Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90146.t1 | XP_003596499.2 | 98.8 | 802 | 10 | 0 | 1 | 802 | 1 | 802 | 0.00E+00 | 1615.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90146.t1 | Q8L6Y1 | 75.2 | 804 | 189 | 4 | 1 | 802 | 1 | 796 | 0.0e+00 | 1264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90146.t1 | G7IR70 | 98.8 | 802 | 10 | 0 | 1 | 802 | 1 | 802 | 0.0e+00 | 1615.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene90146 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene90146 | 0.819996 | 8.66E-53 | -1.69E-46 |
| MS.gene049666 | MS.gene90146 | 0.816886 | 4.39E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene90146 | 0.805217 | 1.48E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene90146 | 0.836404 | 9.54E-57 | -1.69E-46 |
| MS.gene049825 | MS.gene90146 | 0.81777 | 2.78E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene90146 | 0.83345 | 5.30E-56 | -1.69E-46 |
| MS.gene050559 | MS.gene90146 | 0.832692 | 8.17E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene90146 | 0.825818 | 3.81E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene90146 | 0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene90146 | 0.820426 | 6.90E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene90146 | 0.821177 | 4.64E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene90146 | 0.848247 | 6.92E-60 | -1.69E-46 |
| MS.gene052208 | MS.gene90146 | 0.818366 | 2.03E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene90146 | -0.821438 | 4.04E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene90146 | 0.826404 | 2.76E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene90146 | 0.837782 | 4.24E-57 | -1.69E-46 |
| MS.gene053122 | MS.gene90146 | 0.812913 | 3.34E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene90146 | 0.820503 | 6.63E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene90146 | 0.860518 | 1.95E-63 | -1.69E-46 |
| MS.gene053599 | MS.gene90146 | 0.813664 | 2.28E-51 | -1.69E-46 |
| MS.gene053883 | MS.gene90146 | 0.819343 | 1.22E-52 | -1.69E-46 |
| MS.gene053995 | MS.gene90146 | 0.802267 | 6.08E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene90146 | 0.812013 | 5.25E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene90146 | 0.818572 | 1.83E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene90146 | 0.802392 | 5.73E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene90146 | 0.828997 | 6.58E-55 | -1.69E-46 |
| MS.gene055778 | MS.gene90146 | 0.828 | 1.15E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene90146 | 0.841083 | 5.89E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene90146 | 0.822855 | 1.89E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene90146 | 0.832978 | 6.94E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene90146 | 0.839303 | 1.72E-57 | -1.69E-46 |
| MS.gene056498 | MS.gene90146 | 0.81208 | 5.08E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene90146 | 0.814665 | 1.37E-51 | -1.69E-46 |
