AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80821


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80821.t1 MTR_6g083730 90.669 493 36 2 1 491 1 485 0.0 920
MS.gene80821.t1 MTR_8g104510 63.579 475 161 9 1 471 1 467 0.0 599
MS.gene80821.t1 MTR_8g104490 62.346 486 168 12 1 480 1 477 0.0 574
MS.gene80821.t1 MTR_6g083320 92.308 299 21 1 1 297 1 299 0.0 568
MS.gene80821.t1 MTR_6g083320 83.333 132 14 1 360 491 296 419 6.12e-70 229
MS.gene80821.t1 MTR_8g104490 63.789 417 138 10 69 480 4 412 4.11e-179 509
MS.gene80821.t1 MTR_4g128600 46.135 414 203 9 4 412 14 412 2.37e-118 361
MS.gene80821.t1 MTR_4g090970 46.582 395 195 8 2 390 13 397 1.40e-113 348
MS.gene80821.t1 MTR_2g011810 45.202 396 202 7 1 390 12 398 1.12e-112 347
MS.gene80821.t1 MTR_2g450080 41.573 445 233 9 4 440 11 436 1.88e-107 332
MS.gene80821.t1 MTR_4g106810 47.386 306 152 7 14 318 9 306 3.04e-81 262
MS.gene80821.t1 MTR_6g083810 90.299 134 11 1 1 132 1 134 2.82e-80 246
MS.gene80821.t1 MTR_7g112000 35.429 350 207 9 50 393 44 380 4.03e-52 184
MS.gene80821.t1 MTR_7g111960 33.918 342 213 9 46 381 56 390 1.04e-46 171
MS.gene80821.t1 MTR_7g111980 34.125 337 201 8 50 379 59 381 7.64e-46 168
MS.gene80821.t1 MTR_7g111980 36.271 295 175 7 92 379 10 298 1.95e-44 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80821.t1 AT1G73805 50.208 480 205 11 1 476 1 450 2.06e-150 437
MS.gene80821.t1 AT5G57580 47.781 383 183 7 9 385 17 388 4.02e-115 353
MS.gene80821.t1 AT4G25800 46.134 388 191 7 4 385 2 377 8.93e-111 340
MS.gene80821.t1 AT4G25800 46.134 388 191 7 4 385 2 377 8.93e-111 340
MS.gene80821.t1 AT2G18750 38.900 491 271 12 4 475 16 496 1.86e-107 333
MS.gene80821.t1 AT2G18750 38.900 491 271 12 4 475 16 496 1.86e-107 333
MS.gene80821.t1 AT2G18750 38.900 491 271 12 4 475 16 496 1.86e-107 333
MS.gene80821.t1 AT2G24300 42.526 388 214 6 4 387 3 385 1.12e-95 301
MS.gene80821.t1 AT2G24300 42.526 388 214 6 4 387 7 389 1.15e-95 301
MS.gene80821.t1 AT4G31000 40.749 427 230 11 11 425 13 428 2.95e-94 296
MS.gene80821.t1 AT5G62570 38.168 393 218 9 1 384 1 377 2.69e-86 275
MS.gene80821.t1 AT5G62570 38.933 375 204 9 1 366 1 359 8.51e-86 269
MS.gene80821.t1 AT2G24300 43.713 334 181 5 58 387 8 338 5.00e-84 270
MS.gene80821.t1 AT5G62570 39.503 362 198 8 32 384 13 362 1.26e-83 267
MS.gene80821.t1 AT4G31000 37.995 379 199 10 58 425 54 407 7.49e-71 235
MS.gene80821.t1 AT5G62570 40.924 303 159 7 1 298 1 288 2.53e-69 224
MS.gene80821.t1 AT5G26920 36.288 361 208 8 29 384 24 367 3.11e-69 227
MS.gene80821.t1 AT5G26920 36.288 361 208 8 29 384 24 367 2.38e-68 229
MS.gene80821.t1 AT5G26920 36.011 361 201 9 29 384 24 359 5.82e-65 220

Find 114 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAAGGAGCAGGAAGTTT+AGG 0.223342 6.2:-82353596 MS.gene80821:CDS
GTAGAGCTATATAGATAAAT+TGG 0.240990 6.2:-82351622 MS.gene80821:intron
GAAGACTTGTTGGAACAATT+TGG 0.268874 6.2:+82353823 None:intergenic
GGGAAGAGACCATTACTTTC+TGG 0.273521 6.2:-82353690 MS.gene80821:CDS
GCTTTAATTAATTTGCATAT+TGG 0.279068 6.2:+82351826 None:intergenic
ACCACAATCTCTAGCTTTAT+AGG 0.281295 6.2:+82353795 None:intergenic
AGTTTCATACCTGTGAAAAT+TGG 0.291885 6.2:+82355161 None:intergenic
ACTGTTGCTGGATGATTGTT+TGG 0.310236 6.2:+82350901 None:intergenic
TCAGGCCTTAGGGACATTAA+TGG 0.310731 6.2:-82350679 MS.gene80821:CDS
TATGTTGTTGCTACTGTTGC+TGG 0.313492 6.2:+82350889 None:intergenic
TGCATTTGGTGTTGTGGTAT+AGG 0.314012 6.2:+82350762 None:intergenic
TCAACAAGACTTATGCTTAG+AGG 0.315407 6.2:+82353861 None:intergenic
AATGCAAATGGATTTCCTTT+TGG 0.323071 6.2:-82350745 MS.gene80821:CDS
TATCATCAGAATCAATATTA+TGG 0.324552 6.2:-82350868 MS.gene80821:CDS
TATATTGTACCTTATTCATT+TGG 0.342595 6.2:+82351761 None:intergenic
GATTTCATTCGTTTCTCGTT+TGG 0.343840 6.2:+82356351 None:intergenic
GATAAGGAGCAGGAAGTTTA+GGG 0.346752 6.2:-82353595 MS.gene80821:CDS
CACCTTCAGGTTCAGGCCTT+AGG 0.352361 6.2:-82350690 MS.gene80821:CDS
TTGGAGAAGCATACACAAAA+TGG 0.358634 6.2:-82351599 MS.gene80821:CDS
CTAGAGATTGTGGTACTTGA+TGG 0.361616 6.2:-82353786 MS.gene80821:CDS
GTACTTGAGCCAAATGAATA+AGG 0.364385 6.2:-82351770 MS.gene80821:intron
AAAGGAAATCCATTTGCATT+TGG 0.365748 6.2:+82350748 None:intergenic
GAAGAGGTGGATAGAGCAAT+TGG 0.372285 6.2:-82355290 MS.gene80821:CDS
GACTGAGGCATTTGTTGTTA+AGG 0.376185 6.2:-82353517 MS.gene80821:CDS
CAGGCCTTAGGGACATTAAT+GGG 0.376761 6.2:-82350678 MS.gene80821:CDS
CCACAATCTCTAGCTTTATA+GGG 0.385020 6.2:+82353796 None:intergenic
ATATATACCTCTCTTAGCTT+TGG 0.385685 6.2:+82352486 None:intergenic
GCTTTCCACCTTCCATCAAT+AGG 0.389606 6.2:-82355262 MS.gene80821:CDS
ATAGGGTAAGGAAGACTTGT+TGG 0.390458 6.2:+82353813 None:intergenic
GTTGTTGATCCCTTGGTGCT+TGG 0.401027 6.2:+82355222 None:intergenic
GTTTCATACCTGTGAAAATT+GGG 0.401177 6.2:+82355162 None:intergenic
GATGAGGACATGACACCTTC+AGG 0.405456 6.2:-82350703 MS.gene80821:CDS
GAAGTTTAGGGTTGCAGTTA+TGG 0.408854 6.2:-82353583 MS.gene80821:CDS
TAATGAAGGTGACCTATTGA+TGG 0.408912 6.2:+82355250 None:intergenic
GACATGACACCTTCAGGTTC+AGG 0.411025 6.2:-82350697 MS.gene80821:CDS
GTGTGGCGCCTAGAGAAGAT+AGG 0.412903 6.2:-82352594 MS.gene80821:CDS
TACATAGTGAAGGAAAGAAC+TGG 0.419237 6.2:-82353711 MS.gene80821:CDS
TACAACTCTCATTCAACAAA+AGG 0.425881 6.2:-82355193 MS.gene80821:CDS
