Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89036.t1 | XP_003597879.1 | 100 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.90E-94 | 355.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89036.t1 | Q9R0P6 | 58.5 | 176 | 71 | 2 | 6 | 180 | 5 | 179 | 8.3e-51 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89036.t1 | Q2HUB9 | 100.0 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.3e-94 | 355.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene89036 | 0.826096 | 3.27E-54 | -1.69E-46 |
| MS.gene049340 | MS.gene89036 | 0.822139 | 2.78E-53 | -1.69E-46 |
| MS.gene049341 | MS.gene89036 | 0.83446 | 2.96E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene89036 | 0.80761 | 4.65E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene89036 | 0.841088 | 5.87E-58 | -1.69E-46 |
| MS.gene049873 | MS.gene89036 | 0.819172 | 1.34E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene89036 | 0.816014 | 6.88E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene89036 | 0.82153 | 3.85E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene89036 | 0.818306 | 2.10E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene89036 | 0.801342 | 9.42E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene89036 | 0.812573 | 3.96E-51 | -1.69E-46 |
| MS.gene05134 | MS.gene89036 | 0.804258 | 2.35E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene89036 | 0.811712 | 6.10E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene89036 | 0.805496 | 1.30E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene89036 | 0.805324 | 1.41E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene89036 | 0.829132 | 6.11E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene89036 | 0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene89036 | 0.818618 | 1.78E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene89036 | 0.837706 | 4.44E-57 | -1.69E-46 |
| MS.gene052302 | MS.gene89036 | 0.804508 | 2.09E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene89036 | 0.839625 | 1.42E-57 | -1.69E-46 |
| MS.gene052880 | MS.gene89036 | 0.823212 | 1.56E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene89036 | 0.822285 | 2.57E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene89036 | 0.821984 | 3.02E-53 | -1.69E-46 |
| MS.gene054403 | MS.gene89036 | 0.800147 | 1.65E-48 | -1.69E-46 |
| MS.gene055162 | MS.gene89036 | 0.825392 | 4.81E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene89036 | 0.807219 | 5.62E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene89036 | 0.807879 | 4.07E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene89036 | 0.824979 | 6.02E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene89036 | -0.825733 | 3.99E-54 | -1.69E-46 |
| MS.gene055891 | MS.gene89036 | 0.810994 | 8.74E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene89036 | -0.828603 | 8.20E-55 | -1.69E-46 |
| MS.gene056075 | MS.gene89036 | 0.827253 | 1.73E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene89036 | 0.808379 | 3.19E-50 | -1.69E-46 |
| MS.gene056642 | MS.gene89036 | 0.807706 | 4.43E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene89036 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene89036 | 0.816343 | 5.81E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene89036 | 0.854463 | 1.21E-61 | -1.69E-46 |
