4.53E-50 | -1.69E-46 |
| MS.gene052326 | MS.gene72131 | 0.811474 | 6.88E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene72131 | 0.807863 | 4.11E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene72131 | 0.831175 | 1.94E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene72131 | 0.822774 | 1.98E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene72131 | 0.810749 | 9.87E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene72131 | 0.8347 | 2.58E-56 | -1.69E-46 |
| MS.gene053322 | MS.gene72131 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene72131 | 0.831951 | 1.25E-55 | -1.69E-46 |
| MS.gene054376 | MS.gene72131 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene72131 | 0.828557 | 8.42E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene72131 | 0.807593 | 4.69E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene72131 | 0.80531 | 1.42E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene72131 | 0.808 | 3.84E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene72131 | 0.849701 | 2.73E-60 | -1.69E-46 |
| MS.gene055254 | MS.gene72131 | 0.813849 | 2.08E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene72131 | 0.884444 | 1.91E-71 | -1.69E-46 |
| MS.gene055390 | MS.gene72131 | 0.806337 | 8.64E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene72131 | 0.819919 | 9.02E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene72131 | 0.834572 | 2.77E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene72131 | 0.804431 | 2.17E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene72131 | 0.842372 | 2.69E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene72131 | 0.800948 | 1.13E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene72131 | 0.812607 | 3.89E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene72131 | 0.80423 | 2.39E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene72131 | 0.821614 | 3.68E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene72131 | 0.843619 | 1.25E-58 | -1.69E-46 |
| MS.gene057123 | MS.gene72131 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene057129 | MS.gene72131 | 0.809938 | 1.48E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene72131 | 0.820646 | 6.15E-53 | -1.69E-46 |
| MS.gene057295 | MS.gene72131 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene72131 | 0.811234 | 7.75E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene72131 | 0.80744 | 5.05E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene72131 | 0.80275 | 4.84E-49 | -1.69E-46 |
| MS.gene057845 | MS.gene72131 | 0.801012 | 1.10E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene72131 | 0.823518 | 1.33E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene72131 | 0.804104 | 2.54E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene72131 | 0.828395 | 9.20E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene72131 | 0.866506 | 2.71E-65 | -1.69E-46 |
| MS.gene058928 | MS.gene72131 | 0.819258 | 1.28E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene72131 | 0.822636 | 2.13E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene72131 | 0.800263 | 1.56E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene72131 | 0.814654 | 1.38E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene72131 | 0.813122 | 3.00E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene72131 | 0.847653 | 1.01E-59 | -1.69E-46 |