| MS.gene057027 | MS.gene90146 | 0.800279 | 1.55E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene90146 | 0.805855 | 1.09E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene90146 | 0.815326 | 9.79E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene90146 | 0.837144 | 6.18E-57 | -1.69E-46 |
| MS.gene057705 | MS.gene90146 | 0.820495 | 6.66E-53 | -1.69E-46 |
| MS.gene05953 | MS.gene90146 | 0.813917 | 2.01E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene90146 | 0.83191 | 1.28E-55 | -1.69E-46 |
| MS.gene059625 | MS.gene90146 | 0.821728 | 3.46E-53 | -1.69E-46 |
| MS.gene060365 | MS.gene90146 | 0.823074 | 1.68E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene90146 | 0.842508 | 2.48E-58 | -1.69E-46 |
| MS.gene060521 | MS.gene90146 | 0.837453 | 5.15E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene90146 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene90146 | 0.807396 | 5.16E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90146 | MS.gene050252 | PPI |
| MS.gene24706 | MS.gene90146 | PPI |
| MS.gene06645 | MS.gene90146 | PPI |
| MS.gene81765 | MS.gene90146 | PPI |
| MS.gene056896 | MS.gene90146 | PPI |
| MS.gene007189 | MS.gene90146 | PPI |
| MS.gene057206 | MS.gene90146 | PPI |
| MS.gene06859 | MS.gene90146 | PPI |
| MS.gene050290 | MS.gene90146 | PPI |
| MS.gene013534 | MS.gene90146 | PPI |
| MS.gene034846 | MS.gene90146 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90146.t1 | MTR_2g081180 | 98.753 | 802 | 10 | 0 | 1 | 802 | 1 | 802 | 0.0 | 1655 |
| MS.gene90146.t1 | MTR_2g081180 | 97.132 | 802 | 9 | 1 | 1 | 802 | 1 | 788 | 0.0 | 1618 |
| MS.gene90146.t1 | MTR_2g081180 | 96.509 | 802 | 10 | 1 | 1 | 802 | 1 | 784 | 0.0 | 1607 |
| MS.gene90146.t1 | MTR_2g081180 | 98.053 | 565 | 11 | 0 | 238 | 802 | 4 | 568 | 0.0 | 1155 |
| MS.gene90146.t1 | MTR_2g081180 | 98.299 | 529 | 9 | 0 | 274 | 802 | 1 | 529 | 0.0 | 1087 |
| MS.gene90146.t1 | MTR_8g464880 | 62.500 | 120 | 37 | 2 | 629 | 745 | 1 | 115 | 4.89e-41 | 147 |
| MS.gene90146.t1 | MTR_4g077475 | 63.636 | 66 | 24 | 0 | 737 | 802 | 64 | 129 | 2.40e-23 | 96.7 |
| MS.gene90146.t1 | MTR_4g077475 | 70.000 | 60 | 17 | 1 | 546 | 605 | 1 | 59 | 8.71e-19 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90146.t1 | AT3G20630 | 75.249 | 804 | 189 | 4 | 1 | 802 | 1 | 796 | 0.0 | 1277 |
Find 194 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTCAAAATTGGTATTT+TGG | 0.154188 | 2.3:-17168062 | None:intergenic |
| CCACTTCCTGCCCACTTTCT+TGG | 0.161699 | 2.3:-17168092 | None:intergenic |
| TAGACGCGATTGGTGGGTTC+TGG | 0.186615 | 2.3:-17163461 | None:intergenic |
| TGTTTCACAGCTGGTTTCTA+TGG | 0.210475 | 2.3:+17171655 | MS.gene90146:CDS |
| GATTCTATTCCATTCAAAAT+TGG | 0.229016 | 2.3:-17168070 | None:intergenic |
| TCTTTCTATCAGTTGTTATT+TGG | 0.230308 | 2.3:+17168242 | MS.gene90146:intron |
| GGCTGGTCTGACATCATTTC+CGG | 0.268886 | 2.3:+17170852 | MS.gene90146:CDS |
| TTGAGAAATTTCAGAAGAAT+TGG | 0.277779 | 2.3:+17170140 | MS.gene90146:intron |
| CAGCACGATCTTTCTCTTCA+AGG | 0.285617 | 2.3:+17168289 | MS.gene90146:CDS |
