Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73007.t1 | RHN52029.1 | 95.1 | 142 | 7 | 0 | 1 | 142 | 100 | 241 | 6.90E-68 | 266.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73007.t1 | Q93WL3 | 60.6 | 142 | 54 | 2 | 1 | 141 | 96 | 236 | 5.0e-43 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73007.t1 | A0A396HFE0 | 95.1 | 142 | 7 | 0 | 1 | 142 | 100 | 241 | 5.0e-68 | 266.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene73007 | 0.834664 | 2.63E-56 | -1.69E-46 |
| MS.gene049171 | MS.gene73007 | 0.829682 | 4.49E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene73007 | 0.82872 | 7.69E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene73007 | 0.832436 | 9.47E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene73007 | 0.807158 | 5.80E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene73007 | 0.841296 | 5.18E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene73007 | 0.84052 | 8.28E-58 | -1.69E-46 |
| MS.gene050333 | MS.gene73007 | 0.821577 | 3.75E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene73007 | 0.819967 | 8.79E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene73007 | 0.803716 | 3.05E-49 | -1.69E-46 |
| MS.gene050538 | MS.gene73007 | 0.803655 | 3.14E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene73007 | 0.806476 | 8.08E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene73007 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene73007 | 0.828794 | 7.37E-55 | -1.69E-46 |
| MS.gene051366 | MS.gene73007 | -0.805482 | 1.31E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene73007 | 0.83819 | 3.33E-57 | -1.69E-46 |
| MS.gene051694 | MS.gene73007 | 0.822577 | 2.20E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene73007 | 0.813554 | 2.41E-51 | -1.69E-46 |
| MS.gene052050 | MS.gene73007 | -0.809478 | 1.86E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene73007 | -0.819315 | 1.24E-52 | -1.69E-46 |
| MS.gene053285 | MS.gene73007 | 0.8016 | 8.34E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene73007 | 0.806554 | 7.78E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene73007 | -0.80264 | 5.10E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene73007 | 0.815457 | 9.16E-52 | -1.69E-46 |
| MS.gene053915 | MS.gene73007 | 0.809024 | 2.32E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene73007 | 0.812148 | 4.90E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene73007 | 0.802012 | 6.86E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene73007 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene73007 | 0.820894 | 5.39E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene73007 | 0.825766 | 3.92E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene73007 | 0.815005 | 1.15E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene73007 | 0.827432 | 1.57E-54 | -1.69E-46 |
| MS.gene056856 | MS.gene73007 | -0.806714 | 7.19E-50 | -1.69E-46 |
| MS.gene056903 | MS.gene73007 | 0.815678 | 8.17E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene73007 | 0.803652 | 3.15E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene73007 | 0.815415 | 9.35E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene73007 | 0.820133 | 8.06E-53 | -1.69E-46 |