| MS.gene059692 | MS.gene72131 | 0.850622 | 1.51E-60 | -1.69E-46 |
| MS.gene059695 | MS.gene72131 | 0.846568 | 2.00E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene72131 | 0.809857 | 1.54E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene72131 | 0.806151 | 9.45E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene72131 | 0.862365 | 5.34E-64 | -1.69E-46 |
| MS.gene060403 | MS.gene72131 | 0.809552 | 1.79E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene72131 | 0.847731 | 9.60E-60 | -1.69E-46 |
| MS.gene061041 | MS.gene72131 | 0.816572 | 5.16E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene72131 | 0.848595 | 5.54E-60 | -1.69E-46 |
| MS.gene061051 | MS.gene72131 | -0.824703 | 6.99E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72131.t1 | MTR_8g098335 | 90.925 | 584 | 36 | 3 | 1 | 579 | 1 | 572 | 0.0 | 1033 |
| MS.gene72131.t1 | MTR_7g077740 | 30.000 | 160 | 106 | 3 | 426 | 579 | 753 | 912 | 1.99e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTAACATGGACATTAAT+TGG | 0.098262 | 4.2:+6449906 | None:intergenic |
| ACAAGCTGTTGTAATGTTAT+TGG | 0.222383 | 4.2:+6448981 | None:intergenic |
| ACAACACATGCTTGGAAGTT+TGG | 0.253601 | 4.2:+6449068 | None:intergenic |
| AAGCACATCTGAACCAATTC+TGG | 0.268014 | 4.2:+6451282 | None:intergenic |
| TCCTTTGATTTGTTGTTCAT+TGG | 0.284502 | 4.2:+6449311 | None:intergenic |
| TTTATCCAACTGCCTACTAT+TGG | 0.307894 | 4.2:+6451547 | None:intergenic |
| CCATCAATAAGTTTGATAAA+TGG | 0.309576 | 4.2:+6449231 | None:intergenic |
| ACTATAACCTCTTCTTCTTC+TGG | 0.312350 | 4.2:+6450520 | None:intergenic |
| AGACCTTATAACATCCTCTT+TGG | 0.324442 | 4.2:-6449336 | MS.gene72131:CDS |
| CCATTTATCAAACTTATTGA+TGG | 0.332391 | 4.2:-6449231 | MS.gene72131:CDS |
| GAATGATCGGATAGCAGATT+TGG | 0.343186 | 4.2:-6450477 | MS.gene72131:CDS |
| TTTGATAAATGGCTCTTCAT+AGG | 0.348408 | 4.2:+6449242 | None:intergenic |
| TTCCAAGTCCTGCGAACTGC+TGG | 0.360062 | 4.2:+6449974 | None:intergenic |
| TACTAACATGGACATTAATT+GGG | 0.364399 | 4.2:+6449907 | None:intergenic |
| TCACCAAATGCAAAATTTGA+AGG | 0.381999 | 4.2:+6450083 | None:intergenic |
| TAATCTTCGTGAGGCTCATT+CGG | 0.396050 | 4.2:-6451585 | MS.gene72131:CDS |
| TCCCAGCAGTTCGCAGGACT+TGG | 0.403469 | 4.2:-6449976 | MS.gene72131:CDS |
| AAATGTGAATGGCGAATGTT+TGG | 0.414827 | 4.2:-6451614 | MS.gene72131:CDS |
| CATCTCTATGAAGTGCTTTG+AGG | 0.416519 | 4.2:+6449745 | None:intergenic |
| ATTACAACAGCTTGTTGAAA+GGG | 0.423151 | 4.2:-6448973 | MS.gene72131:CDS |
| TCAAAACTTACATCAACATC+AGG | 0.435516 | 4.2:+6451238 | None:intergenic |
| CAAGTGAAAGCAGAACAAAA+TGG | 0.438289 | 4.2:-6450257 | MS.gene72131:CDS |
| GTATATCATCGAATGTTTCA+TGG | 0.442276 | 4.2:-6449138 | MS.gene72131:CDS |
| TTTCACACCTTGGTCCTTCA+CGG | 0.447121 | 4.2:+6449797 | None:intergenic |
| GGCAATGGGAAATCCAGAAT+TGG | 0.447724 | 4.2:-6451295 | MS.gene72131:CDS |
| TCCATTCACTTCATCAAAAG+TGG | 0.447779 | 4.2:+6449199 | None:intergenic |
| GATCCAAAGAGGATGTTATA+AGG | 0.448481 | 4.2:+6449333 | None:intergenic |
| TTGCAACTCATTACTAAAAG+TGG | 0.454464 | 4.2:+6449665 | None:intergenic |
| TAAGACATGTCATGAGAGTA+AGG | 0.458092 | 4.2:-6450046 | MS.gene72131:CDS |