CACATGATGAAAATGAGAAC+TGG 0.432538 6.2:-82353755 MS.gene80821:CDS
AAGGTTGGTTGTTGATCCCT+TGG 0.434839 6.2:+82355215 None:intergenic
ACCTTCAGGTTCAGGCCTTA+GGG 0.438529 6.2:-82350689 MS.gene80821:CDS
CATCTTTCCCTATCTTCTCT+AGG 0.450984 6.2:+82352586 None:intergenic
AGAGGTGGAATTGCACCAAT+TGG 0.453092 6.2:-82353648 MS.gene80821:CDS
ACCACAACACCAAATGCAAA+TGG 0.454821 6.2:-82350757 MS.gene80821:CDS
GCCATTTGTGCATTATTGCT+TGG 0.455048 6.2:+82350811 None:intergenic
ATGGGAGTAATCAAAGTGTT+AGG 0.455811 6.2:-82353554 MS.gene80821:CDS
CAGATAATTCTAGCTGGATA+AGG 0.456631 6.2:-82353611 MS.gene80821:CDS
ATCTCTAGCTTTATAGGGTA+AGG 0.456668 6.2:+82353801 None:intergenic
ACATGGGGAGCAAGATCTAT+AGG 0.460309 6.2:-82351882 MS.gene80821:CDS
TTAATTAAAGCTAATATCAA+TGG 0.468078 6.2:-82351814 MS.gene80821:CDS
TTTGTTGAATGAGAGTTGTA+AGG 0.470397 6.2:+82355196 None:intergenic
TCCATTTGCATTTGGTGTTG+TGG 0.474676 6.2:+82350756 None:intergenic
GCATATTGGATTCAGAAGAA+TGG 0.478493 6.2:+82351840 None:intergenic
AATGAGTTGGAGGAAATTGA+TGG 0.479528 6.2:-82351576 MS.gene80821:CDS
CAATTCCACCTCTCATAGTA+AGG 0.486241 6.2:+82353658 None:intergenic
ACCAAGCAATAATGCACAAA+TGG 0.486276 6.2:-82350812 MS.gene80821:CDS
AACATTGCTTTGTTAACTCA+AGG 0.487994 6.2:-82351540 MS.gene80821:intron
TTGGCTCAAGTACTCTCTGC+TGG 0.488877 6.2:+82351780 None:intergenic
CACAAAATGGAATGAGTTGG+AGG 0.508685 6.2:-82351586 MS.gene80821:CDS
CACACATCATCGCCAAGCAT+TGG 0.517632 6.2:+82352612 None:intergenic
CCATCACAAAATGATGGCCA+AGG 0.521911 6.2:-82352556 MS.gene80821:CDS
AAACATCATCCACCAATGCT+TGG 0.524035 6.2:-82352624 MS.gene80821:CDS
CCCTATAAAGCTAGAGATTG+TGG 0.525360 6.2:-82353796 MS.gene80821:CDS
ATTCTAGCTGGATAAGGAGC+AGG 0.530678 6.2:-82353605 MS.gene80821:CDS
TGGTTAGGTGAGTGAAGAGG+TGG 0.534317 6.2:-82355303 MS.gene80821:intron
GGTGCTTGGATTCTTAATGA+AGG 0.535525 6.2:+82355236 None:intergenic
AGCTATATAGATAAATTGGT+TGG 0.536950 6.2:-82351618 MS.gene80821:CDS
TTGAATGAGAGTTGTAAGGT+TGG 0.548181 6.2:+82355200 None:intergenic
GTGAACTCTATGTCTCCAAT+TGG 0.550652 6.2:+82353633 None:intergenic
AGTTCACAGATAATTCTAGC+TGG 0.556731 6.2:-82353617 MS.gene80821:CDS
GTTGCAGTTATGGTGAGTCA+TGG 0.556840 6.2:-82353573 MS.gene80821:CDS
ACATCATCGCCAAGCATTGG+TGG 0.557359 6.2:+82352615 None:intergenic
TGAACCCATTAATGTCCCTA+AGG 0.560681 6.2:+82350674 None:intergenic
GATGGCCAAGGGGATCAAAA+CGG 0.564022 6.2:-82352544 MS.gene80821:CDS
TTGCAGTTATGGTGAGTCAT+GGG 0.566538 6.2:-82353572 MS.gene80821:CDS
TGTGAGCCTGTGAAGCCAAA+AGG 0.567683 6.2:+82350730 None:intergenic
ATACACAAAATGGAATGAGT+TGG 0.570127 6.2:-82351589 MS.gene80821:CDS
CTAGAGAAGATAGGGAAAGA+TGG 0.572158 6.2:-82352585 MS.gene80821:CDS
TTCAATTCTCCAGAAAGTAA+TGG 0.573973 6.2:+82353681 None:intergenic
AGCTTTCCATCACAAAATGA+TGG 0.576938 6.2:-82352562 MS.gene80821:CDS
CAAAGTGTTAGGATTCAAGA+AGG 0.583699 6.2:-82353543 MS.gene80821:CDS
AGTGCATACGAAGCAAAAGA+AGG 0.588320 6.2:+82356321 None:intergenic
TGTGGCGCCTAGAGAAGATA+GGG 0.589096 6.2:-82352593 MS.gene80821:CDS
CAATGCTTGGCGATGATGTG+TGG 0.590954 6.2:-82352611 MS.gene80821:CDS
CATCACAAAATGATGGCCAA+GGG 0.599188 6.2:-82352555 MS.gene80821:CDS
ATTCAATAAATACATAGTGA+AGG 0.602832 6.2:-82353721 MS.gene80821:CDS
CATACCTGTGAAAATTGGGA+GGG 0.602874 6.2:+82355166 None:intergenic
TCATACCTGTGAAAATTGGG+AGG 0.603052 6.2:+82355165 None:intergenic
GAATTGAACCTTACTATGAG+AGG 0.607156 6.2:-82353666 MS.gene80821:CDS
CACAAATGGCAAGCAGTGAG+TGG 0.611326 6.2:-82350798 MS.gene80821:CDS
TTGAACCTTACTATGAGAGG+TGG 0.618381 6.2:-82353663 MS.gene80821:CDS
TCCCTAAGGCCTGAACCTGA+AGG 0.620292 6.2:+82350688 None:intergenic
GCATGCAATGACTTGTGACA+TGG 0.626229 6.2:-82351899 MS.gene80821:CDS
AGTAGAATACTCGACGCTGA+AGG 0.629771 6.2:-82353888 MS.gene80821:CDS
ATTTGGTTAGGTGAGTGAAG+AGG 0.632675 6.2:-82355306 MS.gene80821:intron
ACATAGTGAAGGAAAGAACT+GGG 0.634050 6.2:-82353710 MS.gene80821:CDS
ATTAAGAATCCAAGCACCAA+GGG 0.638386 6.2:-82355231 MS.gene80821:CDS
CAGTTAATGTGCAAAACATG+CGG 0.638840 6.2:-82356142 MS.gene80821:CDS
GGGACATTAATGGGTTCACA+AGG 0.645434 6.2:-82350669 MS.gene80821:CDS
CATTAAGAATCCAAGCACCA+AGG 0.647255 6.2:-82355232 MS.gene80821:CDS
AGCAAGATCTATAGGTACCG+TGG 0.658732 6.2:-82351874 MS.gene80821:CDS
CACAGGCTCACAATCAGATG+AGG 0.659714 6.2:-82350719 MS.gene80821:CDS
GAATGGTAAACTGAGGTCCA+CGG 0.664053 6.2:+82351857 None:intergenic
GGTGACCTATTGATGGAAGG+TGG 0.664907 6.2:+82355257 None:intergenic
TGATACTCCAAAGCTAAGAG+AGG 0.665341 6.2:-82352493 MS.gene80821:intron
CATGCAATGACTTGTGACAT+GGG 0.667953 6.2:-82351898 MS.gene80821:CDS
TTCAGAAGAATGGTAAACTG+AGG 0.674138 6.2:+82351850 None:intergenic
GAAGGTGACCTATTGATGGA+AGG 0.674542 6.2:+82355254 None:intergenic
ATCACAAAATGATGGCCAAG+GGG 0.679582 6.2:-82352554 MS.gene80821:CDS
TGGGGATGTCTGATAGAATG+TGG 0.679640 6.2:-82351936 MS.gene80821:CDS
TTTGTTGTTAAGGATCATCG+TGG 0.682651 6.2:-82353507 MS.gene80821:CDS
GATTCAAGAAGGCATGACTG+AGG 0.696401 6.2:-82353532 MS.gene80821:CDS
AATTATAGGTGATCAAACTG+TGG 0.703154 6.2:-82350932 MS.gene80821:intron
ATGCAATGACTTGTGACATG+GGG 0.729736 6.2:-82351897 MS.gene80821:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTAATATATTTACTTAA+AGG + chr6.2:82355035-82355054 None:intergenic 10.0%
!! ATAAACTTAAATTACTAAAA+AGG + chr6.2:82352644-82352663 None:intergenic 10.0%
!! TACAAATTATAATACAATTA+AGG + chr6.2:82352594-82352613 None:intergenic 10.0%
