Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81678.t1 | XP_003616826.1 | 93.3 | 373 | 25 | 0 | 1 | 373 | 25 | 397 | 5.10E-187 | 663.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81678.t1 | Q9SF32 | 28.8 | 229 | 142 | 6 | 29 | 244 | 60 | 280 | 1.4e-07 | 58.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81678.t1 | G7K7F4 | 93.3 | 373 | 25 | 0 | 1 | 373 | 25 | 397 | 3.7e-187 | 663.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene81678 | 0.832492 | 9.17E-56 | -1.69E-46 |
| MS.gene049341 | MS.gene81678 | 0.806253 | 9.00E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene81678 | 0.808364 | 3.21E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene81678 | 0.829214 | 5.84E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene81678 | 0.80401 | 2.65E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene81678 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene81678 | 0.820745 | 5.83E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene81678 | 0.826109 | 3.25E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene81678 | 0.823947 | 1.05E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene81678 | 0.811983 | 5.33E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene81678 | 0.838268 | 3.18E-57 | -1.69E-46 |
| MS.gene051102 | MS.gene81678 | 0.823591 | 1.28E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene81678 | 0.825442 | 4.68E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene81678 | 0.841058 | 5.98E-58 | -1.69E-46 |
| MS.gene05157 | MS.gene81678 | 0.820334 | 7.24E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene81678 | 0.849764 | 2.62E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene81678 | 0.851963 | 6.30E-61 | -1.69E-46 |
| MS.gene051744 | MS.gene81678 | 0.809441 | 1.89E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene81678 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene81678 | 0.808351 | 3.23E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene81678 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene81678 | 0.80003 | 1.74E-48 | -1.69E-46 |
| MS.gene052459 | MS.gene81678 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene81678 | 0.852917 | 3.37E-61 | -1.69E-46 |
| MS.gene052561 | MS.gene81678 | 0.82863 | 8.08E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene81678 | 0.806911 | 6.54E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene81678 | 0.844263 | 8.42E-59 | -1.69E-46 |
| MS.gene052863 | MS.gene81678 | 0.821863 | 3.22E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene81678 | 0.830276 | 3.22E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene81678 | 0.873606 | 1.29E-67 | -1.69E-46 |
| MS.gene053164 | MS.gene81678 | 0.805695 | 1.18E-49 | -1.69E-46 |