| ATGTGTTGTGAGGAAAGTTT+TGG | 0.462231 | 4.2:-6449054 | MS.gene72131:CDS |
| CTTTCCTCACAACACATGCT+TGG | 0.474299 | 4.2:+6449060 | None:intergenic |
| CTCAAAGCACTTCATAGAGA+TGG | 0.475720 | 4.2:-6449744 | MS.gene72131:CDS |
| GAACTGCTGGGAAATTTACT+TGG | 0.483258 | 4.2:+6449987 | None:intergenic |
| TCAAAGCACTTCATAGAGAT+GGG | 0.495966 | 4.2:-6449743 | MS.gene72131:CDS |
| GCAGTGCGGGACAACTGATT+CGG | 0.507517 | 4.2:-6450012 | MS.gene72131:CDS |
| CATTACAACAGCTTGTTGAA+AGG | 0.512663 | 4.2:-6448974 | MS.gene72131:CDS |
| CACTTTGCTGACACTAGCTC+TGG | 0.514081 | 4.2:-6450125 | MS.gene72131:CDS |
| TAAATTTCCCAGCAGTTCGC+AGG | 0.515356 | 4.2:-6449982 | MS.gene72131:CDS |
| ATAATGTGCATGCAAATTGT+CGG | 0.521272 | 4.2:+6449599 | None:intergenic |
| TGTTGTAATGTTATTGGTGA+TGG | 0.522358 | 4.2:+6448987 | None:intergenic |
| CAATTTCTTCTGCATCAACA+TGG | 0.524519 | 4.2:+6448919 | None:intergenic |
| ACTTGGCCAGACGTGAATCA+TGG | 0.524559 | 4.2:-6448950 | MS.gene72131:CDS |
| ATTCATCCATGATTCACGTC+TGG | 0.527004 | 4.2:+6448944 | None:intergenic |
| GGAGAAAAGAACAGCAGTGC+GGG | 0.535867 | 4.2:-6450025 | MS.gene72131:CDS |
| GGTTTCCAATAGTAGGCAGT+TGG | 0.538036 | 4.2:-6451552 | MS.gene72131:CDS |
| TCCAAGTCCTGCGAACTGCT+GGG | 0.538815 | 4.2:+6449975 | None:intergenic |
| ATGTTATAAGGTCTTCAAGA+TGG | 0.541014 | 4.2:+6449345 | None:intergenic |
| GGCTCATTCGGATGGAAGAT+CGG | 0.542039 | 4.2:-6451573 | MS.gene72131:CDS |
| CTTCGTGAGGCTCATTCGGA+TGG | 0.545723 | 4.2:-6451581 | MS.gene72131:CDS |
| GAGATAAAACTTTCACACCT+TGG | 0.547276 | 4.2:+6449787 | None:intergenic |
| GGACAGAAGATCTCCTCCTC+TGG | 0.548594 | 4.2:-6451645 | MS.gene72131:CDS |
| GAAGATCGGTTTCCAATAGT+AGG | 0.549773 | 4.2:-6451559 | MS.gene72131:CDS |
| AGTTCGCAGGACTTGGAAGA+TGG | 0.556294 | 4.2:-6449969 | MS.gene72131:CDS |
| TCCAATGAACAACAAATCAA+AGG | 0.561476 | 4.2:-6449312 | MS.gene72131:CDS |
| GCAAGATCCTAACTCTCTGT+TGG | 0.561889 | 4.2:-6450309 | MS.gene72131:CDS |
| AATGTTATTGGTGATGGATG+AGG | 0.570884 | 4.2:+6448993 | None:intergenic |
| GTATGCTCCAGAAGAAGAAG+AGG | 0.572437 | 4.2:-6450527 | MS.gene72131:CDS |
| TGGAATCTTTAATCTTCGTG+AGG | 0.576871 | 4.2:-6451594 | MS.gene72131:CDS |
| GTTGTTCATTGGATCCAAAG+AGG | 0.590616 | 4.2:+6449322 | None:intergenic |
| ACAGCTTGTTGAAAGGGACT+TGG | 0.590760 | 4.2:-6448967 | MS.gene72131:CDS |
| GCAAAATAAATTGACCGTGA+AGG | 0.591471 | 4.2:-6449811 | MS.gene72131:CDS |
| GTGTACGTGTGGAGAATGAT+CGG | 0.594868 | 4.2:-6450490 | MS.gene72131:CDS |
| GATGATATACTCATGCAAGA+TGG | 0.600077 | 4.2:+6449151 | None:intergenic |
| ATGTTATTGGTGATGGATGA+GGG | 0.600743 | 4.2:+6448994 | None:intergenic |
| AGAAGAAATTGCAATGGAGG+TGG | 0.605756 | 4.2:-6448907 | MS.gene72131:CDS |
| ACTAACATGGACATTAATTG+GGG | 0.615194 | 4.2:+6449908 | None:intergenic |
| ACTTCCAAGCATGTGTTGTG+AGG | 0.626643 | 4.2:-6449064 | MS.gene72131:CDS |
| CAAAACTTACATCAACATCA+GGG | 0.632189 | 4.2:+6451239 | None:intergenic |
| AAATTGACCGTGAAGGACCA+AGG | 0.639782 | 4.2:-6449804 | MS.gene72131:CDS |
| TAGTTGTAAGAGTGTACGTG+TGG | 0.641450 | 4.2:-6450501 | MS.gene72131:CDS |
| TGCAGAAGAAATTGCAATGG+AGG | 0.645966 | 4.2:-6448910 | MS.gene72131:CDS |
| TCATTACTAAAAGTGGCCAC+AGG | 0.656006 | 4.2:+6449672 | None:intergenic |
| GCACATTATGATATTCCTAG+AGG | 0.662018 | 4.2:-6449585 | MS.gene72131:intron |
