AlfalfaGEDB | MS.gene80821

M. sativa cultivar XinJiangDaYe / MS.gene80821

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005516
PFAM: PF07887.14 PF20451.1 PF20452.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80821.t1	RHN52774.1	92.5	493	35	1	1	491	1	493	1.20E-265	925.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80821.t1	Q9C9T2	46.9	480	221	11	1	476	1	450	4.5e-107	389.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80821.t1	A0A396HLL0	92.5	493	35	1	1	491	1	493	8.9e-266	925.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene80821	0.831586	1.54E-55	-1.69E-46
MS.gene049413	MS.gene80821	0.805627	1.22E-49	-1.69E-46
MS.gene049452	MS.gene80821	0.804814	1.80E-49	-1.69E-46
MS.gene049983	MS.gene80821	0.80117	1.02E-48	-1.69E-46
MS.gene050645	MS.gene80821	0.804831	1.79E-49	-1.69E-46
MS.gene050669	MS.gene80821	0.844468	7.42E-59	-1.69E-46
MS.gene050759	MS.gene80821	0.825305	5.04E-54	-1.69E-46
MS.gene050961	MS.gene80821	0.808503	3.00E-50	-1.69E-46
MS.gene050962	MS.gene80821	0.813924	2.00E-51	-1.69E-46
MS.gene051490	MS.gene80821	0.809721	1.64E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80821.t1	MTR_6g083730	90.669	493	36	2	1	491	1	485	0.0	920
MS.gene80821.t1	MTR_8g104510	63.579	475	161	9	1	471	1	467	0.0	599
MS.gene80821.t1	MTR_8g104490	62.346	486	168	12	1	480	1	477	0.0	574
MS.gene80821.t1	MTR_6g083320	92.308	299	21	1	1	297	1	299	0.0	568
MS.gene80821.t1	MTR_6g083320	83.333	132	14	1	360	491	296	419	6.12e-70	229
MS.gene80821.t1	MTR_8g104490	63.789	417	138	10	69	480	4	412	4.11e-179	509
MS.gene80821.t1	MTR_4g128600	46.135	414	203	9	4	412	14	412	2.37e-118	361
MS.gene80821.t1	MTR_4g090970	46.582	395	195	8	2	390	13	397	1.40e-113	348
MS.gene80821.t1	MTR_2g011810	45.202	396	202	7	1	390	12	398	1.12e-112	347
MS.gene80821.t1	MTR_2g450080	41.573	445	233	9	4	440	11	436	1.88e-107	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80821.t1	AT1G73805	50.208	480	205	11	1	476	1	450	2.06e-150	437
MS.gene80821.t1	AT5G57580	47.781	383	183	7	9	385	17	388	4.02e-115	353
MS.gene80821.t1	AT4G25800	46.134	388	191	7	4	385	2	377	8.93e-111	340
MS.gene80821.t1	AT4G25800	46.134	388	191	7	4	385	2	377	8.93e-111	340
MS.gene80821.t1	AT2G18750	38.900	491	271	12	4	475	16	496	1.86e-107	333
MS.gene80821.t1	AT2G18750	38.900	491	271	12	4	475	16	496	1.86e-107	333
MS.gene80821.t1	AT2G18750	38.900	491	271	12	4	475	16	496	1.86e-107	333
MS.gene80821.t1	AT2G24300	42.526	388	214	6	4	387	3	385	1.12e-95	301
MS.gene80821.t1	AT2G24300	42.526	388	214	6	4	387	7	389	1.15e-95	301
MS.gene80821.t1	AT4G31000	40.749	427	230	11	11	425	13	428	2.95e-94	296