| MS.gene053174 | MS.gene81678 | 0.82861 | 8.17E-55 | -1.69E-46 |
| MS.gene053581 | MS.gene81678 | 0.860972 | 1.42E-63 | -1.69E-46 |
| MS.gene054550 | MS.gene81678 | 0.807649 | 4.56E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene81678 | 0.866752 | 2.27E-65 | -1.69E-46 |
| MS.gene05458 | MS.gene81678 | 0.811299 | 7.50E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene81678 | 0.802267 | 6.08E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene81678 | 0.807627 | 4.61E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene81678 | 0.863655 | 2.13E-64 | -1.69E-46 |
| MS.gene055466 | MS.gene81678 | 0.869228 | 3.62E-66 | -1.69E-46 |
| MS.gene055468 | MS.gene81678 | 0.862355 | 5.37E-64 | -1.69E-46 |
| MS.gene055469 | MS.gene81678 | 0.849177 | 3.82E-60 | -1.69E-46 |
| MS.gene055513 | MS.gene81678 | 0.805443 | 1.33E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene81678 | 0.853921 | 1.74E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene81678 | -0.869574 | 2.80E-66 | -1.69E-46 |
| MS.gene055818 | MS.gene81678 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene81678 | 0.863064 | 3.25E-64 | -1.69E-46 |
| MS.gene055891 | MS.gene81678 | 0.853665 | 2.06E-61 | -1.69E-46 |
| MS.gene056043 | MS.gene81678 | -0.865168 | 7.18E-65 | -1.69E-46 |
| MS.gene056308 | MS.gene81678 | 0.830277 | 3.21E-55 | -1.69E-46 |
| MS.gene056507 | MS.gene81678 | 0.809048 | 2.29E-50 | -1.69E-46 |
| MS.gene056522 | MS.gene81678 | -0.804929 | 1.71E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene81678 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene81678 | 0.836633 | 8.35E-57 | -1.69E-46 |
| MS.gene058852 | MS.gene81678 | 0.811191 | 7.92E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene81678 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene058909 | MS.gene81678 | 0.801464 | 8.89E-49 | -1.69E-46 |
| MS.gene058945 | MS.gene81678 | 0.806675 | 7.33E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene81678 | 0.823967 | 1.04E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene81678 | 0.808193 | 3.49E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene81678 | 0.817979 | 2.49E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene81678 | 0.835387 | 1.73E-56 | -1.69E-46 |
| MS.gene060637 | MS.gene81678 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene060884 | MS.gene81678 | 0.814618 | 1.41E-51 | -1.69E-46 |
| MS.gene060886 | MS.gene81678 | 0.806415 | 8.32E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81678.t1 | MTR_5g084680 | 93.298 | 373 | 25 | 0 | 1 | 373 | 25 | 397 | 0.0 | 718 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81678.t1 | AT5G35670 | 37.310 | 394 | 167 | 10 | 2 | 334 | 27 | 401 | 2.34e-64 | 211 |