| CAAAGCACTTCATAGAGATG+GGG | 0.670872 | 4.2:-6449742 | MS.gene72131:CDS |
| TGATGCAGAAGAAATTGCAA+TGG | 0.674423 | 4.2:-6448913 | MS.gene72131:CDS |
| AGGAGAAAAGAACAGCAGTG+CGG | 0.716182 | 4.2:-6450026 | MS.gene72131:CDS |
| CAGTTGGATAAACACACCAG+TGG | 0.724616 | 4.2:-6451536 | MS.gene72131:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACTAGTTATATAATG+AGG | + | chr4.2:6450940-6450959 | None:intergenic | 15.0% |
| !! | TATTATACTCATCTTAAATT+TGG | - | chr4.2:6449152-6449171 | MS.gene72131:CDS | 15.0% |
| !! | TGTTAATAAATATCTAGAAA+GGG | - | chr4.2:6449503-6449522 | MS.gene72131:intron | 15.0% |
| !!! | ATTTGTAACTATTTTTTTAG+AGG | + | chr4.2:6450341-6450360 | None:intergenic | 15.0% |
| !! | CTGTTAATAAATATCTAGAA+AGG | - | chr4.2:6449502-6449521 | MS.gene72131:intron | 20.0% |
| !! | GTTAATAAATATCTAGAAAG+GGG | - | chr4.2:6449504-6449523 | MS.gene72131:intron | 20.0% |
| !! | TACTAAATCATTCATGTAAT+GGG | + | chr4.2:6449916-6449935 | None:intergenic | 20.0% |
| !! | TACTATTGTATTATGGTTAA+TGG | + | chr4.2:6449608-6449627 | None:intergenic | 20.0% |
| !! | TATTGATCAATTCTTTAGTA+TGG | - | chr4.2:6451014-6451033 | MS.gene72131:intron | 20.0% |
| !! | TGGTAAAAATGTAAAAAAGT+TGG | - | chr4.2:6450546-6450565 | MS.gene72131:intron | 20.0% |
| !!! | ATAGCAAAGGTTTAAAATAT+CGG | + | chr4.2:6449772-6449791 | None:intergenic | 20.0% |
| !!! | GAATCAAATTTTGATTTTCT+GGG | - | chr4.2:6449120-6449139 | MS.gene72131:CDS | 20.0% |
| !!! | TAAATTATATGTTTTCTTGC+AGG | - | chr4.2:6451079-6451098 | MS.gene72131:intron | 20.0% |
| !!! | TGAATCAAATTTTGATTTTC+TGG | - | chr4.2:6449119-6449138 | MS.gene72131:CDS | 20.0% |
| !!! | TTCTTCTTTTTTAGCTTAAA+AGG | - | chr4.2:6448988-6449007 | MS.gene72131:CDS | 20.0% |
| !!! | TTTAAAATGTCATGTATAGT+TGG | - | chr4.2:6449850-6449869 | MS.gene72131:CDS | 20.0% |
| ! | AAGGCAATACTATTGTATTA+TGG | + | chr4.2:6449615-6449634 | None:intergenic | 25.0% |
| ! | ACAGCTTCAAATGATATTTA+TGG | + | chr4.2:6449092-6449111 | None:intergenic | 25.0% |
| ! | ACTAAATCATTCATGTAATG+GGG | + | chr4.2:6449915-6449934 | None:intergenic | 25.0% |
| ! | CAAATGATATTTATGGTTAC+TGG | + | chr4.2:6449085-6449104 | None:intergenic | 25.0% |
| ! | CAATACATAGATGATAAATG+AGG | + | chr4.2:6450999-6451018 | None:intergenic | 25.0% |
| ! | CCATCAATAAGTTTGATAAA+TGG | + | chr4.2:6451267-6451286 | None:intergenic | 25.0% |
| ! | CCATTTATCAAACTTATTGA+TGG | - | chr4.2:6451264-6451283 | MS.gene72131:CDS | 25.0% |
| ! | CTACTAAATCATTCATGTAA+TGG | + | chr4.2:6449917-6449936 | None:intergenic | 25.0% |
| ! | GGATTTCTTGATGAAAAATA+GGG | + | chr4.2:6451409-6451428 | None:intergenic | 25.0% |
| ! | TACTAACATGGACATTAATT+GGG | + | chr4.2:6450591-6450610 | None:intergenic | 25.0% |
| ! | TGGATTTCTTGATGAAAAAT+AGG | + | chr4.2:6451410-6451429 | None:intergenic | 25.0% |
| !!! | AAAACAGTAGTAGTTTTGAT+AGG | - | chr4.2:6450284-6450303 | MS.gene72131:CDS | 25.0% |
| !!! | AACTTTTTTCACTACTAACA+TGG | + | chr4.2:6450603-6450622 | None:intergenic | 25.0% |
| !!! | TTTGAAGTTTTTCAAGTTGA+AGG | - | chr4.2:6450621-6450640 | MS.gene72131:intron | 25.0% |
| !!! | TTTTTCAACAAAAACTCTCA+AGG | - | chr4.2:6450076-6450095 | MS.gene72131:CDS | 25.0% |
| AAAAATCAAAGATTTGCCTG+TGG | - | chr4.2:6450807-6450826 | MS.gene72131:intron | 30.0% | |
