Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80821.t1 | RHN52774.1 | 92.5 | 493 | 35 | 1 | 1 | 491 | 1 | 493 | 1.20E-265 | 925.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80821.t1 | Q9C9T2 | 46.9 | 480 | 221 | 11 | 1 | 476 | 1 | 450 | 4.5e-107 | 389.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80821.t1 | A0A396HLL0 | 92.5 | 493 | 35 | 1 | 1 | 491 | 1 | 493 | 8.9e-266 | 925.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene80821 | 0.831586 | 1.54E-55 | -1.69E-46 |
MS.gene049413 | MS.gene80821 | 0.805627 | 1.22E-49 | -1.69E-46 |
MS.gene049452 | MS.gene80821 | 0.804814 | 1.80E-49 | -1.69E-46 |
MS.gene049983 | MS.gene80821 | 0.80117 | 1.02E-48 | -1.69E-46 |
MS.gene050645 | MS.gene80821 | 0.804831 | 1.79E-49 | -1.69E-46 |
MS.gene050669 | MS.gene80821 | 0.844468 | 7.42E-59 | -1.69E-46 |
MS.gene050759 | MS.gene80821 | 0.825305 | 5.04E-54 | -1.69E-46 |
MS.gene050961 | MS.gene80821 | 0.808503 | 3.00E-50 | -1.69E-46 |
MS.gene050962 | MS.gene80821 | 0.813924 | 2.00E-51 | -1.69E-46 |
MS.gene051490 | MS.gene80821 | 0.809721 | 1.64E-50 | -1.69E-46 |
MS.gene051541 | MS.gene80821 | 0.801293 | 9.64E-49 | -1.69E-46 |
MS.gene052016 | MS.gene80821 | 0.809199 | 2.13E-50 | -1.69E-46 |
MS.gene052118 | MS.gene80821 | 0.826242 | 3.02E-54 | -1.69E-46 |
MS.gene052493 | MS.gene80821 | 0.828753 | 7.55E-55 | -1.69E-46 |
MS.gene052685 | MS.gene80821 | 0.804419 | 2.18E-49 | -1.69E-46 |
MS.gene053094 | MS.gene80821 | 0.809945 | 1.47E-50 | -1.69E-46 |
MS.gene053643 | MS.gene80821 | 0.807279 | 5.46E-50 | -1.69E-46 |
MS.gene053963 | MS.gene80821 | 0.828913 | 6.90E-55 | -1.69E-46 |
MS.gene054022 | MS.gene80821 | 0.81866 | 1.75E-52 | -1.69E-46 |
MS.gene05410 | MS.gene80821 | 0.841301 | 5.16E-58 | -1.69E-46 |
MS.gene05423 | MS.gene80821 | 0.800976 | 1.12E-48 | -1.69E-46 |
MS.gene05439 | MS.gene80821 | 0.898239 | 6.45E-77 | -1.69E-46 |
MS.gene054479 | MS.gene80821 | 0.812755 | 3.61E-51 | -1.69E-46 |
MS.gene054576 | MS.gene80821 | 0.830896 | 2.27E-55 | -1.69E-46 |
MS.gene054892 | MS.gene80821 | 0.908784 | 1.17E-81 | -1.69E-46 |
MS.gene054893 | MS.gene80821 | 0.905078 | 6.27E-80 | -1.69E-46 |
MS.gene055147 | MS.gene80821 | 0.821155 | 4.69E-53 | -1.69E-46 |
MS.gene055148 | MS.gene80821 | 0.802683 | 4.99E-49 | -1.69E-46 |
MS.gene055149 | MS.gene80821 | 0.809707 | 1.66E-50 | -1.69E-46 |
MS.gene055222 | MS.gene80821 | 0.808321 | 3.28E-50 | -1.69E-46 |
MS.gene055226 | MS.gene80821 | 0.851182 | 1.05E-60 | -1.69E-46 |
MS.gene055231 | MS.gene80821 | 0.812877 | 3.40E-51 | -1.69E-46 |
MS.gene05624 | MS.gene80821 | 0.802898 | 4.51E-49 | -1.69E-46 |
MS.gene05686 | MS.gene80821 | 0.805368 | 1.38E-49 | -1.69E-46 |
MS.gene056973 | MS.gene80821 | 0.807263 | 5.51E-50 | -1.69E-46 |
MS.gene057071 | MS.gene80821 | 0.804501 | 2.10E-49 | -1.69E-46 |
MS.gene057155 | MS.gene80821 | 0.836021 | 1.19E-56 | -1.69E-46 |
MS.gene057622 | MS.gene80821 | 0.806173 | 9.35E-50 | -1.69E-46 |
MS.gene058289 | MS.gene80821 | 0.806657 | 7.40E-50 | -1.69E-46 |
MS.gene058429 | MS.gene80821 | 0.826205 | 3.08E-54 | -1.69E-46 |
MS.gene05861 | MS.gene80821 | 0.803645 | 3.16E-49 | -1.69E-46 |
MS.gene059170 | MS.gene80821 | 0.800506 | 1.40E-48 | -1.69E-46 |
MS.gene05952 | MS.gene80821 | 0.83012 | 3.51E-55 | -1.69E-46 |
MS.gene05956 | MS.gene80821 | 0.802499 | 5.45E-49 | -1.69E-46 |
MS.gene059686 | MS.gene80821 | 0.801494 | 8.77E-49 | -1.69E-46 |
MS.gene059774 | MS.gene80821 | 0.801773 | 7.69E-49 | -1.69E-46 |
MS.gene06023 | MS.gene80821 | 0.811223 | 7.80E-51 | -1.69E-46 |
MS.gene060259 | MS.gene80821 | 0.827368 | 1.63E-54 | -1.69E-46 |
MS.gene060373 | MS.gene80821 | 0.803091 | 4.11E-49 | -1.69E-46 |
MS.gene060412 | MS.gene80821 | 0.880148 | 6.97E-70 | -1.69E-46 |
MS.gene060413 | MS.gene80821 | 0.856026 | 4.25E-62 | -1.69E-46 |
MS.gene060520 | MS.gene80821 | 0.84636 | 2.28E-59 | -1.69E-46 |
MS.gene060697 | MS.gene80821 | 0.801229 | 9.94E-49 | -1.69E-46 |
MS.gene060840 | MS.gene80821 | 0.821267 | 4.42E-53 | -1.69E-46 |
MS.gene060850 | MS.gene80821 | 0.821159 | 4.68E-53 | -1.69E-46 |
MS.gene060851 | MS.gene80821 | 0.827601 | 1.43E-54 | -1.69E-46 |
MS.gene060852 | MS.gene80821 | 0.823564 | 1.29E-53 | -1.69E-46 |
MS.gene060932 | MS.gene80821 | 0.811696 | 6.15E-51 | -1.69E-46 |
MS.gene061047 | MS.gene80821 | 0.846416 | 2.20E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80821.t1 | MTR_6g083730 | 90.669 | 493 | 36 | 2 | 1 | 491 | 1 | 485 | 0.0 | 920 |
MS.gene80821.t1 | MTR_8g104510 | 63.579 | 475 | 161 | 9 | 1 | 471 | 1 | 467 | 0.0 | 599 |
MS.gene80821.t1 | MTR_8g104490 | 62.346 | 486 | 168 | 12 | 1 | 480 | 1 | 477 | 0.0 | 574 |
MS.gene80821.t1 | MTR_6g083320 | 92.308 | 299 | 21 | 1 | 1 | 297 | 1 | 299 | 0.0 | 568 |
MS.gene80821.t1 | MTR_6g083320 | 83.333 | 132 | 14 | 1 | 360 | 491 | 296 | 419 | 6.12e-70 | 229 |
MS.gene80821.t1 | MTR_8g104490 | 63.789 | 417 | 138 | 10 | 69 | 480 | 4 | 412 | 4.11e-179 | 509 |
MS.gene80821.t1 | MTR_4g128600 | 46.135 | 414 | 203 | 9 | 4 | 412 | 14 | 412 | 2.37e-118 | 361 |
MS.gene80821.t1 | MTR_4g090970 | 46.582 | 395 | 195 | 8 | 2 | 390 | 13 | 397 | 1.40e-113 | 348 |
MS.gene80821.t1 | MTR_2g011810 | 45.202 | 396 | 202 | 7 | 1 | 390 | 12 | 398 | 1.12e-112 | 347 |
MS.gene80821.t1 | MTR_2g450080 | 41.573 | 445 | 233 | 9 | 4 | 440 | 11 | 436 | 1.88e-107 | 332 |
MS.gene80821.t1 | MTR_4g106810 | 47.386 | 306 | 152 | 7 | 14 | 318 | 9 | 306 | 3.04e-81 | 262 |
MS.gene80821.t1 | MTR_6g083810 | 90.299 | 134 | 11 | 1 | 1 | 132 | 1 | 134 | 2.82e-80 | 246 |
MS.gene80821.t1 | MTR_7g112000 | 35.429 | 350 | 207 | 9 | 50 | 393 | 44 | 380 | 4.03e-52 | 184 |
MS.gene80821.t1 | MTR_7g111960 | 33.918 | 342 | 213 | 9 | 46 | 381 | 56 | 390 | 1.04e-46 | 171 |