| MS.gene058158 | MS.gene73007 | -0.834996 | 2.17E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene73007 | 0.811978 | 5.34E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene73007 | 0.822801 | 1.95E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene73007 | 0.820251 | 7.57E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene73007 | 0.832156 | 1.11E-55 | -1.69E-46 |
| MS.gene058838 | MS.gene73007 | 0.820927 | 5.30E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene73007 | 0.811857 | 5.68E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene73007 | 0.831484 | 1.63E-55 | -1.69E-46 |
| MS.gene05914 | MS.gene73007 | 0.805226 | 1.48E-49 | -1.69E-46 |
| MS.gene059526 | MS.gene73007 | -0.820386 | 7.05E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene73007 | 0.802938 | 4.42E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene73007 | 0.832706 | 8.11E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene73007 | 0.817052 | 4.03E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene73007 | 0.816803 | 4.58E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene73007 | 0.812491 | 4.13E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene73007 | 0.824925 | 6.20E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene73007 | 0.833904 | 4.08E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene73007 | 0.834287 | 3.27E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene73007 | 0.801751 | 7.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73007.t1 | MTR_6g461650 | 95.652 | 115 | 5 | 0 | 28 | 142 | 12 | 126 | 1.62e-75 | 221 |
| MS.gene73007.t1 | MTR_5g011550 | 53.968 | 126 | 57 | 1 | 1 | 125 | 96 | 221 | 2.25e-42 | 140 |
| MS.gene73007.t1 | MTR_5g011550 | 53.488 | 86 | 40 | 0 | 1 | 86 | 96 | 181 | 4.20e-26 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73007.t1 | AT4G25370 | 60.563 | 142 | 54 | 2 | 1 | 141 | 96 | 236 | 3.78e-57 | 178 |
| MS.gene73007.t1 | AT4G12060 | 59.124 | 137 | 54 | 2 | 1 | 135 | 104 | 240 | 3.99e-47 | 152 |
Find 34 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGTGACTCATTTACTTCT+TGG | 0.193512 | 6.3:-60963617 | MS.gene73007:CDS |
| CTCATTTACTTCTTGGAATT+TGG | 0.207345 | 6.3:-60963610 | MS.gene73007:CDS |
| TGCTGTTTCAGCAATTTCTT+TGG | 0.256036 | 6.3:+60963526 | None:intergenic |
| AGAGCTTCGGTTCCTACTTT+AGG | 0.268153 | 6.3:+60966183 | None:intergenic |
| CGAAAGGTCTTGTCTGCTTT+AGG | 0.302687 | 6.3:-60963566 | MS.gene73007:CDS |
| GCAAAATTCTTAAGAGCTAA+TGG | 0.310722 | 6.3:-60964878 | MS.gene73007:CDS |
| GGCATATGCAATGGCGGAGT+TGG | 0.395307 | 6.3:-60966226 | None:intergenic |
| AGGCTAGTGGTGATATTGAT+TGG | 0.457256 | 6.3:-60963193 | MS.gene73007:CDS |
| GAACAAACATTAGAGATACT+TGG | 0.494086 | 6.3:-60964833 | MS.gene73007:CDS |
| CACTTCATAAAGCCCTCGAT+TGG | 0.501232 | 6.3:-60964760 | MS.gene73007:CDS |
| AATCCCCATGAGAAGAGCTT+CGG | 0.510732 | 6.3:+60966170 | None:intergenic |
| GGAACCGAAGCTCTTCTCAT+GGG | 0.514916 | 6.3:-60966174 | MS.gene73007:CDS |
| TGAAGTGGTTCAGTCAAAGA+AGG | 0.516251 | 6.3:+60964776 | None:intergenic |
| AAACTTAAGTATCCTAAAGT+AGG | 0.518801 | 6.3:-60966195 | MS.gene73007:CDS |
| CAAAGAAGGTACCACAGGGC+TGG | 0.521979 | 6.3:+60964790 | None:intergenic |
| AATTTGGTCACAAGAAGAAT+CGG | 0.524470 | 6.3:-60963594 | MS.gene73007:CDS |
