Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86382.t1 | XP_003597881.1 | 94.4 | 179 | 7 | 2 | 1 | 177 | 1 | 178 | 2.40E-86 | 328.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86382.t1 | Q9SSR1 | 70.7 | 174 | 48 | 3 | 5 | 177 | 1 | 172 | 1.6e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86382.t1 | Q2HUB7 | 94.4 | 179 | 7 | 2 | 1 | 177 | 1 | 178 | 1.7e-86 | 328.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene86382 | 0.809126 | 2.21E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene86382 | 0.811675 | 6.22E-51 | -1.69E-46 |
| MS.gene04933 | MS.gene86382 | 0.816235 | 6.14E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene86382 | 0.815947 | 7.12E-52 | -1.69E-46 |
| MS.gene049426 | MS.gene86382 | 0.806566 | 7.73E-50 | -1.69E-46 |
| MS.gene049910 | MS.gene86382 | 0.825882 | 3.68E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene86382 | 0.830187 | 3.38E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene86382 | 0.82549 | 4.56E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene86382 | 0.83779 | 4.22E-57 | -1.69E-46 |
| MS.gene050330 | MS.gene86382 | -0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene86382 | 0.811092 | 8.32E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene86382 | 0.807343 | 5.30E-50 | -1.69E-46 |
| MS.gene050650 | MS.gene86382 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene86382 | 0.825945 | 3.55E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene86382 | 0.823181 | 1.59E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene86382 | 0.832562 | 8.81E-56 | -1.69E-46 |
| MS.gene051568 | MS.gene86382 | 0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene051582 | MS.gene86382 | 0.814613 | 1.41E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene86382 | 0.809143 | 2.19E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene86382 | 0.851689 | 7.54E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene86382 | -0.839415 | 1.61E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene86382 | 0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene86382 | 0.821075 | 4.90E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene86382 | 0.800187 | 1.62E-48 | -1.69E-46 |
| MS.gene052389 | MS.gene86382 | 0.802268 | 6.08E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene86382 | 0.810924 | 9.05E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene86382 | 0.826834 | 2.18E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene86382 | 0.805239 | 1.47E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene86382 | 0.840399 | 8.90E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene86382 | 0.829782 | 4.25E-55 | -1.69E-46 |
| MS.gene054930 | MS.gene86382 | 0.850218 | 1.96E-60 | -1.69E-46 |
| MS.gene055356 | MS.gene86382 | 0.809351 | 1.98E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene86382 | 0.815552 | 8.72E-52 | -1.69E-46 |
| MS.gene055367 | MS.gene86382 | 0.82755 | 1.47E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene86382 | 0.855567 | 5.78E-62 | -1.69E-46 |
| MS.gene055701 | MS.gene86382 | 0.835204 | 1.92E-56 | -1.69E-46 |
| MS.gene05595 | MS.gene86382 | 0.809152 | 2.18E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene86382 | 0.848694 | 5.21E-60 | -1.69E-46 |