| MS.gene058852 | MS.gene89036 | 0.817927 | 2.56E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene89036 | 0.825316 | 5.01E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene89036 | 0.815362 | 9.61E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene89036 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene89036 | 0.841818 | 3.77E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene89036 | 0.815508 | 8.92E-52 | -1.69E-46 |
| MS.gene060619 | MS.gene89036 | 0.820864 | 5.48E-53 | -1.69E-46 |
| MS.gene060917 | MS.gene89036 | 0.80515 | 1.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045264 | MS.gene89036 | PPI |
| MS.gene045262 | MS.gene89036 | PPI |
| MS.gene09040 | MS.gene89036 | PPI |
| MS.gene79108 | MS.gene89036 | PPI |
| MS.gene045260 | MS.gene89036 | PPI |
| MS.gene08445 | MS.gene89036 | PPI |
| MS.gene066829 | MS.gene89036 | PPI |
| MS.gene066813 | MS.gene89036 | PPI |
| MS.gene066812 | MS.gene89036 | PPI |
| MS.gene79110 | MS.gene89036 | PPI |
| MS.gene023404 | MS.gene89036 | PPI |
| MS.gene75597 | MS.gene89036 | PPI |
| MS.gene045263 | MS.gene89036 | PPI |
| MS.gene09203 | MS.gene89036 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89036.t1 | MTR_2g103570 | 100.000 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 5.11e-130 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89036.t1 | AT1G52600 | 91.667 | 180 | 15 | 0 | 1 | 180 | 1 | 180 | 4.51e-121 | 339 |
| MS.gene89036.t1 | AT3G15710 | 85.556 | 180 | 26 | 0 | 1 | 180 | 1 | 180 | 2.07e-110 | 312 |
Find 48 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGTTGTCGTTGTTCTTTC+TGG | -0.006320 | 2.4:+1967764 | MS.gene89036:CDS |
| TATATTCTCATCGGTGCTTT+GGG | 0.249893 | 2.4:+1969765 | MS.gene89036:CDS |
| GCTGCAAAGGCACCACATTA+TGG | 0.262708 | 2.4:+1969119 | MS.gene89036:CDS |
| CGTTGTTCTTTCTGGAAGTA+TGG | 0.268459 | 2.4:+1967772 | MS.gene89036:CDS |
| GGTTCTTACCTTATGTTGGC+TGG | 0.291373 | 2.4:+1969455 | MS.gene89036:intron |
| TTACGTCTGCACTGATAATA+TGG | 0.295460 | 2.4:+1967708 | MS.gene89036:CDS |
| GATCGTGCATCGTGTAATTA+AGG | 0.306443 | 2.4:+1968200 | MS.gene89036:CDS |
| GTATATTCTCATCGGTGCTT+TGG | 0.339154 | 2.4:+1969764 | MS.gene89036:intron |
| GTACATGAAAGAGGAGATAC+TGG | 0.367204 | 2.4:+1968847 | MS.gene89036:CDS |
| ACAATCTCTCCTGCGCGAAT+TGG | 0.370765 | 2.4:-1968000 | None:intergenic |
| CTGCAAAGGCACCACATTAT+GGG | 0.401647 | 2.4:+1969120 | MS.gene89036:CDS |
| ACGGATCTGAAGAGATTTGA+TGG | 0.414274 | 2.4:-1966893 | None:intergenic |
| ATGGCCAGCTTTGGCTGCAA+AGG | 0.415700 | 2.4:+1969106 | MS.gene89036:CDS |
| TTGGTAGGAGATAACAACTA+TGG | 0.420648 | 2.4:+1969060 | MS.gene89036:intron |
| TGTATGCTCATGGCCAGCTT+TGG | 0.429153 | 2.4:+1969097 | MS.gene89036:CDS |
| GGCAGGTTCTTACCTTATGT+TGG | 0.435021 | 2.4:+1969451 | MS.gene89036:intron |
| CCAGAAAGAACAACGACAAC+AGG | 0.443989 | 2.4:-1967764 | None:intergenic |
| TCTTTCTGGAAGTATGGAAC+CGG | 0.447654 | 2.4:+1967778 | MS.gene89036:CDS |
| CTTGTTCTTACACATGAGTA+AGG | 0.448520 | 2.4:+1967975 | MS.gene89036:CDS |
| CTCACTCAGGCTGTTAGCCT+TGG | 0.449557 | 2.4:+1966922 | MS.gene89036:CDS |
| AGCAAACAAACCTTGATGAT+AGG | 0.465854 | 2.4:-1969502 | None:intergenic |
| GGTGCCTTTGCAGCCAAAGC+TGG | 0.467005 | 2.4:-1969110 | None:intergenic |
| CACATTATGGGTAGAGCTGT+TGG | 0.467483 | 2.4:+1969132 | MS.gene89036:CDS |
| GTTCTTACCTTATGTTGGCT+GGG | 0.476337 | 2.4:+1969456 | MS.gene89036:CDS |
| ATTGTCACCCAGCCAACATA+AGG | 0.486894 | 2.4:-1969463 | None:intergenic |
| TTGCTTACACGTTTGAATCC+CGG | 0.492003 | 2.4:-1967797 | None:intergenic |