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Find 114 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCATCCACCAATGCT+TGG	0.524035	6.2:-82352624	MS.gene80821:CDS
AAAGGAAATCCATTTGCATT+TGG	0.365748	6.2:+82350748	None:intergenic
AACATTGCTTTGTTAACTCA+AGG	0.487994	6.2:-82351540	MS.gene80821:intron
AAGGTTGGTTGTTGATCCCT+TGG	0.434839	6.2:+82355215	None:intergenic
AATGAGTTGGAGGAAATTGA+TGG	0.479528	6.2:-82351576	MS.gene80821:CDS
AATGCAAATGGATTTCCTTT+TGG	0.323071	6.2:-82350745	MS.gene80821:CDS
AATTATAGGTGATCAAACTG+TGG	0.703154	6.2:-82350932	MS.gene80821:intron
ACATAGTGAAGGAAAGAACT+GGG	0.634050	6.2:-82353710	MS.gene80821:CDS
ACATCATCGCCAAGCATTGG+TGG	0.557359	6.2:+82352615	None:intergenic
ACATGGGGAGCAAGATCTAT+AGG	0.460309	6.2:-82351882	MS.gene80821:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCTCTTAATCCTATC+AGG	-	chr6.2:82352201-82352220	MS.gene80821:intron	30.0%
AAAACCCACTTATTATGGAA+CGG	-	chr6.2:82354161-82354180	MS.gene80821:intron	30.0%
AAAGGAAATCCATTTGCATT+TGG	+	chr6.2:82356317-82356336	None:intergenic	30.0%
AAATGTGAGTCATTAGTAGA+TGG	+	chr6.2:82355331-82355350	None:intergenic	30.0%
AAGGTTGTTTAATATGGATC+CGG	+	chr6.2:82351467-82351486	None:intergenic	30.0%
AATTATAGGTGATCAAACTG+TGG	-	chr6.2:82356130-82356149	MS.gene80821:CDS	30.0%
AATTTAGTCGCTAACTGTTA+GGG	-	chr6.2:82352040-82352059	MS.gene80821:intron	30.0%
AGTTTCATACCTGTGAAAAT+TGG	+	chr6.2:82351904-82351923	None:intergenic	30.0%
ATACACAAAATGGAATGAGT+TGG	-	chr6.2:82355473-82355492	MS.gene80821:intron	30.0%
ATATATACCTCTCTTAGCTT+TGG	+	chr6.2:82354579-82354598	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	82350660	82356424	82350660	ID=MS.gene80821
chr6.2	mRNA	82350660	82356424	82350660	ID=MS.gene80821.t1;Parent=MS.gene80821
chr6.2	exon	82356330	82356424	82356330	ID=MS.gene80821.t1.exon1;Parent=MS.gene80821.t1
chr6.2	CDS	82356330	82356424	82356330	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2	exon	82356103	82356178	82356103	ID=MS.gene80821.t1.exon2;Parent=MS.gene80821.t1
chr6.2	CDS	82356103	82356178	82356103	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2	exon	82355171	82355318	82355171	ID=MS.gene80821.t1.exon3;Parent=MS.gene80821.t1
chr6.2	CDS	82355171	82355318	82355171	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2	exon	82353502	82353912	82353502	ID=MS.gene80821.t1.exon4;Parent=MS.gene80821.t1
chr6.2	CDS	82353502	82353912	82353502	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2	exon	82352494	82352654	82352494	ID=MS.gene80821.t1.exon5;Parent=MS.gene80821.t1
chr6.2	CDS	82352494	82352654	82352494	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2	exon	82351771	82351968	82351771	ID=MS.gene80821.t1.exon6;Parent=MS.gene80821.t1
chr6.2	CDS	82351771	82351968	82351771	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2	exon	82351541	82351640	82351541	ID=MS.gene80821.t1.exon7;Parent=MS.gene80821.t1
chr6.2	CDS	82351541	82351640	82351541	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1
chr6.2	exon	82350660	82350946	82350660	ID=MS.gene80821.t1.exon8;Parent=MS.gene80821.t1
chr6.2	CDS	82350660	82350946	82350660	ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1