MS.gene80821.t1 | MTR_7g111980 | 34.125 | 337 | 201 | 8 | 50 | 379 | 59 | 381 | 7.64e-46 | 168 |
MS.gene80821.t1 | MTR_7g111980 | 36.271 | 295 | 175 | 7 | 92 | 379 | 10 | 298 | 1.95e-44 | 163 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80821.t1 | AT1G73805 | 50.208 | 480 | 205 | 11 | 1 | 476 | 1 | 450 | 2.06e-150 | 437 |
MS.gene80821.t1 | AT5G57580 | 47.781 | 383 | 183 | 7 | 9 | 385 | 17 | 388 | 4.02e-115 | 353 |
MS.gene80821.t1 | AT4G25800 | 46.134 | 388 | 191 | 7 | 4 | 385 | 2 | 377 | 8.93e-111 | 340 |
MS.gene80821.t1 | AT4G25800 | 46.134 | 388 | 191 | 7 | 4 | 385 | 2 | 377 | 8.93e-111 | 340 |
MS.gene80821.t1 | AT2G18750 | 38.900 | 491 | 271 | 12 | 4 | 475 | 16 | 496 | 1.86e-107 | 333 |
MS.gene80821.t1 | AT2G18750 | 38.900 | 491 | 271 | 12 | 4 | 475 | 16 | 496 | 1.86e-107 | 333 |
MS.gene80821.t1 | AT2G18750 | 38.900 | 491 | 271 | 12 | 4 | 475 | 16 | 496 | 1.86e-107 | 333 |
MS.gene80821.t1 | AT2G24300 | 42.526 | 388 | 214 | 6 | 4 | 387 | 3 | 385 | 1.12e-95 | 301 |
MS.gene80821.t1 | AT2G24300 | 42.526 | 388 | 214 | 6 | 4 | 387 | 7 | 389 | 1.15e-95 | 301 |
MS.gene80821.t1 | AT4G31000 | 40.749 | 427 | 230 | 11 | 11 | 425 | 13 | 428 | 2.95e-94 | 296 |
MS.gene80821.t1 | AT5G62570 | 38.168 | 393 | 218 | 9 | 1 | 384 | 1 | 377 | 2.69e-86 | 275 |
MS.gene80821.t1 | AT5G62570 | 38.933 | 375 | 204 | 9 | 1 | 366 | 1 | 359 | 8.51e-86 | 269 |
MS.gene80821.t1 | AT2G24300 | 43.713 | 334 | 181 | 5 | 58 | 387 | 8 | 338 | 5.00e-84 | 270 |
MS.gene80821.t1 | AT5G62570 | 39.503 | 362 | 198 | 8 | 32 | 384 | 13 | 362 | 1.26e-83 | 267 |
MS.gene80821.t1 | AT4G31000 | 37.995 | 379 | 199 | 10 | 58 | 425 | 54 | 407 | 7.49e-71 | 235 |
MS.gene80821.t1 | AT5G62570 | 40.924 | 303 | 159 | 7 | 1 | 298 | 1 | 288 | 2.53e-69 | 224 |
MS.gene80821.t1 | AT5G26920 | 36.288 | 361 | 208 | 8 | 29 | 384 | 24 | 367 | 3.11e-69 | 227 |
MS.gene80821.t1 | AT5G26920 | 36.288 | 361 | 208 | 8 | 29 | 384 | 24 | 367 | 2.38e-68 | 229 |
MS.gene80821.t1 | AT5G26920 | 36.011 | 361 | 201 | 9 | 29 | 384 | 24 | 359 | 5.82e-65 | 220 |
Find 114 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATAAGGAGCAGGAAGTTT+AGG | 0.223342 | 6.2:-82353596 | MS.gene80821:CDS |
GTAGAGCTATATAGATAAAT+TGG | 0.240990 | 6.2:-82351622 | MS.gene80821:intron |
GAAGACTTGTTGGAACAATT+TGG | 0.268874 | 6.2:+82353823 | None:intergenic |
GGGAAGAGACCATTACTTTC+TGG | 0.273521 | 6.2:-82353690 | MS.gene80821:CDS |
GCTTTAATTAATTTGCATAT+TGG | 0.279068 | 6.2:+82351826 | None:intergenic |
ACCACAATCTCTAGCTTTAT+AGG | 0.281295 | 6.2:+82353795 | None:intergenic |
AGTTTCATACCTGTGAAAAT+TGG | 0.291885 | 6.2:+82355161 | None:intergenic |
ACTGTTGCTGGATGATTGTT+TGG | 0.310236 | 6.2:+82350901 | None:intergenic |
TCAGGCCTTAGGGACATTAA+TGG | 0.310731 | 6.2:-82350679 | MS.gene80821:CDS |
TATGTTGTTGCTACTGTTGC+TGG | 0.313492 | 6.2:+82350889 | None:intergenic |
TGCATTTGGTGTTGTGGTAT+AGG | 0.314012 | 6.2:+82350762 | None:intergenic |
TCAACAAGACTTATGCTTAG+AGG | 0.315407 | 6.2:+82353861 | None:intergenic |
AATGCAAATGGATTTCCTTT+TGG | 0.323071 | 6.2:-82350745 | MS.gene80821:CDS |
TATCATCAGAATCAATATTA+TGG | 0.324552 | 6.2:-82350868 | MS.gene80821:CDS |
TATATTGTACCTTATTCATT+TGG | 0.342595 | 6.2:+82351761 | None:intergenic |
GATTTCATTCGTTTCTCGTT+TGG | 0.343840 | 6.2:+82356351 | None:intergenic |
GATAAGGAGCAGGAAGTTTA+GGG | 0.346752 | 6.2:-82353595 | MS.gene80821:CDS |
CACCTTCAGGTTCAGGCCTT+AGG | 0.352361 | 6.2:-82350690 | MS.gene80821:CDS |
TTGGAGAAGCATACACAAAA+TGG | 0.358634 | 6.2:-82351599 | MS.gene80821:CDS |
CTAGAGATTGTGGTACTTGA+TGG | 0.361616 | 6.2:-82353786 | MS.gene80821:CDS |
GTACTTGAGCCAAATGAATA+AGG | 0.364385 | 6.2:-82351770 | MS.gene80821:intron |
AAAGGAAATCCATTTGCATT+TGG | 0.365748 | 6.2:+82350748 | None:intergenic |
GAAGAGGTGGATAGAGCAAT+TGG | 0.372285 | 6.2:-82355290 | MS.gene80821:CDS |
GACTGAGGCATTTGTTGTTA+AGG | 0.376185 | 6.2:-82353517 | MS.gene80821:CDS |
CAGGCCTTAGGGACATTAAT+GGG | 0.376761 | 6.2:-82350678 | MS.gene80821:CDS |
CCACAATCTCTAGCTTTATA+GGG | 0.385020 | 6.2:+82353796 | None:intergenic |
ATATATACCTCTCTTAGCTT+TGG | 0.385685 | 6.2:+82352486 | None:intergenic |
GCTTTCCACCTTCCATCAAT+AGG | 0.389606 | 6.2:-82355262 | MS.gene80821:CDS |
ATAGGGTAAGGAAGACTTGT+TGG | 0.390458 | 6.2:+82353813 | None:intergenic |
GTTGTTGATCCCTTGGTGCT+TGG | 0.401027 | 6.2:+82355222 | None:intergenic |
GTTTCATACCTGTGAAAATT+GGG | 0.401177 | 6.2:+82355162 | None:intergenic |
GATGAGGACATGACACCTTC+AGG | 0.405456 | 6.2:-82350703 | MS.gene80821:CDS |
GAAGTTTAGGGTTGCAGTTA+TGG | 0.408854 | 6.2:-82353583 | MS.gene80821:CDS |
TAATGAAGGTGACCTATTGA+TGG | 0.408912 | 6.2:+82355250 | None:intergenic |
GACATGACACCTTCAGGTTC+AGG | 0.411025 | 6.2:-82350697 | MS.gene80821:CDS |
GTGTGGCGCCTAGAGAAGAT+AGG | 0.412903 | 6.2:-82352594 | MS.gene80821:CDS |
TACATAGTGAAGGAAAGAAC+TGG | 0.419237 | 6.2:-82353711 | MS.gene80821:CDS |
TACAACTCTCATTCAACAAA+AGG | 0.425881 | 6.2:-82355193 | MS.gene80821:CDS |
CACATGATGAAAATGAGAAC+TGG | 0.432538 | 6.2:-82353755 | MS.gene80821:CDS |
AAGGTTGGTTGTTGATCCCT+TGG | 0.434839 | 6.2:+82355215 | None:intergenic |
ACCTTCAGGTTCAGGCCTTA+GGG | 0.438529 | 6.2:-82350689 | MS.gene80821:CDS |
CATCTTTCCCTATCTTCTCT+AGG | 0.450984 | 6.2:+82352586 | None:intergenic |
AGAGGTGGAATTGCACCAAT+TGG | 0.453092 | 6.2:-82353648 | MS.gene80821:CDS |
ACCACAACACCAAATGCAAA+TGG | 0.454821 | 6.2:-82350757 | MS.gene80821:CDS |
GCCATTTGTGCATTATTGCT+TGG | 0.455048 | 6.2:+82350811 | None:intergenic |
ATGGGAGTAATCAAAGTGTT+AGG | 0.455811 | 6.2:-82353554 | MS.gene80821:CDS |
CAGATAATTCTAGCTGGATA+AGG | 0.456631 | 6.2:-82353611 | MS.gene80821:CDS |
ATCTCTAGCTTTATAGGGTA+AGG | 0.456668 | 6.2:+82353801 | None:intergenic |