| MS.gene81678.t1 | AT3G52290 | 32.370 | 173 | 102 | 4 | 80 | 241 | 107 | 275 | 1.15e-12 | 69.3 |
| MS.gene81678.t1 | AT3G09710 | 29.412 | 221 | 135 | 6 | 35 | 242 | 66 | 278 | 1.19e-12 | 69.3 |
| MS.gene81678.t1 | AT2G26410 | 33.520 | 179 | 98 | 6 | 80 | 242 | 147 | 320 | 3.54e-12 | 68.2 |
| MS.gene81678.t1 | AT2G26410 | 33.520 | 179 | 98 | 6 | 80 | 242 | 147 | 320 | 3.54e-12 | 68.2 |
Find 39 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATTTGGAGTTTGAATT+TGG | 0.239655 | 5.1:-66622847 | None:intergenic |
| TTCTTCTTCATTCAATGATT+TGG | 0.248388 | 5.1:-66622860 | None:intergenic |
| GAAGATTTGTTGAGTGATAA+AGG | 0.252466 | 5.1:+66622778 | MS.gene81678:CDS |
| ACAAGATTCTTAGATGCTTC+TGG | 0.335180 | 5.1:+66624835 | MS.gene81678:CDS |
| GTCTTGCTTATATCTTGCTT+TGG | 0.338818 | 5.1:-66625773 | None:intergenic |
| CTTAATATCCTTGTTAGCAT+TGG | 0.375292 | 5.1:-66625744 | None:intergenic |
| GAGATCATAAGCTCAGAAAA+TGG | 0.385879 | 5.1:+66623705 | MS.gene81678:CDS |
| AAGTCCAGACAGAAAATCTA+TGG | 0.389860 | 5.1:+66623755 | MS.gene81678:CDS |
| TTAAAATTAGTCTTTGTTGC+TGG | 0.390747 | 5.1:-66624958 | None:intergenic |
| ACTCAACAAATCTTCTTGTA+TGG | 0.397260 | 5.1:-66622770 | None:intergenic |
| GGCTTATGCTTTCTCACAAC+AGG | 0.400902 | 5.1:+66624461 | MS.gene81678:CDS |
| ACGTCAGTTGAAGTACAAAC+AGG | 0.432498 | 5.1:+66623780 | MS.gene81678:CDS |
| TCATCATGAAATTGATAACT+TGG | 0.439924 | 5.1:-66625015 | None:intergenic |
| ATCAGCATATAGAAGTTTCA+AGG | 0.448132 | 5.1:+66622900 | MS.gene81678:CDS |
| AACTAGAGCAATAAAGCAAA+AGG | 0.480169 | 5.1:+66623875 | MS.gene81678:CDS |
| AAGCAAGATATAAGCAAGAC+AGG | 0.513612 | 5.1:+66625776 | MS.gene81678:CDS |
| ATTCTTCCGAAAATAGAAGA+TGG | 0.516203 | 5.1:+66622647 | MS.gene81678:CDS |
| AATGAGGATGCAAGACAGAA+TGG | 0.520392 | 5.1:+66624410 | MS.gene81678:CDS |
| TTTCATACTGCTTCATCGCA+TGG | 0.540116 | 5.1:-66624777 | None:intergenic |
| ACATGGAACAAAATATGAGC+TGG | 0.546448 | 5.1:+66624698 | MS.gene81678:CDS |
| TTTAAATGAGAAAACTTCAG+TGG | 0.556481 | 5.1:-66623808 | None:intergenic |
| TGAGCTGGAGTTGGCTCGAA+AGG | 0.559271 | 5.1:+66624713 | MS.gene81678:CDS |
| TGGCTCAACCAATGCTAACA+AGG | 0.561036 | 5.1:+66625736 | MS.gene81678:CDS |
| AACAAAATATGAGCTGGAGT+TGG | 0.563437 | 5.1:+66624704 | MS.gene81678:CDS |
| AAGCTAGGAGAACTGTGTCT+AGG | 0.575861 | 5.1:+66624980 | MS.gene81678:CDS |
| TCGAAAGGTGGATGGCAACT+CGG | 0.586917 | 5.1:+66624728 | MS.gene81678:CDS |
| ATTTCATGATGAACATACAA+AGG | 0.587203 | 5.1:+66625026 | MS.gene81678:CDS |
| AAGCTGAATCTTCTTCTGCA+AGG | 0.601371 | 5.1:-66622714 | None:intergenic |
| AACAAGGAGAGAAAGAGCAC+TGG | 0.604548 | 5.1:+66624440 | MS.gene81678:CDS |
| CTAGGAGAACTGTGTCTAGG+AGG | 0.606464 | 5.1:+66624983 | MS.gene81678:CDS |
| GAGTTGGCTCGAAAGGTGGA+TGG | 0.611180 | 5.1:+66624720 | MS.gene81678:CDS |