| CTTAATGAGACATCAAAGTC+AGG | 0.528570 | 6.3:-60964734 | MS.gene73007:intron |
| ACTTCATAAAGCCCTCGATT+GGG | 0.536661 | 6.3:-60964759 | MS.gene73007:CDS |
| AACAAACATTAGAGATACTT+GGG | 0.539478 | 6.3:-60964832 | MS.gene73007:CDS |
| TGATATAAAATGTAGGTGAA+GGG | 0.544707 | 6.3:-60963646 | MS.gene73007:intron |
| TTATGTTTCTTGTAGGCTAG+TGG | 0.544994 | 6.3:-60963206 | MS.gene73007:intron |
| CTCATTAAGTGCCCAATCGA+GGG | 0.546784 | 6.3:+60964748 | None:intergenic |
| TCAGTCAAAGAAGGTACCAC+AGG | 0.550965 | 6.3:+60964785 | None:intergenic |
| GATATAAAATGTAGGTGAAG+GGG | 0.556811 | 6.3:-60963645 | MS.gene73007:intron |
| AGAAGAATCGGCAGGTCGAA+AGG | 0.557152 | 6.3:-60963582 | MS.gene73007:CDS |
| CAATGGCGGAGTTGGAAACA+AGG | 0.558511 | 6.3:-60966218 | MS.gene73007:CDS |
| CAATCGAGGGCTTTATGAAG+TGG | 0.559203 | 6.3:+60964761 | None:intergenic |
| AGGAACCGAAGCTCTTCTCA+TGG | 0.574875 | 6.3:-60966175 | MS.gene73007:CDS |
| TGGTCACAAGAAGAATCGGC+AGG | 0.599189 | 6.3:-60963590 | MS.gene73007:CDS |
| AGATACTTGGGAAATCTGAC+TGG | 0.600934 | 6.3:-60964820 | MS.gene73007:CDS |
| TCTCATTAAGTGCCCAATCG+AGG | 0.607236 | 6.3:+60964747 | None:intergenic |
| GAACCGAAGCTCTTCTCATG+GGG | 0.645463 | 6.3:-60966173 | MS.gene73007:CDS |
| CAGTCAAAGAAGGTACCACA+GGG | 0.673070 | 6.3:+60964786 | None:intergenic |
| CTGGTACTACTCCAGCCCTG+TGG | 0.699262 | 6.3:-60964801 | MS.gene73007:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATTAAATCTTAAAAT+TGG | - | chr6.3:60964215-60964234 | MS.gene73007:intron | 10.0% |
| !! | CATTATTAAATCTTAAAATT+GGG | - | chr6.3:60964216-60964235 | MS.gene73007:intron | 10.0% |
| !! | TATTGTAATGTTTAAAAAAT+CGG | + | chr6.3:60966116-60966135 | None:intergenic | 10.0% |
| !!! | TACTATATTTTAAACTTAAT+AGG | + | chr6.3:60965013-60965032 | None:intergenic | 10.0% |
| !!! | TTATTTTATAAACACTTAAT+AGG | - | chr6.3:60963567-60963586 | MS.gene73007:CDS | 10.0% |
| !! | GTTATTATGATATAAAATGT+AGG | - | chr6.3:60965735-60965754 | MS.gene73007:intron | 15.0% |
| !! | TAACTTAAGTATTACAAAAA+AGG | + | chr6.3:60965719-60965738 | None:intergenic | 15.0% |
| !!! | CAATAATACAATGTTTTATT+TGG | - | chr6.3:60965905-60965924 | MS.gene73007:intron | 15.0% |
| !!! | GTTATTTTGACAAAAAAAAA+GGG | + | chr6.3:60965099-60965118 | None:intergenic | 15.0% |
| !!! | TATTTGTTTTCATTGAAAAA+TGG | - | chr6.3:60963643-60963662 | MS.gene73007:intron | 15.0% |
| !!! | TGTTATTTTGACAAAAAAAA+AGG | + | chr6.3:60965100-60965119 | None:intergenic | 15.0% |
| !! | AAAAAATTTGGCATAATCTT+AGG | + | chr6.3:60964364-60964383 | None:intergenic | 20.0% |
| !! | AAATGTACTAAATAGACAAT+AGG | - | chr6.3:60965505-60965524 | MS.gene73007:intron | 20.0% |
| !! | AAGTTTGAATATTTGATTCT+AGG | - | chr6.3:60964328-60964347 | MS.gene73007:intron | 20.0% |
| !! | ACATAACGTATCATATATTT+AGG | - | chr6.3:60965048-60965067 | MS.gene73007:intron | 20.0% |
| !! | AGAATCAAATATTCAAACTT+GGG | + | chr6.3:60964328-60964347 | None:intergenic | 20.0% |
| !! | AGTAGCTTATTATATAACTT+CGG | - | chr6.3:60963715-60963734 | MS.gene73007:intron | 20.0% |
| !! | TAATTAAAACATGAACACAA+TGG | + | chr6.3:60964800-60964819 | None:intergenic | 20.0% |
| !! | TAGAATCAAATATTCAAACT+TGG | + | chr6.3:60964329-60964348 | None:intergenic | 20.0% |