| TGGTAGGAGATAACAACTAT+GGG | 0.500018 | 2.4:+1969061 | MS.gene89036:intron |
| AGAAACGCAATGGGTTTCGT+TGG | 0.517115 | 2.4:+1966856 | None:intergenic |
| ACATTATGGGTAGAGCTGTT+GGG | 0.526062 | 2.4:+1969133 | MS.gene89036:CDS |
| CTTTCTGGAAGTATGGAACC+GGG | 0.531861 | 2.4:+1967779 | MS.gene89036:CDS |
| TTAATTACACGATGCACGAT+CGG | 0.532530 | 2.4:-1968198 | None:intergenic |
| AAGGCATTGATGTGCATCAC+TGG | 0.537420 | 2.4:+1967731 | MS.gene89036:CDS |
| GAGGTTGATGTTCTCACAAA+AGG | 0.541893 | 2.4:+1968871 | MS.gene89036:CDS |
| TGATAACTTCAAAAGAGTAA+AGG | 0.546067 | 2.4:+1969796 | MS.gene89036:CDS |
| CAAATCTCTTCAGATCCGTC+AGG | 0.547809 | 2.4:+1966897 | MS.gene89036:CDS |
| ATAACAACTATGGGGATGAC+AGG | 0.548283 | 2.4:+1969070 | MS.gene89036:CDS |
| GATCCGTCAGGTCCTCACTC+AGG | 0.557343 | 2.4:+1966909 | MS.gene89036:CDS |
| ATATTCTCATCGGTGCTTTG+GGG | 0.574182 | 2.4:+1969766 | MS.gene89036:CDS |
| TACATGAAAGAGGAGATACT+GGG | 0.588815 | 2.4:+1968848 | MS.gene89036:CDS |
| GACAGGCTACTGTATGCTCA+TGG | 0.602506 | 2.4:+1969087 | MS.gene89036:CDS |
| GTCTGCACTGATAATATGGA+AGG | 0.605731 | 2.4:+1967712 | MS.gene89036:CDS |
| CAGCCTGAGTGAGGACCTGA+CGG | 0.616226 | 2.4:-1966912 | None:intergenic |
| AGTAAGGATCCAATTCGCGC+AGG | 0.635833 | 2.4:+1967991 | MS.gene89036:CDS |
| CAACAGCTCTACCCATAATG+TGG | 0.657840 | 2.4:-1969131 | None:intergenic |
| CAAGGCTAACAGCCTGAGTG+AGG | 0.659133 | 2.4:-1966921 | None:intergenic |
| GGTAGGAGATAACAACTATG+GGG | 0.698337 | 2.4:+1969062 | MS.gene89036:intron |
| TGAAAGAGGAGATACTGGGG+AGG | 0.732394 | 2.4:+1968852 | MS.gene89036:CDS |
| ACATGAAAGAGGAGATACTG+GGG | 0.746258 | 2.4:+1968849 | MS.gene89036:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAAAATATATA+AGG | + | chr2.4:1968577-1968596 | MS.gene89036:intron | 0.0% |
| !!! | TTTTAATCAATTATTATATG+GGG | + | chr2.4:1967142-1967161 | MS.gene89036:intron | 10.0% |
| !! | TACGTTATACAATTTATATT+TGG | + | chr2.4:1967009-1967028 | MS.gene89036:intron | 15.0% |
| !! | TTTACATTTATGTATGTTTA+TGG | + | chr2.4:1969566-1969585 | MS.gene89036:intron | 15.0% |
| !!! | TCAATTTAGTTTATAATTCA+AGG | + | chr2.4:1967207-1967226 | MS.gene89036:intron | 15.0% |
| !!! | TTAACTTTATTTTGTCTTTT+TGG | + | chr2.4:1967506-1967525 | MS.gene89036:intron | 15.0% |
| !! | TAAATGGTTGTTTATCTTTA+AGG | + | chr2.4:1967261-1967280 | MS.gene89036:intron | 20.0% |
| !! | TATTAGATACAGAATTACTA+AGG | - | chr2.4:1967839-1967858 | None:intergenic | 20.0% |
| !! | TTAGTTGTCAATTTATATAG+TGG | + | chr2.4:1968995-1969014 | MS.gene89036:intron | 20.0% |
| !! | TTTATGGGTTTATTGATAAA+TGG | + | chr2.4:1967245-1967264 | MS.gene89036:intron | 20.0% |
| !!! | ATCATGATTTTTAAACCAAT+GGG | + | chr2.4:1969626-1969645 | MS.gene89036:intron | 20.0% |
| !!! | ATTGGTTTAAAAATCATGAT+AGG | - | chr2.4:1969626-1969645 | None:intergenic | 20.0% |
| !!! | TATCATGATTTTTAAACCAA+TGG | + | chr2.4:1969625-1969644 | MS.gene89036:intron | 20.0% |
| ! | AATAAACTGTTAATCCAAAC+AGG | + | chr2.4:1967589-1967608 | MS.gene89036:intron | 25.0% |
| ! | AATGAGATCTGTGATATTTA+AGG | + | chr2.4:1969238-1969257 | MS.gene89036:intron | 25.0% |
| ! | ATAAACTGTTAATCCAAACA+GGG | + | chr2.4:1967590-1967609 | MS.gene89036:intron | 25.0% |
| ! | ATCAAATTCACTATTGAGAT+TGG | - | chr2.4:1968951-1968970 | None:intergenic | 25.0% |
| ! | ATCACTAATCTGAGAAATAA+TGG | + | chr2.4:1968732-1968751 | MS.gene89036:intron | 25.0% |
| ! | ATTTCATTTCTTGAATGTGT+AGG | + | chr2.4:1968414-1968433 | MS.gene89036:intron | 25.0% |