| TTCCACAGGATATCGACTTA+TGG | 0.286341 | 2.3:+17172448 | MS.gene90146:intron |
| TTCTTCAAAGGCCTGTCTTC+CGG | 0.312227 | 2.3:-17163771 | None:intergenic |
| TCCACAGGATATCGACTTAT+GGG | 0.329168 | 2.3:+17172449 | MS.gene90146:intron |
| ATATCCTTCTGTGGAATTAC+CGG | 0.332484 | 2.3:+17164722 | MS.gene90146:CDS |
| GTTGATATGCTACTTTCATT+TGG | 0.336414 | 2.3:+17171924 | MS.gene90146:CDS |
| CATGTCCTTGGGAGGATTAA+TGG | 0.341823 | 2.3:-17172576 | None:intergenic |
| GTGACAAGACAGACAATCTT+TGG | 0.355394 | 2.3:+17165039 | MS.gene90146:CDS |
| GACATCATTTCCGGATTATC+TGG | 0.361596 | 2.3:+17170861 | MS.gene90146:CDS |
| ACATCTTGAAAGATGGTAGA+TGG | 0.364517 | 2.3:+17172522 | MS.gene90146:CDS |
| CTTTGAAAAGACTGGAAATC+CGG | 0.366390 | 2.3:+17163713 | MS.gene90146:CDS |
| GGGAGCATTTCCACCCAGTT+GGG | 0.379352 | 2.3:-17165013 | None:intergenic |
| GAAAAGTTGCATACAATAGA+AGG | 0.386707 | 2.3:+17169990 | MS.gene90146:CDS |
| CGGAACTATTACTGCTGATC+TGG | 0.387196 | 2.3:+17165178 | MS.gene90146:CDS |
| CAAATGCCTTCTTTAGACTT+TGG | 0.387309 | 2.3:-17168403 | None:intergenic |
| CTTGCACATGGTTTACTGTC+TGG | 0.392484 | 2.3:+17168774 | MS.gene90146:CDS |
| CCAAACTTGAAACTCCTTGC+GGG | 0.398914 | 2.3:-17169938 | None:intergenic |
| AAACCTACCCTATTGGCTAT+AGG | 0.404548 | 2.3:+17163792 | MS.gene90146:CDS |
| TTTGAAGAAACCTACCCTAT+TGG | 0.404950 | 2.3:+17163785 | MS.gene90146:CDS |
| CCCGCAAGGAGTTTCAAGTT+TGG | 0.407324 | 2.3:+17169938 | MS.gene90146:CDS |
| TGACTGATATCAATGATATC+AGG | 0.409150 | 2.3:-17171037 | None:intergenic |
| GCACATGCGCAAATTTGTTA+TGG | 0.413937 | 2.3:+17170888 | MS.gene90146:CDS |
| GAAGACGAAGAAGCCGGTTC+CGG | 0.419600 | 2.3:+17163752 | MS.gene90146:CDS |
| AGAGCCACGCCCTCTCGAAA+TGG | 0.421013 | 2.3:-17171880 | None:intergenic |
| TCGGATAAATCAGCATCATT+TGG | 0.421423 | 2.3:-17172197 | None:intergenic |
| AGACGCGATTGGTGGGTTCT+GGG | 0.423164 | 2.3:-17163460 | None:intergenic |
| GTAAAGATAGCCCATGTCCT+TGG | 0.425428 | 2.3:-17172588 | None:intergenic |
| TGATTTCTCATCACTACAAA+AGG | 0.427517 | 2.3:+17167168 | MS.gene90146:CDS |
| AAAGGCCTGTCTTCCGGAAC+CGG | 0.427653 | 2.3:-17163765 | None:intergenic |
| TGGAATAGAATCCAAGAAAG+TGG | 0.428006 | 2.3:+17168081 | MS.gene90146:CDS |
| ACTGATGGAGTGATCCTTTG+TGG | 0.429861 | 2.3:+17165071 | MS.gene90146:CDS |
| TTCTTCACATGCAAATAAAC+CGG | 0.433166 | 2.3:-17163732 | None:intergenic |
| AACACAAACCTATAGCCAAT+AGG | 0.436243 | 2.3:-17163800 | None:intergenic |
| TGCATTTGGGAAGGATTATG+TGG | 0.443375 | 2.3:+17163683 | MS.gene90146:CDS |
| TGTTAGTTGCTTCATGCAAT+GGG | 0.443599 | 2.3:-17170039 | None:intergenic |
| TGTCGCATAGTAGAAAATTC+CGG | 0.445319 | 2.3:-17169477 | None:intergenic |
| GTTTCACAGCTGGTTTCTAT+GGG | 0.445621 | 2.3:+17171656 | MS.gene90146:CDS |
| GATTGGTCAATCTAGGAAAC+AGG | 0.446646 | 2.3:+17168142 | MS.gene90146:CDS |
| CGTAGCAAAGGTCATCAACC+TGG | 0.446947 | 2.3:+17171064 | MS.gene90146:CDS |
| TATGCATCTGTAGGTATTGA+TGG | 0.447383 | 2.3:+17164624 | MS.gene90146:intron |
| TTGTTAGTTGCTTCATGCAA+TGG | 0.453282 | 2.3:-17170040 | None:intergenic |