!! TGATATTATCTTAAAATTTA+AGG - chr6.2:82351280-82351299 MS.gene80821:intron 10.0%
!! TTTAATATGAACTTAATTAT+AGG - chr6.2:82356116-82356135 MS.gene80821:CDS 10.0%
!!! ATAGTCTTTTTTTTTTTTTT+TGG - chr6.2:82352751-82352770 MS.gene80821:intron 10.0%
!!! TTTTTAGATACTTAATAAAA+TGG + chr6.2:82356036-82356055 None:intergenic 10.0%
!!! TTTTTTATTAAAAATGGTAA+AGG + chr6.2:82351371-82351390 None:intergenic 10.0%
!! ACTTTATTATATGATTCATT+TGG - chr6.2:82351739-82351758 MS.gene80821:intron 15.0%
!! AGGTATATATCTTTATAATT+AGG - chr6.2:82354589-82354608 MS.gene80821:intron 15.0%
!! ATACAAATATATTGTTTGTT+GGG + chr6.2:82351148-82351167 None:intergenic 15.0%
!! CTATTTAAGGAAAAAAAAAT+TGG + chr6.2:82352128-82352147 None:intergenic 15.0%
!! CTTAAAAATTCATATGAAAA+TGG + chr6.2:82352370-82352389 None:intergenic 15.0%
!! GGTATATATCTTTATAATTA+GGG - chr6.2:82354590-82354609 MS.gene80821:intron 15.0%
!! GTATATATCTTTATAATTAG+GGG - chr6.2:82354591-82354610 MS.gene80821:intron 15.0%
!! TAAATGTGAAATGAAAAATA+TGG - chr6.2:82354027-82354046 MS.gene80821:intron 15.0%
!! TATACAAATATATTGTTTGT+TGG + chr6.2:82351149-82351168 None:intergenic 15.0%
!! TATATTATTGCAATATTGAT+TGG - chr6.2:82353666-82353685 MS.gene80821:CDS 15.0%
!! TATTATCTTAAAATTTAAGG+CGG - chr6.2:82351283-82351302 MS.gene80821:intron 15.0%
!! TTAATTAAAGCTAATATCAA+TGG - chr6.2:82355248-82355267 MS.gene80821:CDS 15.0%
!! TTGAAATGAAAAAAAGATAA+AGG - chr6.2:82352519-82352538 MS.gene80821:CDS 15.0%
!! TTGAAATGAAAAAAAGATAA+AGG + chr6.2:82352538-82352519 None:intergenic 15.0%
!!! AATTTTAAGGTTGTTTAATA+TGG + chr6.2:82351473-82351492 None:intergenic 15.0%
!!! ATCTTTTTTTCATTTCAATT+TGG + chr6.2:82352353-82352334 None:intergenic 15.0%
!!! ATTTTCATAATTCATAAACT+TGG - chr6.2:82353592-82353611 MS.gene80821:CDS 15.0%
!!! GATGAATTAATTTTTAAACT+CGG - chr6.2:82355766-82355785 MS.gene80821:intron 15.0%
!!! TATTTTCTTAAAAATGGTAA+AGG + chr6.2:82351346-82351365 None:intergenic 15.0%
!!! TTCATGATTTTATTTTCTAA+TGG - chr6.2:82352397-82352416 MS.gene80821:intron 15.0%
!! AAGAAATTGATCTTGTATAA+TGG + chr6.2:82354772-82354791 None:intergenic 20.0%
!! AATATAGCTTATGAAAATTG+AGG - chr6.2:82351196-82351215 MS.gene80821:intron 20.0%
!! ATAAATTCGGTAATCAAATT+TGG + chr6.2:82353062-82353081 None:intergenic 20.0%
!! ATATAGCTTATGAAAATTGA+GGG - chr6.2:82351197-82351216 MS.gene80821:intron 20.0%
!! ATTATATGATTCATTTGGTT+AGG - chr6.2:82351744-82351763 MS.gene80821:intron 20.0%
!! ATTCAATAAATACATAGTGA+AGG - chr6.2:82353341-82353360 MS.gene80821:intron 20.0%
!! ATTTAACATATTGGTCATAT+CGG + chr6.2:82355868-82355887 None:intergenic 20.0%
!! GTTACCTAAAATAAAGTTAA+GGG + chr6.2:82352301-82352320 None:intergenic 20.0%
!! TAACTCGTTTGTTTATTTAA+AGG - chr6.2:82354841-82354860 MS.gene80821:intron 20.0%
!! TATAAAAAACCCACTTATTA+TGG - chr6.2:82354156-82354175 MS.gene80821:intron 20.0%
!! TATATTGTACCTTATTCATT+TGG + chr6.2:82355304-82355323 None:intergenic 20.0%
!! TATCATCAGAATCAATATTA+TGG - chr6.2:82356194-82356213 MS.gene80821:intron 20.0%
!! TGTTACCTAAAATAAAGTTA+AGG + chr6.2:82352302-82352321 None:intergenic 20.0%
!! TTACACTATATGTTAGATAT+TGG - chr6.2:82355374-82355393 MS.gene80821:intron 20.0%
!! TTATTTACATTTACCTAAGT+AGG + chr6.2:82352231-82352250 None:intergenic 20.0%
!!! AACATGACTTAATTTTTTGT+AGG - chr6.2:82353639-82353658 MS.gene80821:CDS 20.0%
!!! AAGGTCTATTTTCTTAAAAA+TGG + chr6.2:82351352-82351371 None:intergenic 20.0%
!!! ATACATATTTGAAGTTAATG+TGG - chr6.2:82351065-82351084 MS.gene80821:intron 20.0%
!!! ATGTGACTTTTTAGTTAAAT+AGG + chr6.2:82352173-82352192 None:intergenic 20.0%
!!! ATTTATCTGAAATCAGATTT+TGG - chr6.2:82355100-82355119 MS.gene80821:intron 20.0%
!!! CAAGACTCAAATAAATTTTA+AGG + chr6.2:82351486-82351505 None:intergenic 20.0%
!!! CATCTTAATAAGGTATTTAA+GGG + chr6.2:82353762-82353781 None:intergenic 20.0%
!!! CTTTATTTTAGGTAACAATT+TGG - chr6.2:82352305-82352324 MS.gene80821:intron 20.0%
!!! GCTTTAATTAATTTGCATAT+TGG + chr6.2:82355239-82355258 None:intergenic 20.0%
!!! TAAGTGTTTTTGTTAAGTAT+CGG - chr6.2:82353987-82354006 MS.gene80821:intron 20.0%
!!! TAAGTTTAAGTTCAAATTTG+AGG + chr6.2:82354812-82354831 None:intergenic 20.0%
!!! TATGAAACATGCTTTTAAAT+AGG - chr6.2:82352868-82352887 MS.gene80821:intron 20.0%
!!! TCTTTATGCTAATTTTGTTT+AGG - chr6.2:82354653-82354672 MS.gene80821:intron 20.0%
!!! TGATATGATTCTCTAAAAAA+TGG - chr6.2:82351308-82351327 MS.gene80821:intron 20.0%
!!! TGTACAAAAATATTGTTGTT+AGG - chr6.2:82351235-82351254 MS.gene80821:intron 20.0%
!!! TTTATCTGAAATCAGATTTT+GGG - chr6.2:82355101-82355120 MS.gene80821:intron 20.0%
!!! TTTTTTTCCTTAAATAGAGA+AGG - chr6.2:82352131-82352150 MS.gene80821:intron 20.0%
! AAACAAATTCATGTTAAGAG+TGG - chr6.2:82355933-82355952 MS.gene80821:intron 25.0%
! AATGCACACATTTAACATAT+TGG + chr6.2:82355877-82355896 None:intergenic 25.0%
! AATTGGAGATTTCATATTGA+CGG + chr6.2:82351564-82351583 None:intergenic 25.0%
! ACATTAATCTATTAGTTCGT+TGG - chr6.2:82352803-82352822 MS.gene80821:intron 25.0%
! AGCTATATAGATAAATTGGT+TGG - chr6.2:82355444-82355463 MS.gene80821:intron 25.0%
! AGTATATATGATTCCTTAAC+AGG + chr6.2:82354330-82354349 None:intergenic 25.0%
! AGTTTAACCTTCTCTATTTA+AGG + chr6.2:82352141-82352160 None:intergenic 25.0%
! ATAAGATCATATACTCATAC+TGG - chr6.2:82355652-82355671 MS.gene80821:intron 25.0%