| MS.gene056979 | MS.gene86382 | 0.851899 | 6.57E-61 | -1.69E-46 |
| MS.gene057121 | MS.gene86382 | 0.810593 | 1.07E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene86382 | 0.842045 | 3.29E-58 | -1.69E-46 |
| MS.gene057476 | MS.gene86382 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene86382 | 0.80254 | 5.34E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene86382 | 0.842273 | 2.86E-58 | -1.69E-46 |
| MS.gene058220 | MS.gene86382 | 0.817669 | 2.92E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene86382 | 0.843589 | 1.28E-58 | -1.69E-46 |
| MS.gene058949 | MS.gene86382 | 0.805802 | 1.12E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene86382 | 0.836592 | 8.55E-57 | -1.69E-46 |
| MS.gene059247 | MS.gene86382 | 0.839016 | 2.04E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene86382 | 0.825137 | 5.52E-54 | -1.69E-46 |
| MS.gene059462 | MS.gene86382 | 0.806393 | 8.41E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene86382 | 0.808152 | 3.56E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene86382 | 0.80029 | 1.54E-48 | -1.69E-46 |
| MS.gene061114 | MS.gene86382 | -0.84833 | 6.57E-60 | -1.69E-46 |
| MS.gene061159 | MS.gene86382 | 0.827904 | 1.21E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86382.t1 | MTR_2g103590 | 96.364 | 165 | 6 | 0 | 13 | 177 | 14 | 178 | 4.55e-117 | 329 |
| MS.gene86382.t1 | MTR_5g035310 | 32.075 | 159 | 103 | 4 | 19 | 175 | 41 | 196 | 2.61e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86382.t1 | AT1G52590 | 70.690 | 174 | 48 | 3 | 5 | 177 | 1 | 172 | 3.46e-85 | 248 |
| MS.gene86382.t1 | AT1G24095 | 37.815 | 119 | 69 | 3 | 60 | 175 | 9 | 125 | 1.64e-21 | 85.9 |
| MS.gene86382.t1 | AT1G24095 | 37.815 | 119 | 69 | 3 | 60 | 175 | 75 | 191 | 2.53e-21 | 87.0 |
Find 28 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTCCTGCTTGTAATAT+TGG | 0.197241 | 2.3:-1443140 | MS.gene86382:CDS |
| TTGTACTTGTTGAAAATAAT+AGG | 0.312862 | 2.3:-1441040 | MS.gene86382:intron |
| AGCTTCCTGCTTGTAATATT+GGG | 0.322079 | 2.3:-1443139 | MS.gene86382:CDS |
| CGACCCATCATGTTATTTGA+TGG | 0.340065 | 2.3:-1442990 | MS.gene86382:intron |
| CTCGAAGTGATAACGTGAAC+TGG | 0.384250 | 2.3:-1443049 | MS.gene86382:CDS |
| AGAGGCTGTGTTGAAGATAA+TGG | 0.394830 | 2.3:-1440523 | MS.gene86382:CDS |
| CTGAAGAAGAAATGCTAGCT+GGG | 0.454347 | 2.3:+1440479 | None:intergenic |
| TTTACCATCAAATAACATGA+TGG | 0.459751 | 2.3:+1442986 | None:intergenic |
| TCGATGACTGCAGATTTGTC+AGG | 0.465548 | 2.3:-1440363 | MS.gene86382:intron |
| ACTGAAGAAGAAATGCTAGC+TGG | 0.468557 | 2.3:+1440478 | None:intergenic |
| CAGTTCACGTTATCACTTCG+AGG | 0.470003 | 2.3:+1443050 | None:intergenic |
| AAGATGTTACTCAGGAGATC+AGG | 0.488992 | 2.3:-1441089 | MS.gene86382:CDS |
| ACATGATGGGTCGTTTGTCT+TGG | 0.498630 | 2.3:+1443000 | None:intergenic |
| GAAGCTCTTCAGAGTGAAGC+TGG | 0.523439 | 2.3:-1441113 | MS.gene86382:CDS |
| AAGAAATGCTAGCTGGGGAA+AGG | 0.536026 | 2.3:+1440485 | None:intergenic |
| AGAAATGCTAGCTGGGGAAA+GGG | 0.545491 | 2.3:+1440486 | None:intergenic |
| TGACAGAGTAGCGAAGGTTG+TGG | 0.554535 | 2.3:+1443076 | None:intergenic |
| TTACCATCAAATAACATGAT+GGG | 0.558391 | 2.3:+1442987 | None:intergenic |
| CGATGACTGCAGATTTGTCA+GGG | 0.572274 | 2.3:-1440362 | MS.gene86382:intron |