| !! | TGCATTATTTATTTATGATC+TGG | + | chr6.3:60965956-60965975 | None:intergenic | 20.0% |
| !! | TTAGAGAATAATTGAACAAT+AGG | + | chr6.3:60965661-60965680 | None:intergenic | 20.0% |
| !!! | AATGTTTTATTTGGTTTCAT+TGG | - | chr6.3:60965914-60965933 | MS.gene73007:intron | 20.0% |
| !!! | AGTAATGATGTTTAAAATCA+TGG | - | chr6.3:60964940-60964959 | MS.gene73007:intron | 20.0% |
| !!! | CAAAGCACTAAAATATATTT+TGG | + | chr6.3:60963958-60963977 | None:intergenic | 20.0% |
| !!! | GGCATGATTTTTAAAAAATT+TGG | + | chr6.3:60964376-60964395 | None:intergenic | 20.0% |
| ! | AAAAAAAAGGGACAACAATT+TGG | + | chr6.3:60965087-60965106 | None:intergenic | 25.0% |
| ! | AAACTTAAGTATCCTAAAGT+AGG | - | chr6.3:60963193-60963212 | MS.gene73007:CDS | 25.0% |
| ! | AACAAACATTAGAGATACTT+GGG | - | chr6.3:60964556-60964575 | MS.gene73007:intron | 25.0% |
| ! | ACCTCAATGACTATAAAATA+TGG | - | chr6.3:60966158-60966177 | MS.gene73007:intron | 25.0% |
| ! | ACTTAATAGGTATAAGCATT+TGG | - | chr6.3:60963580-60963599 | MS.gene73007:CDS | 25.0% |
| ! | ATAACTTCGGAATAGATTAT+GGG | - | chr6.3:60963728-60963747 | MS.gene73007:intron | 25.0% |
| ! | ATATGGTTTATGTTTCTTGT+AGG | - | chr6.3:60966175-60966194 | MS.gene73007:CDS | 25.0% |
| ! | ATCAAAATAACACAACCAAA+AGG | + | chr6.3:60963876-60963895 | None:intergenic | 25.0% |
| ! | ATGATATAAAATGTAGGTGA+AGG | - | chr6.3:60965741-60965760 | MS.gene73007:intron | 25.0% |
| ! | ATTATAATAGATAGTGAGCT+AGG | - | chr6.3:60964298-60964317 | MS.gene73007:intron | 25.0% |
| ! | CTTAATAGGTATAAGCATTT+GGG | - | chr6.3:60963581-60963600 | MS.gene73007:CDS | 25.0% |
| ! | TAAGCTACTCAAATAACTAA+TGG | + | chr6.3:60963704-60963723 | None:intergenic | 25.0% |
| ! | TATAACTTCGGAATAGATTA+TGG | - | chr6.3:60963727-60963746 | MS.gene73007:intron | 25.0% |
| ! | TGATATAAAATGTAGGTGAA+GGG | - | chr6.3:60965742-60965761 | MS.gene73007:intron | 25.0% |
| ! | TTAAACCATTATGCAATAAG+TGG | - | chr6.3:60963521-60963540 | MS.gene73007:intron | 25.0% |
| !! | AAAGTTTAAAGTACTAAAGC+TGG | + | chr6.3:60965335-60965354 | None:intergenic | 25.0% |
| !! | ACCATATTTTATAGTCATTG+AGG | + | chr6.3:60966162-60966181 | None:intergenic | 25.0% |
| !! | TAATTTTTACTGTCCTTTTC+AGG | - | chr6.3:60964474-60964493 | MS.gene73007:intron | 25.0% |
| !! | TGTGTAAAGAGATTTTATAC+TGG | - | chr6.3:60963479-60963498 | MS.gene73007:intron | 25.0% |
| !!! | CATCAAACATGATTTTTTTC+AGG | + | chr6.3:60964920-60964939 | None:intergenic | 25.0% |
| AATCTTTCTACATCCATTCT+TGG | + | chr6.3:60963997-60964016 | None:intergenic | 30.0% | |
| AATGAATCTAGCAGATCAAT+TGG | + | chr6.3:60964739-60964758 | None:intergenic | 30.0% | |
| AATGTTGAACAACGTATACA+AGG | + | chr6.3:60964450-60964469 | None:intergenic | 30.0% | |
| AATTTGGTCACAAGAAGAAT+CGG | - | chr6.3:60965794-60965813 | MS.gene73007:intron | 30.0% | |
| ATGAATCTAGCAGATCAATT+GGG | + | chr6.3:60964738-60964757 | None:intergenic | 30.0% | |
| CACAAATTTCAACAACAGTT+TGG | - | chr6.3:60964841-60964860 | MS.gene73007:CDS | 30.0% | |
| CTCATTTACTTCTTGGAATT+TGG | - | chr6.3:60965778-60965797 | MS.gene73007:intron | 30.0% | |
| CTTATAATAAATGATGCCAG+TGG | + | chr6.3:60963908-60963927 | None:intergenic | 30.0% | |
| GAACAAACATTAGAGATACT+TGG | - | chr6.3:60964555-60964574 | MS.gene73007:intron | 30.0% | |
| GATAACCACTTATTGCATAA+TGG | + | chr6.3:60963529-60963548 | None:intergenic | 30.0% | |