! ATATATCAAGCATAAGAATG+AGG + chr6.2:82350869-82350888 None:intergenic 25.0%
! ATCAAATATTTACAGTCATG+TGG + chr6.2:82351264-82351283 None:intergenic 25.0%
! CACCAATTAAAATGAATTAG+AGG + chr6.2:82355401-82355420 None:intergenic 25.0%
! CCTTAAATACCTTATTAAGA+TGG - chr6.2:82353760-82353779 MS.gene80821:CDS 25.0%
! CTTGAAAATGTATATGAGAA+TGG - chr6.2:82352481-82352500 MS.gene80821:intron 25.0%
! GTAGAGCTATATAGATAAAT+TGG - chr6.2:82355440-82355459 MS.gene80821:intron 25.0%
! GTCATCTCTTAATTCTTATT+AGG + chr6.2:82351126-82351145 None:intergenic 25.0%
! GTTACCTGAAATTAAGTTAA+GGG - chr6.2:82352550-82352569 MS.gene80821:CDS 25.0%
! TAAGGAAAAAAAAATTGGCT+CGG + chr6.2:82352123-82352142 None:intergenic 25.0%
! TACTTATTTCCAACTAACTT+TGG - chr6.2:82353714-82353733 MS.gene80821:CDS 25.0%
! TCATATGAAAATGGATCAAA+AGG + chr6.2:82352361-82352380 None:intergenic 25.0%
! TCTATAGTACAACTAAAAGT+GGG + chr6.2:82353788-82353807 None:intergenic 25.0%
! TGTACTATAGACTATGAAAT+AGG - chr6.2:82353797-82353816 MS.gene80821:CDS 25.0%
! TGTAGTATTACTTTACTTTG+TGG - chr6.2:82355350-82355369 MS.gene80821:intron 25.0%
! TGTTACCTGAAATTAAGTTA+AGG - chr6.2:82352549-82352568 MS.gene80821:CDS 25.0%
! TTAAAAAGACCAAAGTTAGT+TGG + chr6.2:82353726-82353745 None:intergenic 25.0%
! TTGTAACTCTAACTATCTAA+GGG + chr6.2:82351955-82351974 None:intergenic 25.0%
! TTGTACACTTCATGATAATT+AGG + chr6.2:82354417-82354436 None:intergenic 25.0%
! TTTGTAACTCTAACTATCTA+AGG + chr6.2:82351956-82351975 None:intergenic 25.0%
!! ACTTCAAATATGTATGCTTT+TGG + chr6.2:82351060-82351079 None:intergenic 25.0%
!! ATAGGGTAAATGATTTTTGT+TGG - chr6.2:82354192-82354211 MS.gene80821:intron 25.0%
!! CCATCTTAATAAGGTATTTA+AGG + chr6.2:82353763-82353782 None:intergenic 25.0%
!! CTAGCAATATTTTCTATAGA+TGG + chr6.2:82356224-82356243 None:intergenic 25.0%
!! TAGCTCTACAAATTTAGAAA+TGG + chr6.2:82355429-82355448 None:intergenic 25.0%
!!! GTCCTCTAATTCATTTTAAT+TGG - chr6.2:82355396-82355415 MS.gene80821:intron 25.0%
!!! TAAGCCTTAAATATTTTGAC+AGG - chr6.2:82352969-82352988 MS.gene80821:intron 25.0%
!!! TAGTCCCTTAACTTTATTTT+AGG - chr6.2:82352294-82352313 MS.gene80821:intron 25.0%
!!! TGGTCTTGTAAATATCAAAA+GGG - chr6.2:82352771-82352790 MS.gene80821:intron 25.0%
!!! TTGGTCTTGTAAATATCAAA+AGG - chr6.2:82352770-82352789 MS.gene80821:intron 25.0%
AAAAACCTCTTAATCCTATC+AGG - chr6.2:82352201-82352220 MS.gene80821:intron 30.0%
AAAACCCACTTATTATGGAA+CGG - chr6.2:82354161-82354180 MS.gene80821:intron 30.0%
AAAGGAAATCCATTTGCATT+TGG + chr6.2:82356317-82356336 None:intergenic 30.0%
AAATGTGAGTCATTAGTAGA+TGG + chr6.2:82355331-82355350 None:intergenic 30.0%
AAGGTTGTTTAATATGGATC+CGG + chr6.2:82351467-82351486 None:intergenic 30.0%
AATTATAGGTGATCAAACTG+TGG - chr6.2:82356130-82356149 MS.gene80821:CDS 30.0%
AATTTAGTCGCTAACTGTTA+GGG - chr6.2:82352040-82352059 MS.gene80821:intron 30.0%
AGTTTCATACCTGTGAAAAT+TGG + chr6.2:82351904-82351923 None:intergenic 30.0%
ATACACAAAATGGAATGAGT+TGG - chr6.2:82355473-82355492 MS.gene80821:intron 30.0%
ATATATACCTCTCTTAGCTT+TGG + chr6.2:82354579-82354598 None:intergenic 30.0%
ATATCTCTCTTAATCTGAGA+CGG + chr6.2:82353910-82353929 None:intergenic 30.0%
ATGTATAGTAGTTTCTTGCA+TGG + chr6.2:82350820-82350839 None:intergenic 30.0%
CTAAAAAATAAGCCTATGAC+AGG - chr6.2:82352932-82352951 MS.gene80821:intron 30.0%
CTATAGTACAACTAAAAGTG+GGG + chr6.2:82353787-82353806 None:intergenic 30.0%
CTGTCCTGTCAAAATATTTA+AGG + chr6.2:82352976-82352995 None:intergenic 30.0%
GTATATGAGAATGGACAAAA+AGG - chr6.2:82352490-82352509 MS.gene80821:intron 30.0%
GTCTATAGTACAACTAAAAG+TGG + chr6.2:82353789-82353808 None:intergenic 30.0%
GTTTCATACCTGTGAAAATT+GGG + chr6.2:82351903-82351922 None:intergenic 30.0%
TAATTTAGTCGCTAACTGTT+AGG - chr6.2:82352039-82352058 MS.gene80821:intron 30.0%
TACAACTCTCATTCAACAAA+AGG - chr6.2:82351869-82351888 MS.gene80821:CDS 30.0%
TAGTCCCTTAACTTAATTTC+AGG + chr6.2:82352557-82352576 None:intergenic 30.0%
TATTCTTGTAGTTGACATGT+TGG - chr6.2:82355723-82355742 MS.gene80821:intron 30.0%
TGCTCTTATGATACATGTTA+AGG - chr6.2:82354877-82354896 MS.gene80821:intron 30.0%
TTAATGCAAGCTTCATAGTT+AGG + chr6.2:82351633-82351652 None:intergenic 30.0%
TTACATTTACCTAAGTAGGT+TGG + chr6.2:82352227-82352246 None:intergenic 30.0%
TTAGCATAAAGATAGACTCT+AGG + chr6.2:82354645-82354664 None:intergenic 30.0%
TTCAATTCTCCAGAAAGTAA+TGG + chr6.2:82353384-82353403 None:intergenic 30.0%
TTCTTATGCAAACATAGACA+AGG + chr6.2:82352447-82352466 None:intergenic 30.0%
TTTGTTGAATGAGAGTTGTA+AGG + chr6.2:82351869-82351888 None:intergenic 30.0%
! AACATTGCTTTGTTAACTCA+AGG - chr6.2:82355522-82355541 MS.gene80821:intron 30.0%
! AGAATCATCAAAAACCCTTT+TGG + chr6.2:82350670-82350689 None:intergenic 30.0%
! ATAAGCATTTTTGCCTGTTA+AGG - chr6.2:82354314-82354333 MS.gene80821:intron 30.0%
! ATGCTTTTAAATAGGCTAGT+AGG - chr6.2:82352876-82352895 MS.gene80821:intron 30.0%
! CTTAATTTCAGGTAACAGTT+TGG + chr6.2:82352546-82352565 None:intergenic 30.0%
! CTTTTCTATCTCTAAACTTC+CGG + chr6.2:82352005-82352024 None:intergenic 30.0%
!! AATGCAAATGGATTTCCTTT+TGG - chr6.2:82356317-82356336 MS.gene80821:intron 30.0%
!! CATTTTATAGCTTCTAGCTA+GGG - chr6.2:82353857-82353876 MS.gene80821:CDS 30.0%
!! CTTACCACTCTTTTAAGAAA+AGG + chr6.2:82350967-82350986 None:intergenic 30.0%