| ACGCGCCCAATATTACAAGC+AGG | 0.579281 | 2.3:+1443134 | None:intergenic |
| GTGTGTAACTTGTGTAATGG+TGG | 0.594795 | 2.3:-1442869 | MS.gene86382:CDS |
| AAGCTGGCAAGATGTTACTC+AGG | 0.601546 | 2.3:-1441097 | MS.gene86382:CDS |
| AGGTTGTGACAGAGTAGCGA+AGG | 0.608840 | 2.3:+1443070 | None:intergenic |
| TGAAGAAGAAATGCTAGCTG+GGG | 0.610484 | 2.3:+1440480 | None:intergenic |
| GGGGTGTGTAACTTGTGTAA+TGG | 0.614565 | 2.3:-1442872 | MS.gene86382:CDS |
| TGTTGCAAATAATCGTTACA+CGG | 0.624647 | 2.3:-1440323 | MS.gene86382:CDS |
| TAGATCATACATAAAGTCAG+AGG | 0.631939 | 2.3:-1440541 | MS.gene86382:CDS |
| TCGAAGTGATAACGTGAACT+GGG | 0.641991 | 2.3:-1443048 | MS.gene86382:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACAACATTATAAAAA+TGG | + | chr2.3:1443035-1443054 | None:intergenic | 10.0% |
| !! | TATAAAAATCTAATAAACAT+TGG | + | chr2.3:1440842-1440861 | None:intergenic | 10.0% |
| !!! | GTTATTTTTCAAATTATTAA+CGG | + | chr2.3:1442014-1442033 | None:intergenic | 10.0% |
| !! | AAATTCAACAACAAATTATT+TGG | + | chr2.3:1442248-1442267 | None:intergenic | 15.0% |
| !! | TTATGCTTCATATTAAAAAT+TGG | - | chr2.3:1440688-1440707 | MS.gene86382:intron | 15.0% |
| !!! | TGTTTTATTCATATTTTGTT+GGG | - | chr2.3:1442290-1442309 | MS.gene86382:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATCAT+CGG | - | chr2.3:1441544-1441563 | MS.gene86382:intron | 15.0% |
| !! | ATTGAAAATACAAAGAAGAA+GGG | + | chr2.3:1440505-1440524 | None:intergenic | 20.0% |
| !! | TAATAACCTATGAAAACAAT+CGG | - | chr2.3:1442763-1442782 | MS.gene86382:intron | 20.0% |
| !! | TAATATGAAGCATAATCAAA+AGG | + | chr2.3:1440683-1440702 | None:intergenic | 20.0% |
| !!! | AGGAAATGTAAATTTTATCT+TGG | - | chr2.3:1442870-1442889 | MS.gene86382:CDS | 20.0% |
| !!! | ATTTGATTAGTTTACTTAGT+TGG | - | chr2.3:1440775-1440794 | MS.gene86382:intron | 20.0% |
| !!! | CTGTTTTATTCATATTTTGT+TGG | - | chr2.3:1442289-1442308 | MS.gene86382:intron | 20.0% |
| !!! | CTTTATTTTATCTTTGGTTA+TGG | - | chr2.3:1442787-1442806 | MS.gene86382:intron | 20.0% |
| !!! | TTGTACTTGTTGAAAATAAT+AGG | - | chr2.3:1442412-1442431 | MS.gene86382:intron | 20.0% |
| ! | AAATATATGGGTAACTATGT+AGG | - | chr2.3:1441679-1441698 | MS.gene86382:intron | 25.0% |
| ! | AAATCTAATAAACATTGGAC+AGG | + | chr2.3:1440837-1440856 | None:intergenic | 25.0% |
| ! | AGATTTGATCTTTAATTACG+TGG | - | chr2.3:1441160-1441179 | MS.gene86382:intron | 25.0% |
| ! | CATTGAAAATACAAAGAAGA+AGG | + | chr2.3:1440506-1440525 | None:intergenic | 25.0% |
| ! | CCTATAAAATATACTTACAG+AGG | + | chr2.3:1443005-1443024 | None:intergenic | 25.0% |
| ! | GTTACTAATCTGAAAATTTC+TGG | + | chr2.3:1442487-1442506 | None:intergenic | 25.0% |
| ! | TGAAAGAAAATCAAGGTTAA+TGG | + | chr2.3:1442186-1442205 | None:intergenic | 25.0% |
| ! | TTACCATCAAATAACATGAT+GGG | + | chr2.3:1440468-1440487 | None:intergenic | 25.0% |
| ! | TTTACCATCAAATAACATGA+TGG | + | chr2.3:1440469-1440488 | None:intergenic | 25.0% |
| ! | TTTATTGCTAAAGAGAAACA+AGG | - | chr2.3:1443050-1443069 | MS.gene86382:CDS | 25.0% |
| ! | TTTATTTAAACTCGATATCC+CGG | - | chr2.3:1440922-1440941 | MS.gene86382:intron | 25.0% |
| !! | CCTCTGTAAGTATATTTTAT+AGG | - | chr2.3:1443002-1443021 | MS.gene86382:CDS | 25.0% |
| !! | TATTCATATTTTGTTGGGAT+GGG | - | chr2.3:1442295-1442314 | MS.gene86382:intron | 25.0% |