| GAAAGCTCACCGCAGATGTA+GGG | 0.456885 | 2.3:-17168932 | None:intergenic |
| TTGCACATGGTTTACTGTCT+GGG | 0.459136 | 2.3:+17168775 | MS.gene90146:CDS |
| GAGCCACGCCCTCTCGAAAT+GGG | 0.459446 | 2.3:-17171879 | None:intergenic |
| ACACAAACCTATAGCCAATA+GGG | 0.461237 | 2.3:-17163799 | None:intergenic |
| CAAGTGGAGCGTGCTAATGC+TGG | 0.464682 | 2.3:+17169899 | MS.gene90146:CDS |
| CTGTGAAACAATGTCTTCAT+TGG | 0.465041 | 2.3:-17171642 | None:intergenic |
| CTTTGGTTAAATTTGACTGA+TGG | 0.465186 | 2.3:+17165056 | MS.gene90146:CDS |
| ATTGTCTGTCTTGTCACATT+GGG | 0.467678 | 2.3:-17165033 | None:intergenic |
| GATCGTATCTTGTGTTCATC+GGG | 0.468245 | 2.3:+17169968 | MS.gene90146:CDS |
| TTGCTTGTAGACGCGATTGG+TGG | 0.470730 | 2.3:-17163468 | None:intergenic |
| TAAAGATAGCCCATGTCCTT+GGG | 0.473415 | 2.3:-17172587 | None:intergenic |
| AGAAAGCTCACCGCAGATGT+AGG | 0.474579 | 2.3:-17168933 | None:intergenic |
| ACTGCATCAAACACTACATC+TGG | 0.478137 | 2.3:+17172173 | MS.gene90146:CDS |
| TGAAGACATTGTTTCACAGC+TGG | 0.478207 | 2.3:+17171646 | MS.gene90146:CDS |
| CAAGCTTCTAAAGGCACCCT+TGG | 0.478820 | 2.3:-17170319 | None:intergenic |
| CTAGCTCACATGGAGGATCC+AGG | 0.478997 | 2.3:+17171755 | MS.gene90146:CDS |
| TGCTTGTAGACGCGATTGGT+GGG | 0.481175 | 2.3:-17163467 | None:intergenic |
| AGGTCCACAGTTGGATCAGC+AGG | 0.481485 | 2.3:-17168434 | None:intergenic |
| CCAAGAAAGTGGGCAGGAAG+TGG | 0.484253 | 2.3:+17168092 | MS.gene90146:CDS |
| ATGTGCAACACCAGATAATC+CGG | 0.485168 | 2.3:-17170871 | None:intergenic |
| AAGTCTAAAGAAGGCATTTG+AGG | 0.485504 | 2.3:+17168406 | MS.gene90146:CDS |
| CGCAAATTTGTTATGGAGGA+GGG | 0.487406 | 2.3:+17170895 | MS.gene90146:CDS |
| CATTAATCCTCCCAAGGACA+TGG | 0.488021 | 2.3:+17172577 | MS.gene90146:CDS |
| TTTAGTTGCTGCTAGCCATC+CGG | 0.489423 | 2.3:+17169458 | MS.gene90146:CDS |
| ATTTCTGAATCATCCTCAAC+GGG | 0.489963 | 2.3:-17171611 | None:intergenic |
| AGAAGCCGGTTCCGGAAGAC+AGG | 0.492278 | 2.3:+17163760 | MS.gene90146:CDS |
| CTGATGGAGTGATCCTTTGT+GGG | 0.494763 | 2.3:+17165072 | MS.gene90146:CDS |
| TTGACCAATCCTGTGTATCC+AGG | 0.496798 | 2.3:-17168129 | None:intergenic |
| ATTTGTTATGGAGGAGGGAT+GGG | 0.498587 | 2.3:+17170900 | MS.gene90146:CDS |
| GGTTGGAACTTTGAAAAGAC+TGG | 0.503883 | 2.3:+17163705 | MS.gene90146:CDS |
| TGGGAGCATTTCCACCCAGT+TGG | 0.505198 | 2.3:-17165014 | None:intergenic |
| TCAAGATGACGTTGCTCGAA+AGG | 0.505759 | 2.3:+17171950 | MS.gene90146:CDS |
| CTTGCAAGGCAAGCTTCTAA+AGG | 0.506121 | 2.3:-17170328 | None:intergenic |
| ATGGGAATTGTTAGCCACAT+TGG | 0.506553 | 2.3:+17172467 | MS.gene90146:CDS |
| TATGAAAGTGAAACATAGTC+AGG | 0.507916 | 2.3:-17164702 | None:intergenic |
| GCGCAAATTTGTTATGGAGG+AGG | 0.509069 | 2.3:+17170894 | MS.gene90146:CDS |
| TTGGGAAGGATTATGTGGGT+TGG | 0.509534 | 2.3:+17163688 | MS.gene90146:CDS |
| AGATCGTATCTTGTGTTCAT+CGG | 0.510145 | 2.3:+17169967 | MS.gene90146:CDS |
| TTGTGATAGGTCTGGTGATG+AGG | 0.514427 | 2.3:+17170288 | MS.gene90146:intron |
| CAGCATTAGCACGCTCCACT+TGG | 0.514650 | 2.3:-17169898 | None:intergenic |