Gene Sequence

>MS.gene80821

ATGGCTACCAAAAGGGTTTTTGATGATTCTAATGATAAAGATCAAGACAATCCAAACGAGAAACGAATGAAATCTACTAGACCTTCTTTTGCTTCGTATGCACTTCTTTTCTAATCTACTTTCTAGCTCTTTTCTTGATAATCTTTAATACGTTGATCCATGCAAGAAACTACTATACATTCTATGCTTCAATTTTTTTTTAATAACCTCATTCTTATGCTTGATATATTGAATTCTTCTTGACAGTGTAATAGAAACAGCAGTTAATGTGCAAAACATGCGGAACTTTTTAGGAGCTTTGGAACCTTTTCTTAAAAGAGTGGTAAGTCAAGTTAAACTTTACCATGACATTTGACACAGATGCATACATATTTGAAGTTTTTTTTTTGTTTTGTTTCCAAAAGCATACATATTTGAAGTTAATGTGGTTAACTTGTTTCTCATGGGTTAGGGTCTGGGGTGGCCTAATAAGAATTAAGAGATGACCCAACAAACAATATATTTGTATAATATACAACATTACATTATCTGATATCAATATAGCTTATGAAAATTGAGGGTATATCATAGTATATTGTACAAAAATATTGTTGTTAGGTCACCACATGACTGTAAATATTTGATATTATCTTAAAATTTAAGGCGGTTTGATATGATTCTCTAAAAAATGGTTTAAATATAGACCTTTACCATTTTTAAGAAAATAGACCTTTACCATTTTTAATAAAAAAATGAATTTTATAATAATGTAAAATAGAGATTAGAAATAATATTTTATTAAAAATAAGATGGTCCAATGTTAAACCGGATCCATATTAAACAACCTTAAAATTTATTTGAGTCTTGAGAATTTTAAAAATTTGTGCTCACTTGTAATTAACTGCAATGTCAACTGTATCAACCGTCAATATGAAATCTCCAATTGCAGTAGTCTCCGCATAGCTATTCATACCACAAAAAACCAACTTCACCTAACTATGAAGCTTGCATTAATTATTTGAATTTGAATACTACAACTAGTCTAAAAATATCGAACATTTGTATTTCTCATTATATAGTTGATTTTCTCATGAAAGCTTACTTTATTATATGATTCATTTGGTTAGGTGAGTGAAGAGGTGGATAGAGCAATTGGAAACTGCTTTCCACCTTCCATCAATAGGTCACCTTCATTAAGAATCCAAGCACCAAGGGATCAACAACCAACCTTACAACTCTCATTCAACAAAAGGCTTTCCCTCCCAATTTTCACAGGTATGAAACTTACATTAGTTACAAGATTTGAATTCCAACCCTTAGATAGTTAGAGTTACAAAAACAAAAGTTGAAACTTGAAATAGTGCCGGAAGTTTAGAGATAGAAAAGGCAAAATCCATCTCTAATTTAGTCGCTAACTGTTAGGGATGGGAATAAGCCAGATCGCTCTATAGAGACATACGACATAGCCTATGACAGACAGACCGAGCCAATTTTTTTTTCCTTAAATAGAGAAGGTTAAACTTTTTCGAAGCCTATTTAACTAAAAAGTCACATGTCATATAAAAAACCTCTTAATCCTATCAGGCCAACCTACTTAGGTAAATGTAAATAATATTGTTTATTACTAATATTAATTGTAGACAAAATTACACTTTTAGTCCCTTAACTTTATTTTAGGTAACAATTTGGTCCTTTATCTTTTTTTCATTTCAATTTTGTCCTTTTGATCCATTTTCATATGAATTTTTAAGCTTAAAATTCATGATTTTATTTTCTAATGGTCTTTCAGTCTTCAAATCTATGATCCTTGTCTATGTTTGCATAAGAATATTAAATTTGAAGCTTGAAAATGTATATGAGAATGGACAAAAAGGACCAAATTGAAATGAAAAAAAGATAAAGGACCAAACTGTTACCTGAAATTAAGTTAAGGGACTAAAAGTGTAATTTTGCCTTAATTGTATTATAATTTGTACTTTTAATTAAATTGTAAATTTATTAGCCTTTTTAGTAATTTAAGTTTATTAGTATACATTATTTTTTTAGTAAATTTAAGTATATTATTATAAACTATAATTGAGATATGATATAATATACAATCAAATTCTCTAAATAGTCTTTTTTTTTTTTTTTGGTCTTGTAAATATCAAAAGGGAGTTTAATCACATTAATCTATTAGTTCGTTGGTCTATTCAAACTCAGATCACATTACTTATTTAAAGATGTTCATATGAAACATGCTTTTAAATAGGCTAGTAGGTCACATCAGACTTTCAAGAGATCAGACTCAAGCCTAAAAAATAAGCCTATGACAGGCCGCTGACAATGCTTAAGCCTTAAATATTTTGACAGGACAGACTTAGGCCTTACAAAGTCTAACTCGACCTAATCTATTCCCACCCTTACTAATCGTAGAGTTGCCAAATTTGATTACCGAATTTATACTCTTCGTCGTCATTAAATTTTTCTTGTAGTAATCAAGAATACTCGACGCTGAGTTACCACTGAGATAACTTCGTTCCAACTTTCACAGGTAGTAGAATACTCGACGCTGAAGGTAAGCCTCTAAGCATAAGTCTTGTTGACAAAACAAACAACAACCAAATTGTTCCAACAAGTCTTCCTTACCCTATAAAGCTAGAGATTGTGGTACTTGATGGAGATTTTCCACATGATGAAAATGAGAACTGGACTAGTGAAGAATTCAATAAATACATAGTGAAGGAAAGAACTGGGAAGAGACCATTACTTTCTGGAGAATTGAACCTTACTATGAGAGGTGGAATTGCACCAATTGGAGACATAGAGTTCACAGATAATTCTAGCTGGATAAGGAGCAGGAAGTTTAGGGTTGCAGTTATGGTGAGTCATGGGAGTAATCAAAGTGTTAGGATTCAAGAAGGCATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATGTAAGTTTTATTTTCATAATTCATAAACTTGGTATAGTATAAACAATAATATCTTTAACATGACTTAATTTTTTGTAGGATGATATATTATTGCAATATTGATTGGAATATATTTGATGACAATGACTAAATACTTATTTCCAACTAACTTTGGTCTTTTTAAATTAGTTCTTACACCCTTAAATACCTTATTAAGATGGTCCCCACTTTTAGTTGTACTATAGACTATGAAATAGGAACGCAATTTATTTTGAGCGTTTGACTAGTCATTCATCATTTTATAGCTTCTAGCTAGGGAATTTAAGTTGTCATTTGTATACTCTTCCGTCTCAGATTAAGAGAGATATTTGCTCATTTCTACATATTAAGAAAAATGTATAAGTCATCAGAGAGAAAAATGATTTTAAGTGTTTTTGTTAAGTATCGGTGTATTCATCATTATCATAAATGTGAAATGAAAAATATGGAATTGAGAGTGATGAAAGTAGTATTAATTAGAATTATAATTGAAAAAAGAATCAATATTGCATTGAAAAGTGAAATGAGTATGTTATTTTGATACAATATTTTTTTTATAAAAAACCCACTTATTATGGAACGGAGGGAGTAATAGGGTAAATGATTTTTGTTGGTGTAGTTTTGTTATTGAGTGTGTAAATATTGTTTATATTTAGTAATTTATGAGTACTTTAAATCTTACTTTGATGTAGTATTAATTTTATGAGTTGCATATAAGCATTTTTGCCTGTTAAGGAATCATATATACTACAAGTTCTTTTTTGAAGTAAGTATTACATGCTATTATTTTGTTTTATTTTTTGACATTGTTTTCCTAATTATCATGAAGTGTACAAAAAACATCATCCACCAATGCTTGGCGATGATGTGTGGCGCCTAGAGAAGATAGGGAAAGATGGAGCTTTCCATCACAAAATGATGGCCAAGGGGATCAAAACGGTGCAAGACTTTCTTAAATTAGCAGTTATTGATACTCCAAAGCTAAGAGAGGTATATATCTTTATAATTAGGGGTGAAAATAAAATAGACTACACCACATTTCCTAGAGTCTATCTTTATGCTAATTTTGTTTAGGATCTATTTATCTAAAAAATCACACTTTAGTTCATAAAAACTCTTTTAGTTCTATTAATATTTTCAATAATTTAAACATATTAAACTACATACACCATTATACAAGATCAATTTCTTTAAAAGATTAAGTTAGACCTCAAATTTGAACTTAAACTTATTGATCTATTAACTCGTTTGTTTATTTAAAGGTCTTGTTAACTTGTGCTCTTATGATACATGTTAAGGAATTCAAAAGTAAAAATTTTATACTGAAAAGAGTAGCTTGAGTACTTTTAAGAAATTGATTAGACGACTTTTGAGATAGAATTACTATATAGTAGTATATATATTTCCTTTAACATGTGCAATTAGCGTTTTCCTTTAAGTAAATATATTAGATTCTTATTTGTGAAGCAATATGAACTTATTACTTTTTTTATTGATGAATTTATCTGAAATCAGATTTTGGGCATGGGGATGTCTGATAGAATGTGGAAAGTCACAATAAAGCATGCAATGACTTGTGACATGGGGAGCAAGATCTATAGGTACCGTGGACCTCAGTTTACCATTCTTCTGAATCCAATATGCAAATTAATTAAAGCTAATATCAATGGACAAGAATTTTCCAGCAGAGAGTACTTGAGCCAAATGAATAAGGTACAATATATTAACCATCTACTAATGACTCACATTTGTAGTATTACTTTACTTTGTGGATTACACTATATGTTAGATATTGGTCCTCTAATTCATTTTAATTGGTGTTATACCATTTCTAAATTTGTAGAGCTATATAGATAAATTGGTTGGAGAAGCATACACAAAATGGAATGAGTTGGAGGAAATTGATGGAGTTTTAAATGATAACATTGCTTTGTTAACTCAAGGTATTTTCAATTAATCATCAATGACTTTTGTTCTCAATAAGCTAAATTATACATACTTTTTTGTCTTGTTCGAAATAACAAATATTAGTTGTTATTTTGTTAATAGAAATAAGATCATATACTCATACTGGTTGGCTTCGTAGCACCACACAAGACATGTTGTAGTGGATAACAATATGTATTCTTGTAGTTGACATGTTGGTGATCGTTGAATTATGATCAGATGAATTAATTTTTAAACTCGGCATTTCATTTTTTTTTTTAAAAATCATAATATATATCGAAATTTTAATCGATCGTCTGAGTTCAATTTAACCTTAACCGATATGACCAATATGTTAAATGTGTGCATTTGCCGACTGCAACAAATCTAATTCAACTTGTGCAAAAAACAAATTCATGTTAAGAGTGGTGAATGAATACAAATCTCGTACAAAACTAGTAGAGGTATTAATCTAAAAAAATATCAACTAGATTGTATATATAGTTCCATTTTATTAAGTATCTAAAAAAGTTTCAATTATGAATTTGACAAATAATTAATTACATTTTTTTTCTACAATGAAATTAATTTTAATATGAACTTAATTATAGGTGATCAAACTGTGGAGCAATATCCAAACAATCATCCAGCAACAGTAGCAACAACATATCATCAGAATCAATATTATGGTGATCCATCTATAGAAAATATTGCTAGCTATGTACCAAGCAATAATGCACAAATGGCAAGCAGTGAGTGGTTATTGAATCAAGCCTATACCACAACACCAAATGCAAATGGATTTCCTTTTGGCTTCACAGGCTCACAATCAGATGAGGACATGACACCTTCAGGTTCAGGCCTTAGGGACATTAATGGGTTCACAAGGCAACTTTAA

Protein sequence

>MS.gene80821.t1

MATKRVFDDSNDKDQDNPNEKRMKSTRPSFASVIETAVNVQNMRNFLGALEPFLKRVVSEEVDRAIGNCFPPSINRSPSLRIQAPRDQQPTLQLSFNKRLSLPIFTGSRILDAEGKPLSISLVDKTNNNQIVPTSLPYPIKLEIVVLDGDFPHDENENWTSEEFNKYIVKERTGKRPLLSGELNLTMRGGIAPIGDIEFTDNSSWIRSRKFRVAVMVSHGSNQSVRIQEGMTEAFVVKDHRGELYKKHHPPMLGDDVWRLEKIGKDGAFHHKMMAKGIKTVQDFLKLAVIDTPKLREILGMGMSDRMWKVTIKHAMTCDMGSKIYRYRGPQFTILLNPICKLIKANINGQEFSSREYLSQMNKSYIDKLVGEAYTKWNELEEIDGVLNDNIALLTQGDQTVEQYPNNHPATVATTYHQNQYYGDPSIENIASYVPSNNAQMASSEWLLNQAYTTTPNANGFPFGFTGSQSDEDMTPSGSGLRDINGFTRQL