!! TCATTTTATAGCTTCTAGCT+AGG - chr6.2:82353856-82353875 MS.gene80821:CDS 30.0%
!! TGAATTAGATTTGTTGCAGT+CGG + chr6.2:82355902-82355921 None:intergenic 30.0%
!!! CTGTCATAGGCTTATTTTTT+AGG + chr6.2:82352934-82352953 None:intergenic 30.0%
AACTCTAACTATCTAAGGGT+TGG + chr6.2:82351951-82351970 None:intergenic 35.0%
AAGATGGTCCAATGTTAAAC+CGG - chr6.2:82351445-82351464 MS.gene80821:intron 35.0%
ACATAGTGAAGGAAAGAACT+GGG - chr6.2:82353352-82353371 MS.gene80821:intron 35.0%
ACCAAGCAATAATGCACAAA+TGG - chr6.2:82356250-82356269 MS.gene80821:intron 35.0%
ACGCTAATTGCACATGTTAA+AGG + chr6.2:82355009-82355028 None:intergenic 35.0%
AGCTTTCCATCACAAAATGA+TGG - chr6.2:82354500-82354519 MS.gene80821:intron 35.0%
AGTTCACAGATAATTCTAGC+TGG - chr6.2:82353445-82353464 MS.gene80821:intron 35.0%
ATATGGATCCGGTTTAACAT+TGG + chr6.2:82351456-82351475 None:intergenic 35.0%
ATCTCGTACAAAACTAGTAG+AGG - chr6.2:82355969-82355988 MS.gene80821:intron 35.0%
ATTAAGAATCCAAGCACCAA+GGG - chr6.2:82351831-82351850 MS.gene80821:CDS 35.0%
ATTCTACTACCTGTGAAAGT+TGG + chr6.2:82353162-82353181 None:intergenic 35.0%
CACATGATGAAAATGAGAAC+TGG - chr6.2:82353307-82353326 MS.gene80821:intron 35.0%
CAGTTAATGTGCAAAACATG+CGG - chr6.2:82350920-82350939 MS.gene80821:CDS 35.0%
CGGAAGTTTAGAGATAGAAA+AGG - chr6.2:82352003-82352022 MS.gene80821:intron 35.0%
GAATTGAACCTTACTATGAG+AGG - chr6.2:82353396-82353415 MS.gene80821:intron 35.0%
GATCATATACTCATACTGGT+TGG - chr6.2:82355656-82355675 MS.gene80821:intron 35.0%
GATTTCATTCGTTTCTCGTT+TGG + chr6.2:82350714-82350733 None:intergenic 35.0%
GCATATTGGATTCAGAAGAA+TGG + chr6.2:82355225-82355244 None:intergenic 35.0%
GTACTTGAGCCAAATGAATA+AGG - chr6.2:82355292-82355311 MS.gene80821:CDS 35.0%
GTTAGCGACTAAATTAGAGA+TGG + chr6.2:82352035-82352054 None:intergenic 35.0%
GTTGAAACTTGAAATAGTGC+CGG - chr6.2:82351983-82352002 MS.gene80821:intron 35.0%
TAATGAAGGTGACCTATTGA+TGG + chr6.2:82351815-82351834 None:intergenic 35.0%
TACATAGTGAAGGAAAGAAC+TGG - chr6.2:82353351-82353370 MS.gene80821:intron 35.0%
TCAACAAGACTTATGCTTAG+AGG + chr6.2:82353204-82353223 None:intergenic 35.0%
TTCAGAAGAATGGTAAACTG+AGG + chr6.2:82355215-82355234 None:intergenic 35.0%
TTGAATGAGAGTTGTAAGGT+TGG + chr6.2:82351865-82351884 None:intergenic 35.0%
TTGTGGTATGAATAGCTATG+CGG + chr6.2:82351597-82351616 None:intergenic 35.0%
! AACTTGTTTCTCATGGGTTA+GGG - chr6.2:82351090-82351109 MS.gene80821:intron 35.0%
! AAGATAGACTCTAGGAAATG+TGG + chr6.2:82354637-82354656 None:intergenic 35.0%
! AATGAGTTGGAGGAAATTGA+TGG - chr6.2:82355486-82355505 MS.gene80821:intron 35.0%
! ATGGGAGTAATCAAAGTGTT+AGG - chr6.2:82353508-82353527 MS.gene80821:CDS 35.0%
! CAAAACATGCGGAACTTTTT+AGG - chr6.2:82350931-82350950 MS.gene80821:intron 35.0%
! CAAAGTGTTAGGATTCAAGA+AGG - chr6.2:82353519-82353538 MS.gene80821:CDS 35.0%
! CAGATAATTCTAGCTGGATA+AGG - chr6.2:82353451-82353470 MS.gene80821:intron 35.0%
! CAGTTCTCATTTTCATCATG+TGG + chr6.2:82353309-82353328 None:intergenic 35.0%
! CATATTGGTCATATCGGTTA+AGG + chr6.2:82355862-82355881 None:intergenic 35.0%
! GACGACGAAGAGTATAAATT+CGG + chr6.2:82353075-82353094 None:intergenic 35.0%
! GGAACCTTTTCTTAAAAGAG+TGG - chr6.2:82350960-82350979 MS.gene80821:intron 35.0%
! TGAAATCAGATTTTGGGCAT+GGG - chr6.2:82355107-82355126 MS.gene80821:intron 35.0%
! TTGGAGAAGCATACACAAAA+TGG - chr6.2:82355463-82355482 MS.gene80821:intron 35.0%
!! ACCACAATCTCTAGCTTTAT+AGG + chr6.2:82353270-82353289 None:intergenic 35.0%
!! ATCTCTAGCTTTATAGGGTA+AGG + chr6.2:82353264-82353283 None:intergenic 35.0%
!! CCACAATCTCTAGCTTTATA+GGG + chr6.2:82353269-82353288 None:intergenic 35.0%
!! GAAGACTTGTTGGAACAATT+TGG + chr6.2:82353242-82353261 None:intergenic 35.0%
!! GTGGTTAACTTGTTTCTCAT+GGG - chr6.2:82351084-82351103 MS.gene80821:intron 35.0%
!! TAACTTGTTTCTCATGGGTT+AGG - chr6.2:82351089-82351108 MS.gene80821:intron 35.0%
!! TGTGGTTAACTTGTTTCTCA+TGG - chr6.2:82351083-82351102 MS.gene80821:intron 35.0%
!! TTTGTTGTTAAGGATCATCG+TGG - chr6.2:82353555-82353574 MS.gene80821:CDS 35.0%
!!! TAGGTGAAGTTGGTTTTTTG+TGG + chr6.2:82351614-82351633 None:intergenic 35.0%
!!! TATTTTGACAGGACAGACTT+AGG - chr6.2:82352980-82352999 MS.gene80821:intron 35.0%
AAACATCATCCACCAATGCT+TGG - chr6.2:82354438-82354457 MS.gene80821:intron 40.0%
AACTCTACGATTAGTAAGGG+TGG + chr6.2:82353038-82353057 None:intergenic 40.0%
AACTTCGTTCCAACTTTCAC+AGG - chr6.2:82353150-82353169 MS.gene80821:intron 40.0%
AAGTGGGGACCATCTTAATA+AGG + chr6.2:82353772-82353791 None:intergenic 40.0%
ACCACAACACCAAATGCAAA+TGG - chr6.2:82356305-82356324 MS.gene80821:intron 40.0%
ACTCTACGATTAGTAAGGGT+GGG + chr6.2:82353037-82353056 None:intergenic 40.0%
ACTGTTGCTGGATGATTGTT+TGG + chr6.2:82356164-82356183 None:intergenic 40.0%
AGGTCGAGTTAGACTTTGTA+AGG + chr6.2:82353006-82353025 None:intergenic 40.0%
AGTAAGGGTGGGAATAGATT+AGG + chr6.2:82353026-82353045 None:intergenic 40.0%
AGTGCATACGAAGCAAAAGA+AGG + chr6.2:82350744-82350763 None:intergenic 40.0%
ATAGGGTAAGGAAGACTTGT+TGG + chr6.2:82353252-82353271 None:intergenic 40.0%
ATCACAAAATGATGGCCAAG+GGG - chr6.2:82354508-82354527 MS.gene80821:intron 40.0%
ATTTGGTTAGGTGAGTGAAG+AGG - chr6.2:82351756-82351775 MS.gene80821:intron 40.0%
CAATTCCACCTCTCATAGTA+AGG + chr6.2:82353407-82353426 None:intergenic 40.0%