ACATGGGGAGCAAGATCTAT+AGG | 0.460309 | 6.2:-82351882 | MS.gene80821:CDS |
TTAATTAAAGCTAATATCAA+TGG | 0.468078 | 6.2:-82351814 | MS.gene80821:CDS |
TTTGTTGAATGAGAGTTGTA+AGG | 0.470397 | 6.2:+82355196 | None:intergenic |
TCCATTTGCATTTGGTGTTG+TGG | 0.474676 | 6.2:+82350756 | None:intergenic |
GCATATTGGATTCAGAAGAA+TGG | 0.478493 | 6.2:+82351840 | None:intergenic |
AATGAGTTGGAGGAAATTGA+TGG | 0.479528 | 6.2:-82351576 | MS.gene80821:CDS |
CAATTCCACCTCTCATAGTA+AGG | 0.486241 | 6.2:+82353658 | None:intergenic |
ACCAAGCAATAATGCACAAA+TGG | 0.486276 | 6.2:-82350812 | MS.gene80821:CDS |
AACATTGCTTTGTTAACTCA+AGG | 0.487994 | 6.2:-82351540 | MS.gene80821:intron |
TTGGCTCAAGTACTCTCTGC+TGG | 0.488877 | 6.2:+82351780 | None:intergenic |
CACAAAATGGAATGAGTTGG+AGG | 0.508685 | 6.2:-82351586 | MS.gene80821:CDS |
CACACATCATCGCCAAGCAT+TGG | 0.517632 | 6.2:+82352612 | None:intergenic |
CCATCACAAAATGATGGCCA+AGG | 0.521911 | 6.2:-82352556 | MS.gene80821:CDS |
AAACATCATCCACCAATGCT+TGG | 0.524035 | 6.2:-82352624 | MS.gene80821:CDS |
CCCTATAAAGCTAGAGATTG+TGG | 0.525360 | 6.2:-82353796 | MS.gene80821:CDS |
ATTCTAGCTGGATAAGGAGC+AGG | 0.530678 | 6.2:-82353605 | MS.gene80821:CDS |
TGGTTAGGTGAGTGAAGAGG+TGG | 0.534317 | 6.2:-82355303 | MS.gene80821:intron |
GGTGCTTGGATTCTTAATGA+AGG | 0.535525 | 6.2:+82355236 | None:intergenic |
AGCTATATAGATAAATTGGT+TGG | 0.536950 | 6.2:-82351618 | MS.gene80821:CDS |
TTGAATGAGAGTTGTAAGGT+TGG | 0.548181 | 6.2:+82355200 | None:intergenic |
GTGAACTCTATGTCTCCAAT+TGG | 0.550652 | 6.2:+82353633 | None:intergenic |
AGTTCACAGATAATTCTAGC+TGG | 0.556731 | 6.2:-82353617 | MS.gene80821:CDS |
GTTGCAGTTATGGTGAGTCA+TGG | 0.556840 | 6.2:-82353573 | MS.gene80821:CDS |
ACATCATCGCCAAGCATTGG+TGG | 0.557359 | 6.2:+82352615 | None:intergenic |
TGAACCCATTAATGTCCCTA+AGG | 0.560681 | 6.2:+82350674 | None:intergenic |
GATGGCCAAGGGGATCAAAA+CGG | 0.564022 | 6.2:-82352544 | MS.gene80821:CDS |
TTGCAGTTATGGTGAGTCAT+GGG | 0.566538 | 6.2:-82353572 | MS.gene80821:CDS |
TGTGAGCCTGTGAAGCCAAA+AGG | 0.567683 | 6.2:+82350730 | None:intergenic |
ATACACAAAATGGAATGAGT+TGG | 0.570127 | 6.2:-82351589 | MS.gene80821:CDS |
CTAGAGAAGATAGGGAAAGA+TGG | 0.572158 | 6.2:-82352585 | MS.gene80821:CDS |
TTCAATTCTCCAGAAAGTAA+TGG | 0.573973 | 6.2:+82353681 | None:intergenic |
AGCTTTCCATCACAAAATGA+TGG | 0.576938 | 6.2:-82352562 | MS.gene80821:CDS |
CAAAGTGTTAGGATTCAAGA+AGG | 0.583699 | 6.2:-82353543 | MS.gene80821:CDS |
AGTGCATACGAAGCAAAAGA+AGG | 0.588320 | 6.2:+82356321 | None:intergenic |
TGTGGCGCCTAGAGAAGATA+GGG | 0.589096 | 6.2:-82352593 | MS.gene80821:CDS |
CAATGCTTGGCGATGATGTG+TGG | 0.590954 | 6.2:-82352611 | MS.gene80821:CDS |
CATCACAAAATGATGGCCAA+GGG | 0.599188 | 6.2:-82352555 | MS.gene80821:CDS |
ATTCAATAAATACATAGTGA+AGG | 0.602832 | 6.2:-82353721 | MS.gene80821:CDS |
CATACCTGTGAAAATTGGGA+GGG | 0.602874 | 6.2:+82355166 | None:intergenic |
TCATACCTGTGAAAATTGGG+AGG | 0.603052 | 6.2:+82355165 | None:intergenic |
GAATTGAACCTTACTATGAG+AGG | 0.607156 | 6.2:-82353666 | MS.gene80821:CDS |
CACAAATGGCAAGCAGTGAG+TGG | 0.611326 | 6.2:-82350798 | MS.gene80821:CDS |
TTGAACCTTACTATGAGAGG+TGG | 0.618381 | 6.2:-82353663 | MS.gene80821:CDS |
TCCCTAAGGCCTGAACCTGA+AGG | 0.620292 | 6.2:+82350688 | None:intergenic |
GCATGCAATGACTTGTGACA+TGG | 0.626229 | 6.2:-82351899 | MS.gene80821:CDS |
AGTAGAATACTCGACGCTGA+AGG | 0.629771 | 6.2:-82353888 | MS.gene80821:CDS |
ATTTGGTTAGGTGAGTGAAG+AGG | 0.632675 | 6.2:-82355306 | MS.gene80821:intron |
ACATAGTGAAGGAAAGAACT+GGG | 0.634050 | 6.2:-82353710 | MS.gene80821:CDS |
ATTAAGAATCCAAGCACCAA+GGG | 0.638386 | 6.2:-82355231 | MS.gene80821:CDS |
CAGTTAATGTGCAAAACATG+CGG | 0.638840 | 6.2:-82356142 | MS.gene80821:CDS |
GGGACATTAATGGGTTCACA+AGG | 0.645434 | 6.2:-82350669 | MS.gene80821:CDS |
CATTAAGAATCCAAGCACCA+AGG | 0.647255 | 6.2:-82355232 | MS.gene80821:CDS |
AGCAAGATCTATAGGTACCG+TGG | 0.658732 | 6.2:-82351874 | MS.gene80821:CDS |
CACAGGCTCACAATCAGATG+AGG | 0.659714 | 6.2:-82350719 | MS.gene80821:CDS |
GAATGGTAAACTGAGGTCCA+CGG | 0.664053 | 6.2:+82351857 | None:intergenic |
GGTGACCTATTGATGGAAGG+TGG | 0.664907 | 6.2:+82355257 | None:intergenic |
TGATACTCCAAAGCTAAGAG+AGG | 0.665341 | 6.2:-82352493 | MS.gene80821:intron |
CATGCAATGACTTGTGACAT+GGG | 0.667953 | 6.2:-82351898 | MS.gene80821:CDS |
TTCAGAAGAATGGTAAACTG+AGG | 0.674138 | 6.2:+82351850 | None:intergenic |
GAAGGTGACCTATTGATGGA+AGG | 0.674542 | 6.2:+82355254 | None:intergenic |
ATCACAAAATGATGGCCAAG+GGG | 0.679582 | 6.2:-82352554 | MS.gene80821:CDS |
TGGGGATGTCTGATAGAATG+TGG | 0.679640 | 6.2:-82351936 | MS.gene80821:CDS |
TTTGTTGTTAAGGATCATCG+TGG | 0.682651 | 6.2:-82353507 | MS.gene80821:CDS |
GATTCAAGAAGGCATGACTG+AGG | 0.696401 | 6.2:-82353532 | MS.gene80821:CDS |
AATTATAGGTGATCAAACTG+TGG | 0.703154 | 6.2:-82350932 | MS.gene80821:intron |
ATGCAATGACTTGTGACATG+GGG | 0.729736 | 6.2:-82351897 | MS.gene80821:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCTAATATATTTACTTAA+AGG | + | chr6.2:82355035-82355054 | None:intergenic | 10.0% |
!! | ATAAACTTAAATTACTAAAA+AGG | + | chr6.2:82352644-82352663 | None:intergenic | 10.0% |
!! | TACAAATTATAATACAATTA+AGG | + | chr6.2:82352594-82352613 | None:intergenic | 10.0% |
!! | TGATATTATCTTAAAATTTA+AGG | - | chr6.2:82351280-82351299 | MS.gene80821:intron | 10.0% |
!! | TTTAATATGAACTTAATTAT+AGG | - | chr6.2:82356116-82356135 | MS.gene80821:CDS | 10.0% |
!!! | ATAGTCTTTTTTTTTTTTTT+TGG | - | chr6.2:82352751-82352770 | MS.gene80821:intron | 10.0% |
!!! | TTTTTAGATACTTAATAAAA+TGG | + | chr6.2:82356036-82356055 | None:intergenic | 10.0% |
!!! | TTTTTTATTAAAAATGGTAA+AGG | + | chr6.2:82351371-82351390 | None:intergenic | 10.0% |