| GCTCCCATTTCGAGAGGGCG+TGG | 0.514907 | 2.3:+17171876 | MS.gene90146:CDS |
| GGGGAAGAGCTTCTACCAGA+TGG | 0.515204 | 2.3:+17171085 | MS.gene90146:CDS |
| CGGGAGCTGAGAAGCTTGCA+AGG | 0.515232 | 2.3:-17170342 | None:intergenic |
| GCTAGATGCTGTGCTAAAAG+TGG | 0.518555 | 2.3:-17167133 | None:intergenic |
| CGGGCAACAAATACCTTCTC+CGG | 0.520812 | 2.3:-17164741 | None:intergenic |
| TTCAAATACTAGGAGCAAGA+AGG | 0.522847 | 2.3:+17169411 | MS.gene90146:intron |
| TGCTAGATGCGGGTGCTGAA+CGG | 0.523169 | 2.3:+17164898 | MS.gene90146:CDS |
| GCTATAAATACATCAAATGC+TGG | 0.525024 | 2.3:+17171707 | MS.gene90146:CDS |
| TATAAACCAAAGTCTAAAGA+AGG | 0.526780 | 2.3:+17168397 | MS.gene90146:CDS |
| TCCAACACATTATCATCCTC+CGG | 0.529571 | 2.3:-17167109 | None:intergenic |
| ATGTTGGAAACGGATGCATC+AGG | 0.530519 | 2.3:-17172143 | None:intergenic |
| TACACAGGATTGGTCAATCT+AGG | 0.531009 | 2.3:+17168135 | MS.gene90146:CDS |
| TTCTGTGGAATTACCGGAGA+AGG | 0.533894 | 2.3:+17164728 | MS.gene90146:CDS |
| TTCTTGCTTGTAGACGCGAT+TGG | 0.533981 | 2.3:-17163471 | None:intergenic |
| AATTTGTTATGGAGGAGGGA+TGG | 0.534308 | 2.3:+17170899 | MS.gene90146:CDS |
| GATTGTCTGTCTTGTCACAT+TGG | 0.534886 | 2.3:-17165034 | None:intergenic |
| AGTAGCATCCATGTTGGAAA+CGG | 0.535832 | 2.3:-17172153 | None:intergenic |
| ACAATGTCTTCATTGGCTAA+AGG | 0.540872 | 2.3:-17171635 | None:intergenic |
| ACTGCTGATCTGGAGGCAGC+AGG | 0.541599 | 2.3:+17165188 | MS.gene90146:CDS |
| TTCACTTTCATATCCTTCTG+TGG | 0.545000 | 2.3:+17164713 | MS.gene90146:CDS |
| GGGAAGAGCTTCTACCAGAT+GGG | 0.548105 | 2.3:+17171086 | MS.gene90146:CDS |
| GTGATGAGGTTGTACGTCCA+AGG | 0.550600 | 2.3:+17170302 | MS.gene90146:CDS |
| TCAAATACTAGGAGCAAGAA+GGG | 0.551715 | 2.3:+17169412 | MS.gene90146:intron |
| TAATGCTGGGAAAACTGAAC+TGG | 0.553010 | 2.3:+17169913 | MS.gene90146:CDS |
| AAGTGGAGCGTGCTAATGCT+GGG | 0.554489 | 2.3:+17169900 | MS.gene90146:CDS |
| TACCCACTCGCTGTAAAGCT+CGG | 0.555270 | 2.3:+17165158 | MS.gene90146:CDS |
| TGGACCTGGATACACAGGAT+TGG | 0.555748 | 2.3:+17168125 | MS.gene90146:CDS |
| TGATGCATCCGTTTCCAACA+TGG | 0.558113 | 2.3:+17172145 | MS.gene90146:CDS |
| ATCAAATGCTGGAGTAGAAG+AGG | 0.558286 | 2.3:+17171718 | MS.gene90146:CDS |
| AATATAACCTGTAGGTCGGC+TGG | 0.558667 | 2.3:+17170835 | MS.gene90146:intron |
| ATCAGTCACATGCGTAGCAA+AGG | 0.558895 | 2.3:+17171052 | MS.gene90146:CDS |
| AATAGGGTAGGTTTCTTCAA+AGG | 0.559609 | 2.3:-17163783 | None:intergenic |
| GTTGCACACATCTTGAAAGA+TGG | 0.559694 | 2.3:+17172515 | MS.gene90146:CDS |
| ATATTCTGTTCCACAAGTTG+AGG | 0.563078 | 2.3:+17168800 | MS.gene90146:CDS |
| GGAATAGAATCCAAGAAAGT+GGG | 0.563834 | 2.3:+17168082 | MS.gene90146:CDS |
| AACTATTACTGCTGATCTGG+AGG | 0.565893 | 2.3:+17165181 | MS.gene90146:CDS |
| GGAGCATTTCCACCCAGTTG+GGG | 0.566321 | 2.3:-17165012 | None:intergenic |
| TCCGGAGGATGATAATGTGT+TGG | 0.568706 | 2.3:+17167108 | MS.gene90146:CDS |
| GATGCTATATTGCTAGATGC+GGG | 0.569791 | 2.3:+17164888 | MS.gene90146:CDS |
| AATGATGCTGATTTATCCGA+TGG | 0.571407 | 2.3:+17172200 | MS.gene90146:CDS |