CATACCTGTGAAAATTGGGA+GGG + chr6.2:82351899-82351918 None:intergenic 40.0%
CATCACAAAATGATGGCCAA+GGG - chr6.2:82354507-82354526 MS.gene80821:intron 40.0%
CATCTTTCCCTATCTTCTCT+AGG + chr6.2:82354479-82354498 None:intergenic 40.0%
CATTAAGAATCCAAGCACCA+AGG - chr6.2:82351830-82351849 MS.gene80821:CDS 40.0%
CCCTATAAAGCTAGAGATTG+TGG - chr6.2:82353266-82353285 MS.gene80821:intron 40.0%
CTAGAGAAGATAGGGAAAGA+TGG - chr6.2:82354477-82354496 MS.gene80821:intron 40.0%
CTAGAGATTGTGGTACTTGA+TGG - chr6.2:82353276-82353295 MS.gene80821:intron 40.0%
GATAAGGAGCAGGAAGTTTA+GGG - chr6.2:82353467-82353486 MS.gene80821:intron 40.0%
GCCATTTGTGCATTATTGCT+TGG + chr6.2:82356254-82356273 None:intergenic 40.0%
GCTTCATAGTTAGGTGAAGT+TGG + chr6.2:82351624-82351643 None:intergenic 40.0%
GGCAACTCTACGATTAGTAA+GGG + chr6.2:82353041-82353060 None:intergenic 40.0%
GGTGCTTGGATTCTTAATGA+AGG + chr6.2:82351829-82351848 None:intergenic 40.0%
GTGAACTCTATGTCTCCAAT+TGG + chr6.2:82353432-82353451 None:intergenic 40.0%
TATGTCTCTATAGAGCGATC+TGG + chr6.2:82352077-82352096 None:intergenic 40.0%
TATGTTGTTGCTACTGTTGC+TGG + chr6.2:82356176-82356195 None:intergenic 40.0%
TCATACCTGTGAAAATTGGG+AGG + chr6.2:82351900-82351919 None:intergenic 40.0%
TGAACCCATTAATGTCCCTA+AGG + chr6.2:82356391-82356410 None:intergenic 40.0%
TGATACTCCAAAGCTAAGAG+AGG - chr6.2:82354569-82354588 MS.gene80821:intron 40.0%
TGCATCTGTGTCAAATGTCA+TGG + chr6.2:82351005-82351024 None:intergenic 40.0%
TGGCAACTCTACGATTAGTA+AGG + chr6.2:82353042-82353061 None:intergenic 40.0%
TTGAACCTTACTATGAGAGG+TGG - chr6.2:82353399-82353418 MS.gene80821:intron 40.0%
TTGCAGTTATGGTGAGTCAT+GGG - chr6.2:82353490-82353509 MS.gene80821:intron 40.0%
TTGGAACGAAGTTATCTCAG+TGG + chr6.2:82353143-82353162 None:intergenic 40.0%
! ATGCAATGACTTGTGACATG+GGG - chr6.2:82355165-82355184 MS.gene80821:intron 40.0%
! CACAAAATGGAATGAGTTGG+AGG - chr6.2:82355476-82355495 MS.gene80821:intron 40.0%
! CATGCAATGACTTGTGACAT+GGG - chr6.2:82355164-82355183 MS.gene80821:intron 40.0%
! CTGAAATCAGATTTTGGGCA+TGG - chr6.2:82355106-82355125 MS.gene80821:intron 40.0%
! GAAATCAGATTTTGGGCATG+GGG - chr6.2:82355108-82355127 MS.gene80821:intron 40.0%
! GAAGTTTAGGGTTGCAGTTA+TGG - chr6.2:82353479-82353498 MS.gene80821:intron 40.0%
! TAAGGCTTAAGCATTGTCAG+CGG + chr6.2:82352958-82352977 None:intergenic 40.0%
!! GACTGAGGCATTTGTTGTTA+AGG - chr6.2:82353545-82353564 MS.gene80821:CDS 40.0%
!! TCCATTTGCATTTGGTGTTG+TGG + chr6.2:82356309-82356328 None:intergenic 40.0%
!! TGCATTTGGTGTTGTGGTAT+AGG + chr6.2:82356303-82356322 None:intergenic 40.0%
ACATGGGGAGCAAGATCTAT+AGG - chr6.2:82355180-82355199 MS.gene80821:CDS 45.0%
ACCCACTTATTATGGAACGG+AGG - chr6.2:82354164-82354183 MS.gene80821:intron 45.0%
AGAGGTGGAATTGCACCAAT+TGG - chr6.2:82353414-82353433 MS.gene80821:intron 45.0%
AGTAGAATACTCGACGCTGA+AGG - chr6.2:82353174-82353193 MS.gene80821:intron 45.0%
AGTCGCTAACTGTTAGGGAT+GGG - chr6.2:82352045-82352064 MS.gene80821:intron 45.0%
ATGGAACGGAGGGAGTAATA+GGG - chr6.2:82354175-82354194 MS.gene80821:intron 45.0%
CAGGCCTTAGGGACATTAAT+GGG - chr6.2:82356384-82356403 MS.gene80821:CDS 45.0%
CCACACAAGACATGTTGTAG+TGG - chr6.2:82355689-82355708 MS.gene80821:intron 45.0%
CCACTACAACATGTCTTGTG+TGG + chr6.2:82355692-82355711 None:intergenic 45.0%
CCATCACAAAATGATGGCCA+AGG - chr6.2:82354506-82354525 MS.gene80821:intron 45.0%
CCCACTTATTATGGAACGGA+GGG - chr6.2:82354165-82354184 MS.gene80821:intron 45.0%
CCCTCCGTTCCATAATAAGT+GGG + chr6.2:82354168-82354187 None:intergenic 45.0%
GAAGAGGTGGATAGAGCAAT+TGG - chr6.2:82351772-82351791 MS.gene80821:CDS 45.0%
GAAGGTGACCTATTGATGGA+AGG + chr6.2:82351811-82351830 None:intergenic 45.0%
GAATGGTAAACTGAGGTCCA+CGG + chr6.2:82355208-82355227 None:intergenic 45.0%
GCTTTCCACCTTCCATCAAT+AGG - chr6.2:82351800-82351819 MS.gene80821:CDS 45.0%
GGATAAGGAGCAGGAAGTTT+AGG - chr6.2:82353466-82353485 MS.gene80821:intron 45.0%
GGGAAGAGACCATTACTTTC+TGG - chr6.2:82353372-82353391 MS.gene80821:intron 45.0%
GTTGCAGTTATGGTGAGTCA+TGG - chr6.2:82353489-82353508 MS.gene80821:intron 45.0%
TAGTCGCTAACTGTTAGGGA+TGG - chr6.2:82352044-82352063 MS.gene80821:intron 45.0%
TATGCGGAGACTACTGCAAT+TGG + chr6.2:82351581-82351600 None:intergenic 45.0%
TATGGAACGGAGGGAGTAAT+AGG - chr6.2:82354174-82354193 MS.gene80821:intron 45.0%
TCAGGCCTTAGGGACATTAA+TGG - chr6.2:82356383-82356402 MS.gene80821:CDS 45.0%
TCCCTCCGTTCCATAATAAG+TGG + chr6.2:82354169-82354188 None:intergenic 45.0%
TGGGGATGTCTGATAGAATG+TGG - chr6.2:82355126-82355145 MS.gene80821:intron 45.0%
! AAGGTTGGTTGTTGATCCCT+TGG + chr6.2:82351850-82351869 None:intergenic 45.0%
! AGCAAGATCTATAGGTACCG+TGG - chr6.2:82355188-82355207 MS.gene80821:CDS 45.0%
! ATTCTAGCTGGATAAGGAGC+AGG - chr6.2:82353457-82353476 MS.gene80821:intron 45.0%
! CCTTGGCCATCATTTTGTGA+TGG + chr6.2:82354509-82354528 None:intergenic 45.0%
! CTTTCCCTCCCAATTTTCAC+AGG - chr6.2:82351892-82351911 MS.gene80821:CDS 45.0%
! GATTCAAGAAGGCATGACTG+AGG - chr6.2:82353530-82353549 MS.gene80821:CDS 45.0%
! GCATGCAATGACTTGTGACA+TGG - chr6.2:82355163-82355182 MS.gene80821:intron 45.0%
! GTTGGCCTGATAGGATTAAG+AGG + chr6.2:82352209-82352228 None:intergenic 45.0%
!! GCGGAACTTTTTAGGAGCTT+TGG - chr6.2:82350939-82350958 MS.gene80821:intron 45.0%