!! | ACTTTATTATATGATTCATT+TGG | - | chr6.2:82351739-82351758 | MS.gene80821:intron | 15.0% |
!! | AGGTATATATCTTTATAATT+AGG | - | chr6.2:82354589-82354608 | MS.gene80821:intron | 15.0% |
!! | ATACAAATATATTGTTTGTT+GGG | + | chr6.2:82351148-82351167 | None:intergenic | 15.0% |
!! | CTATTTAAGGAAAAAAAAAT+TGG | + | chr6.2:82352128-82352147 | None:intergenic | 15.0% |
!! | CTTAAAAATTCATATGAAAA+TGG | + | chr6.2:82352370-82352389 | None:intergenic | 15.0% |
!! | GGTATATATCTTTATAATTA+GGG | - | chr6.2:82354590-82354609 | MS.gene80821:intron | 15.0% |
!! | GTATATATCTTTATAATTAG+GGG | - | chr6.2:82354591-82354610 | MS.gene80821:intron | 15.0% |
!! | TAAATGTGAAATGAAAAATA+TGG | - | chr6.2:82354027-82354046 | MS.gene80821:intron | 15.0% |
!! | TATACAAATATATTGTTTGT+TGG | + | chr6.2:82351149-82351168 | None:intergenic | 15.0% |
!! | TATATTATTGCAATATTGAT+TGG | - | chr6.2:82353666-82353685 | MS.gene80821:CDS | 15.0% |
!! | TATTATCTTAAAATTTAAGG+CGG | - | chr6.2:82351283-82351302 | MS.gene80821:intron | 15.0% |
!! | TTAATTAAAGCTAATATCAA+TGG | - | chr6.2:82355248-82355267 | MS.gene80821:CDS | 15.0% |
!! | TTGAAATGAAAAAAAGATAA+AGG | - | chr6.2:82352519-82352538 | MS.gene80821:CDS | 15.0% |
!! | TTGAAATGAAAAAAAGATAA+AGG | + | chr6.2:82352538-82352519 | None:intergenic | 15.0% |
!!! | AATTTTAAGGTTGTTTAATA+TGG | + | chr6.2:82351473-82351492 | None:intergenic | 15.0% |
!!! | ATCTTTTTTTCATTTCAATT+TGG | + | chr6.2:82352353-82352334 | None:intergenic | 15.0% |
!!! | ATTTTCATAATTCATAAACT+TGG | - | chr6.2:82353592-82353611 | MS.gene80821:CDS | 15.0% |
!!! | GATGAATTAATTTTTAAACT+CGG | - | chr6.2:82355766-82355785 | MS.gene80821:intron | 15.0% |
!!! | TATTTTCTTAAAAATGGTAA+AGG | + | chr6.2:82351346-82351365 | None:intergenic | 15.0% |
!!! | TTCATGATTTTATTTTCTAA+TGG | - | chr6.2:82352397-82352416 | MS.gene80821:intron | 15.0% |
!! | AAGAAATTGATCTTGTATAA+TGG | + | chr6.2:82354772-82354791 | None:intergenic | 20.0% |
!! | AATATAGCTTATGAAAATTG+AGG | - | chr6.2:82351196-82351215 | MS.gene80821:intron | 20.0% |
!! | ATAAATTCGGTAATCAAATT+TGG | + | chr6.2:82353062-82353081 | None:intergenic | 20.0% |
!! | ATATAGCTTATGAAAATTGA+GGG | - | chr6.2:82351197-82351216 | MS.gene80821:intron | 20.0% |
!! | ATTATATGATTCATTTGGTT+AGG | - | chr6.2:82351744-82351763 | MS.gene80821:intron | 20.0% |
!! | ATTCAATAAATACATAGTGA+AGG | - | chr6.2:82353341-82353360 | MS.gene80821:intron | 20.0% |
!! | ATTTAACATATTGGTCATAT+CGG | + | chr6.2:82355868-82355887 | None:intergenic | 20.0% |
!! | GTTACCTAAAATAAAGTTAA+GGG | + | chr6.2:82352301-82352320 | None:intergenic | 20.0% |
!! | TAACTCGTTTGTTTATTTAA+AGG | - | chr6.2:82354841-82354860 | MS.gene80821:intron | 20.0% |
!! | TATAAAAAACCCACTTATTA+TGG | - | chr6.2:82354156-82354175 | MS.gene80821:intron | 20.0% |
!! | TATATTGTACCTTATTCATT+TGG | + | chr6.2:82355304-82355323 | None:intergenic | 20.0% |
!! | TATCATCAGAATCAATATTA+TGG | - | chr6.2:82356194-82356213 | MS.gene80821:intron | 20.0% |
!! | TGTTACCTAAAATAAAGTTA+AGG | + | chr6.2:82352302-82352321 | None:intergenic | 20.0% |
!! | TTACACTATATGTTAGATAT+TGG | - | chr6.2:82355374-82355393 | MS.gene80821:intron | 20.0% |
!! | TTATTTACATTTACCTAAGT+AGG | + | chr6.2:82352231-82352250 | None:intergenic | 20.0% |
!!! | AACATGACTTAATTTTTTGT+AGG | - | chr6.2:82353639-82353658 | MS.gene80821:CDS | 20.0% |
!!! | AAGGTCTATTTTCTTAAAAA+TGG | + | chr6.2:82351352-82351371 | None:intergenic | 20.0% |
!!! | ATACATATTTGAAGTTAATG+TGG | - | chr6.2:82351065-82351084 | MS.gene80821:intron | 20.0% |
!!! | ATGTGACTTTTTAGTTAAAT+AGG | + | chr6.2:82352173-82352192 | None:intergenic | 20.0% |
!!! | ATTTATCTGAAATCAGATTT+TGG | - | chr6.2:82355100-82355119 | MS.gene80821:intron | 20.0% |
!!! | CAAGACTCAAATAAATTTTA+AGG | + | chr6.2:82351486-82351505 | None:intergenic | 20.0% |
!!! | CATCTTAATAAGGTATTTAA+GGG | + | chr6.2:82353762-82353781 | None:intergenic | 20.0% |
!!! | CTTTATTTTAGGTAACAATT+TGG | - | chr6.2:82352305-82352324 | MS.gene80821:intron | 20.0% |
!!! | GCTTTAATTAATTTGCATAT+TGG | + | chr6.2:82355239-82355258 | None:intergenic | 20.0% |
!!! | TAAGTGTTTTTGTTAAGTAT+CGG | - | chr6.2:82353987-82354006 | MS.gene80821:intron | 20.0% |
!!! | TAAGTTTAAGTTCAAATTTG+AGG | + | chr6.2:82354812-82354831 | None:intergenic | 20.0% |
!!! | TATGAAACATGCTTTTAAAT+AGG | - | chr6.2:82352868-82352887 | MS.gene80821:intron | 20.0% |
!!! | TCTTTATGCTAATTTTGTTT+AGG | - | chr6.2:82354653-82354672 | MS.gene80821:intron | 20.0% |
!!! | TGATATGATTCTCTAAAAAA+TGG | - | chr6.2:82351308-82351327 | MS.gene80821:intron | 20.0% |
!!! | TGTACAAAAATATTGTTGTT+AGG | - | chr6.2:82351235-82351254 | MS.gene80821:intron | 20.0% |
!!! | TTTATCTGAAATCAGATTTT+GGG | - | chr6.2:82355101-82355120 | MS.gene80821:intron | 20.0% |
!!! | TTTTTTTCCTTAAATAGAGA+AGG | - | chr6.2:82352131-82352150 | MS.gene80821:intron | 20.0% |
! | AAACAAATTCATGTTAAGAG+TGG | - | chr6.2:82355933-82355952 | MS.gene80821:intron | 25.0% |
! | AATGCACACATTTAACATAT+TGG | + | chr6.2:82355877-82355896 | None:intergenic | 25.0% |
! | AATTGGAGATTTCATATTGA+CGG | + | chr6.2:82351564-82351583 | None:intergenic | 25.0% |
! | ACATTAATCTATTAGTTCGT+TGG | - | chr6.2:82352803-82352822 | MS.gene80821:intron | 25.0% |
! | AGCTATATAGATAAATTGGT+TGG | - | chr6.2:82355444-82355463 | MS.gene80821:intron | 25.0% |
! | AGTATATATGATTCCTTAAC+AGG | + | chr6.2:82354330-82354349 | None:intergenic | 25.0% |
! | AGTTTAACCTTCTCTATTTA+AGG | + | chr6.2:82352141-82352160 | None:intergenic | 25.0% |
! | ATAAGATCATATACTCATAC+TGG | - | chr6.2:82355652-82355671 | MS.gene80821:intron | 25.0% |
! | ATATATCAAGCATAAGAATG+AGG | + | chr6.2:82350869-82350888 | None:intergenic | 25.0% |
! | ATCAAATATTTACAGTCATG+TGG | + | chr6.2:82351264-82351283 | None:intergenic | 25.0% |