| TTACAGGTAAGCATGAAAGA+TGG | 0.615493 | 5.1:+66625716 | MS.gene81678:intron |
| GAATAGTTATCAAATTGAAG+TGG | 0.618381 | 5.1:-66624895 | None:intergenic |
| GCTGGAGTTGGCTCGAAAGG+TGG | 0.621737 | 5.1:+66624716 | MS.gene81678:CDS |
| ACAGAATGGAAGCAGCAACA+AGG | 0.622814 | 5.1:+66624424 | MS.gene81678:CDS |
| TCAGTTAAATCATACTTGTG+TGG | 0.635037 | 5.1:+66622673 | MS.gene81678:CDS |
| CGTCAGTTGAAGTACAAACA+GGG | 0.665346 | 5.1:+66623781 | MS.gene81678:CDS |
| AGATTCTTAGATGCTTCTGG+TGG | 0.671963 | 5.1:+66624838 | MS.gene81678:CDS |
| ACTAGCAAAACATAACAACA+TGG | 0.703514 | 5.1:+66624681 | MS.gene81678:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTATATTTATAATA+TGG | - | chr5.1:66625691-66625710 | None:intergenic | 0.0% |
| !! | ATTATTATTAAATAAGAGAT+TGG | + | chr5.1:66624074-66624093 | MS.gene81678:intron | 10.0% |
| !! | TTAATATTGAAAAAGATTGA+AGG | - | chr5.1:66623512-66623531 | None:intergenic | 15.0% |
| !! | TTATATTTATAATATGGTAG+TGG | - | chr5.1:66625685-66625704 | None:intergenic | 15.0% |
| !!! | AAATATTTTTAAAGATCCAA+TGG | + | chr5.1:66623161-66623180 | MS.gene81678:intron | 15.0% |
| !!! | AATACTAATTTTTTTATGCA+TGG | - | chr5.1:66623622-66623641 | None:intergenic | 15.0% |
| !!! | CATAATTTTTTGTAATATCA+CGG | + | chr5.1:66623344-66623363 | MS.gene81678:intron | 15.0% |
| !!! | TAATAACATTGAAATTTTTC+AGG | + | chr5.1:66624347-66624366 | MS.gene81678:intron | 15.0% |
| !!! | TATAATTTTTATGTTGTTAC+AGG | + | chr5.1:66625700-66625719 | MS.gene81678:intron | 15.0% |
| !!! | TATCATTTATATGACTTTTA+TGG | + | chr5.1:66623121-66623140 | MS.gene81678:intron | 15.0% |
| !! | AAAAAAAAATCTTGATGTCA+TGG | + | chr5.1:66625430-66625449 | MS.gene81678:intron | 20.0% |
| !! | ATGGAAATGGAAAAAATAAA+GGG | - | chr5.1:66623489-66623508 | None:intergenic | 20.0% |
| !! | CGTGATATTACAAAAAATTA+TGG | - | chr5.1:66623346-66623365 | None:intergenic | 20.0% |
| !! | TTAATTTATGTGTCAAAACT+TGG | + | chr5.1:66624273-66624292 | MS.gene81678:intron | 20.0% |
| !! | TTCATAGTGTAATATAAACA+AGG | + | chr5.1:66625325-66625344 | MS.gene81678:intron | 20.0% |
| !!! | AATCTATTTTTGAAACCTTT+TGG | - | chr5.1:66623048-66623067 | None:intergenic | 20.0% |
| !!! | ATAAAGTTTAAAGTATGTTC+TGG | - | chr5.1:66624052-66624071 | None:intergenic | 20.0% |
| !!! | TAAATGATAGTAATTTGTGA+TGG | - | chr5.1:66623110-66623129 | None:intergenic | 20.0% |
| !!! | TGACAATGTAAAATGTTTTA+AGG | - | chr5.1:66623085-66623104 | None:intergenic | 20.0% |
| ! | AAATATGTAAAGAAGATGCT+TGG | + | chr5.1:66624134-66624153 | MS.gene81678:intron | 25.0% |
| ! | AGTTTGACATAGTAAATTCA+AGG | + | chr5.1:66624578-66624597 | MS.gene81678:intron | 25.0% |
| ! | ATCAGAAAATAATAGAAGAG+TGG | + | chr5.1:66624107-66624126 | MS.gene81678:intron | 25.0% |