| ! | CGAGAAAAAGGAAATATAAT+TGG | - | chr2.4:1968974-1968993 | None:intergenic | 25.0% |
| ! | CTATGAATAAAACAATGATC+TGG | - | chr2.4:1967651-1967670 | None:intergenic | 25.0% |
| ! | CTTGTTGCAATTCAAATTAT+AGG | - | chr2.4:1969708-1969727 | None:intergenic | 25.0% |
| ! | GACTTGTAACATAAAGATTA+AGG | + | chr2.4:1969176-1969195 | MS.gene89036:intron | 25.0% |
| ! | GATAAATAAGAACTAAAAGC+AGG | - | chr2.4:1968550-1968569 | None:intergenic | 25.0% |
| ! | TAAATGATAACACAATAGGT+TGG | - | chr2.4:1969531-1969550 | None:intergenic | 25.0% |
| ! | TATGTAGTTACAGTTTGAAT+AGG | - | chr2.4:1968444-1968463 | None:intergenic | 25.0% |
| ! | TCAAAAACATCAAAATTCGA+CGG | - | chr2.4:1967065-1967084 | None:intergenic | 25.0% |
| ! | TCAAATTCACTATTGAGATT+GGG | - | chr2.4:1968950-1968969 | None:intergenic | 25.0% |
| ! | TTGAAGTAAGTAAAACATAC+AGG | - | chr2.4:1968067-1968086 | None:intergenic | 25.0% |
| ! | TTTCATTTCTTGAATGTGTA+GGG | + | chr2.4:1968415-1968434 | MS.gene89036:intron | 25.0% |
| ! | TTTCTGATGCTAATGAATAT+TGG | + | chr2.4:1967935-1967954 | MS.gene89036:intron | 25.0% |
| !! | GATATTTAAGGTATTATGCA+TGG | + | chr2.4:1969250-1969269 | MS.gene89036:intron | 25.0% |
| !! | TAAATGCTTGATCATTTTGT+AGG | + | chr2.4:1968825-1968844 | MS.gene89036:intron | 25.0% |
| !! | TTCCTTTCAATTTTAGATGT+GGG | + | chr2.4:1967177-1967196 | MS.gene89036:intron | 25.0% |
| !! | TTTCCTTTCAATTTTAGATG+TGG | + | chr2.4:1967176-1967195 | MS.gene89036:intron | 25.0% |
| !!! | AATGAATATTGGTTTTTGCA+GGG | + | chr2.4:1967946-1967965 | MS.gene89036:intron | 25.0% |
| !!! | ATCTTTAAGGATTTTGATGA+GGG | + | chr2.4:1967274-1967293 | MS.gene89036:intron | 25.0% |
| !!! | TAATGAATATTGGTTTTTGC+AGG | + | chr2.4:1967945-1967964 | MS.gene89036:intron | 25.0% |
| !!! | TATCTTTAAGGATTTTGATG+AGG | + | chr2.4:1967273-1967292 | MS.gene89036:intron | 25.0% |
| !!! | TGATTGAGTTGAATTGAATT+GGG | - | chr2.4:1966964-1966983 | None:intergenic | 25.0% |
| !!! | TTGATTGAGTTGAATTGAAT+TGG | - | chr2.4:1966965-1966984 | None:intergenic | 25.0% |
| AAACAGCAAAATACAAGAGA+CGG | - | chr2.4:1969040-1969059 | None:intergenic | 30.0% | |
| ACATTGCTTGTATTTGTCAA+TGG | + | chr2.4:1969430-1969449 | MS.gene89036:intron | 30.0% | |
| CAGCTAAATGATAACACAAT+AGG | - | chr2.4:1969535-1969554 | None:intergenic | 30.0% | |
| GAATTAGCGTAGGATAAATT+AGG | - | chr2.4:1969347-1969366 | None:intergenic | 30.0% | |
| GATAAATTAGGATAAACCCT+TGG | - | chr2.4:1969335-1969354 | None:intergenic | 30.0% | |
| GCCTATGTAGATTATATGAA+CGG | + | chr2.4:1967612-1967631 | MS.gene89036:intron | 30.0% | |
| GTGAGGAATTCTAATGTTAA+GGG | + | chr2.4:1967303-1967322 | MS.gene89036:intron | 30.0% | |
| TGGATAAGATTGATATTACC+TGG | + | chr2.4:1968752-1968771 | MS.gene89036:intron | 30.0% | |
| TGTGAGGAATTCTAATGTTA+AGG | + | chr2.4:1967302-1967321 | MS.gene89036:intron | 30.0% | |
| TGTTATCATTTAGCTGAAGT+TGG | + | chr2.4:1969539-1969558 | MS.gene89036:intron | 30.0% | |
| TTGACAACTAAACGAGAAAA+AGG | - | chr2.4:1968986-1969005 | None:intergenic | 30.0% | |
| ! | AACCCACATCTAAAATTGAA+AGG | - | chr2.4:1967182-1967201 | None:intergenic | 30.0% |
| ! | AATATCTTGTCATTTGCAAG+TGG | + | chr2.4:1968680-1968699 | MS.gene89036:intron | 30.0% |
| ! | ATTTTGTAGGTACATGAAAG+AGG | + | chr2.4:1968838-1968857 | MS.gene89036:intron | 30.0% |
| ! | GTTTTGCAGTATATTCTCAT+CGG | + | chr2.4:1969756-1969775 | MS.gene89036:intron | 30.0% |
| ! | TTAAGGTAAGCTCAGTATTT+TGG | + | chr2.4:1968217-1968236 | MS.gene89036:intron | 30.0% |