| !! | TTATTCATATTTTGTTGGGA+TGG | - | chr2.3:1442294-1442313 | MS.gene86382:intron | 25.0% |
| !!! | ATCGGACTTTATTTTATCTT+TGG | - | chr2.3:1442781-1442800 | MS.gene86382:intron | 25.0% |
| !!! | ATTGAAATTTTAACAGAACG+AGG | + | chr2.3:1442574-1442593 | None:intergenic | 25.0% |
| !!! | TACTTAGTTGGTTTGTTTTA+TGG | - | chr2.3:1440787-1440806 | MS.gene86382:intron | 25.0% |
| !!! | TGTAAATTTTATCTTGGTGT+TGG | - | chr2.3:1442876-1442895 | MS.gene86382:intron | 25.0% |
| !!! | TTTGATGATTTTGACATACA+GGG | - | chr2.3:1440560-1440579 | MS.gene86382:intron | 25.0% |
| !!! | TTTTGATGATTTTGACATAC+AGG | - | chr2.3:1440559-1440578 | MS.gene86382:intron | 25.0% |
| AACGATGTGAAAGAAAATCA+AGG | + | chr2.3:1442193-1442212 | None:intergenic | 30.0% | |
| AATCAGCTGAAAACAACTTA+TGG | + | chr2.3:1442728-1442747 | None:intergenic | 30.0% | |
| ACATTAAGAGGAATCAAACT+CGG | - | chr2.3:1441045-1441064 | MS.gene86382:CDS | 30.0% | |
| CCAACTCAATGCAAATATAT+GGG | - | chr2.3:1441667-1441686 | MS.gene86382:intron | 30.0% | |
| CCAAGTCAATGCAAATATAT+GGG | - | chr2.3:1441897-1441916 | MS.gene86382:intron | 30.0% | |
| CCTCTTAATGTCAATTTGAT+GGG | + | chr2.3:1441036-1441055 | None:intergenic | 30.0% | |
| GTTAATGGCATTCAAAAACT+TGG | + | chr2.3:1442171-1442190 | None:intergenic | 30.0% | |
| TAGATCATACATAAAGTCAG+AGG | - | chr2.3:1442911-1442930 | MS.gene86382:intron | 30.0% | |
| TAGATGATTGACACAATTCA+TGG | - | chr2.3:1441644-1441663 | MS.gene86382:intron | 30.0% | |
| TCCTCTTAATGTCAATTTGA+TGG | + | chr2.3:1441037-1441056 | None:intergenic | 30.0% | |
| TCTTTAATTACGTGGAATTG+AGG | - | chr2.3:1441168-1441187 | MS.gene86382:intron | 30.0% | |
| TGTTGCAAATAATCGTTACA+CGG | - | chr2.3:1443129-1443148 | MS.gene86382:CDS | 30.0% | |
| TTAGTTGAAACAATCCAAGT+TGG | + | chr2.3:1441509-1441528 | None:intergenic | 30.0% | |
| ! | AAAACCGGTTTATAAAGTCA+GGG | - | chr2.3:1440886-1440905 | MS.gene86382:intron | 30.0% |
| ! | AATAATCGTTACACGGTTTT+TGG | - | chr2.3:1443136-1443155 | MS.gene86382:CDS | 30.0% |
| ! | ATGGATTACTCTCTTATAAC+AGG | - | chr2.3:1442609-1442628 | MS.gene86382:intron | 30.0% |
| ! | TAAAGTCCGATTGTTTTCAT+AGG | + | chr2.3:1442772-1442791 | None:intergenic | 30.0% |
| !! | CTTGAGAAGAGTTTTTAAAG+AGG | - | chr2.3:1441409-1441428 | MS.gene86382:intron | 30.0% |
| !! | TTGATGATTTTGACATACAG+GGG | - | chr2.3:1440561-1440580 | MS.gene86382:intron | 30.0% |
| !!! | AAATTTTATCTTGGTGTTGG+TGG | - | chr2.3:1442879-1442898 | MS.gene86382:intron | 30.0% |
| !!! | TAGTTGAAAGTGTTTTTCAC+AGG | + | chr2.3:1441738-1441757 | None:intergenic | 30.0% |
| AACAGAACGAGGATTCTAAT+TGG | + | chr2.3:1442563-1442582 | None:intergenic | 35.0% | |
| AGCTTCCTGCTTGTAATATT+GGG | - | chr2.3:1440313-1440332 | MS.gene86382:CDS | 35.0% | |
| ATTAGTAACCTCTTTCTCCA+GGG | - | chr2.3:1442498-1442517 | MS.gene86382:intron | 35.0% | |
| ATTTCCTCTTTACGCACAAA+AGG | + | chr2.3:1442857-1442876 | None:intergenic | 35.0% | |
| CAAACTCTGATTAATCTGAG+GGG | - | chr2.3:1440946-1440965 | MS.gene86382:intron | 35.0% | |
| CAATTATCTTCTCAGCTCAA+TGG | - | chr2.3:1442590-1442609 | MS.gene86382:intron | 35.0% | |
| CATTAAGAGGAATCAAACTC+GGG | - | chr2.3:1441046-1441065 | MS.gene86382:CDS | 35.0% | |
| CCAAACTCTGATTAATCTGA+GGG | - | chr2.3:1440945-1440964 | MS.gene86382:intron | 35.0% | |