! | CACCAATTAAAATGAATTAG+AGG | + | chr6.2:82355401-82355420 | None:intergenic | 25.0% |
! | CCTTAAATACCTTATTAAGA+TGG | - | chr6.2:82353760-82353779 | MS.gene80821:CDS | 25.0% |
! | CTTGAAAATGTATATGAGAA+TGG | - | chr6.2:82352481-82352500 | MS.gene80821:intron | 25.0% |
! | GTAGAGCTATATAGATAAAT+TGG | - | chr6.2:82355440-82355459 | MS.gene80821:intron | 25.0% |
! | GTCATCTCTTAATTCTTATT+AGG | + | chr6.2:82351126-82351145 | None:intergenic | 25.0% |
! | GTTACCTGAAATTAAGTTAA+GGG | - | chr6.2:82352550-82352569 | MS.gene80821:CDS | 25.0% |
! | TAAGGAAAAAAAAATTGGCT+CGG | + | chr6.2:82352123-82352142 | None:intergenic | 25.0% |
! | TACTTATTTCCAACTAACTT+TGG | - | chr6.2:82353714-82353733 | MS.gene80821:CDS | 25.0% |
! | TCATATGAAAATGGATCAAA+AGG | + | chr6.2:82352361-82352380 | None:intergenic | 25.0% |
! | TCTATAGTACAACTAAAAGT+GGG | + | chr6.2:82353788-82353807 | None:intergenic | 25.0% |
! | TGTACTATAGACTATGAAAT+AGG | - | chr6.2:82353797-82353816 | MS.gene80821:CDS | 25.0% |
! | TGTAGTATTACTTTACTTTG+TGG | - | chr6.2:82355350-82355369 | MS.gene80821:intron | 25.0% |
! | TGTTACCTGAAATTAAGTTA+AGG | - | chr6.2:82352549-82352568 | MS.gene80821:CDS | 25.0% |
! | TTAAAAAGACCAAAGTTAGT+TGG | + | chr6.2:82353726-82353745 | None:intergenic | 25.0% |
! | TTGTAACTCTAACTATCTAA+GGG | + | chr6.2:82351955-82351974 | None:intergenic | 25.0% |
! | TTGTACACTTCATGATAATT+AGG | + | chr6.2:82354417-82354436 | None:intergenic | 25.0% |
! | TTTGTAACTCTAACTATCTA+AGG | + | chr6.2:82351956-82351975 | None:intergenic | 25.0% |
!! | ACTTCAAATATGTATGCTTT+TGG | + | chr6.2:82351060-82351079 | None:intergenic | 25.0% |
!! | ATAGGGTAAATGATTTTTGT+TGG | - | chr6.2:82354192-82354211 | MS.gene80821:intron | 25.0% |
!! | CCATCTTAATAAGGTATTTA+AGG | + | chr6.2:82353763-82353782 | None:intergenic | 25.0% |
!! | CTAGCAATATTTTCTATAGA+TGG | + | chr6.2:82356224-82356243 | None:intergenic | 25.0% |
!! | TAGCTCTACAAATTTAGAAA+TGG | + | chr6.2:82355429-82355448 | None:intergenic | 25.0% |
!!! | GTCCTCTAATTCATTTTAAT+TGG | - | chr6.2:82355396-82355415 | MS.gene80821:intron | 25.0% |
!!! | TAAGCCTTAAATATTTTGAC+AGG | - | chr6.2:82352969-82352988 | MS.gene80821:intron | 25.0% |
!!! | TAGTCCCTTAACTTTATTTT+AGG | - | chr6.2:82352294-82352313 | MS.gene80821:intron | 25.0% |
!!! | TGGTCTTGTAAATATCAAAA+GGG | - | chr6.2:82352771-82352790 | MS.gene80821:intron | 25.0% |
!!! | TTGGTCTTGTAAATATCAAA+AGG | - | chr6.2:82352770-82352789 | MS.gene80821:intron | 25.0% |
AAAAACCTCTTAATCCTATC+AGG | - | chr6.2:82352201-82352220 | MS.gene80821:intron | 30.0% | |
AAAACCCACTTATTATGGAA+CGG | - | chr6.2:82354161-82354180 | MS.gene80821:intron | 30.0% | |
AAAGGAAATCCATTTGCATT+TGG | + | chr6.2:82356317-82356336 | None:intergenic | 30.0% | |
AAATGTGAGTCATTAGTAGA+TGG | + | chr6.2:82355331-82355350 | None:intergenic | 30.0% | |
AAGGTTGTTTAATATGGATC+CGG | + | chr6.2:82351467-82351486 | None:intergenic | 30.0% | |
AATTATAGGTGATCAAACTG+TGG | - | chr6.2:82356130-82356149 | MS.gene80821:CDS | 30.0% | |
AATTTAGTCGCTAACTGTTA+GGG | - | chr6.2:82352040-82352059 | MS.gene80821:intron | 30.0% | |
AGTTTCATACCTGTGAAAAT+TGG | + | chr6.2:82351904-82351923 | None:intergenic | 30.0% | |
ATACACAAAATGGAATGAGT+TGG | - | chr6.2:82355473-82355492 | MS.gene80821:intron | 30.0% | |
ATATATACCTCTCTTAGCTT+TGG | + | chr6.2:82354579-82354598 | None:intergenic | 30.0% | |
ATATCTCTCTTAATCTGAGA+CGG | + | chr6.2:82353910-82353929 | None:intergenic | 30.0% | |
ATGTATAGTAGTTTCTTGCA+TGG | + | chr6.2:82350820-82350839 | None:intergenic | 30.0% | |
CTAAAAAATAAGCCTATGAC+AGG | - | chr6.2:82352932-82352951 | MS.gene80821:intron | 30.0% | |
CTATAGTACAACTAAAAGTG+GGG | + | chr6.2:82353787-82353806 | None:intergenic | 30.0% | |
CTGTCCTGTCAAAATATTTA+AGG | + | chr6.2:82352976-82352995 | None:intergenic | 30.0% | |
GTATATGAGAATGGACAAAA+AGG | - | chr6.2:82352490-82352509 | MS.gene80821:intron | 30.0% | |
GTCTATAGTACAACTAAAAG+TGG | + | chr6.2:82353789-82353808 | None:intergenic | 30.0% | |
GTTTCATACCTGTGAAAATT+GGG | + | chr6.2:82351903-82351922 | None:intergenic | 30.0% | |
TAATTTAGTCGCTAACTGTT+AGG | - | chr6.2:82352039-82352058 | MS.gene80821:intron | 30.0% | |
TACAACTCTCATTCAACAAA+AGG | - | chr6.2:82351869-82351888 | MS.gene80821:CDS | 30.0% | |
TAGTCCCTTAACTTAATTTC+AGG | + | chr6.2:82352557-82352576 | None:intergenic | 30.0% | |
TATTCTTGTAGTTGACATGT+TGG | - | chr6.2:82355723-82355742 | MS.gene80821:intron | 30.0% | |
TGCTCTTATGATACATGTTA+AGG | - | chr6.2:82354877-82354896 | MS.gene80821:intron | 30.0% | |
TTAATGCAAGCTTCATAGTT+AGG | + | chr6.2:82351633-82351652 | None:intergenic | 30.0% | |
TTACATTTACCTAAGTAGGT+TGG | + | chr6.2:82352227-82352246 | None:intergenic | 30.0% | |
TTAGCATAAAGATAGACTCT+AGG | + | chr6.2:82354645-82354664 | None:intergenic | 30.0% | |
TTCAATTCTCCAGAAAGTAA+TGG | + | chr6.2:82353384-82353403 | None:intergenic | 30.0% | |
TTCTTATGCAAACATAGACA+AGG | + | chr6.2:82352447-82352466 | None:intergenic | 30.0% | |
TTTGTTGAATGAGAGTTGTA+AGG | + | chr6.2:82351869-82351888 | None:intergenic | 30.0% | |
! | AACATTGCTTTGTTAACTCA+AGG | - | chr6.2:82355522-82355541 | MS.gene80821:intron | 30.0% |
! | AGAATCATCAAAAACCCTTT+TGG | + | chr6.2:82350670-82350689 | None:intergenic | 30.0% |
! | ATAAGCATTTTTGCCTGTTA+AGG | - | chr6.2:82354314-82354333 | MS.gene80821:intron | 30.0% |
! | ATGCTTTTAAATAGGCTAGT+AGG | - | chr6.2:82352876-82352895 | MS.gene80821:intron | 30.0% |
! | CTTAATTTCAGGTAACAGTT+TGG | + | chr6.2:82352546-82352565 | None:intergenic | 30.0% |
! | CTTTTCTATCTCTAAACTTC+CGG | + | chr6.2:82352005-82352024 | None:intergenic | 30.0% |