| ! | ATTTCATGATGAACATACAA+AGG | + | chr5.1:66625026-66625045 | MS.gene81678:CDS | 25.0% |
| ! | CATTAATTGGTTACTTCAAT+TGG | + | chr5.1:66622936-66622955 | MS.gene81678:intron | 25.0% |
| ! | GAATAGTTATCAAATTGAAG+TGG | - | chr5.1:66624898-66624917 | None:intergenic | 25.0% |
| ! | GATGGAAATGGAAAAAATAA+AGG | - | chr5.1:66623490-66623509 | None:intergenic | 25.0% |
| ! | GTTTGACATAGTAAATTCAA+GGG | + | chr5.1:66624579-66624598 | MS.gene81678:intron | 25.0% |
| ! | TATTGAAAAAGATTGAAGGA+TGG | - | chr5.1:66623508-66623527 | None:intergenic | 25.0% |
| ! | TCAGAAAGAATTATCAGTTA+AGG | + | chr5.1:66624020-66624039 | MS.gene81678:intron | 25.0% |
| ! | TGAGTTCACTAATCATTAAT+TGG | + | chr5.1:66622923-66622942 | MS.gene81678:intron | 25.0% |
| ! | TGGAAATGGAAAAAATAAAG+GGG | - | chr5.1:66623488-66623507 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATTCAATGATT+TGG | - | chr5.1:66622863-66622882 | None:intergenic | 25.0% |
| ! | TTGAATGTAACTAAATGTGT+TGG | - | chr5.1:66625241-66625260 | None:intergenic | 25.0% |
| ! | TTTAAATGAGAAAACTTCAG+TGG | - | chr5.1:66623811-66623830 | None:intergenic | 25.0% |
| !! | AAACTTTAAAGGTAAACTCA+TGG | - | chr5.1:66623015-66623034 | None:intergenic | 25.0% |
| !! | AATGATTTGGAGTTTGAATT+TGG | - | chr5.1:66622850-66622869 | None:intergenic | 25.0% |
| !! | ACTGAAGTTTTCTCATTTAA+AGG | + | chr5.1:66623810-66623829 | MS.gene81678:CDS | 25.0% |
| !! | GATCTATTTAAAACTAGTTG+AGG | - | chr5.1:66625101-66625120 | None:intergenic | 25.0% |
| !! | TCATCATGAAATTGATAACT+TGG | - | chr5.1:66625018-66625037 | None:intergenic | 25.0% |
| !! | TGATATCCATCTTCTATTTT+CGG | - | chr5.1:66622656-66622675 | None:intergenic | 25.0% |
| !!! | AATTTGAACCAACTTTTTCT+TGG | - | chr5.1:66622991-66623010 | None:intergenic | 25.0% |
| !!! | CAAAGACTAATTTTAAAGCT+AGG | + | chr5.1:66624965-66624984 | MS.gene81678:CDS | 25.0% |
| !!! | CACAGTTTAAAACCTTTTTA+TGG | + | chr5.1:66623373-66623392 | MS.gene81678:intron | 25.0% |
| !!! | CATAAAAAGGTTTTAAACTG+TGG | - | chr5.1:66623375-66623394 | None:intergenic | 25.0% |
| !!! | CATTGATTTAGTCTCTAAAA+CGG | + | chr5.1:66624528-66624547 | MS.gene81678:intron | 25.0% |
| !!! | TGAAATTTTTCAGGATGATT+GGG | + | chr5.1:66624356-66624375 | MS.gene81678:intron | 25.0% |
| !!! | TTAAAATTAGTCTTTGTTGC+TGG | - | chr5.1:66624961-66624980 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTTCAGGATGAT+TGG | + | chr5.1:66624355-66624374 | MS.gene81678:intron | 25.0% |
| AAAAGATTGAAGGATGGAAA+TGG | - | chr5.1:66623502-66623521 | None:intergenic | 30.0% | |
| AACTAGAGCAATAAAGCAAA+AGG | + | chr5.1:66623875-66623894 | MS.gene81678:CDS | 30.0% | |
| AATGTAACTAAATGTGTTGG+TGG | - | chr5.1:66625238-66625257 | None:intergenic | 30.0% | |