| ACAAGCTGTTGTAATGTTAT+TGG | + | chr4.2:6451517-6451536 | None:intergenic | 30.0% | |
| ACAGCATCCAAAAATTGATT+AGG | + | chr4.2:6450124-6450143 | None:intergenic | 30.0% | |
| ACTAACATGGACATTAATTG+GGG | + | chr4.2:6450590-6450609 | None:intergenic | 30.0% | |
| ACTACTTCAGTAACTTAGAA+AGG | + | chr4.2:6449560-6449579 | None:intergenic | 30.0% | |
| ATAATGTGCATGCAAATTGT+CGG | + | chr4.2:6450899-6450918 | None:intergenic | 30.0% | |
| ATGTTATAAGGTCTTCAAGA+TGG | + | chr4.2:6451153-6451172 | None:intergenic | 30.0% | |
| ATTCTTTAGTATGGTCTGAA+AGG | - | chr4.2:6451023-6451042 | MS.gene72131:intron | 30.0% | |
| CAAAACTTACATCAACATCA+GGG | + | chr4.2:6449259-6449278 | None:intergenic | 30.0% | |
| CTACTAACATGGACATTAAT+TGG | + | chr4.2:6450592-6450611 | None:intergenic | 30.0% | |
| GTATATCATCGAATGTTTCA+TGG | - | chr4.2:6451357-6451376 | MS.gene72131:intron | 30.0% | |
| TCAAAACTTACATCAACATC+AGG | + | chr4.2:6449260-6449279 | None:intergenic | 30.0% | |
| TCACCAAATGCAAAATTTGA+AGG | + | chr4.2:6450415-6450434 | None:intergenic | 30.0% | |
| TCCAATGAACAACAAATCAA+AGG | - | chr4.2:6451183-6451202 | MS.gene72131:intron | 30.0% | |
| TGGTTAACCAAAAATGTGAA+TGG | - | chr4.2:6448870-6448889 | MS.gene72131:CDS | 30.0% | |
| TGTTGTAATGTTATTGGTGA+TGG | + | chr4.2:6451511-6451530 | None:intergenic | 30.0% | |
| TTGCAACTCATTACTAAAAG+TGG | + | chr4.2:6450833-6450852 | None:intergenic | 30.0% | |
| TTTGATAAATGGCTCTTCAT+AGG | + | chr4.2:6451256-6451275 | None:intergenic | 30.0% | |
| TTTGTAGCAGCTATTGTAAA+AGG | - | chr4.2:6449306-6449325 | MS.gene72131:CDS | 30.0% | |
| ! | AAGCCTTCAAATTTTGCATT+TGG | - | chr4.2:6450409-6450428 | MS.gene72131:CDS | 30.0% |
| ! | ACTCATCTTAAATTTGGAAC+TGG | - | chr4.2:6449158-6449177 | MS.gene72131:CDS | 30.0% |
| ! | AGTAATGAGTTGCAAGTTTT+TGG | - | chr4.2:6450838-6450857 | MS.gene72131:intron | 30.0% |
| ! | ATTTAGTAGCATAGCATTGA+TGG | - | chr4.2:6449928-6449947 | MS.gene72131:CDS | 30.0% |
| ! | TTGTCAGCCTAATCAATTTT+TGG | - | chr4.2:6450114-6450133 | MS.gene72131:CDS | 30.0% |
| !! | ACAGGTTTTATATTCGAACA+AGG | - | chr4.2:6450144-6450163 | MS.gene72131:CDS | 30.0% |
| !! | ATGAAACTAGTTGATAGCAA+AGG | + | chr4.2:6449785-6449804 | None:intergenic | 30.0% |
| !! | ATTACAACAGCTTGTTGAAA+GGG | - | chr4.2:6451522-6451541 | MS.gene72131:intron | 30.0% |
| !! | TCCTTTGATTTGTTGTTCAT+TGG | + | chr4.2:6451187-6451206 | None:intergenic | 30.0% |
| !!! | GAAAAATGTTTTGGAAACAC+TGG | - | chr4.2:6451612-6451631 | MS.gene72131:CDS | 30.0% |
| !!! | TTAAACCCTTTTTAAAGCCT+CGG | - | chr4.2:6449380-6449399 | MS.gene72131:CDS | 30.0% |
| AAAAACTCTCAAGGCAAAGA+TGG | - | chr4.2:6450085-6450104 | MS.gene72131:CDS | 35.0% | |
| AAAAGAAGAACTCTTACCAC+TGG | + | chr4.2:6448978-6448997 | None:intergenic | 35.0% | |
| AAATGTGAATGGCGAATGTT+TGG | - | chr4.2:6448881-6448900 | MS.gene72131:CDS | 35.0% | |
| AATAGTATTGCCTTGCTTTG+AGG | - | chr4.2:6449621-6449640 | MS.gene72131:CDS | 35.0% | |
| ACTATAACCTCTTCTTCTTC+TGG | + | chr4.2:6449978-6449997 | None:intergenic | 35.0% | |
| AGACCTTATAACATCCTCTT+TGG | - | chr4.2:6451159-6451178 | MS.gene72131:intron | 35.0% | |
| AGATGGTACTGTCAAAAAGT+TGG | + | chr4.2:6451330-6451349 | None:intergenic | 35.0% | |
| AGGGTGAAAAATCACTATTC+TGG | + | chr4.2:6451390-6451409 | None:intergenic | 35.0% | |