| GATACGTTATGTTAAGTAGA+TGG | + | chr6.3:60965040-60965059 | None:intergenic | 30.0% | |
| GATATAAAATGTAGGTGAAG+GGG | - | chr6.3:60965743-60965762 | MS.gene73007:intron | 30.0% | |
| GCAAAATTCTTAAGAGCTAA+TGG | - | chr6.3:60964510-60964529 | MS.gene73007:intron | 30.0% | |
| TATAAGCATTTGGGTACATA+TGG | - | chr6.3:60963590-60963609 | MS.gene73007:CDS | 30.0% | |
| TCATTGGAAATGTATATCTC+AGG | - | chr6.3:60965440-60965459 | MS.gene73007:intron | 30.0% | |
| TGTACTAAATAGACAATAGG+AGG | - | chr6.3:60965508-60965527 | MS.gene73007:intron | 30.0% | |
| TGTGTTCAATGGATAACTAA+TGG | - | chr6.3:60964968-60964987 | MS.gene73007:intron | 30.0% | |
| TTATAAGTTCGTTTCGAATC+CGG | - | chr6.3:60963921-60963940 | MS.gene73007:intron | 30.0% | |
| TTGTATGTAAGAACCAAGAA+TGG | - | chr6.3:60963981-60964000 | MS.gene73007:intron | 30.0% | |
| TTGTTCAAGTATGACATGAT+TGG | + | chr6.3:60963440-60963459 | None:intergenic | 30.0% | |
| TTTGTTCATTCCTTCCATAT+GGG | - | chr6.3:60964118-60964137 | MS.gene73007:intron | 30.0% | |
| ! | AAAGAGATTTTATACTGGCA+GGG | - | chr6.3:60963484-60963503 | MS.gene73007:intron | 30.0% |
| ! | AATGCATTTCTCTTTTCTCA+TGG | - | chr6.3:60963311-60963330 | MS.gene73007:intron | 30.0% |
| ! | CAAAACCAATGTGATTTTGA+GGG | + | chr6.3:60965618-60965637 | None:intergenic | 30.0% |
| ! | CAGTTTCTAGAAAAAATCAC+AGG | + | chr6.3:60964023-60964042 | None:intergenic | 30.0% |
| ! | GTTCATTTGCTCTGAATTAT+TGG | - | chr6.3:60964084-60964103 | MS.gene73007:intron | 30.0% |
| ! | TAAAGAGATTTTATACTGGC+AGG | - | chr6.3:60963483-60963502 | MS.gene73007:intron | 30.0% |
| ! | TAATCTACTGGCTACTTTAA+AGG | - | chr6.3:60965130-60965149 | MS.gene73007:intron | 30.0% |
| ! | TTTCTCTTTTCTCATGGAAT+AGG | - | chr6.3:60963317-60963336 | MS.gene73007:intron | 30.0% |
| ! | TTTTGTTCATTCCTTCCATA+TGG | - | chr6.3:60964117-60964136 | MS.gene73007:intron | 30.0% |
| !! | AGTTTTGACAAAACTGTATC+TGG | - | chr6.3:60964155-60964174 | MS.gene73007:intron | 30.0% |
| !! | GTTTTGACAAAACTGTATCT+GGG | - | chr6.3:60964156-60964175 | MS.gene73007:intron | 30.0% |
| AACGTGACTCATTTACTTCT+TGG | - | chr6.3:60965771-60965790 | MS.gene73007:intron | 35.0% | |
| AAGTCAGGTATGGATGATTT+AGG | - | chr6.3:60964669-60964688 | MS.gene73007:intron | 35.0% | |
| ACAACTTCCTTCCGAATAAA+TGG | + | chr6.3:60964408-60964427 | None:intergenic | 35.0% | |
| ACTCAAGTAGACTATCAACA+TGG | + | chr6.3:60965368-60965387 | None:intergenic | 35.0% | |
| AGCTTTACTTGTTCCTGAAA+AGG | + | chr6.3:60964490-60964509 | None:intergenic | 35.0% | |
| ATTGCCAAGTAAATCCTGTA+GGG | + | chr6.3:60964055-60964074 | None:intergenic | 35.0% | |
| CACAACGCTAATTAATCTAC+TGG | - | chr6.3:60965118-60965137 | MS.gene73007:intron | 35.0% | |
| CAGGATTTACTTGGCAATAT+TGG | - | chr6.3:60964057-60964076 | MS.gene73007:intron | 35.0% | |
| CCAAGATCCTTCCATTTATT+CGG | - | chr6.3:60964394-60964413 | MS.gene73007:intron | 35.0% | |
| CTCAATAAGGACTGAAAATC+AGG | - | chr6.3:60965283-60965302 | MS.gene73007:intron | 35.0% | |
| CTTAATGAGACATCAAAGTC+AGG | - | chr6.3:60964654-60964673 | MS.gene73007:intron | 35.0% | |
| GATAACCGGAATCAAACTAA+CGG | - | chr6.3:60966043-60966062 | MS.gene73007:intron | 35.0% | |
| GTCAAAACTCAAGAATGTCT+TGG | + | chr6.3:60964144-60964163 | None:intergenic | 35.0% | |