| ! | TTTTTCGTGTTGTGGTTTAT+GGG | + | chr2.4:1967230-1967249 | MS.gene89036:intron | 30.0% |
| !! | ATTGAGTTGAATTGAATTGG+GGG | - | chr2.4:1966962-1966981 | None:intergenic | 30.0% |
| !! | GATTGAGTTGAATTGAATTG+GGG | - | chr2.4:1966963-1966982 | None:intergenic | 30.0% |
| !! | TCTTTAAGGATTTTGATGAG+GGG | + | chr2.4:1967275-1967294 | MS.gene89036:intron | 30.0% |
| !!! | ATGAATATTGGTTTTTGCAG+GGG | + | chr2.4:1967947-1967966 | MS.gene89036:intron | 30.0% |
| !!! | CTCTTGTATTTTGCTGTTTT+TGG | + | chr2.4:1969041-1969060 | MS.gene89036:intron | 30.0% |
| !!! | GTACCCTTTTTTTTCCTTTA+GGG | + | chr2.4:1968165-1968184 | MS.gene89036:intron | 30.0% |
| !!! | TGTACCCTTTTTTTTCCTTT+AGG | + | chr2.4:1968164-1968183 | MS.gene89036:intron | 30.0% |
| !!! | TGTATTTTGCTGTTTTTGGT+AGG | + | chr2.4:1969045-1969064 | MS.gene89036:intron | 30.0% |
| AAAATTCGACGGTTTCAAAG+TGG | - | chr2.4:1967054-1967073 | None:intergenic | 35.0% | |
| AACAGCAAAATACAAGAGAC+GGG | - | chr2.4:1969039-1969058 | None:intergenic | 35.0% | |
| ATACAGGATATACAACAGAG+AGG | - | chr2.4:1968051-1968070 | None:intergenic | 35.0% | |
| ATAGGACCCAGATACAAAAA+TGG | - | chr2.4:1968513-1968532 | None:intergenic | 35.0% | |
| ATCCACACATAATTGTCTTC+TGG | + | chr2.4:1968344-1968363 | MS.gene89036:intron | 35.0% | |
| CGTCCCTAAAGGAAAAAAAA+GGG | - | chr2.4:1968171-1968190 | None:intergenic | 35.0% | |
| CTTGTTCTTACACATGAGTA+AGG | + | chr2.4:1967975-1967994 | MS.gene89036:CDS | 35.0% | |
| GACTGAAAAACCTATCATCA+AGG | + | chr2.4:1969492-1969511 | MS.gene89036:CDS | 35.0% | |
| GATCTACTTGCTCTAATGTA+AGG | - | chr2.4:1969686-1969705 | None:intergenic | 35.0% | |
| GCCGTTCATATAATCTACAT+AGG | - | chr2.4:1967616-1967635 | None:intergenic | 35.0% | |
| GTCTCACAGACTTATATGAT+TGG | - | chr2.4:1967358-1967377 | None:intergenic | 35.0% | |
| GTGATAGATATTCCACAAGT+AGG | - | chr2.4:1969292-1969311 | None:intergenic | 35.0% | |
| TAAACCCTTGGTATGTTCAA+AGG | - | chr2.4:1969323-1969342 | None:intergenic | 35.0% | |
| TACATGAAAGAGGAGATACT+GGG | + | chr2.4:1968848-1968867 | MS.gene89036:CDS | 35.0% | |
| TATAAGTCTGTGAGACTGTT+TGG | + | chr2.4:1967362-1967381 | MS.gene89036:intron | 35.0% | |
| TATGGTGAAACCTATCATCA+AGG | + | chr2.4:1969584-1969603 | MS.gene89036:intron | 35.0% | |
| TCCTTACTGACAAAATCTGT+TGG | + | chr2.4:1968139-1968158 | MS.gene89036:intron | 35.0% | |
| TCGTCCCTAAAGGAAAAAAA+AGG | - | chr2.4:1968172-1968191 | None:intergenic | 35.0% | |
| TGAACCTTTGAACATACCAA+GGG | + | chr2.4:1969316-1969335 | MS.gene89036:intron | 35.0% | |
| TGACACTGTACTGTTATTGT+AGG | - | chr2.4:1967866-1967885 | None:intergenic | 35.0% | |
| TGGTAGGAGATAACAACTAT+GGG | + | chr2.4:1969061-1969080 | MS.gene89036:intron | 35.0% | |
| TTAATTACACGATGCACGAT+CGG | - | chr2.4:1968201-1968220 | None:intergenic | 35.0% | |
| TTATCCTACGCTAATTCCTA+CGG | + | chr2.4:1969350-1969369 | MS.gene89036:intron | 35.0% | |
| TTGAACCTTTGAACATACCA+AGG | + | chr2.4:1969315-1969334 | MS.gene89036:intron | 35.0% | |
| TTGGTAGGAGATAACAACTA+TGG | + | chr2.4:1969060-1969079 | MS.gene89036:intron | 35.0% | |
| ! | AAGCATTTAGAGTCTCAAAC+AGG | - | chr2.4:1968814-1968833 | None:intergenic | 35.0% |
| ! | AGCAAACAAACCTTGATGAT+AGG | - | chr2.4:1969505-1969524 | None:intergenic | 35.0% |
| ! | ATGATAACACAATAGGTTGG+CGG | - | chr2.4:1969528-1969547 | None:intergenic | 35.0% |
| ! | ATTCAAGGTTTTTCGTGTTG+TGG | + | chr2.4:1967222-1967241 | MS.gene89036:intron | 35.0% |
| ! | CATAAGCAAACCTTGATGAT+AGG | - | chr2.4:1969597-1969616 | None:intergenic | 35.0% |