| ACACATTGATCTCCATAAAA+AGG | - | chr5.1:66623388-66623407 | None:intergenic | 30.0% | |
| ACTAGCAAAACATAACAACA+TGG | + | chr5.1:66624681-66624700 | MS.gene81678:CDS | 30.0% | |
| ACTCAACAAATCTTCTTGTA+TGG | - | chr5.1:66622773-66622792 | None:intergenic | 30.0% | |
| ATCAGCATATAGAAGTTTCA+AGG | + | chr5.1:66622900-66622919 | MS.gene81678:CDS | 30.0% | |
| ATTCTTCCGAAAATAGAAGA+TGG | + | chr5.1:66622647-66622666 | MS.gene81678:CDS | 30.0% | |
| CATGCTAAATATTTCAGTTG+AGG | + | chr5.1:66623670-66623689 | MS.gene81678:intron | 30.0% | |
| CTTAATATCCTTGTTAGCAT+TGG | - | chr5.1:66625747-66625766 | None:intergenic | 30.0% | |
| CTTGCAATAACTATGTCATT+AGG | - | chr5.1:66625611-66625630 | None:intergenic | 30.0% | |
| GGACGAAGTATAATATATGA+CGG | + | chr5.1:66624294-66624313 | MS.gene81678:intron | 30.0% | |
| GTAGCAATGTTTCAAAAATG+AGG | + | chr5.1:66624394-66624413 | MS.gene81678:CDS | 30.0% | |
| TCAGTTAAATCATACTTGTG+TGG | + | chr5.1:66622673-66622692 | MS.gene81678:CDS | 30.0% | |
| TGTCAATCAATCATAACCAT+TGG | - | chr5.1:66623180-66623199 | None:intergenic | 30.0% | |
| ! | GAAGTATAATATATGACGGA+GGG | + | chr5.1:66624298-66624317 | MS.gene81678:intron | 30.0% |
| ! | TATTGTGTTAGTGTCTTGTT+CGG | + | chr5.1:66625281-66625300 | MS.gene81678:intron | 30.0% |
| ! | TGAGGAAACAATTTTCAACT+TGG | - | chr5.1:66625083-66625102 | None:intergenic | 30.0% |
| !! | GAAGATTTGTTGAGTGATAA+AGG | + | chr5.1:66622778-66622797 | MS.gene81678:CDS | 30.0% |
| !! | TCACTCATTGTAAGTTTTGA+GGG | - | chr5.1:66625825-66625844 | None:intergenic | 30.0% |
| !!! | CTTGAATTTTAAAACACTGC+TGG | - | chr5.1:66624165-66624184 | None:intergenic | 30.0% |
| !!! | GTAAAATGTTTTAAGGTGCA+TGG | - | chr5.1:66623078-66623097 | None:intergenic | 30.0% |
| AACAAAATATGAGCTGGAGT+TGG | + | chr5.1:66624704-66624723 | MS.gene81678:CDS | 35.0% | |
| AAGATTATAACTGTGACGTC+AGG | + | chr5.1:66623246-66623265 | MS.gene81678:intron | 35.0% | |
| AAGCAAGATATAAGCAAGAC+AGG | + | chr5.1:66625776-66625795 | MS.gene81678:CDS | 35.0% | |
| AAGTCCAGACAGAAAATCTA+TGG | + | chr5.1:66623755-66623774 | MS.gene81678:CDS | 35.0% | |
| AATTCAAATTCCCTCGAGAA+CGG | + | chr5.1:66624606-66624625 | MS.gene81678:intron | 35.0% | |
| ACAAGATTCTTAGATGCTTC+TGG | + | chr5.1:66624835-66624854 | MS.gene81678:CDS | 35.0% | |
| ACATGGAACAAAATATGAGC+TGG | + | chr5.1:66624698-66624717 | MS.gene81678:CDS | 35.0% | |
| ACATTGTTGACAACTTGACA+TGG | - | chr5.1:66623319-66623338 | None:intergenic | 35.0% | |
| ACCTCATTCCAAGAAAAAGT+TGG | + | chr5.1:66622980-66622999 | MS.gene81678:intron | 35.0% | |
| AGATTATAACTGTGACGTCA+GGG | + | chr5.1:66623247-66623266 | MS.gene81678:intron | 35.0% | |
| CGAAGTATAATATATGACGG+AGG | + | chr5.1:66624297-66624316 | MS.gene81678:intron | 35.0% | |