| TAATAAATGATGCCAGTGGA+TGG | + | chr6.3:60963904-60963923 | None:intergenic | 35.0% | |
| TAGATTCATTGTTCTGTTGG+TGG | - | chr6.3:60964749-60964768 | MS.gene73007:CDS | 35.0% | |
| TATTGCCAAGTAAATCCTGT+AGG | + | chr6.3:60964056-60964075 | None:intergenic | 35.0% | |
| TCATGGTTAAGTGTGTTCAA+TGG | - | chr6.3:60964957-60964976 | MS.gene73007:intron | 35.0% | |
| TGCTAGATTCATTGTTCTGT+TGG | - | chr6.3:60964746-60964765 | MS.gene73007:CDS | 35.0% | |
| TGTATATCTCAGGAGATAGT+AGG | - | chr6.3:60965450-60965469 | MS.gene73007:intron | 35.0% | |
| TGTGTGTGTGTATGTTTCAT+TGG | - | chr6.3:60965424-60965443 | MS.gene73007:intron | 35.0% | |
| TTATGTTTCTTGTAGGCTAG+TGG | - | chr6.3:60966182-60966201 | MS.gene73007:CDS | 35.0% | |
| ! | AAATGCGATTAAGCACCTTT+TGG | - | chr6.3:60963858-60963877 | MS.gene73007:intron | 35.0% |
| ! | AACTTTTCCAAGATAGTGCT+TGG | - | chr6.3:60963354-60963373 | MS.gene73007:intron | 35.0% |
| ! | AAGGTGCTTAATCGCATTTA+GGG | + | chr6.3:60963857-60963876 | None:intergenic | 35.0% |
| ! | CAAGCATTTTCTAACAGATC+AGG | + | chr6.3:60965215-60965234 | None:intergenic | 35.0% |
| ! | CATTTGCTCTGAATTATTGG+TGG | - | chr6.3:60964087-60964106 | MS.gene73007:intron | 35.0% |
| ! | CCAAAACCAATGTGATTTTG+AGG | + | chr6.3:60965619-60965638 | None:intergenic | 35.0% |
| ! | GTCTCTAAGAAATGAGTTGT+GGG | - | chr6.3:60964268-60964287 | MS.gene73007:intron | 35.0% |
| ! | TGTCTCTAAGAAATGAGTTG+TGG | - | chr6.3:60964267-60964286 | MS.gene73007:intron | 35.0% |
| !! | AAAGGTGCTTAATCGCATTT+AGG | + | chr6.3:60963858-60963877 | None:intergenic | 35.0% |
| !! | TGCTGTTTCAGCAATTTCTT+TGG | + | chr6.3:60965865-60965884 | None:intergenic | 35.0% |
| !!! | AAGGAAGTTGTGTTGTTTTC+AGG | - | chr6.3:60964417-60964436 | MS.gene73007:intron | 35.0% |
| !!! | AAGTTGTGTTGTTTTCAGGT+TGG | - | chr6.3:60964421-60964440 | MS.gene73007:intron | 35.0% |
| !!! | AGTTGTGTTGTTTTCAGGTT+GGG | - | chr6.3:60964422-60964441 | MS.gene73007:intron | 35.0% |
| !!! | CCTCAAAATCACATTGGTTT+TGG | - | chr6.3:60965616-60965635 | MS.gene73007:intron | 35.0% |
| !!! | CTCATGGGGATTTTAATTGA+AGG | - | chr6.3:60963229-60963248 | MS.gene73007:intron | 35.0% |
| AACAACAGTTTGGATGATGC+AGG | - | chr6.3:60964851-60964870 | MS.gene73007:CDS | 40.0% | |
| ACTTCATAAAGCCCTCGATT+GGG | - | chr6.3:60964629-60964648 | MS.gene73007:intron | 40.0% | |
| AGATACTTGGGAAATCTGAC+TGG | - | chr6.3:60964568-60964587 | MS.gene73007:intron | 40.0% | |
| AGATCAATTGGGAAAATGCC+AGG | + | chr6.3:60964727-60964746 | None:intergenic | 40.0% | |
| AGGCTAGTGGTGATATTGAT+TGG | - | chr6.3:60966195-60966214 | MS.gene73007:CDS | 40.0% | |
| AGGTGCTTAATCGCATTTAG+GGG | + | chr6.3:60963856-60963875 | None:intergenic | 40.0% | |
| ATTCCGGTTATCATGAAGTC+CGG | + | chr6.3:60966035-60966054 | None:intergenic | 40.0% | |
| CCGAATAAATGGAAGGATCT+TGG | + | chr6.3:60964397-60964416 | None:intergenic | 40.0% | |
| CTAGTGAGCTAGTTGAATGT+GGG | - | chr6.3:60965545-60965564 | MS.gene73007:intron | 40.0% | |
| CTTCCTTCCGAATAAATGGA+AGG | + | chr6.3:60964404-60964423 | None:intergenic | 40.0% | |
| GATCCTTCCATTTATTCGGA+AGG | - | chr6.3:60964398-60964417 | MS.gene73007:intron | 40.0% | |
| TCATGAAGTCCGGTTGAATT+TGG | + | chr6.3:60966025-60966044 | None:intergenic | 40.0% | |