| CCAACTCATCTTTACAAAAC+CGG | - | chr2.3:1440871-1440890 | MS.gene86382:intron | 35.0% | |
| CCCATATATTTGCATTGAGT+TGG | + | chr2.3:1441670-1441689 | None:intergenic | 35.0% | |
| CCCATCAAATTGACATTAAG+AGG | - | chr2.3:1441033-1441052 | MS.gene86382:intron | 35.0% | |
| GCCAACTCAATGCAAATATA+TGG | - | chr2.3:1441666-1441685 | MS.gene86382:intron | 35.0% | |
| GCCAAGTCAATGCAAATATA+TGG | - | chr2.3:1441896-1441915 | MS.gene86382:intron | 35.0% | |
| GGTTAATGCAATTCAGTTGA+TGG | + | chr2.3:1442227-1442246 | None:intergenic | 35.0% | |
| GGTTAATTGTGTTCAGAGAA+TGG | + | chr2.3:1442150-1442169 | None:intergenic | 35.0% | |
| GTAACTCATCCTTACAAAAC+CGG | + | chr2.3:1441456-1441475 | None:intergenic | 35.0% | |
| GTTCATTATGTTCTATGCTC+TGG | + | chr2.3:1441009-1441028 | None:intergenic | 35.0% | |
| TAAGTACTTGTACGACTGTT+TGG | - | chr2.3:1442672-1442691 | MS.gene86382:intron | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | + | chr2.3:1441254-1441273 | None:intergenic | 35.0% | |
| ! | CAAAACCGGTTTATAAAGTC+AGG | - | chr2.3:1440885-1440904 | MS.gene86382:intron | 35.0% |
| !! | AATCCAAGTTGGTTAAGAGT+CGG | + | chr2.3:1441498-1441517 | None:intergenic | 35.0% |
| !! | CCCATATATTTGCATTGACT+TGG | + | chr2.3:1441900-1441919 | None:intergenic | 35.0% |
| !! | CGGTTTTGTAAAGATGAGTT+GGG | + | chr2.3:1440873-1440892 | None:intergenic | 35.0% |
| !! | GAGAAGAGTTTTTAAAGAGG+AGG | - | chr2.3:1441412-1441431 | MS.gene86382:intron | 35.0% |
| !! | TCTATGCTCTGGCTTTAAAT+GGG | + | chr2.3:1440998-1441017 | None:intergenic | 35.0% |
| !! | TTAGAAGTGTTAGTGCTACA+AGG | - | chr2.3:1442110-1442129 | MS.gene86382:intron | 35.0% |
| !! | TTCTATGCTCTGGCTTTAAA+TGG | + | chr2.3:1440999-1441018 | None:intergenic | 35.0% |
| !! | TTTTGTAAAGATGAGTTGGG+TGG | + | chr2.3:1440870-1440889 | None:intergenic | 35.0% |
| AAGATGTTACTCAGGAGATC+AGG | - | chr2.3:1442363-1442382 | MS.gene86382:intron | 40.0% | |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr2.3:1441250-1441269 | None:intergenic | 40.0% | |
| ACTGAAGAAGAAATGCTAGC+TGG | + | chr2.3:1442977-1442996 | None:intergenic | 40.0% | |
| AGAATCCTATCTATCCGATG+TGG | + | chr2.3:1441391-1441410 | None:intergenic | 40.0% | |
| AGAGGCTGTGTTGAAGATAA+TGG | - | chr2.3:1442929-1442948 | MS.gene86382:intron | 40.0% | |
| AGAGTCCAACACTTACACAT+GGG | + | chr2.3:1442052-1442071 | None:intergenic | 40.0% | |
| AGATTAATCAGAGTTTGGCC+GGG | + | chr2.3:1440943-1440962 | None:intergenic | 40.0% | |
| AGCAACGAAACTTCTGATGA+TGG | - | chr2.3:1440811-1440830 | MS.gene86382:intron | 40.0% | |
| CAGATTAATCAGAGTTTGGC+CGG | + | chr2.3:1440944-1440963 | None:intergenic | 40.0% | |
| CAGCTTCCTGCTTGTAATAT+TGG | - | chr2.3:1440312-1440331 | MS.gene86382:CDS | 40.0% | |
| CCATCTTAGAAATCGTGGTT+GGG | + | chr2.3:1441249-1441268 | None:intergenic | 40.0% | |
| CCCTCAGATTAATCAGAGTT+TGG | + | chr2.3:1440948-1440967 | None:intergenic | 40.0% | |
| CTGAAGAAGAAATGCTAGCT+GGG | + | chr2.3:1442976-1442995 | None:intergenic | 40.0% | |
| GACACCCTGACTTTATAAAC+CGG | + | chr2.3:1440893-1440912 | None:intergenic | 40.0% | |
| GATTAGTAACCTCTTTCTCC+AGG | - | chr2.3:1442497-1442516 | MS.gene86382:intron | 40.0% | |
| GCCAAACTCTGATTAATCTG+AGG | - | chr2.3:1440944-1440963 | MS.gene86382:intron | 40.0% | |
| GTAATCCCATGTGTAAGTGT+TGG | - | chr2.3:1442044-1442063 | MS.gene86382:intron | 40.0% | |