| TCTGGTAGAAGCTCTTCCCC+AGG | 0.573187 | 2.3:-17171082 | None:intergenic |
| CACATTATCATCCTCCGGAT+AGG | 0.573405 | 2.3:-17167104 | None:intergenic |
| CATCTTGAAAGATGGTAGAT+GGG | 0.575725 | 2.3:+17172523 | MS.gene90146:CDS |
| CCACTTGGTCAAGAAAATGA+AGG | 0.579718 | 2.3:-17169883 | None:intergenic |
| GACTTGGTTACTAGCTCACA+TGG | 0.583662 | 2.3:+17171745 | MS.gene90146:CDS |
| TGTGAAGAAGACGAAGAAGC+CGG | 0.585540 | 2.3:+17163746 | MS.gene90146:CDS |
| GCTGATTTATCCGATGGAGG+AGG | 0.586042 | 2.3:+17172206 | MS.gene90146:CDS |
| CAACTCACTTCCTCCTCCAT+CGG | 0.586340 | 2.3:-17172216 | None:intergenic |
| TAGAATCCAAGAAAGTGGGC+AGG | 0.591771 | 2.3:+17168086 | MS.gene90146:CDS |
| GTAGCAAAGGTCATCAACCT+GGG | 0.592394 | 2.3:+17171065 | MS.gene90146:CDS |
| TGATGCTATATTGCTAGATG+CGG | 0.593007 | 2.3:+17164887 | MS.gene90146:CDS |
| TATTTCTGAATCATCCTCAA+CGG | 0.593804 | 2.3:-17171612 | None:intergenic |
| ACATTGAGAAAGCAACAGAC+TGG | 0.594075 | 2.3:+17172108 | MS.gene90146:CDS |
| AGATGCGGGTGCTGAACGGA+AGG | 0.595022 | 2.3:+17164902 | MS.gene90146:CDS |
| CATGCGCAAATTTGTTATGG+AGG | 0.598160 | 2.3:+17170891 | MS.gene90146:CDS |
| ATGCATCTGTAGGTATTGAT+GGG | 0.598292 | 2.3:+17164625 | MS.gene90146:intron |
| TGCATGTTGAGGTCCACAGT+TGG | 0.598934 | 2.3:-17168443 | None:intergenic |
| ATTTGATCGGAGCAAATCCA+TGG | 0.599005 | 2.3:-17163420 | None:intergenic |
| TTCTCCGGTAATTCCACAGA+AGG | 0.599224 | 2.3:-17164726 | None:intergenic |
| GTAGCATATCAACTTTCGAC+TGG | 0.599715 | 2.3:-17171914 | None:intergenic |
| CTAGTACATACCTCAACTTG+TGG | 0.600269 | 2.3:-17168810 | None:intergenic |
| GAAAGCAGAGAAACTTTCTG+AGG | 0.604681 | 2.3:+17170179 | MS.gene90146:CDS |
| TTTCTTACAACTGCATGTTG+AGG | 0.604843 | 2.3:-17168454 | None:intergenic |
| GCATTTGGGAAGGATTATGT+GGG | 0.605030 | 2.3:+17163684 | MS.gene90146:CDS |
| GTTCCGAGCTTTACAGCGAG+TGG | 0.609506 | 2.3:-17165161 | None:intergenic |
| ACCAAACTTGAAACTCCTTG+CGG | 0.609907 | 2.3:-17169939 | None:intergenic |
| TTCCGAGCTTTACAGCGAGT+GGG | 0.610350 | 2.3:-17165160 | None:intergenic |
| GGCTTCCATTAATCCTCCCA+AGG | 0.611522 | 2.3:+17172571 | MS.gene90146:CDS |
| TAATCAGACTGAAATGACTA+CGG | 0.613034 | 2.3:+17168023 | MS.gene90146:intron |
| AAAGCTCACCGCAGATGTAG+GGG | 0.614534 | 2.3:-17168931 | None:intergenic |
| GAGTAGAAGAGGCAATGACT+TGG | 0.614884 | 2.3:+17171729 | MS.gene90146:CDS |
| AAAGCAGAGAAACTTTCTGA+GGG | 0.617857 | 2.3:+17170180 | MS.gene90146:CDS |
| AATTTACAGCAAACTGACAA+TGG | 0.618284 | 2.3:+17164978 | MS.gene90146:CDS |
| GGAAGGAGCAAGTTGCAGCA+TGG | 0.618325 | 2.3:+17164919 | MS.gene90146:CDS |
| ATTAATCCTCCCAAGGACAT+GGG | 0.630490 | 2.3:+17172578 | MS.gene90146:CDS |
| TGCAAGCTTCTCAGCTCCCG+AGG | 0.630850 | 2.3:+17170345 | MS.gene90146:CDS |
| AAACTGAACTGGATCCCGCA+AGG | 0.633426 | 2.3:+17169924 | MS.gene90146:CDS |
| GAACTCGAGAGAGATTTGAT+CGG | 0.641844 | 2.3:-17163433 | None:intergenic |
| TCGAAAGGCACTGATAGCAT+CGG | 0.644009 | 2.3:+17171965 | MS.gene90146:CDS |
| GGAAGAGCTTCTACCAGATG+GGG | 0.644506 | 2.3:+17171087 | MS.gene90146:CDS |