!! | AATGCAAATGGATTTCCTTT+TGG | - | chr6.2:82356317-82356336 | MS.gene80821:intron | 30.0% |
!! | CATTTTATAGCTTCTAGCTA+GGG | - | chr6.2:82353857-82353876 | MS.gene80821:CDS | 30.0% |
!! | CTTACCACTCTTTTAAGAAA+AGG | + | chr6.2:82350967-82350986 | None:intergenic | 30.0% |
!! | TCATTTTATAGCTTCTAGCT+AGG | - | chr6.2:82353856-82353875 | MS.gene80821:CDS | 30.0% |
!! | TGAATTAGATTTGTTGCAGT+CGG | + | chr6.2:82355902-82355921 | None:intergenic | 30.0% |
!!! | CTGTCATAGGCTTATTTTTT+AGG | + | chr6.2:82352934-82352953 | None:intergenic | 30.0% |
AACTCTAACTATCTAAGGGT+TGG | + | chr6.2:82351951-82351970 | None:intergenic | 35.0% | |
AAGATGGTCCAATGTTAAAC+CGG | - | chr6.2:82351445-82351464 | MS.gene80821:intron | 35.0% | |
ACATAGTGAAGGAAAGAACT+GGG | - | chr6.2:82353352-82353371 | MS.gene80821:intron | 35.0% | |
ACCAAGCAATAATGCACAAA+TGG | - | chr6.2:82356250-82356269 | MS.gene80821:intron | 35.0% | |
ACGCTAATTGCACATGTTAA+AGG | + | chr6.2:82355009-82355028 | None:intergenic | 35.0% | |
AGCTTTCCATCACAAAATGA+TGG | - | chr6.2:82354500-82354519 | MS.gene80821:intron | 35.0% | |
AGTTCACAGATAATTCTAGC+TGG | - | chr6.2:82353445-82353464 | MS.gene80821:intron | 35.0% | |
ATATGGATCCGGTTTAACAT+TGG | + | chr6.2:82351456-82351475 | None:intergenic | 35.0% | |
ATCTCGTACAAAACTAGTAG+AGG | - | chr6.2:82355969-82355988 | MS.gene80821:intron | 35.0% | |
ATTAAGAATCCAAGCACCAA+GGG | - | chr6.2:82351831-82351850 | MS.gene80821:CDS | 35.0% | |
ATTCTACTACCTGTGAAAGT+TGG | + | chr6.2:82353162-82353181 | None:intergenic | 35.0% | |
CACATGATGAAAATGAGAAC+TGG | - | chr6.2:82353307-82353326 | MS.gene80821:intron | 35.0% | |
CAGTTAATGTGCAAAACATG+CGG | - | chr6.2:82350920-82350939 | MS.gene80821:CDS | 35.0% | |
CGGAAGTTTAGAGATAGAAA+AGG | - | chr6.2:82352003-82352022 | MS.gene80821:intron | 35.0% | |
GAATTGAACCTTACTATGAG+AGG | - | chr6.2:82353396-82353415 | MS.gene80821:intron | 35.0% | |
GATCATATACTCATACTGGT+TGG | - | chr6.2:82355656-82355675 | MS.gene80821:intron | 35.0% | |
GATTTCATTCGTTTCTCGTT+TGG | + | chr6.2:82350714-82350733 | None:intergenic | 35.0% | |
GCATATTGGATTCAGAAGAA+TGG | + | chr6.2:82355225-82355244 | None:intergenic | 35.0% | |
GTACTTGAGCCAAATGAATA+AGG | - | chr6.2:82355292-82355311 | MS.gene80821:CDS | 35.0% | |
GTTAGCGACTAAATTAGAGA+TGG | + | chr6.2:82352035-82352054 | None:intergenic | 35.0% | |
GTTGAAACTTGAAATAGTGC+CGG | - | chr6.2:82351983-82352002 | MS.gene80821:intron | 35.0% | |
TAATGAAGGTGACCTATTGA+TGG | + | chr6.2:82351815-82351834 | None:intergenic | 35.0% | |
TACATAGTGAAGGAAAGAAC+TGG | - | chr6.2:82353351-82353370 | MS.gene80821:intron | 35.0% | |
TCAACAAGACTTATGCTTAG+AGG | + | chr6.2:82353204-82353223 | None:intergenic | 35.0% | |
TTCAGAAGAATGGTAAACTG+AGG | + | chr6.2:82355215-82355234 | None:intergenic | 35.0% | |
TTGAATGAGAGTTGTAAGGT+TGG | + | chr6.2:82351865-82351884 | None:intergenic | 35.0% | |
TTGTGGTATGAATAGCTATG+CGG | + | chr6.2:82351597-82351616 | None:intergenic | 35.0% | |
! | AACTTGTTTCTCATGGGTTA+GGG | - | chr6.2:82351090-82351109 | MS.gene80821:intron | 35.0% |
! | AAGATAGACTCTAGGAAATG+TGG | + | chr6.2:82354637-82354656 | None:intergenic | 35.0% |
! | AATGAGTTGGAGGAAATTGA+TGG | - | chr6.2:82355486-82355505 | MS.gene80821:intron | 35.0% |
! | ATGGGAGTAATCAAAGTGTT+AGG | - | chr6.2:82353508-82353527 | MS.gene80821:CDS | 35.0% |
! | CAAAACATGCGGAACTTTTT+AGG | - | chr6.2:82350931-82350950 | MS.gene80821:intron | 35.0% |
! | CAAAGTGTTAGGATTCAAGA+AGG | - | chr6.2:82353519-82353538 | MS.gene80821:CDS | 35.0% |
! | CAGATAATTCTAGCTGGATA+AGG | - | chr6.2:82353451-82353470 | MS.gene80821:intron | 35.0% |
! | CAGTTCTCATTTTCATCATG+TGG | + | chr6.2:82353309-82353328 | None:intergenic | 35.0% |
! | CATATTGGTCATATCGGTTA+AGG | + | chr6.2:82355862-82355881 | None:intergenic | 35.0% |
! | GACGACGAAGAGTATAAATT+CGG | + | chr6.2:82353075-82353094 | None:intergenic | 35.0% |
! | GGAACCTTTTCTTAAAAGAG+TGG | - | chr6.2:82350960-82350979 | MS.gene80821:intron | 35.0% |
! | TGAAATCAGATTTTGGGCAT+GGG | - | chr6.2:82355107-82355126 | MS.gene80821:intron | 35.0% |
! | TTGGAGAAGCATACACAAAA+TGG | - | chr6.2:82355463-82355482 | MS.gene80821:intron | 35.0% |
!! | ACCACAATCTCTAGCTTTAT+AGG | + | chr6.2:82353270-82353289 | None:intergenic | 35.0% |
!! | ATCTCTAGCTTTATAGGGTA+AGG | + | chr6.2:82353264-82353283 | None:intergenic | 35.0% |
!! | CCACAATCTCTAGCTTTATA+GGG | + | chr6.2:82353269-82353288 | None:intergenic | 35.0% |
!! | GAAGACTTGTTGGAACAATT+TGG | + | chr6.2:82353242-82353261 | None:intergenic | 35.0% |
!! | GTGGTTAACTTGTTTCTCAT+GGG | - | chr6.2:82351084-82351103 | MS.gene80821:intron | 35.0% |
!! | TAACTTGTTTCTCATGGGTT+AGG | - | chr6.2:82351089-82351108 | MS.gene80821:intron | 35.0% |
!! | TGTGGTTAACTTGTTTCTCA+TGG | - | chr6.2:82351083-82351102 | MS.gene80821:intron | 35.0% |
!! | TTTGTTGTTAAGGATCATCG+TGG | - | chr6.2:82353555-82353574 | MS.gene80821:CDS | 35.0% |
!!! | TAGGTGAAGTTGGTTTTTTG+TGG | + | chr6.2:82351614-82351633 | None:intergenic | 35.0% |
!!! | TATTTTGACAGGACAGACTT+AGG | - | chr6.2:82352980-82352999 | MS.gene80821:intron | 35.0% |
AAACATCATCCACCAATGCT+TGG | - | chr6.2:82354438-82354457 | MS.gene80821:intron | 40.0% | |
AACTCTACGATTAGTAAGGG+TGG | + | chr6.2:82353038-82353057 | None:intergenic | 40.0% | |
AACTTCGTTCCAACTTTCAC+AGG | - | chr6.2:82353150-82353169 | MS.gene80821:intron | 40.0% | |
AAGTGGGGACCATCTTAATA+AGG | + | chr6.2:82353772-82353791 | None:intergenic | 40.0% | |
ACCACAACACCAAATGCAAA+TGG | - | chr6.2:82356305-82356324 | MS.gene80821:intron | 40.0% | |
ACTCTACGATTAGTAAGGGT+GGG | + | chr6.2:82353037-82353056 | None:intergenic | 40.0% | |
ACTGTTGCTGGATGATTGTT+TGG | + | chr6.2:82356164-82356183 | None:intergenic | 40.0% | |