| TAGTTCCACATCGGATAGAT+AGG | - | chr2.3:1441383-1441402 | MS.gene86382:intron | 40.0% | |
| TGAAGAAGAAATGCTAGCTG+GGG | + | chr2.3:1442975-1442994 | None:intergenic | 40.0% | |
| TGGGTAACTATGTAGGTAGA+TGG | - | chr2.3:1441686-1441705 | MS.gene86382:intron | 40.0% | |
| TGTTGGACTCTGACATGTAT+CGG | - | chr2.3:1442061-1442080 | MS.gene86382:intron | 40.0% | |
| ! | AAACCGACTCTTAACCAACT+TGG | - | chr2.3:1441492-1441511 | MS.gene86382:intron | 40.0% |
| ! | CGACCCATCATGTTATTTGA+TGG | - | chr2.3:1440462-1440481 | MS.gene86382:intron | 40.0% |
| ! | CGGTTTTTACCGTTAAGAGT+CGG | + | chr2.3:1441478-1441497 | None:intergenic | 40.0% |
| ! | CTTACCTTTTGTGCGTAAAG+AGG | - | chr2.3:1442850-1442869 | MS.gene86382:CDS | 40.0% |
| ! | GTGTGTAACTTGTGTAATGG+TGG | - | chr2.3:1440583-1440602 | MS.gene86382:intron | 40.0% |
| ! | TCGAAGTGATAACGTGAACT+GGG | - | chr2.3:1440404-1440423 | MS.gene86382:intron | 40.0% |
| ! | TCTAAGATGGTATCAGAGCT+TGG | - | chr2.3:1441259-1441278 | MS.gene86382:intron | 40.0% |
| ! | TCTGTGTCAGTGTTTTTCAC+AGG | + | chr2.3:1441968-1441987 | None:intergenic | 40.0% |
| !! | CCGGTTTTGTAAAGATGAGT+TGG | + | chr2.3:1440874-1440893 | None:intergenic | 40.0% |
| !! | GATGAGTTACCGACTCTTAA+CGG | - | chr2.3:1441466-1441485 | MS.gene86382:intron | 40.0% |
| AACCTTAATCTCCTAGTCCC+TGG | + | chr2.3:1442518-1442537 | None:intergenic | 45.0% | |
| AACTAAATCCCACCGAGTGT+TGG | + | chr2.3:1441368-1441387 | None:intergenic | 45.0% | |
| AAGAAATGCTAGCTGGGGAA+AGG | + | chr2.3:1442970-1442989 | None:intergenic | 45.0% | |
| AAGCTGGCAAGATGTTACTC+AGG | - | chr2.3:1442355-1442374 | MS.gene86382:intron | 45.0% | |
| ACTACGAGACCAACCCAAAT+GGG | - | chr2.3:1441106-1441125 | MS.gene86382:CDS | 45.0% | |
| ACTGACACAGACACGAATAC+CGG | - | chr2.3:1441977-1441996 | MS.gene86382:intron | 45.0% | |
| AGAAATGCTAGCTGGGGAAA+GGG | + | chr2.3:1442969-1442988 | None:intergenic | 45.0% | |
| AGATGGTATCAGAGCTTGGT+TGG | - | chr2.3:1441263-1441282 | MS.gene86382:intron | 45.0% | |
| AGTGACACGCTTAACCCATT+TGG | + | chr2.3:1441123-1441142 | None:intergenic | 45.0% | |
| ATTCCAATAGAAGCCGTGTC+CGG | + | chr2.3:1442090-1442109 | None:intergenic | 45.0% | |
| CAGAGTCCAACACTTACACA+TGG | + | chr2.3:1442053-1442072 | None:intergenic | 45.0% | |
| CAGTTCACGTTATCACTTCG+AGG | + | chr2.3:1440405-1440424 | None:intergenic | 45.0% | |
| CCACCAAACCAGATAGTGTT+GGG | + | chr2.3:1441216-1441235 | None:intergenic | 45.0% | |
| CGATGACTGCAGATTTGTCA+GGG | - | chr2.3:1443090-1443109 | MS.gene86382:CDS | 45.0% | |
| GATGGTATCAGAGCTTGGTT+GGG | - | chr2.3:1441264-1441283 | MS.gene86382:intron | 45.0% | |
| GTGACACGCTTAACCCATTT+GGG | + | chr2.3:1441122-1441141 | None:intergenic | 45.0% | |
| TCGATGACTGCAGATTTGTC+AGG | - | chr2.3:1443089-1443108 | MS.gene86382:CDS | 45.0% | |
| ! | CCCAACCACGATTTCTAAGA+TGG | - | chr2.3:1441246-1441265 | MS.gene86382:intron | 45.0% |
| ! | CTCGAAGTGATAACGTGAAC+TGG | - | chr2.3:1440403-1440422 | MS.gene86382:intron | 45.0% |
| ! | GGGGTGTGTAACTTGTGTAA+TGG | - | chr2.3:1440580-1440599 | MS.gene86382:intron | 45.0% |
| ! | GGTGGGATTTAGTTCCACAT+CGG | - | chr2.3:1441374-1441393 | MS.gene86382:intron | 45.0% |
| ! | TTTGAGAAGAGCACACTCCA+AGG | - | chr2.3:1441071-1441090 | MS.gene86382:CDS | 45.0% |