| ATATAATGAGGCATACCTCT+AGG | + | chr4.2:6450928-6450947 | None:intergenic | 35.0% | |
| ATCTCATAAAAAGCAGCAGA+TGG | - | chr4.2:6450726-6450745 | MS.gene72131:intron | 35.0% | |
| CAAGTGAAAGCAGAACAAAA+TGG | - | chr4.2:6450238-6450257 | MS.gene72131:CDS | 35.0% | |
| CAATTTCTTCTGCATCAACA+TGG | + | chr4.2:6451579-6451598 | None:intergenic | 35.0% | |
| GAGATAAAACTTTCACACCT+TGG | + | chr4.2:6450711-6450730 | None:intergenic | 35.0% | |
| GATCCAAAGAGGATGTTATA+AGG | + | chr4.2:6451165-6451184 | None:intergenic | 35.0% | |
| GATGATATACTCATGCAAGA+TGG | + | chr4.2:6451347-6451366 | None:intergenic | 35.0% | |
| GCAAAATAAATTGACCGTGA+AGG | - | chr4.2:6450684-6450703 | MS.gene72131:intron | 35.0% | |
| GCACATTATGATATTCCTAG+AGG | - | chr4.2:6450910-6450929 | MS.gene72131:intron | 35.0% | |
| TAAGACATGTCATGAGAGTA+AGG | - | chr4.2:6450449-6450468 | MS.gene72131:CDS | 35.0% | |
| TAGACTTTCAGTGCATACAA+TGG | + | chr4.2:6449053-6449072 | None:intergenic | 35.0% | |
| TCATACATGCTTGTGATTTC+AGG | + | chr4.2:6449357-6449376 | None:intergenic | 35.0% | |
| TCCATTCACTTCATCAAAAG+TGG | + | chr4.2:6451299-6451318 | None:intergenic | 35.0% | |
| TGATGCAGAAGAAATTGCAA+TGG | - | chr4.2:6451582-6451601 | MS.gene72131:CDS | 35.0% | |
| TGGAATCTTTAATCTTCGTG+AGG | - | chr4.2:6448901-6448920 | MS.gene72131:CDS | 35.0% | |
| TTTATCCAACTGCCTACTAT+TGG | + | chr4.2:6448951-6448970 | None:intergenic | 35.0% | |
| ! | ACATTCGCCATTCACATTTT+TGG | + | chr4.2:6448880-6448899 | None:intergenic | 35.0% |
| ! | ATGTGTTGTGAGGAAAGTTT+TGG | - | chr4.2:6451441-6451460 | MS.gene72131:intron | 35.0% |
| ! | TCAAAGCACTTCATAGAGAT+GGG | - | chr4.2:6450752-6450771 | MS.gene72131:intron | 35.0% |
| ! | TGTTTTACCAACAGAGAGTT+AGG | + | chr4.2:6450196-6450215 | None:intergenic | 35.0% |
| !! | AATGTTATTGGTGATGGATG+AGG | + | chr4.2:6451505-6451524 | None:intergenic | 35.0% |
| !! | ATGTTATTGGTGATGGATGA+GGG | + | chr4.2:6451504-6451523 | None:intergenic | 35.0% |
| !! | CATTACAACAGCTTGTTGAA+AGG | - | chr4.2:6451521-6451540 | MS.gene72131:intron | 35.0% |
| !! | TCAATTTTTGGATGCTGTAC+AGG | - | chr4.2:6450126-6450145 | MS.gene72131:CDS | 35.0% |
| !! | TCCACTTTTGATGAAGTGAA+TGG | - | chr4.2:6451295-6451314 | MS.gene72131:CDS | 35.0% |
| !!! | TCACATTTTTGGTTAACCAG+AGG | + | chr4.2:6448869-6448888 | None:intergenic | 35.0% |
| !!! | TGTTTTGGAAACACTGGTTT+TGG | - | chr4.2:6451618-6451637 | MS.gene72131:CDS | 35.0% |
| AAGCACATCTGAACCAATTC+TGG | + | chr4.2:6449216-6449235 | None:intergenic | 40.0% | |
| ACAACACATGCTTGGAAGTT+TGG | + | chr4.2:6451430-6451449 | None:intergenic | 40.0% | |
| ACATAAAACTCGACATGACG+TGG | + | chr4.2:6449681-6449700 | None:intergenic | 40.0% | |
| AGAAAGGGGAAAGACTTTGA+AGG | - | chr4.2:6449518-6449537 | MS.gene72131:intron | 40.0% | |
| AGAAGAAATTGCAATGGAGG+TGG | - | chr4.2:6451588-6451607 | MS.gene72131:CDS | 40.0% | |
| ATCACTAGATCCTCAAAGCA+AGG | + | chr4.2:6449634-6449653 | None:intergenic | 40.0% | |
| ATCGGTCATAGTAACTGTTG+TGG | + | chr4.2:6449754-6449773 | None:intergenic | 40.0% | |
| ATTCATCCATGATTCACGTC+TGG | + | chr4.2:6451554-6451573 | None:intergenic | 40.0% | |
| GAACTGCTGGGAAATTTACT+TGG | + | chr4.2:6450511-6450530 | None:intergenic | 40.0% | |
| GAATGATCGGATAGCAGATT+TGG | - | chr4.2:6450018-6450037 | MS.gene72131:CDS | 40.0% | |