| TCTAGTGAGCTAGTTGAATG+TGG | - | chr6.3:60965544-60965563 | MS.gene73007:intron | 40.0% | |
| TGAAGTGGTTCAGTCAAAGA+AGG | + | chr6.3:60964615-60964634 | None:intergenic | 40.0% | |
| TGAGACATCAAAGTCAGGTA+TGG | - | chr6.3:60964659-60964678 | MS.gene73007:intron | 40.0% | |
| TTAAAATTGGGTGCGTAGAC+CGG | - | chr6.3:60964228-60964247 | MS.gene73007:intron | 40.0% | |
| TTCCTCCCTCAAAATCACAT+TGG | - | chr6.3:60965610-60965629 | MS.gene73007:intron | 40.0% | |
| TTGCCAAGTAAATCCTGTAG+GGG | + | chr6.3:60964054-60964073 | None:intergenic | 40.0% | |
| TTTCCCCTACAGGATTTACT+TGG | - | chr6.3:60964048-60964067 | MS.gene73007:intron | 40.0% | |
| ! | AACTGTTTAGTTTCCCCTAC+AGG | - | chr6.3:60964038-60964057 | MS.gene73007:intron | 40.0% |
| ! | ACTAATGGCTTGCGAAACTT+TGG | - | chr6.3:60964983-60965002 | MS.gene73007:intron | 40.0% |
| ! | ATAGTCATTGAGGTGTCAGT+CGG | + | chr6.3:60966152-60966171 | None:intergenic | 40.0% |
| ! | TTTTGATATGCACCATCCAC+TGG | - | chr6.3:60963889-60963908 | MS.gene73007:intron | 40.0% |
| ! | TTTTTCCCTGCTGCTCAATA+AGG | - | chr6.3:60965270-60965289 | MS.gene73007:intron | 40.0% |
| !! | AACCAATGTGATTTTGAGGG+AGG | + | chr6.3:60965615-60965634 | None:intergenic | 40.0% |
| !! | CAAAAGCGCTCGTGTAATAT+TGG | + | chr6.3:60963791-60963810 | None:intergenic | 40.0% |
| !! | TCATTGTTCTGTTGGTGGTA+GGG | - | chr6.3:60964754-60964773 | MS.gene73007:CDS | 40.0% |
| !! | TTCATTGTTCTGTTGGTGGT+AGG | - | chr6.3:60964753-60964772 | MS.gene73007:CDS | 40.0% |
| !!! | TATTTTGGCTTGCATACGTC+CGG | + | chr6.3:60963943-60963962 | None:intergenic | 40.0% |
| AATCCCCATGAGAAGAGCTT+CGG | + | chr6.3:60963221-60963240 | None:intergenic | 45.0% | |
| AATGTCTTGGCCCATATGGA+AGG | + | chr6.3:60964131-60964150 | None:intergenic | 45.0% | |
| AGAGCTTCGGTTCCTACTTT+AGG | + | chr6.3:60963208-60963227 | None:intergenic | 45.0% | |
| CAACCGGACTTCATGATAAC+CGG | - | chr6.3:60966029-60966048 | MS.gene73007:intron | 45.0% | |
| CAAGAATGTCTTGGCCCATA+TGG | + | chr6.3:60964135-60964154 | None:intergenic | 45.0% | |
| CACTTCATAAAGCCCTCGAT+TGG | - | chr6.3:60964628-60964647 | MS.gene73007:intron | 45.0% | |
| CAGAGACAGTAGACAAACTG+AGG | + | chr6.3:60965402-60965421 | None:intergenic | 45.0% | |
| CAGGACACTCAAGATCACAT+TGG | - | chr6.3:60965575-60965594 | MS.gene73007:intron | 45.0% | |
| CGGTTCAAGCCAAATTCAAC+CGG | - | chr6.3:60966013-60966032 | MS.gene73007:intron | 45.0% | |
| CTAGTTCAACCGATAGAACC+GGG | + | chr6.3:60966083-60966102 | None:intergenic | 45.0% | |
| CTCATTAAGTGCCCAATCGA+GGG | + | chr6.3:60964643-60964662 | None:intergenic | 45.0% | |
| GAAAATGTTCGAACCTACCG+TGG | - | chr6.3:60965982-60966001 | MS.gene73007:intron | 45.0% | |
| GCTAGTTCAACCGATAGAAC+CGG | + | chr6.3:60966084-60966103 | None:intergenic | 45.0% | |
| GGTGCTTAATCGCATTTAGG+GGG | + | chr6.3:60963855-60963874 | None:intergenic | 45.0% | |
| GTTGAATGTGGGAGACTTTC+AGG | - | chr6.3:60965556-60965575 | MS.gene73007:intron | 45.0% | |
| TCAATTGGGAAAATGCCAGG+AGG | + | chr6.3:60964724-60964743 | None:intergenic | 45.0% | |
| TCAGTCCTTATTGAGCAGCA+GGG | + | chr6.3:60965278-60965297 | None:intergenic | 45.0% | |
| TCTCATTAAGTGCCCAATCG+AGG | + | chr6.3:60964644-60964663 | None:intergenic | 45.0% | |
| TCTTGAGCCAAGCACTATCT+TGG | + | chr6.3:60963364-60963383 | None:intergenic | 45.0% | |