| TGCAAGCACCCCTACATCTG+CGG | 0.644553 | 2.3:+17168923 | MS.gene90146:CDS |
| GAGCATTTCCACCCAGTTGG+GGG | 0.645122 | 2.3:-17165011 | None:intergenic |
| TTGCATGAAGCAACTAACAA+AGG | 0.649182 | 2.3:+17170043 | MS.gene90146:CDS |
| ATTGATGCTCCCATTTCGAG+AGG | 0.654004 | 2.3:+17171870 | MS.gene90146:CDS |
| TGCATCTGTAGGTATTGATG+GGG | 0.655166 | 2.3:+17164626 | MS.gene90146:intron |
| AGATAGCCCATGTCCTTGGG+AGG | 0.656852 | 2.3:-17172584 | None:intergenic |
| GATGCTGATTTATCCGATGG+AGG | 0.658748 | 2.3:+17172203 | MS.gene90146:CDS |
| GGCTCCTGCTGATCCAACTG+TGG | 0.659783 | 2.3:+17168430 | MS.gene90146:CDS |
| TGAAAATACAGCTTGCATAG+TGG | 0.660206 | 2.3:-17168268 | None:intergenic |
| AAACCTATAGCCAATAGGGT+AGG | 0.661932 | 2.3:-17163795 | None:intergenic |
| TCTAAAGAAGGCATTTGAGG+AGG | 0.662919 | 2.3:+17168409 | MS.gene90146:CDS |
| TTGATGCTCCCATTTCGAGA+GGG | 0.665706 | 2.3:+17171871 | MS.gene90146:CDS |
| ATAGTGACCGCAGTGTGTTG+AGG | 0.668427 | 2.3:-17172492 | None:intergenic |
| TGATGAGGTTGTACGTCCAA+GGG | 0.669779 | 2.3:+17170303 | MS.gene90146:CDS |
| TGATGCAGTAGCATCCATGT+TGG | 0.673342 | 2.3:-17172159 | None:intergenic |
| TCTAGGACGAAACTTGCACA+TGG | 0.681126 | 2.3:+17168762 | MS.gene90146:intron |
| GAAGAGCTTCTACCAGATGG+GGG | 0.686244 | 2.3:+17171088 | MS.gene90146:CDS |
| GCATAGTAGAAAATTCCGGA+TGG | 0.692803 | 2.3:-17169473 | None:intergenic |
| GTGTTGCACAGTACCCGTTG+AGG | 0.709727 | 2.3:+17171598 | MS.gene90146:intron |
| TAGCAAAGGTCATCAACCTG+GGG | 0.714337 | 2.3:+17171066 | MS.gene90146:CDS |
| GCATCTGTAGGTATTGATGG+GGG | 0.718341 | 2.3:+17164627 | MS.gene90146:intron |
| ATGGAGTGATCCTTTGTGGG+AGG | 0.719607 | 2.3:+17165075 | MS.gene90146:CDS |
| ATTGGAACCTCAACACACTG+CGG | 0.742727 | 2.3:+17172485 | MS.gene90146:CDS |
| AGTGTGTTGAGGTTCCAATG+TGG | 0.787141 | 2.3:-17172481 | None:intergenic |
| TTGGTTACTAGCTCACATGG+AGG | 0.794926 | 2.3:+17171748 | MS.gene90146:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 17163422 | 17172628 | 17163422 | ID=MS.gene90146 |
| chr2.3 | mRNA | 17163422 | 17172628 | 17163422 | ID=MS.gene90146.t1;Parent=MS.gene90146 |
| chr2.3 | exon | 17163422 | 17163517 | 17163422 | ID=MS.gene90146.t1.exon1;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17163422 | 17163517 | 17163422 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17163642 | 17163813 | 17163642 | ID=MS.gene90146.t1.exon2;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17163642 | 17163813 | 17163642 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17164637 | 17164749 | 17164637 | ID=MS.gene90146.t1.exon3;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17164637 | 17164749 | 17164637 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17164873 | 17165209 | 17164873 | ID=MS.gene90146.t1.exon4;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17164873 | 17165209 | 17164873 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17167095 | 17167189 | 17167095 | ID=MS.gene90146.t1.exon5;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17167095 | 17167189 | 17167095 