| ! | CGAAACATGCTTTGTTCTAT+AGG | - | chr2.4:1969384-1969403 | None:intergenic | 35.0% |
| ! | CTATCATCAAGGTTTGCTTA+TGG | + | chr2.4:1969595-1969614 | MS.gene89036:intron | 35.0% |
| ! | GTTTTTCGTGTTGTGGTTTA+TGG | + | chr2.4:1967229-1967248 | MS.gene89036:intron | 35.0% |
| ! | TATATTCTCATCGGTGCTTT+GGG | + | chr2.4:1969765-1969784 | MS.gene89036:CDS | 35.0% |
| ! | TCTAATGTTAAGGGCATGTT+TGG | + | chr2.4:1967312-1967331 | MS.gene89036:intron | 35.0% |
| ! | TTACGTCTGCACTGATAATA+TGG | + | chr2.4:1967708-1967727 | MS.gene89036:CDS | 35.0% |
| !!! | TGAATATTGGTTTTTGCAGG+GGG | + | chr2.4:1967948-1967967 | MS.gene89036:intron | 35.0% |
| AACTTGTGGAAACTGGAGAT+TGG | + | chr2.4:1968704-1968723 | MS.gene89036:intron | 40.0% | |
| AAGTAGTTCAAACAGCACAG+AGG | - | chr2.4:1968655-1968674 | None:intergenic | 40.0% | |
| ACACATAATTGTCTTCTGGC+TGG | + | chr2.4:1968348-1968367 | MS.gene89036:intron | 40.0% | |
| ACATGAAAGAGGAGATACTG+GGG | + | chr2.4:1968849-1968868 | MS.gene89036:CDS | 40.0% | |
| ACATTATGGGTAGAGCTGTT+GGG | + | chr2.4:1969133-1969152 | MS.gene89036:CDS | 40.0% | |
| ACATTGTGAACTGATGCCAT+TGG | + | chr2.4:1968606-1968625 | MS.gene89036:intron | 40.0% | |
| ACGGATCTGAAGAGATTTGA+TGG | - | chr2.4:1966896-1966915 | None:intergenic | 40.0% | |
| AGAGGTTCAAAAAGTGAAGG+AGG | - | chr2.4:1968637-1968656 | None:intergenic | 40.0% | |
| AGCCAGAAGACAATTATGTG+TGG | - | chr2.4:1968349-1968368 | None:intergenic | 40.0% | |
| AGTGGAAAATCATAGCCCAT+TGG | - | chr2.4:1969644-1969663 | None:intergenic | 40.0% | |
| ATAACAACTATGGGGATGAC+AGG | + | chr2.4:1969070-1969089 | MS.gene89036:CDS | 40.0% | |
| CACAGAGGTTCAAAAAGTGA+AGG | - | chr2.4:1968640-1968659 | None:intergenic | 40.0% | |
| CAGGTAGTGACTATGTTGAT+AGG | - | chr2.4:1968531-1968550 | None:intergenic | 40.0% | |
| GAAAAAGTTGTTCACAGTGC+TGG | + | chr2.4:1968379-1968398 | MS.gene89036:intron | 40.0% | |
| GAGCTTACCAAGCTTGATTT+GGG | + | chr2.4:1968480-1968499 | MS.gene89036:intron | 40.0% | |
| GATCGTGCATCGTGTAATTA+AGG | + | chr2.4:1968200-1968219 | MS.gene89036:CDS | 40.0% | |
| GGTAGGAGATAACAACTATG+GGG | + | chr2.4:1969062-1969081 | MS.gene89036:intron | 40.0% | |
| GTACATGAAAGAGGAGATAC+TGG | + | chr2.4:1968847-1968866 | MS.gene89036:CDS | 40.0% | |
| TAATCTACATAGGCCCTGTT+TGG | - | chr2.4:1967606-1967625 | None:intergenic | 40.0% | |
| TCTATAGGAATGCAAACCGT+AGG | - | chr2.4:1969369-1969388 | None:intergenic | 40.0% | |
| TGAGCTTACCAAGCTTGATT+TGG | + | chr2.4:1968479-1968498 | MS.gene89036:intron | 40.0% | |
| TGCTTGAAGATACCTACTTG+TGG | + | chr2.4:1969277-1969296 | MS.gene89036:intron | 40.0% | |
| TGCTTGTATTTGTCAATGGC+AGG | + | chr2.4:1969434-1969453 | MS.gene89036:intron | 40.0% | |
| TTGCTTACACGTTTGAATCC+CGG | - | chr2.4:1967800-1967819 | None:intergenic | 40.0% | |
| ! | ATATTCTCATCGGTGCTTTG+GGG | + | chr2.4:1969766-1969785 | MS.gene89036:CDS | 40.0% |
| ! | ATTTGGTAGCTGCATTGATC+TGG | + | chr2.4:1967026-1967045 | MS.gene89036:intron | 40.0% |
| ! | CGTTGTTCTTTCTGGAAGTA+TGG | + | chr2.4:1967772-1967791 | MS.gene89036:CDS | 40.0% |
| ! | GCCAACAGATTTTGTCAGTA+AGG | - | chr2.4:1968143-1968162 | None:intergenic | 40.0% |
| ! | GTATATTCTCATCGGTGCTT+TGG | + | chr2.4:1969764-1969783 | MS.gene89036:intron | 40.0% |
| ! | GTCTGCACTGATAATATGGA+AGG | + | chr2.4:1967712-1967731 | MS.gene89036:CDS | 40.0% |
| ! | GTTCTTACCTTATGTTGGCT+GGG | + | chr2.4:1969456-1969475 | MS.gene89036:CDS | 40.0% |