!! GGGACATTAATGGGTTCACA+AGG - chr6.2:82356393-82356412 MS.gene80821:CDS 45.0%
!! TTTCTCATGGGTTAGGGTCT+GGG - chr6.2:82351096-82351115 MS.gene80821:intron 45.0%
!!! GGATTTCCTTTTGGCTTCAC+AGG - chr6.2:82356326-82356345 MS.gene80821:intron 45.0%
!!! ATATTTTATTAAAAATAAGA+TGG - chr6.2:82351429-82351448 MS.gene80821:intron 5.0%
!!! ATTCATTTTTTTATTAAAAA+TGG + chr6.2:82351377-82351396 None:intergenic 5.0%
CAATGCTTGGCGATGATGTG+TGG - chr6.2:82354451-82354470 MS.gene80821:intron 50.0%
CACAAATGGCAAGCAGTGAG+TGG - chr6.2:82356264-82356283 MS.gene80821:intron 50.0%
CACACATCATCGCCAAGCAT+TGG + chr6.2:82354453-82354472 None:intergenic 50.0%
CACAGGCTCACAATCAGATG+AGG - chr6.2:82356343-82356362 MS.gene80821:CDS 50.0%
CCTATCAGGCCAACCTACTT+AGG - chr6.2:82352215-82352234 MS.gene80821:intron 50.0%
GATGAGGACATGACACCTTC+AGG - chr6.2:82356359-82356378 MS.gene80821:CDS 50.0%
GATGGCCAAGGGGATCAAAA+CGG - chr6.2:82354518-82354537 MS.gene80821:intron 50.0%
GGTGACCTATTGATGGAAGG+TGG + chr6.2:82351808-82351827 None:intergenic 50.0%
TGGTTAGGTGAGTGAAGAGG+TGG - chr6.2:82351759-82351778 MS.gene80821:intron 50.0%
TGTGAGCCTGTGAAGCCAAA+AGG + chr6.2:82356335-82356354 None:intergenic 50.0%
TGTGGCGCCTAGAGAAGATA+GGG - chr6.2:82354469-82354488 MS.gene80821:intron 50.0%
TTGGCTCAAGTACTCTCTGC+TGG + chr6.2:82355285-82355304 None:intergenic 50.0%
! ACCTTCAGGTTCAGGCCTTA+GGG - chr6.2:82356373-82356392 MS.gene80821:CDS 50.0%
! GACATGACACCTTCAGGTTC+AGG - chr6.2:82356365-82356384 MS.gene80821:CDS 50.0%
!! ACATCATCGCCAAGCATTGG+TGG + chr6.2:82354450-82354469 None:intergenic 50.0%
!! CCTAAGTAGGTTGGCCTGAT+AGG + chr6.2:82352218-82352237 None:intergenic 50.0%
!! GTTGTTGATCCCTTGGTGCT+TGG + chr6.2:82351843-82351862 None:intergenic 50.0%
!! GTTTCTCATGGGTTAGGGTC+TGG - chr6.2:82351095-82351114 MS.gene80821:intron 50.0%
!! TTCTCATGGGTTAGGGTCTG+GGG - chr6.2:82351097-82351116 MS.gene80821:intron 50.0%
!! TTGCACCGTTTTGATCCCCT+TGG + chr6.2:82354526-82354545 None:intergenic 50.0%
CATTGTCAGCGGCCTGTCAT+AGG + chr6.2:82352947-82352966 None:intergenic 55.0%
GTGTGGCGCCTAGAGAAGAT+AGG - chr6.2:82354468-82354487 MS.gene80821:intron 55.0%
TCCCTAAGGCCTGAACCTGA+AGG + chr6.2:82356377-82356396 None:intergenic 55.0%
! CACCTTCAGGTTCAGGCCTT+AGG - chr6.2:82356372-82356391 MS.gene80821:CDS 55.0%
!! TGGCTCGGTCTGTCTGTCAT+AGG + chr6.2:82352108-82352127 None:intergenic 55.0%
!! TCATGGGTTAGGGTCTGGGG+TGG - chr6.2:82351100-82351119 MS.gene80821:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 82350660 82356424 82350660 ID=MS.gene80821
chr6.2 mRNA 82350660 82356424 82350660 ID=MS.gene80821.t1;Parent=MS.gene80821
chr6.2 exon 82356330 82356424 82356330 ID=MS.gene80821.t1.exon1;Parent=MS.gene80821.t1
chr6.2 CDS 82356330 82356424 82356330 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2 exon 82356103 82356178 82356103 ID=MS.gene80821.t1.exon2;Parent=MS.gene80821.t1
chr6.2 CDS 82356103 82356178 82356103 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2 exon 82355171 82355318 82355171 ID=MS.gene80821.t1.exon3;Parent=MS.gene80821.t1
chr6.2 CDS 82355171 82355318 82355171 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2 exon 82353502 82353912 82353502 ID=MS.gene80821.t1.exon4;Parent=MS.gene80821.t1
chr6.2 CDS 82353502 82353912 82353502 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2 exon 82352494 82352654 82352494 ID=MS.gene80821.t1.exon5;Parent=MS.gene80821.t1
chr6.2 CDS 82352494 82352654 82352494 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2 exon 82351771 82351968 82351771 ID=MS.gene80821.t1.exon6;Parent=MS.gene80821.t1
chr6.2 CDS 82351771 82351968 82351771 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2 exon 82351541 82351640 82351541 ID=MS.gene80821.t1.exon7;Parent=MS.gene80821.t1
chr6.2 CDS 82351541 82351640 82351541 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2 exon 82350660 82350946 82350660 ID=MS.gene80821.t1.exon8;Parent=MS.gene80821.t1
chr6.2 CDS 82350660 82350946 82350660 ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
Gene Sequence

>MS.gene80821

ATGGCTACCAAAAGGGTTTTTGATGATTCTAATGATAAAGATCAAGACAATCCAAACGAGAAACGAATGAAATCTACTAGACCTTCTTTTGCTTCGTATGCACTTCTTTTCTAATCTACTTTCTAGCTCTTTTCTTGATAATCTTTAATACGTTGATCCATGCAAGAAACTACTATACATTCTATGCTTCAATTTTTTTTTAATAACCTCATTCTTATGCTTGATATATTGAATTCTTCTTGACAGTGTAATAGAAACAGCAGTTAATGTGCAAAACATGCGGAACTTTTTAGGAGCTTTGGAACCTTTTCTTAAAAGAGTGGTAAGTCAAGTTAAACTTTACCATGACATTTGACACAGATGCATACATATTTGAAGTTTTTTTTTTGTTTTGTTTCCAAAAGCATACATATTTGAAGTTAATGTGGTTAACTTGTTTCTCATGGGTTAGGGTCTGGGGTGGCCTAATAAGAATTAAGAGATGACCCAACAAACAATATATTTGTATAATATACAACATTACATTATCTGATATCAATATAGCTTATGAAAATTGAGGGTATATCATAGTATATTGTACAAAAATATTGTTGTTAGGTCACCACATGACTGTAAATATTTGATATTATCTTAAAATTTAAGGCGGTTTGATATGATTCTCTAAAAAATGGTTTAAATATAGACCTTTACCATTTTTAAGAAAATAGACCTTTACCATTTTTAATAAAAAAATGAATTTTATAATAATGTAAAATAGAGATTAGAAATAATATTTTATTAAAAATAAGATGGTCCAATGTTAAACCGGATCCATATTAAACAACCTTAAAATTTATTTGAGTCTTGAGAATTTTAAAAATTTGTGCTCACTTGTAATTAACTGCAATGTCAACTGTATCAACCGTCAATATGAAATCTCCAATTGCAGTAGTCTCCGCATAGCTATTCATACCACAAAAAACCAACTTCACCTAACTATGAAGCTTGCATTAATTATTTGAATTTGAATACTACAACTAGTCTAAAAATATCGAACATTTGTATTTCTCATTATATAGTTGATTTTCTCATGAAAGCTTACTTTATTATATGATTCATTTGGTTAGGTGAGTGAAGAGGTGGATAGAGCAATTGGAAACTGCTTTCCACCTTCCATCAATAGGTCACCTTCATTAAGAATCCAAGCACCAAGGGATCAACAACCAACCTTACAACTCTCATTCAACAAAAGGCTTTCCCTCCCAATTTTCACAGGTATGAAACTTACATTAGTTACAAGATTTGAATTCCAACCCTTAGATAGTTAGAGTTACAAAAACAAAAGTTGAAACTTGAAATAGTGCCGGAAGTTTAGAGATAGAAAAGGCAAAATCCATCTCTAATTTAGTCGCTAACTGTTAGGGATGGGAATAAGCCAGATCGCTCTATAGAGACATACGACATAGCCTATGACAGACAGACCGAGCCAATTTTTTTTTCCTTAAATAGAGAAGGTTAAACTTTTTCGAAGCCTATTTAACTAAAAAGTCACATGTCATATAAAAAACCTCTTAATCCTATCAGGCCAACCTACTTAGGTAAATGTAAATAATATTGTTTATTACTAATATTAATTGTAGACAAAATTACACTTTTAGTCCCTTAACTTTATTTTAGGTAACAATTTGGTCCTTTATCTTTTTTTCATTTCAATTTTGTCCTTTTGATCCATTTTCATATGAATTTTTAAGCTTAAAATTCATGATTTTATTTTCTAATGGTCTTTCAGTCTTCAAATCTATGATCCTTGTCTATGTTTGCATAAGAATATTAAATTTGAAGCTTGAAAATGTATATGAGAATGGACAAAAAGGACCAAATTGAAATGAAAAAAAGATAAAGGACCAAACTGTTACCTGAAATTAAGTTAAGGGACTAAAAGTGTAATTTTGCCTTAATTGTATTATAATTTGTACTTTTAATTAAATTGTAAATTTATTAGCCTTTTTAGTAATTTAAGTTTATTAGTATACATTATTTTTTTAGTAAATTTAAGTATATTATTATAAACTATAATTGAGATATGATATAATATACAATCAAATTCTCTAAATAGTCTTTTTTTTTTTTTTTGGTCTTGTAAATATCAAAAGGGAGTTTAATCACATTAATCTATTAGTTCGTTGGTCTATTCAAACTCAGATCACATTACTTATTTAAAGATGTTCATATGAAACATGCTTTTAAATAGGCTAGTAGGTCACATCAGACTTTCAAGAGATCAGACTCAAGCCTAAAAAATAAGCCTATGACAGGCCGCTGACAATGCTTAAGCCTTAAATATTTTGACAGGACAGACTTAGGCCTTACAAAGTCTAACTCGACCTAATCTATTCCCACCCTTACTAATCGTAGAGTTGCCAAATTTGATTACCGAATTTATACTCTTCGTCGTCATTAAATTTTTCTTGTAGTAATCAAGAATACTCGACGCTGAGTTACCACTGAGATAACTTCGTTCCAACTTTCACAGGTAGTAGAATACTCGACGCTGAAGGTAAGCCTCTAAGCATAAGTCTTGTTGACAAAACAAACAACAACCAAATTGTTCCAACAAGTCTTCCTTACCCTATAAAGCTAGAGATTGTGGTACTTGATGGAGATTTTCCACATGATGAAAATGAGAACTGGACTAGTGAAGAATTCAATAAATACATAGTGAAGGAAAGAACTGGGAAGAGACCATTACTTTCTGGAGAATTGAACCTTACTATGAGAGGTGGAATTGCACCAATTGGAGACATAGAGTTCACAGATAATTCTAGCTGGATAAGGAGCAGGAAGTTTAGGGTTGCAGTTATGGTGAGTCATGGGAGTAATCAAAGTGTTAGGATTCAAGAAGGCATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATGTAAGTTTTATTTTCATAATTCATAAACTTGGTATAGTATAAACAATAATATCTTTAACATGACTTAATTTTTTGTAGGATGATATATTATTGCAATATTGATTGGAATATATTTGATGACAATGACTAAATACTTATTTCCAACTAACTTTGGTCTTTTTAAATTAGTTCTTACACCCTTAAATACCTTATTAAGATGGTCCCCACTTTTAGTTGTACTATAGACTATGAAATAGGAACGCAATTTATTTTGAGCGTTTGACTAGTCATTCATCATTTTATAGCTTCTAGCTAGGGAATTTAAGTTGTCATTTGTATACTCTTCCGTCTCAGATTAAGAGAGATATTTGCTCATTTCTACATATTAAGAAAAATGTATAAGTCATCAGAGAGAAAAATGATTTTAAGTGTTTTTGTTAAGTATCGGTGTATTCATCATTATCATAAATGTGAAATGAAAAATATGGAATTGAGAGTGATGAAAGTAGTATTAATTAGAATTATAATTGAAAAAAGAATCAATATTGCATTGAAAAGTGAAATGAGTATGTTATTTTGATACAATATTTTTTTTATAAAAAACCCACTTATTATGGAACGGAGGGAGTAATAGGGTAAATGATTTTTGTTGGTGTAGTTTTGTTATTGAGTGTGTAAATATTGTTTATATTTAGTAATTTATGAGTACTTTAAATCTTACTTTGATGTAGTATTAATTTTATGAGTTGCATATAAGCATTTTTGCCTGTTAAGGAATCATATATACTACAAGTTCTTTTTTGAAGTAAGTATTACATGCTATTATTTTGTTTTATTTTTTGACATTGTTTTCCTAATTATCATGAAGTGTACAAAAAACATCATCCACCAATGCTTGGCGATGATGTGTGGCGCCTAGAGAAGATAGGGAAAGATGGAGCTTTCCATCACAAAATGATGGCCAAGGGGATCAAAACGGTGCAAGACTTTCTTAAATTAGCAGTTATTGATACTCCAAAGCTAAGAGAGGTATATATCTTTATAATTAGGGGTGAAAATAAAATAGACTACACCACATTTCCTAGAGTCTATCTTTATGCTAATTTTGTTTAGGATCTATTTATCTAAAAAATCACACTTTAGTTCATAAAAACTCTTTTAGTTCTATTAATATTTTCAATAATTTAAACATATTAAACTACATACACCATTATACAAGATCAATTTCTTTAAAAGATTAAGTTAGACCTCAAATTTGAACTTAAACTTATTGATCTATTAACTCGTTTGTTTATTTAAAGGTCTTGTTAACTTGTGCTCTTATGATACATGTTAAGGAATTCAAAAGTAAAAATTTTATACTGAAAAGAGTAGCTTGAGTACTTTTAAGAAATTGATTAGACGACTTTTGAGATAGAATTACTATATAGTAGTATATATATTTCCTTTAACATGTGCAATTAGCGTTTTCCTTTAAGTAAATATATTAGATTCTTATTTGTGAAGCAATATGAACTTATTACTTTTTTTATTGATGAATTTATCTGAAATCAGATTTTGGGCATGGGGATGTCTGATAGAATGTGGAAAGTCACAATAAAGCATGCAATGACTTGTGACATGGGGAGCAAGATCTATAGGTACCGTGGACCTCAGTTTACCATTCTTCTGAATCCAATATGCAAATTAATTAAAGCTAATATCAATGGACAAGAATTTTCCAGCAGAGAGTACTTGAGCCAAATGAATAAGGTACAATATATTAACCATCTACTAATGACTCACATTTGTAGTATTACTTTACTTTGTGGATTACACTATATGTTAGATATTGGTCCTCTAATTCATTTTAATTGGTGTTATACCATTTCTAAATTTGTAGAGCTATATAGATAAATTGGTTGGAGAAGCATACACAAAATGGAATGAGTTGGAGGAAATTGATGGAGTTTTAAATGATAACATTGCTTTGTTAACTCAAGGTATTTTCAATTAATCATCAATGACTTTTGTTCTCAATAAGCTAAATTATACATACTTTTTTGTCTTGTTCGAAATAACAAATATTAGTTGTTATTTTGTTAATAGAAATAAGATCATATACTCATACTGGTTGGCTTCGTAGCACCACACAAGACATGTTGTAGTGGATAACAATATGTATTCTTGTAGTTGACATGTTGGTGATCGTTGAATTATGATCAGATGAATTAATTTTTAAACTCGGCATTTCATTTTTTTTTTTAAAAATCATAATATATATCGAAATTTTAATCGATCGTCTGAGTTCAATTTAACCTTAACCGATATGACCAATATGTTAAATGTGTGCATTTGCCGACTGCAACAAATCTAATTCAACTTGTGCAAAAAACAAATTCATGTTAAGAGTGGTGAATGAATACAAATCTCGTACAAAACTAGTAGAGGTATTAATCTAAAAAAATATCAACTAGATTGTATATATAGTTCCATTTTATTAAGTATCTAAAAAAGTTTCAATTATGAATTTGACAAATAATTAATTACATTTTTTTTCTACAATGAAATTAATTTTAATATGAACTTAATTATAGGTGATCAAACTGTGGAGCAATATCCAAACAATCATCCAGCAACAGTAGCAACAACATATCATCAGAATCAATATTATGGTGATCCATCTATAGAAAATATTGCTAGCTATGTACCAAGCAATAATGCACAAATGGCAAGCAGTGAGTGGTTATTGAATCAAGCCTATACCACAACACCAAATGCAAATGGATTTCCTTTTGGCTTCACAGGCTCACAATCAGATGAGGACATGACACCTTCAGGTTCAGGCCTTAGGGACATTAATGGGTTCACAAGGCAACTTTAA

Protein sequence

>MS.gene80821.t1

MATKRVFDDSNDKDQDNPNEKRMKSTRPSFASVIETAVNVQNMRNFLGALEPFLKRVVSEEVDRAIGNCFPPSINRSPSLRIQAPRDQQPTLQLSFNKRLSLPIFTGSRILDAEGKPLSISLVDKTNNNQIVPTSLPYPIKLEIVVLDGDFPHDENENWTSEEFNKYIVKERTGKRPLLSGELNLTMRGGIAPIGDIEFTDNSSWIRSRKFRVAVMVSHGSNQSVRIQEGMTEAFVVKDHRGELYKKHHPPMLGDDVWRLEKIGKDGAFHHKMMAKGIKTVQDFLKLAVIDTPKLREILGMGMSDRMWKVTIKHAMTCDMGSKIYRYRGPQFTILLNPICKLIKANINGQEFSSREYLSQMNKSYIDKLVGEAYTKWNELEEIDGVLNDNIALLTQGDQTVEQYPNNHPATVATTYHQNQYYGDPSIENIASYVPSNNAQMASSEWLLNQAYTTTPNANGFPFGFTGSQSDEDMTPSGSGLRDINGFTRQL