| ! | TTTGTTGGGATGGGTTTGAC+AGG | - | chr2.3:1442304-1442323 | MS.gene86382:intron | 45.0% |
| !! | ACATGATGGGTCGTTTGTCT+TGG | + | chr2.3:1440455-1440474 | None:intergenic | 45.0% |
| !! | ACGTACAAGCCGGTTTTGTA+AGG | - | chr2.3:1441444-1441463 | MS.gene86382:intron | 45.0% |
| !! | CCAACACTATCTGGTTTGGT+GGG | - | chr2.3:1441214-1441233 | MS.gene86382:intron | 45.0% |
| AACCTCTTTCTCCAGGGACT+AGG | - | chr2.3:1442504-1442523 | MS.gene86382:intron | 50.0% | |
| ACGCCCAACACTATCTGGTT+TGG | - | chr2.3:1441210-1441229 | MS.gene86382:intron | 50.0% | |
| ACGCGCCCAATATTACAAGC+AGG | + | chr2.3:1440321-1440340 | None:intergenic | 50.0% | |
| AGCTTGGTTGGGTCTATCGT+TGG | - | chr2.3:1441275-1441294 | MS.gene86382:intron | 50.0% | |
| AGGTTGTGACAGAGTAGCGA+AGG | + | chr2.3:1440385-1440404 | None:intergenic | 50.0% | |
| CACGCTTAACCCATTTGGGT+TGG | + | chr2.3:1441118-1441137 | None:intergenic | 50.0% | |
| CACTACGAGACCAACCCAAA+TGG | - | chr2.3:1441105-1441124 | MS.gene86382:CDS | 50.0% | |
| CCCACCAAACCAGATAGTGT+TGG | + | chr2.3:1441217-1441236 | None:intergenic | 50.0% | |
| CTCCAGGGACTAGGAGATTA+AGG | - | chr2.3:1442513-1442532 | MS.gene86382:intron | 50.0% | |
| CTCTGACATGTATCGGACAC+CGG | - | chr2.3:1442068-1442087 | MS.gene86382:intron | 50.0% | |
| CTTTAAATGGGCCCCGTAAG+TGG | + | chr2.3:1440986-1441005 | None:intergenic | 50.0% | |
| GAAGCTCTTCAGAGTGAAGC+TGG | - | chr2.3:1442339-1442358 | MS.gene86382:intron | 50.0% | |
| GCTTGGTTGGGTCTATCGTT+GGG | - | chr2.3:1441276-1441295 | MS.gene86382:intron | 50.0% | |
| TCAATCCCACCGTCCACTTA+CGG | - | chr2.3:1440970-1440989 | MS.gene86382:intron | 50.0% | |
| TGACAGAGTAGCGAAGGTTG+TGG | + | chr2.3:1440379-1440398 | None:intergenic | 50.0% | |
| ! | AACCAGATAGTGTTGGGCGT+AGG | + | chr2.3:1441210-1441229 | None:intergenic | 50.0% |
| ! | ACCAGATAGTGTTGGGCGTA+GGG | + | chr2.3:1441209-1441228 | None:intergenic | 50.0% |
| !! | ATTAACGGTGTCGACGTGTC+CGG | + | chr2.3:1441999-1442018 | None:intergenic | 50.0% |
| !! | CAAAACCGGCTTGTACGTTG+AGG | + | chr2.3:1441442-1441461 | None:intergenic | 50.0% |
| !! | CCCAACACTATCTGGTTTGG+TGG | - | chr2.3:1441213-1441232 | MS.gene86382:intron | 50.0% |
| !! | GTAGTGTTGGCTTGAGACCT+TGG | + | chr2.3:1441091-1441110 | None:intergenic | 50.0% |
| !! | TCTGGTTTGGTGGGTGTGTT+AGG | - | chr2.3:1441223-1441242 | MS.gene86382:intron | 50.0% |
| !! | TTGGGTTGGTCTCGTAGTGT+TGG | + | chr2.3:1441104-1441123 | None:intergenic | 50.0% |
| AAATGGGCCCCGTAAGTGGA+CGG | + | chr2.3:1440982-1441001 | None:intergenic | 55.0% | |
| AATCCCACCGTCCACTTACG+GGG | - | chr2.3:1440972-1440991 | MS.gene86382:intron | 55.0% | |
| ACACCGGACACGGCTTCTAT+TGG | - | chr2.3:1442084-1442103 | MS.gene86382:intron | 55.0% | |
| CAATCCCACCGTCCACTTAC+GGG | - | chr2.3:1440971-1440990 | MS.gene86382:intron | 55.0% | |
| CATGTATCGGACACCGGACA+CGG | - | chr2.3:1442074-1442093 | MS.gene86382:intron | 55.0% | |
| CTCCTAGTCCCTGGAGAAAG+AGG | + | chr2.3:1442509-1442528 | None:intergenic | 55.0% | |
| GCACTCCTCAACGTACAAGC+CGG | - | chr2.3:1441434-1441453 | MS.gene86382:intron | 55.0% | |
| GTGTGTTAGCGGCCAACACT+CGG | - | chr2.3:1441353-1441372 | MS.gene86382:intron | 55.0% | |
| ! | CCAGATAGTGTTGGGCGTAG+GGG | + | chr2.3:1441208-1441227 | None:intergenic | 55.0% |
| ! | GTTGGGCGTAGGGGTGTATT+GGG | + | chr2.3:1441199-1441218 | None:intergenic | 55.0% |