| ! | TCTTTCTGGAAGTATGGAAC+CGG | + | chr2.4:1967778-1967797 | MS.gene89036:CDS | 40.0% |
| ! | TGCTGAATGTGACTTTGAGA+CGG | + | chr2.4:1968275-1968294 | MS.gene89036:intron | 40.0% |
| ! | TGTCTTCTGGCTGGAATATT+AGG | + | chr2.4:1968357-1968376 | MS.gene89036:intron | 40.0% |
| ! | TGTTAAGGGCATGTTTGGAT+TGG | + | chr2.4:1967317-1967336 | MS.gene89036:intron | 40.0% |
| ! | TTTGGTAGCTGCATTGATCT+GGG | + | chr2.4:1967027-1967046 | MS.gene89036:intron | 40.0% |
| ! | TTTTCCTTGTGTTCTGCTTC+AGG | + | chr2.4:1967677-1967696 | MS.gene89036:intron | 40.0% |
| !! | GAGGTTGATGTTCTCACAAA+AGG | + | chr2.4:1968871-1968890 | MS.gene89036:CDS | 40.0% |
| !! | GTGGGTCCATTTTTGTATCT+GGG | + | chr2.4:1968504-1968523 | MS.gene89036:intron | 40.0% |
| !! | GTTGACTTGAGAGAGAAAAG+TGG | - | chr2.4:1969662-1969681 | None:intergenic | 40.0% |
| !! | TGTGGGTCCATTTTTGTATC+TGG | + | chr2.4:1968503-1968522 | MS.gene89036:intron | 40.0% |
| AAGTGGCAACTTGTGGAAAC+TGG | + | chr2.4:1968697-1968716 | MS.gene89036:intron | 45.0% | |
| ACCTTCTCATGTTAGAGCCT+TGG | + | chr2.4:1968310-1968329 | MS.gene89036:intron | 45.0% | |
| AGTGAAGGAGGAACTTCCAA+TGG | - | chr2.4:1968625-1968644 | None:intergenic | 45.0% | |
| ATTGTCACCCAGCCAACATA+AGG | - | chr2.4:1969466-1969485 | None:intergenic | 45.0% | |
| CAAACCGTAGGAATTAGCGT+AGG | - | chr2.4:1969357-1969376 | None:intergenic | 45.0% | |
| CAAATCTCTTCAGATCCGTC+AGG | + | chr2.4:1966897-1966916 | MS.gene89036:CDS | 45.0% | |
| CAACAGCTCTACCCATAATG+TGG | - | chr2.4:1969134-1969153 | None:intergenic | 45.0% | |
| CAACGCATGAAGATCAATCC+AGG | - | chr2.4:1968773-1968792 | None:intergenic | 45.0% | |
| CACATTATGGGTAGAGCTGT+TGG | + | chr2.4:1969132-1969151 | MS.gene89036:CDS | 45.0% | |
| CATTTGCAAGTGGCAACTTG+TGG | + | chr2.4:1968690-1968709 | MS.gene89036:intron | 45.0% | |
| CCAGAAAGAACAACGACAAC+AGG | - | chr2.4:1967767-1967786 | None:intergenic | 45.0% | |
| CCTGTTGTCGTTGTTCTTTC+TGG | + | chr2.4:1967764-1967783 | MS.gene89036:CDS | 45.0% | |
| GGCAGGTTCTTACCTTATGT+TGG | + | chr2.4:1969451-1969470 | MS.gene89036:intron | 45.0% | |
| GGTTCTTACCTTATGTTGGC+TGG | + | chr2.4:1969455-1969474 | MS.gene89036:intron | 45.0% | |
| GTGGATCATCTCATGATCCA+AGG | - | chr2.4:1968330-1968349 | None:intergenic | 45.0% | |
| TTTGATGAGGGGAGATTGTG+AGG | + | chr2.4:1967286-1967305 | MS.gene89036:intron | 45.0% | |
| ! | AAGTTGTTCACAGTGCTGGA+TGG | + | chr2.4:1968383-1968402 | MS.gene89036:intron | 45.0% |
| ! | CTTTCTGGAAGTATGGAACC+GGG | + | chr2.4:1967779-1967798 | MS.gene89036:CDS | 45.0% |
| ! | TCCAAGGCTCTAACATGAGA+AGG | - | chr2.4:1968314-1968333 | None:intergenic | 45.0% |
| !! | AAGGCATTGATGTGCATCAC+TGG | + | chr2.4:1967731-1967750 | MS.gene89036:CDS | 45.0% |
| !! | ACCAAGCTTGATTTGGGTGT+GGG | + | chr2.4:1968486-1968505 | MS.gene89036:intron | 45.0% |
| !! | CTGCAAAGGCACCACATTAT+GGG | + | chr2.4:1969120-1969139 | MS.gene89036:CDS | 45.0% |
| !! | TACCAAGCTTGATTTGGGTG+TGG | + | chr2.4:1968485-1968504 | MS.gene89036:intron | 45.0% |
| !! | ATATAATAATTGATTAAAAT+TGG | - | chr2.4:1967141-1967160 | None:intergenic | 5.0% |
| !!! | AATTTTAATCAATTATTATA+TGG | + | chr2.4:1967140-1967159 | MS.gene89036:intron | 5.0% |
| !!! | ATTTTAATCAATTATTATAT+GGG | + | chr2.4:1967141-1967160 | MS.gene89036:intron | 5.0% |
| !!! | TTTTTATTTTTGTATTTTTA+GGG | + | chr2.4:1967100-1967119 | MS.gene89036:intron | 5.0% |
| !!! | TTTTTTATTTTTGTATTTTT+AGG | + | chr2.4:1967099-1967118 | MS.gene89036:intron | 5.0% |