| GACATAGTAAATTCAAGGGA+TGG | + | chr5.1:66624583-66624602 | MS.gene81678:intron | 35.0% | |
| GAGATCATAAGCTCAGAAAA+TGG | + | chr5.1:66623705-66623724 | MS.gene81678:CDS | 35.0% | |
| GCATCACAAGCAAACTTTAA+AGG | - | chr5.1:66623026-66623045 | None:intergenic | 35.0% | |
| GTCTTGCTTATATCTTGCTT+TGG | - | chr5.1:66625776-66625795 | None:intergenic | 35.0% | |
| TATTGATGTGACCACAATTG+TGG | + | chr5.1:66625385-66625404 | MS.gene81678:intron | 35.0% | |
| TGACATATACTAGCAAGAGA+AGG | - | chr5.1:66625661-66625680 | None:intergenic | 35.0% | |
| TTACAGGTAAGCATGAAAGA+TGG | + | chr5.1:66625716-66625735 | MS.gene81678:intron | 35.0% | |
| ! | AATATAAGAGCACATGGACT+TGG | - | chr5.1:66625638-66625657 | None:intergenic | 35.0% |
| ! | AGAAGGAATATAAGAGCACA+TGG | - | chr5.1:66625644-66625663 | None:intergenic | 35.0% |
| ! | TATTTTACAACCGTTCTCGA+GGG | - | chr5.1:66624619-66624638 | None:intergenic | 35.0% |
| ! | TTCAAGTGTGATGATGATGT+TGG | + | chr5.1:66624179-66624198 | MS.gene81678:intron | 35.0% |
| ! | TTTACAACAGTTTTCAGCAC+AGG | + | chr5.1:66623847-66623866 | MS.gene81678:CDS | 35.0% |
| !! | ACCAACTTTTTCTTGGAATG+AGG | - | chr5.1:66622984-66623003 | None:intergenic | 35.0% |
| !! | CTCGACTGTTGATTTGAAAT+CGG | + | chr5.1:66625568-66625587 | MS.gene81678:intron | 35.0% |
| AAATCTTGATGTCATGGACC+TGG | + | chr5.1:66625436-66625455 | MS.gene81678:intron | 40.0% | |
| AAGCTGAATCTTCTTCTGCA+AGG | - | chr5.1:66622717-66622736 | None:intergenic | 40.0% | |
| AATGAGGATGCAAGACAGAA+TGG | + | chr5.1:66624410-66624429 | MS.gene81678:CDS | 40.0% | |
| ACGTCAGTTGAAGTACAAAC+AGG | + | chr5.1:66623780-66623799 | MS.gene81678:CDS | 40.0% | |
| AGATTCTTAGATGCTTCTGG+TGG | + | chr5.1:66624838-66624857 | MS.gene81678:CDS | 40.0% | |
| CGTCAGTTGAAGTACAAACA+GGG | + | chr5.1:66623781-66623800 | MS.gene81678:CDS | 40.0% | |
| GGTGAAGAAAAAGAGAGTTG+TGG | + | chr5.1:66624859-66624878 | MS.gene81678:CDS | 40.0% | |
| TATGGAGATCAATGTGTGTG+TGG | + | chr5.1:66623391-66623410 | MS.gene81678:intron | 40.0% | |
| TCACGAAATAACCACAATCG+TGG | - | chr5.1:66625358-66625377 | None:intergenic | 40.0% | |
| TTTCATACTGCTTCATCGCA+TGG | - | chr5.1:66624780-66624799 | None:intergenic | 40.0% | |
| ! | AGTTTGCTTGTGATGCCAAA+AGG | + | chr5.1:66623030-66623049 | MS.gene81678:intron | 40.0% |
| ! | GTAGCCATAGATTTTCTGTC+TGG | - | chr5.1:66623762-66623781 | None:intergenic | 40.0% |
| ! | GTATTTTACAACCGTTCTCG+AGG | - | chr5.1:66624620-66624639 | None:intergenic | 40.0% |
| !! | AGTCTCTAAAACGGTTCATG+AGG | + | chr5.1:66624537-66624556 | MS.gene81678:intron | 40.0% |
| AAGCTAGGAGAACTGTGTCT+AGG | + | chr5.1:66624980-66624999 | MS.gene81678:CDS | 45.0% | |
| AAGGTTGTAGACCACGATTG+TGG | + | chr5.1:66625344-66625363 | MS.gene81678:intron | 45.0% | |