AGGTCGAGTTAGACTTTGTA+AGG | + | chr6.2:82353006-82353025 | None:intergenic | 40.0% | |
AGTAAGGGTGGGAATAGATT+AGG | + | chr6.2:82353026-82353045 | None:intergenic | 40.0% | |
AGTGCATACGAAGCAAAAGA+AGG | + | chr6.2:82350744-82350763 | None:intergenic | 40.0% | |
ATAGGGTAAGGAAGACTTGT+TGG | + | chr6.2:82353252-82353271 | None:intergenic | 40.0% | |
ATCACAAAATGATGGCCAAG+GGG | - | chr6.2:82354508-82354527 | MS.gene80821:intron | 40.0% | |
ATTTGGTTAGGTGAGTGAAG+AGG | - | chr6.2:82351756-82351775 | MS.gene80821:intron | 40.0% | |
CAATTCCACCTCTCATAGTA+AGG | + | chr6.2:82353407-82353426 | None:intergenic | 40.0% | |
CATACCTGTGAAAATTGGGA+GGG | + | chr6.2:82351899-82351918 | None:intergenic | 40.0% | |
CATCACAAAATGATGGCCAA+GGG | - | chr6.2:82354507-82354526 | MS.gene80821:intron | 40.0% | |
CATCTTTCCCTATCTTCTCT+AGG | + | chr6.2:82354479-82354498 | None:intergenic | 40.0% | |
CATTAAGAATCCAAGCACCA+AGG | - | chr6.2:82351830-82351849 | MS.gene80821:CDS | 40.0% | |
CCCTATAAAGCTAGAGATTG+TGG | - | chr6.2:82353266-82353285 | MS.gene80821:intron | 40.0% | |
CTAGAGAAGATAGGGAAAGA+TGG | - | chr6.2:82354477-82354496 | MS.gene80821:intron | 40.0% | |
CTAGAGATTGTGGTACTTGA+TGG | - | chr6.2:82353276-82353295 | MS.gene80821:intron | 40.0% | |
GATAAGGAGCAGGAAGTTTA+GGG | - | chr6.2:82353467-82353486 | MS.gene80821:intron | 40.0% | |
GCCATTTGTGCATTATTGCT+TGG | + | chr6.2:82356254-82356273 | None:intergenic | 40.0% | |
GCTTCATAGTTAGGTGAAGT+TGG | + | chr6.2:82351624-82351643 | None:intergenic | 40.0% | |
GGCAACTCTACGATTAGTAA+GGG | + | chr6.2:82353041-82353060 | None:intergenic | 40.0% | |
GGTGCTTGGATTCTTAATGA+AGG | + | chr6.2:82351829-82351848 | None:intergenic | 40.0% | |
GTGAACTCTATGTCTCCAAT+TGG | + | chr6.2:82353432-82353451 | None:intergenic | 40.0% | |
TATGTCTCTATAGAGCGATC+TGG | + | chr6.2:82352077-82352096 | None:intergenic | 40.0% | |
TATGTTGTTGCTACTGTTGC+TGG | + | chr6.2:82356176-82356195 | None:intergenic | 40.0% | |
TCATACCTGTGAAAATTGGG+AGG | + | chr6.2:82351900-82351919 | None:intergenic | 40.0% | |
TGAACCCATTAATGTCCCTA+AGG | + | chr6.2:82356391-82356410 | None:intergenic | 40.0% | |
TGATACTCCAAAGCTAAGAG+AGG | - | chr6.2:82354569-82354588 | MS.gene80821:intron | 40.0% | |
TGCATCTGTGTCAAATGTCA+TGG | + | chr6.2:82351005-82351024 | None:intergenic | 40.0% | |
TGGCAACTCTACGATTAGTA+AGG | + | chr6.2:82353042-82353061 | None:intergenic | 40.0% | |
TTGAACCTTACTATGAGAGG+TGG | - | chr6.2:82353399-82353418 | MS.gene80821:intron | 40.0% | |
TTGCAGTTATGGTGAGTCAT+GGG | - | chr6.2:82353490-82353509 | MS.gene80821:intron | 40.0% | |
TTGGAACGAAGTTATCTCAG+TGG | + | chr6.2:82353143-82353162 | None:intergenic | 40.0% | |
! | ATGCAATGACTTGTGACATG+GGG | - | chr6.2:82355165-82355184 | MS.gene80821:intron | 40.0% |
! | CACAAAATGGAATGAGTTGG+AGG | - | chr6.2:82355476-82355495 | MS.gene80821:intron | 40.0% |
! | CATGCAATGACTTGTGACAT+GGG | - | chr6.2:82355164-82355183 | MS.gene80821:intron | 40.0% |
! | CTGAAATCAGATTTTGGGCA+TGG | - | chr6.2:82355106-82355125 | MS.gene80821:intron | 40.0% |
! | GAAATCAGATTTTGGGCATG+GGG | - | chr6.2:82355108-82355127 | MS.gene80821:intron | 40.0% |
! | GAAGTTTAGGGTTGCAGTTA+TGG | - | chr6.2:82353479-82353498 | MS.gene80821:intron | 40.0% |
! | TAAGGCTTAAGCATTGTCAG+CGG | + | chr6.2:82352958-82352977 | None:intergenic | 40.0% |
!! | GACTGAGGCATTTGTTGTTA+AGG | - | chr6.2:82353545-82353564 | MS.gene80821:CDS | 40.0% |
!! | TCCATTTGCATTTGGTGTTG+TGG | + | chr6.2:82356309-82356328 | None:intergenic | 40.0% |
!! | TGCATTTGGTGTTGTGGTAT+AGG | + | chr6.2:82356303-82356322 | None:intergenic | 40.0% |
ACATGGGGAGCAAGATCTAT+AGG | - | chr6.2:82355180-82355199 | MS.gene80821:CDS | 45.0% | |
ACCCACTTATTATGGAACGG+AGG | - | chr6.2:82354164-82354183 | MS.gene80821:intron | 45.0% | |
AGAGGTGGAATTGCACCAAT+TGG | - | chr6.2:82353414-82353433 | MS.gene80821:intron | 45.0% | |
AGTAGAATACTCGACGCTGA+AGG | - | chr6.2:82353174-82353193 | MS.gene80821:intron | 45.0% | |
AGTCGCTAACTGTTAGGGAT+GGG | - | chr6.2:82352045-82352064 | MS.gene80821:intron | 45.0% | |
ATGGAACGGAGGGAGTAATA+GGG | - | chr6.2:82354175-82354194 | MS.gene80821:intron | 45.0% | |
CAGGCCTTAGGGACATTAAT+GGG | - | chr6.2:82356384-82356403 | MS.gene80821:CDS | 45.0% | |
CCACACAAGACATGTTGTAG+TGG | - | chr6.2:82355689-82355708 | MS.gene80821:intron | 45.0% | |
CCACTACAACATGTCTTGTG+TGG | + | chr6.2:82355692-82355711 | None:intergenic | 45.0% | |
CCATCACAAAATGATGGCCA+AGG | - | chr6.2:82354506-82354525 | MS.gene80821:intron | 45.0% | |
CCCACTTATTATGGAACGGA+GGG | - | chr6.2:82354165-82354184 | MS.gene80821:intron | 45.0% | |
CCCTCCGTTCCATAATAAGT+GGG | + | chr6.2:82354168-82354187 | None:intergenic | 45.0% | |
GAAGAGGTGGATAGAGCAAT+TGG | - | chr6.2:82351772-82351791 | MS.gene80821:CDS | 45.0% | |
GAAGGTGACCTATTGATGGA+AGG | + | chr6.2:82351811-82351830 | None:intergenic | 45.0% | |
GAATGGTAAACTGAGGTCCA+CGG | + | chr6.2:82355208-82355227 | None:intergenic | 45.0% | |
GCTTTCCACCTTCCATCAAT+AGG | - | chr6.2:82351800-82351819 | MS.gene80821:CDS | 45.0% | |
GGATAAGGAGCAGGAAGTTT+AGG | - | chr6.2:82353466-82353485 | MS.gene80821:intron | 45.0% | |
GGGAAGAGACCATTACTTTC+TGG | - | chr6.2:82353372-82353391 | MS.gene80821:intron | 45.0% | |
GTTGCAGTTATGGTGAGTCA+TGG | - | chr6.2:82353489-82353508 | MS.gene80821:intron | 45.0% | |
TAGTCGCTAACTGTTAGGGA+TGG | - | chr6.2:82352044-82352063 | MS.gene80821:intron | 45.0% | |
TATGCGGAGACTACTGCAAT+TGG | + | chr6.2:82351581-82351600 | None:intergenic | 45.0% | |
TATGGAACGGAGGGAGTAAT+AGG | - | chr6.2:82354174-82354193 | MS.gene80821:intron | 45.0% | |
TCAGGCCTTAGGGACATTAA+TGG | - | chr6.2:82356383-82356402 | MS.gene80821:CDS | 45.0% | |
TCCCTCCGTTCCATAATAAG+TGG | + | chr6.2:82354169-82354188 | None:intergenic | 45.0% | |