| ACAATCTCTCCTGCGCGAAT+TGG | - | chr2.4:1968003-1968022 | None:intergenic | 50.0% | |
| ACCCACACCCAAATCAAGCT+TGG | - | chr2.4:1968490-1968509 | None:intergenic | 50.0% | |
| AGTAAGGATCCAATTCGCGC+AGG | + | chr2.4:1967991-1968010 | MS.gene89036:CDS | 50.0% | |
| CATGCCTGAAGCAGAACACA+AGG | - | chr2.4:1967684-1967703 | None:intergenic | 50.0% | |
| GACAGGCTACTGTATGCTCA+TGG | + | chr2.4:1969087-1969106 | MS.gene89036:CDS | 50.0% | |
| GGGAAAGAGAGAACTGACCA+AGG | - | chr2.4:1966942-1966961 | None:intergenic | 50.0% | |
| TCGGAATCTCTCGTCCCTAA+AGG | - | chr2.4:1968182-1968201 | None:intergenic | 50.0% | |
| TGAAAGAGGAGATACTGGGG+AGG | + | chr2.4:1968852-1968871 | MS.gene89036:CDS | 50.0% | |
| TGTATGCTCATGGCCAGCTT+TGG | + | chr2.4:1969097-1969116 | MS.gene89036:CDS | 50.0% | |
| ! | TGTTCACAGTGCTGGATGGA+GGG | + | chr2.4:1968387-1968406 | MS.gene89036:intron | 50.0% |
| ! | TTGTTCACAGTGCTGGATGG+AGG | + | chr2.4:1968386-1968405 | MS.gene89036:intron | 50.0% |
| !! | GCTGCAAAGGCACCACATTA+TGG | + | chr2.4:1969119-1969138 | MS.gene89036:CDS | 50.0% |
| CAAGGCTAACAGCCTGAGTG+AGG | - | chr2.4:1966924-1966943 | None:intergenic | 55.0% | |
| ! | ATGGCCAGCTTTGGCTGCAA+AGG | + | chr2.4:1969106-1969125 | MS.gene89036:CDS | 55.0% |
| ! | CTCACTCAGGCTGTTAGCCT+TGG | + | chr2.4:1966922-1966941 | MS.gene89036:CDS | 55.0% |
| CAGCCTGAGTGAGGACCTGA+CGG | - | chr2.4:1966915-1966934 | None:intergenic | 60.0% | |
| GATCCGTCAGGTCCTCACTC+AGG | + | chr2.4:1966909-1966928 | MS.gene89036:CDS | 60.0% | |
| GGTGCCTTTGCAGCCAAAGC+TGG | - | chr2.4:1969113-1969132 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 1966865 | 1969815 | 1966865 | ID=MS.gene89036 |
| chr2.4 | mRNA | 1966865 | 1969815 | 1966865 | ID=MS.gene89036.t1;Parent=MS.gene89036 |
| chr2.4 | exon | 1966865 | 1966943 | 1966865 | ID=MS.gene89036.t1.exon1;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1966865 | 1966943 | 1966865 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| chr2.4 | exon | 1967699 | 1967811 | 1967699 | ID=MS.gene89036.t1.exon2;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1967699 | 1967811 | 1967699 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| chr2.4 | exon | 1967967 | 1968038 | 1967967 | ID=MS.gene89036.t1.exon3;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1967967 | 1968038 | 1967967 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| chr2.4 | exon | 1968186 | 1968221 | 1968186 | ID=MS.gene89036.t1.exon4;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1968186 | 1968221 | 1968186 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| chr2.4 | exon | 1968847 | 1968892 | 1968847 | ID=MS.gene89036.t1.exon5;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1968847 | 1968892 | 1968847 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| chr2.4 | exon | 1969067 | 1969154 | 1969067 | ID=MS.gene89036.t1.exon6;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1969067 | 1969154 | 1969067 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| chr2.4 | exon | 1969456 | 1969513 | 1969456 | ID=MS.gene89036.t1.exon7;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1969456 | 1969513 | 1969456 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| chr2.4 | exon | 1969765 | 1969815 | 1969765 | ID=MS.gene89036.t1.exon8;Parent=MS.gene89036.t1 |
| chr2.4 | CDS | 1969765 | 1969815 | 1969765 | ID=cds.MS.gene89036.t1;Parent=MS.gene89036.t1 |
| Gene Sequence |
| Protein sequence |