| ACAGAATGGAAGCAGCAACA+AGG | + | chr5.1:66624424-66624443 | MS.gene81678:CDS | 45.0% | |
| CCACAACATGACCACAATTG+TGG | - | chr5.1:66625399-66625418 | None:intergenic | 45.0% | |
| CCACAATTGTGGTCATGTTG+TGG | + | chr5.1:66625396-66625415 | MS.gene81678:intron | 45.0% | |
| GGCTTATGCTTTCTCACAAC+AGG | + | chr5.1:66624461-66624480 | MS.gene81678:CDS | 45.0% | |
| GTTCCAATTGCAAGCAATCC+AGG | - | chr5.1:66625457-66625476 | None:intergenic | 45.0% | |
| TATTCGCAGCTGCAACAATG+AGG | - | chr5.1:66624647-66624666 | None:intergenic | 45.0% | |
| TGGCTCAACCAATGCTAACA+AGG | + | chr5.1:66625736-66625755 | MS.gene81678:CDS | 45.0% | |
| ! | AACAAGGAGAGAAAGAGCAC+TGG | + | chr5.1:66624440-66624459 | MS.gene81678:CDS | 45.0% |
| !! | AATTATTATAAAATAAAACT+TGG | + | chr5.1:66623954-66623973 | MS.gene81678:intron | 5.0% |
| CTAGGAGAACTGTGTCTAGG+AGG | + | chr5.1:66624983-66625002 | MS.gene81678:CDS | 50.0% | |
| GGACCTGGATTGCTTGCAAT+TGG | + | chr5.1:66625451-66625470 | MS.gene81678:intron | 50.0% | |
| TCGAAAGGTGGATGGCAACT+CGG | + | chr5.1:66624728-66624747 | MS.gene81678:CDS | 50.0% | |
| CACACGTAGTCACACTCACG+TGG | - | chr5.1:66625215-66625234 | None:intergenic | 55.0% | |
| ! | GACGGAGGGAGTGTGACATA+AGG | + | chr5.1:66624312-66624331 | MS.gene81678:intron | 55.0% |
| !! | GAGTTGGCTCGAAAGGTGGA+TGG | + | chr5.1:66624720-66624739 | MS.gene81678:CDS | 55.0% |
| !! | TGAGCTGGAGTTGGCTCGAA+AGG | + | chr5.1:66624713-66624732 | MS.gene81678:CDS | 55.0% |
| !! | GCTGGAGTTGGCTCGAAAGG+TGG | + | chr5.1:66624716-66624735 | MS.gene81678:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66622637 | 66625844 | 66622637 | ID=MS.gene81678 |
| chr5.1 | mRNA | 66622637 | 66625844 | 66622637 | ID=MS.gene81678.t1;Parent=MS.gene81678 |
| chr5.1 | exon | 66622637 | 66622921 | 66622637 | ID=MS.gene81678.t1.exon1;Parent=MS.gene81678.t1 |
| chr5.1 | CDS | 66622637 | 66622921 | 66622637 | ID=cds.MS.gene81678.t1;Parent=MS.gene81678.t1 |
| chr5.1 | exon | 66623687 | 66623896 | 66623687 | ID=MS.gene81678.t1.exon2;Parent=MS.gene81678.t1 |
| chr5.1 | CDS | 66623687 | 66623896 | 66623687 | ID=cds.MS.gene81678.t1;Parent=MS.gene81678.t1 |
| chr5.1 | exon | 66624369 | 66624482 | 66624369 | ID=MS.gene81678.t1.exon3;Parent=MS.gene81678.t1 |
| chr5.1 | CDS | 66624369 | 66624482 | 66624369 | ID=cds.MS.gene81678.t1;Parent=MS.gene81678.t1 |
| chr5.1 | exon | 66624658 | 66625047 | 66624658 | ID=MS.gene81678.t1.exon4;Parent=MS.gene81678.t1 |
| chr5.1 | CDS | 66624658 | 66625047 | 66624658 | ID=cds.MS.gene81678.t1;Parent=MS.gene81678.t1 |
| chr5.1 | exon | 66625722 | 66625844 | 66625722 | ID=MS.gene81678.t1.exon5;Parent=MS.gene81678.t1 |
| chr5.1 | CDS | 66625722 | 66625844 | 66625722 | ID=cds.MS.gene81678.t1;Parent=MS.gene81678.t1 |
| Gene Sequence |
| Protein sequence |