| GTTGTTCATTGGATCCAAAG+AGG | + | chr4.2:6451176-6451195 | None:intergenic | 40.0% | |
| TAATCTTCGTGAGGCTCATT+CGG | - | chr4.2:6448910-6448929 | MS.gene72131:CDS | 40.0% | |
| TCATTACTAAAAGTGGCCAC+AGG | + | chr4.2:6450826-6450845 | None:intergenic | 40.0% | |
| TGCAGAAGAAATTGCAATGG+AGG | - | chr4.2:6451585-6451604 | MS.gene72131:CDS | 40.0% | |
| TTGGCAAGATGCAGCAAAAA+TGG | - | chr4.2:6449869-6449888 | MS.gene72131:CDS | 40.0% | |
| ! | ATCATTCATGTAATGGGGTG+AGG | + | chr4.2:6449910-6449929 | None:intergenic | 40.0% |
| ! | CAAAGCACTTCATAGAGATG+GGG | - | chr4.2:6450753-6450772 | MS.gene72131:intron | 40.0% |
| ! | CATCTCTATGAAGTGCTTTG+AGG | + | chr4.2:6450753-6450772 | None:intergenic | 40.0% |
| ! | CTCAAAGCACTTCATAGAGA+TGG | - | chr4.2:6450751-6450770 | MS.gene72131:intron | 40.0% |
| ! | CTTTGAGGATCTAGTGATCA+AGG | - | chr4.2:6449636-6449655 | MS.gene72131:CDS | 40.0% |
| ! | GAAGATCGGTTTCCAATAGT+AGG | - | chr4.2:6448936-6448955 | MS.gene72131:CDS | 40.0% |
| ! | GGAGGTGGAGAAAAATGTTT+TGG | - | chr4.2:6451603-6451622 | MS.gene72131:CDS | 40.0% |
| ! | GTTTTCTTGCAGGAACAGAT+GGG | - | chr4.2:6451089-6451108 | MS.gene72131:intron | 40.0% |
| ! | TAGTTGTAAGAGTGTACGTG+TGG | - | chr4.2:6449994-6450013 | MS.gene72131:CDS | 40.0% |
| ! | TCATTCATGTAATGGGGTGA+GGG | + | chr4.2:6449909-6449928 | None:intergenic | 40.0% |
| ! | TGTTTTCTTGCAGGAACAGA+TGG | - | chr4.2:6451088-6451107 | MS.gene72131:intron | 40.0% |
| !! | ACTAGTCCGAGGCTTTAAAA+AGG | + | chr4.2:6449389-6449408 | None:intergenic | 40.0% |
| !! | CTAGTCCGAGGCTTTAAAAA+GGG | + | chr4.2:6449388-6449407 | None:intergenic | 40.0% |
| !!! | CATTTTTGGTTAACCAGAGG+AGG | + | chr4.2:6448866-6448885 | None:intergenic | 40.0% |
| !!! | GATGGAAGAATTTTGACTGC+AGG | - | chr4.2:6449946-6449965 | MS.gene72131:CDS | 40.0% |
| !!! | TTTTTAAAGCCTCGGACTAG+TGG | - | chr4.2:6449388-6449407 | MS.gene72131:CDS | 40.0% |
| AAATTGACCGTGAAGGACCA+AGG | - | chr4.2:6450691-6450710 | MS.gene72131:intron | 45.0% | |
| ACTTCCAAGCATGTGTTGTG+AGG | - | chr4.2:6451431-6451450 | MS.gene72131:intron | 45.0% | |
| AGGAGAAAAGAACAGCAGTG+CGG | - | chr4.2:6450469-6450488 | MS.gene72131:CDS | 45.0% | |
| CAGTTGGATAAACACACCAG+TGG | - | chr4.2:6448959-6448978 | MS.gene72131:CDS | 45.0% | |
| CTTTCCTCACAACACATGCT+TGG | + | chr4.2:6451438-6451457 | None:intergenic | 45.0% | |
| GCAAGATCCTAACTCTCTGT+TGG | - | chr4.2:6450186-6450205 | MS.gene72131:CDS | 45.0% | |
| GGCAATGGGAAATCCAGAAT+TGG | - | chr4.2:6449200-6449219 | MS.gene72131:CDS | 45.0% | |
| GGTTTCCAATAGTAGGCAGT+TGG | - | chr4.2:6448943-6448962 | MS.gene72131:CDS | 45.0% | |
| GTATGCTCCAGAAGAAGAAG+AGG | - | chr4.2:6449968-6449987 | MS.gene72131:CDS | 45.0% | |
| GTGTACGTGTGGAGAATGAT+CGG | - | chr4.2:6450005-6450024 | MS.gene72131:CDS | 45.0% | |
| TAAATTTCCCAGCAGTTCGC+AGG | - | chr4.2:6450513-6450532 | MS.gene72131:CDS | 45.0% | |
| TTACCAAAACCACTAGTCCG+AGG | + | chr4.2:6449400-6449419 | None:intergenic | 45.0% | |
| TTTCACACCTTGGTCCTTCA+CGG | + | chr4.2:6450701-6450720 | None:intergenic | 45.0% | |
| ! | CATTCATGTAATGGGGTGAG+GGG | + | chr4.2:6449908-6449927 | None:intergenic | 45.0% |
| ! | TTTTCCAAGCTGCAGGCAAT+GGG | - | chr4.2:6449186-6449205 | MS.gene72131:CDS | 45.0% |