TGGGGATGTCTGATAGAATG+TGG | - | chr6.2:82355126-82355145 | MS.gene80821:intron | 45.0% | |
! | AAGGTTGGTTGTTGATCCCT+TGG | + | chr6.2:82351850-82351869 | None:intergenic | 45.0% |
! | AGCAAGATCTATAGGTACCG+TGG | - | chr6.2:82355188-82355207 | MS.gene80821:CDS | 45.0% |
! | ATTCTAGCTGGATAAGGAGC+AGG | - | chr6.2:82353457-82353476 | MS.gene80821:intron | 45.0% |
! | CCTTGGCCATCATTTTGTGA+TGG | + | chr6.2:82354509-82354528 | None:intergenic | 45.0% |
! | CTTTCCCTCCCAATTTTCAC+AGG | - | chr6.2:82351892-82351911 | MS.gene80821:CDS | 45.0% |
! | GATTCAAGAAGGCATGACTG+AGG | - | chr6.2:82353530-82353549 | MS.gene80821:CDS | 45.0% |
! | GCATGCAATGACTTGTGACA+TGG | - | chr6.2:82355163-82355182 | MS.gene80821:intron | 45.0% |
! | GTTGGCCTGATAGGATTAAG+AGG | + | chr6.2:82352209-82352228 | None:intergenic | 45.0% |
!! | GCGGAACTTTTTAGGAGCTT+TGG | - | chr6.2:82350939-82350958 | MS.gene80821:intron | 45.0% |
!! | GGGACATTAATGGGTTCACA+AGG | - | chr6.2:82356393-82356412 | MS.gene80821:CDS | 45.0% |
!! | TTTCTCATGGGTTAGGGTCT+GGG | - | chr6.2:82351096-82351115 | MS.gene80821:intron | 45.0% |
!!! | GGATTTCCTTTTGGCTTCAC+AGG | - | chr6.2:82356326-82356345 | MS.gene80821:intron | 45.0% |
!!! | ATATTTTATTAAAAATAAGA+TGG | - | chr6.2:82351429-82351448 | MS.gene80821:intron | 5.0% |
!!! | ATTCATTTTTTTATTAAAAA+TGG | + | chr6.2:82351377-82351396 | None:intergenic | 5.0% |
CAATGCTTGGCGATGATGTG+TGG | - | chr6.2:82354451-82354470 | MS.gene80821:intron | 50.0% | |
CACAAATGGCAAGCAGTGAG+TGG | - | chr6.2:82356264-82356283 | MS.gene80821:intron | 50.0% | |
CACACATCATCGCCAAGCAT+TGG | + | chr6.2:82354453-82354472 | None:intergenic | 50.0% | |
CACAGGCTCACAATCAGATG+AGG | - | chr6.2:82356343-82356362 | MS.gene80821:CDS | 50.0% | |
CCTATCAGGCCAACCTACTT+AGG | - | chr6.2:82352215-82352234 | MS.gene80821:intron | 50.0% | |
GATGAGGACATGACACCTTC+AGG | - | chr6.2:82356359-82356378 | MS.gene80821:CDS | 50.0% | |
GATGGCCAAGGGGATCAAAA+CGG | - | chr6.2:82354518-82354537 | MS.gene80821:intron | 50.0% | |
GGTGACCTATTGATGGAAGG+TGG | + | chr6.2:82351808-82351827 | None:intergenic | 50.0% | |
TGGTTAGGTGAGTGAAGAGG+TGG | - | chr6.2:82351759-82351778 | MS.gene80821:intron | 50.0% | |
TGTGAGCCTGTGAAGCCAAA+AGG | + | chr6.2:82356335-82356354 | None:intergenic | 50.0% | |
TGTGGCGCCTAGAGAAGATA+GGG | - | chr6.2:82354469-82354488 | MS.gene80821:intron | 50.0% | |
TTGGCTCAAGTACTCTCTGC+TGG | + | chr6.2:82355285-82355304 | None:intergenic | 50.0% | |
! | ACCTTCAGGTTCAGGCCTTA+GGG | - | chr6.2:82356373-82356392 | MS.gene80821:CDS | 50.0% |
! | GACATGACACCTTCAGGTTC+AGG | - | chr6.2:82356365-82356384 | MS.gene80821:CDS | 50.0% |
!! | ACATCATCGCCAAGCATTGG+TGG | + | chr6.2:82354450-82354469 | None:intergenic | 50.0% |
!! | CCTAAGTAGGTTGGCCTGAT+AGG | + | chr6.2:82352218-82352237 | None:intergenic | 50.0% |
!! | GTTGTTGATCCCTTGGTGCT+TGG | + | chr6.2:82351843-82351862 | None:intergenic | 50.0% |
!! | GTTTCTCATGGGTTAGGGTC+TGG | - | chr6.2:82351095-82351114 | MS.gene80821:intron | 50.0% |
!! | TTCTCATGGGTTAGGGTCTG+GGG | - | chr6.2:82351097-82351116 | MS.gene80821:intron | 50.0% |
!! | TTGCACCGTTTTGATCCCCT+TGG | + | chr6.2:82354526-82354545 | None:intergenic | 50.0% |
CATTGTCAGCGGCCTGTCAT+AGG | + | chr6.2:82352947-82352966 | None:intergenic | 55.0% | |
GTGTGGCGCCTAGAGAAGAT+AGG | - | chr6.2:82354468-82354487 | MS.gene80821:intron | 55.0% | |
TCCCTAAGGCCTGAACCTGA+AGG | + | chr6.2:82356377-82356396 | None:intergenic | 55.0% | |
! | CACCTTCAGGTTCAGGCCTT+AGG | - | chr6.2:82356372-82356391 | MS.gene80821:CDS | 55.0% |
!! | TGGCTCGGTCTGTCTGTCAT+AGG | + | chr6.2:82352108-82352127 | None:intergenic | 55.0% |
!! | TCATGGGTTAGGGTCTGGGG+TGG | - | chr6.2:82351100-82351119 | MS.gene80821:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 82350660 | 82356424 | 82350660 | ID=MS.gene80821 |
chr6.2 | mRNA | 82350660 | 82356424 | 82350660 | ID=MS.gene80821.t1;Parent=MS.gene80821 |
chr6.2 | exon | 82356330 | 82356424 | 82356330 | ID=MS.gene80821.t1.exon1;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82356330 | 82356424 | 82356330 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
chr6.2 | exon | 82356103 | 82356178 | 82356103 | ID=MS.gene80821.t1.exon2;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82356103 | 82356178 | 82356103 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
chr6.2 | exon | 82355171 | 82355318 | 82355171 | ID=MS.gene80821.t1.exon3;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82355171 | 82355318 | 82355171 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
chr6.2 | exon | 82353502 | 82353912 | 82353502 | ID=MS.gene80821.t1.exon4;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82353502 | 82353912 | 82353502 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
chr6.2 | exon | 82352494 | 82352654 | 82352494 | ID=MS.gene80821.t1.exon5;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82352494 | 82352654 | 82352494 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
chr6.2 | exon | 82351771 | 82351968 | 82351771 | ID=MS.gene80821.t1.exon6;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82351771 | 82351968 | 82351771 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
chr6.2 | exon | 82351541 | 82351640 | 82351541 | ID=MS.gene80821.t1.exon7;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82351541 | 82351640 | 82351541 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
chr6.2 | exon | 82350660 | 82350946 | 82350660 | ID=MS.gene80821.t1.exon8;Parent=MS.gene80821.t1 |
chr6.2 | CDS | 82350660 | 82350946 | 82350660 | ID=cds.MS.gene80821.t1;Parent=MS.gene80821.t1 |
Gene Sequence |
Protein sequence |