| TGTATTGAGAAGTAGCCTCC+TGG | - | chr6.3:60964706-60964725 | MS.gene73007:intron | 45.0% | |
| TGTCCTATTCCCGGTTCTAT+CGG | - | chr6.3:60966071-60966090 | MS.gene73007:intron | 45.0% | |
| TTCAGTCCTTATTGAGCAGC+AGG | + | chr6.3:60965279-60965298 | None:intergenic | 45.0% | |
| ! | AATCGCATTTAGGGGGCATA+TGG | + | chr6.3:60963848-60963867 | None:intergenic | 45.0% |
| ! | CAATCGAGGGCTTTATGAAG+TGG | + | chr6.3:60964630-60964649 | None:intergenic | 45.0% |
| ! | CGAAAGGTCTTGTCTGCTTT+AGG | - | chr6.3:60965822-60965841 | MS.gene73007:intron | 45.0% |
| ! | GTTCGCCGTTAGTTTGATTC+CGG | + | chr6.3:60966051-60966070 | None:intergenic | 45.0% |
| ! | GTTCTATCGGTTGAACTAGC+TGG | - | chr6.3:60966084-60966103 | MS.gene73007:intron | 45.0% |
| !! | ACAGCAGTGTTGACACTTTC+CGG | + | chr6.3:60964250-60964269 | None:intergenic | 45.0% |
| !! | CAGTCAAAGAAGGTACCACA+GGG | + | chr6.3:60964605-60964624 | None:intergenic | 45.0% |
| !! | CGGTTGAATTTGGCTTGAAC+CGG | + | chr6.3:60966015-60966034 | None:intergenic | 45.0% |
| !! | TCAGTCAAAGAAGGTACCAC+AGG | + | chr6.3:60964606-60964625 | None:intergenic | 45.0% |
| AACCTACCGTGGTTCAACTC+CGG | - | chr6.3:60965993-60966012 | MS.gene73007:intron | 50.0% | |
| AGAAGAATCGGCAGGTCGAA+AGG | - | chr6.3:60965806-60965825 | MS.gene73007:intron | 50.0% | |
| AGGAACCGAAGCTCTTCTCA+TGG | - | chr6.3:60963213-60963232 | MS.gene73007:intron | 50.0% | |
| CAACCGATAGAACCGGGAAT+AGG | + | chr6.3:60966077-60966096 | None:intergenic | 50.0% | |
| CTTGAACCGGAGTTGAACCA+CGG | + | chr6.3:60966002-60966021 | None:intergenic | 50.0% | |
| GAACCGAAGCTCTTCTCATG+GGG | - | chr6.3:60963215-60963234 | MS.gene73007:intron | 50.0% | |
| GGAACCGAAGCTCTTCTCAT+GGG | - | chr6.3:60963214-60963233 | MS.gene73007:intron | 50.0% | |
| TGGTCACAAGAAGAATCGGC+AGG | - | chr6.3:60965798-60965817 | MS.gene73007:intron | 50.0% | |
| AACCGGAGTTGAACCACGGT+AGG | + | chr6.3:60965998-60966017 | None:intergenic | 55.0% | |
| ACGGCGAACTGTCCTATTCC+CGG | - | chr6.3:60966062-60966081 | MS.gene73007:intron | 55.0% | |
| !! | CAAAGAAGGTACCACAGGGC+TGG | + | chr6.3:60964601-60964620 | None:intergenic | 55.0% |
| CTGGTACTACTCCAGCCCTG+TGG | - | chr6.3:60964587-60964606 | MS.gene73007:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 60963172 | 60966238 | 60963172 | ID=MS.gene73007 |
| chr6.3 | mRNA | 60963172 | 60966238 | 60963172 | ID=MS.gene73007.t1;Parent=MS.gene73007 |
| chr6.3 | exon | 60966160 | 60966238 | 60966160 | ID=MS.gene73007.t1.exon1;Parent=MS.gene73007.t1 |
| chr6.3 | CDS | 60966160 | 60966238 | 60966160 | ID=cds.MS.gene73007.t1;Parent=MS.gene73007.t1 |
| chr6.3 | exon | 60964735 | 60964914 | 60964735 | ID=MS.gene73007.t1.exon2;Parent=MS.gene73007.t1 |
| chr6.3 | CDS | 60964735 | 60964914 | 60964735 | ID=cds.MS.gene73007.t1;Parent=MS.gene73007.t1 |
| chr6.3 | exon | 60963526 | 60963653 | 60963526 | ID=MS.gene73007.t1.exon3;Parent=MS.gene73007.t1 |
| chr6.3 | CDS | 60963526 | 60963653 | 60963526 | ID=cds.MS.gene73007.t1;Parent=MS.gene73007.t1 |
| chr6.3 | exon | 60963172 | 60963213 | 60963172 | ID=MS.gene73007.t1.exon4;Parent=MS.gene73007.t1 |
| chr6.3 | CDS | 60963172 | 60963213 | 60963172 | ID=cds.MS.gene73007.t1;Parent=MS.gene73007.t1 |
| Gene Sequence |
| Protein sequence |