| ! | TTTTTCCAAGCTGCAGGCAA+TGG | - | chr4.2:6449185-6449204 | MS.gene72131:CDS | 45.0% |
| !! | ACAGCTTGTTGAAAGGGACT+TGG | - | chr4.2:6451528-6451547 | MS.gene72131:intron | 45.0% |
| !!! | GGTGATTTTTTCCAAGCTGC+AGG | - | chr4.2:6449179-6449198 | MS.gene72131:CDS | 45.0% |
| ACTTGGCCAGACGTGAATCA+TGG | - | chr4.2:6451545-6451564 | MS.gene72131:CDS | 50.0% | |
| AGTTCGCAGGACTTGGAAGA+TGG | - | chr4.2:6450526-6450545 | MS.gene72131:CDS | 50.0% | |
| ATTTCCCATTGCCTGCAGCT+TGG | + | chr4.2:6449193-6449212 | None:intergenic | 50.0% | |
| CACTTTGCTGACACTAGCTC+TGG | - | chr4.2:6450370-6450389 | MS.gene72131:CDS | 50.0% | |
| GGAGAAAAGAACAGCAGTGC+GGG | - | chr4.2:6450470-6450489 | MS.gene72131:CDS | 50.0% | |
| GGCTCATTCGGATGGAAGAT+CGG | - | chr4.2:6448922-6448941 | MS.gene72131:CDS | 50.0% | |
| !!! | AAGCCTCGGACTAGTGGTTT+TGG | - | chr4.2:6449394-6449413 | MS.gene72131:CDS | 50.0% |
| ACATGACGTGGACCAAACCG+TGG | + | chr4.2:6449669-6449688 | None:intergenic | 55.0% | |
| CCTCAATCGTGGTCGTGTTG+CGG | + | chr4.2:6449712-6449731 | None:intergenic | 55.0% | |
| CTTCGTGAGGCTCATTCGGA+TGG | - | chr4.2:6448914-6448933 | MS.gene72131:CDS | 55.0% | |
| GCAGTGCGGGACAACTGATT+CGG | - | chr4.2:6450483-6450502 | MS.gene72131:CDS | 55.0% | |
| GGACAGAAGATCTCCTCCTC+TGG | - | chr4.2:6448850-6448869 | MS.gene72131:CDS | 55.0% | |
| GTGATCAAGGTCTGCGACCA+CGG | - | chr4.2:6449649-6449668 | MS.gene72131:CDS | 55.0% | |
| GTGGTCAAATGAGCCCGATG+CGG | + | chr4.2:6449735-6449754 | None:intergenic | 55.0% | |
| TCCAAGTCCTGCGAACTGCT+GGG | + | chr4.2:6450523-6450542 | None:intergenic | 55.0% | |
| TTCCAAGTCCTGCGAACTGC+TGG | + | chr4.2:6450524-6450543 | None:intergenic | 55.0% | |
| ! | ATGTAATGGGGTGAGGGGAG+TGG | + | chr4.2:6449903-6449922 | None:intergenic | 55.0% |
| ACCACGATTGAGGCCGCATC+GGG | - | chr4.2:6449719-6449738 | MS.gene72131:CDS | 60.0% | |
| CAAGGTCTGCGACCACGGTT+TGG | - | chr4.2:6449654-6449673 | MS.gene72131:CDS | 60.0% | |
| CCGCAACACGACCACGATTG+AGG | - | chr4.2:6449709-6449728 | MS.gene72131:CDS | 60.0% | |
| GACCACGATTGAGGCCGCAT+CGG | - | chr4.2:6449718-6449737 | MS.gene72131:CDS | 60.0% | |
| TCCCAGCAGTTCGCAGGACT+TGG | - | chr4.2:6450519-6450538 | MS.gene72131:CDS | 60.0% | |
| GCCCGATGCGGCCTCAATCG+TGG | + | chr4.2:6449723-6449742 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6448848 | 6451669 | 6448848 | ID=MS.gene72131 |
| chr4.2 | mRNA | 6448848 | 6451669 | 6448848 | ID=MS.gene72131.t1;Parent=MS.gene72131 |
| chr4.2 | exon | 6451537 | 6451669 | 6451537 | ID=MS.gene72131.t1.exon1;Parent=MS.gene72131.t1 |
| chr4.2 | CDS | 6451537 | 6451669 | 6451537 | ID=cds.MS.gene72131.t1;Parent=MS.gene72131.t1 |
| chr4.2 | exon | 6451249 | 6451322 | 6451249 | ID=MS.gene72131.t1.exon2;Parent=MS.gene72131.t1 |
| chr4.2 | CDS | 6451249 | 6451322 | 6451249 | ID=cds.MS.gene72131.t1;Parent=MS.gene72131.t1 |
| chr4.2 | exon | 6449586 | 6450549 | 6449586 | ID=MS.gene72131.t1.exon3;Parent=MS.gene72131.t1 |
| chr4.2 | CDS | 6449586 | 6450549 | 6449586 | ID=cds.MS.gene72131.t1;Parent=MS.gene72131.t1 |
| chr4.2 | exon | 6448848 | 6449416 | 6448848 | ID=MS.gene72131.t1.exon4;Parent=MS.gene72131.t1 |
| chr4.2 | CDS | 6448848 | 6449416 | 6448848 | ID=cds.MS.gene72131.t1;Parent=MS.gene72131.t1 |
| Gene Sequence |
| Protein sequence |