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17168030 | 17168163 | 17168030 | ID=MS.gene90146.t1.exon6;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17168030 | 17168163 | 17168030 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17168254 | 17168310 | 17168254 | ID=MS.gene90146.t1.exon7;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17168254 | 17168310 | 17168254 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17168391 | 17168468 | 17168391 | ID=MS.gene90146.t1.exon8;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17168391 | 17168468 | 17168391 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17168767 | 17168821 | 17168767 | ID=MS.gene90146.t1.exon9;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17168767 | 17168821 | 17168767 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17168903 | 17168944 | 17168903 | ID=MS.gene90146.t1.exon10;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17168903 | 17168944 | 17168903 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17169423 | 17169503 | 17169423 | ID=MS.gene90146.t1.exon11;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17169423 | 17169503 | 17169423 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17169866 | 17170064 | 17169866 | ID=MS.gene90146.t1.exon12;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17169866 | 17170064 | 17169866 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17170154 | 17170211 | 17170154 | ID=MS.gene90146.t1.exon13;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17170154 | 17170211 | 17170154 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17170297 | 17170419 | 17170297 | ID=MS.gene90146.t1.exon14;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17170297 | 17170419 | 17170297 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17170849 | 17170937 | 17170849 | ID=MS.gene90146.t1.exon15;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17170849 | 17170937 | 17170849 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17171020 | 17171109 | 17171020 | ID=MS.gene90146.t1.exon16;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17171020 | 17171109 | 17171020 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17171609 | 17171776 | 17171609 | ID=MS.gene90146.t1.exon17;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17171609 | 17171776 | 17171609 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17171868 | 17171986 | 17171868 | ID=MS.gene90146.t1.exon18;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17171868 | 17171986 | 17171868 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17172101 | 17172230 | 17172101 | ID=MS.gene90146.t1.exon19;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17172101 | 17172230 | 17172101 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| chr2.3 | exon | 17172456 | 17172628 | 17172456 | ID=MS.gene90146.t1.exon20;Parent=MS.gene90146.t1 |
| chr2.3 | CDS | 17172456 | 17172628 | 17172456 | ID=cds.MS.gene90146.t1;Parent=MS.gene90146.t1 |
| Gene Sequence |
| Protein sequence |