| ! | GTTGTGGCTTTTCGTGCACG+TGG | + | chr2.3:1440363-1440382 | None:intergenic | 55.0% |
| ! | TGGCTTTTCGTGCACGTGGT+GGG | + | chr2.3:1440359-1440378 | None:intergenic | 55.0% |
| ! | TGTTGGGCGTAGGGGTGTAT+TGG | + | chr2.3:1441200-1441219 | None:intergenic | 55.0% |
| ACGCTTCAGCCTGGCCCAAT+GGG | + | chr2.3:1441327-1441346 | None:intergenic | 60.0% | |
| CCCCTACGCCCAACACTATC+TGG | - | chr2.3:1441205-1441224 | MS.gene86382:intron | 60.0% | |
| GTCCACGCTTCAGGCCCATT+GGG | - | chr2.3:1441310-1441329 | MS.gene86382:intron | 60.0% | |
| GTTAGCGGCCAACACTCGGT+GGG | - | chr2.3:1441357-1441376 | MS.gene86382:intron | 60.0% | |
| TCCTGCATCGTCCACGCTTC+AGG | - | chr2.3:1441301-1441320 | MS.gene86382:intron | 60.0% | |
| TGTTAGCGGCCAACACTCGG+TGG | - | chr2.3:1441356-1441375 | MS.gene86382:intron | 60.0% | |
| ! | AGCGTGAGGGGGTGTGTTAG+CGG | - | chr2.3:1441342-1441361 | MS.gene86382:intron | 60.0% |
| ! | GTGGCTTTTCGTGCACGTGG+TGG | + | chr2.3:1440360-1440379 | None:intergenic | 60.0% |
| CACGCTTCAGCCTGGCCCAA+TGG | + | chr2.3:1441328-1441347 | None:intergenic | 65.0% | |
| CGTCCACGCTTCAGGCCCAT+TGG | - | chr2.3:1441309-1441328 | MS.gene86382:intron | 65.0% | |
| GCCTGAAGCGTGGACGATGC+AGG | + | chr2.3:1441305-1441324 | None:intergenic | 65.0% | |
| TGGGCCAGGCTGAAGCGTGA+GGG | - | chr2.3:1441329-1441348 | MS.gene86382:intron | 65.0% | |
| TTGGGCCAGGCTGAAGCGTG+AGG | - | chr2.3:1441328-1441347 | MS.gene86382:intron | 65.0% | |
| CACCCCCTCACGCTTCAGCC+TGG | + | chr2.3:1441336-1441355 | None:intergenic | 70.0% | |
| CGCTTCAGGCCCATTGGGCC+AGG | - | chr2.3:1441315-1441334 | MS.gene86382:intron | 70.0% | |
| GGCCAGGCTGAAGCGTGAGG+GGG | - | chr2.3:1441331-1441350 | MS.gene86382:intron | 70.0% | |
| GGCCCAATGGGCCTGAAGCG+TGG | + | chr2.3:1441315-1441334 | None:intergenic | 70.0% | |
| GGGCCAGGCTGAAGCGTGAG+GGG | - | chr2.3:1441330-1441349 | MS.gene86382:intron | 70.0% | |
| GGGCCCCGTAAGTGGACGGT+GGG | + | chr2.3:1440978-1440997 | None:intergenic | 70.0% | |
| TGGGCCCCGTAAGTGGACGG+TGG | + | chr2.3:1440979-1440998 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 1440291 | 1443183 | 1440291 | ID=MS.gene86382 |
| chr2.3 | mRNA | 1440291 | 1443183 | 1440291 | ID=MS.gene86382.t1;Parent=MS.gene86382 |
| chr2.3 | exon | 1442991 | 1443183 | 1442991 | ID=MS.gene86382.t1.exon1;Parent=MS.gene86382.t1 |
| chr2.3 | CDS | 1442991 | 1443183 | 1442991 | ID=cds.MS.gene86382.t1;Parent=MS.gene86382.t1 |
| chr2.3 | exon | 1442836 | 1442893 | 1442836 | ID=MS.gene86382.t1.exon2;Parent=MS.gene86382.t1 |
| chr2.3 | CDS | 1442836 | 1442893 | 1442836 | ID=cds.MS.gene86382.t1;Parent=MS.gene86382.t1 |
| chr2.3 | exon | 1441041 | 1441148 | 1441041 | ID=MS.gene86382.t1.exon3;Parent=MS.gene86382.t1 |
| chr2.3 | CDS | 1441041 | 1441148 | 1441041 | ID=cds.MS.gene86382.t1;Parent=MS.gene86382.t1 |
| chr2.3 | exon | 1440468 | 1440560 | 1440468 | ID=MS.gene86382.t1.exon4;Parent=MS.gene86382.t1 |
| chr2.3 | CDS | 1440468 | 1440560 | 1440468 | ID=cds.MS.gene86382.t1;Parent=MS.gene86382.t1 |
| chr2.3 | exon | 1440291 | 1440372 | 1440291 | ID=MS.gene86382.t1.exon5;Parent=MS.gene86382.t1 |
| chr2.3 | CDS | 1440291 | 1440372 | 1440291 | ID=cds.MS.gene86382.t1;Parent=MS.gene86382.t1 |
| Gene Sequence |
| Protein sequence |
