Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95486.t1 | XP_003614112.1 | 98.8 | 170 | 2 | 0 | 1 | 170 | 1 | 170 | 3.60E-87 | 330.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95486.t1 | Q9QZH3 | 44.7 | 159 | 73 | 5 | 9 | 167 | 5 | 148 | 1.5e-25 | 117.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95486.t1 | B7FJM0 | 98.8 | 170 | 2 | 0 | 1 | 170 | 1 | 170 | 2.6e-87 | 330.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene95486 | 0.848755 | 5.01E-60 | -1.69E-46 |
| MS.gene049293 | MS.gene95486 | -0.807758 | 4.32E-50 | -1.69E-46 |
| MS.gene049340 | MS.gene95486 | 0.809758 | 1.61E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene95486 | 0.820474 | 6.73E-53 | -1.69E-46 |
| MS.gene049653 | MS.gene95486 | 0.816581 | 5.14E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene95486 | 0.812498 | 4.11E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene95486 | 0.801802 | 7.58E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene95486 | 0.860918 | 1.48E-63 | -1.69E-46 |
| MS.gene050303 | MS.gene95486 | 0.817186 | 3.76E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene95486 | 0.818239 | 2.17E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene95486 | 0.84785 | 8.91E-60 | -1.69E-46 |
| MS.gene051243 | MS.gene95486 | 0.835333 | 1.78E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene95486 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene95486 | 0.833536 | 5.04E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene95486 | 0.809055 | 2.29E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene95486 | 0.810981 | 8.80E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene95486 | 0.801163 | 1.02E-48 | -1.69E-46 |
| MS.gene052286 | MS.gene95486 | 0.850055 | 2.17E-60 | -1.69E-46 |
| MS.gene052302 | MS.gene95486 | 0.813621 | 2.33E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene95486 | 0.8108 | 9.62E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene95486 | 0.818665 | 1.74E-52 | -1.69E-46 |
| MS.gene053080 | MS.gene95486 | 0.80944 | 1.89E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene95486 | 0.804947 | 1.69E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene95486 | 0.812147 | 4.91E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene95486 | 0.800058 | 1.72E-48 | -1.69E-46 |
| MS.gene05517 | MS.gene95486 | 0.803728 | 3.03E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene95486 | 0.812019 | 5.23E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene95486 | 0.827828 | 1.26E-54 | -1.69E-46 |
| MS.gene056091 | MS.gene95486 | 0.801298 | 9.62E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene95486 | 0.841725 | 3.99E-58 | -1.69E-46 |
| MS.gene056760 | MS.gene95486 | 0.816364 | 5.75E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene95486 | 0.805069 | 1.60E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene95486 | 0.830195 | 3.37E-55 | -1.69E-46 |
| MS.gene057079 | MS.gene95486 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene95486 | 0.833749 | 4.46E-56 | -1.69E-46 |
| MS.gene057234 | MS.gene95486 | 0.834651 | 2.65E-56 | -1.69E-46 |
| MS.gene057555 | MS.gene95486 | 0.820081 | 8.28E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene95486 | 0.862334 | 5.46E-64 | -1.69E-46 |
| MS.gene05795 | MS.gene95486 | 0.826672 | 2.39E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene95486 | 0.824145 | 9.46E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene95486 | 0.8536 | 2.15E-61 | -1.69E-46 |
| MS.gene058906 | MS.gene95486 | 0.811505 | 6.77E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene95486 | 0.834903 | 2.29E-56 | -1.69E-46 |
| MS.gene05954 | MS.gene95486 | 0.817983 | 2.48E-52 | -1.69E-46 |
| MS.gene059569 | MS.gene95486 | 0.834439 | 3.00E-56 | -1.69E-46 |
| MS.gene05978 | MS.gene95486 | 0.815415 | 9.35E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene95486 | 0.803886 | 2.81E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene95486 | 0.814288 | 1.66E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene95486 | 0.832211 | 1.08E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene95486 | 0.819967 | 8.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95486.t1 | MTR_5g044970 | 98.824 | 170 | 2 | 0 | 1 | 170 | 1 | 170 | 4.62e-123 | 343 |
| MS.gene95486.t1 | MTR_3g080130 | 45.238 | 84 | 45 | 1 | 10 | 93 | 36 | 118 | 7.39e-16 | 70.5 |
| MS.gene95486.t1 | MTR_7g013740 | 42.667 | 75 | 43 | 0 | 12 | 86 | 42 | 116 | 9.13e-16 | 70.5 |
| MS.gene95486.t1 | MTR_7g013730 | 44.000 | 75 | 42 | 0 | 12 | 86 | 42 | 116 | 3.79e-15 | 70.9 |
| MS.gene95486.t1 | MTR_4g109540 | 36.905 | 84 | 53 | 0 | 3 | 86 | 35 | 118 | 5.45e-14 | 68.2 |
| MS.gene95486.t1 | MTR_3g084040 | 34.884 | 86 | 55 | 1 | 1 | 86 | 27 | 111 | 2.62e-13 | 63.9 |
| MS.gene95486.t1 | MTR_4g109540 | 40.000 | 75 | 45 | 0 | 12 | 86 | 52 | 126 | 2.98e-12 | 63.5 |
| MS.gene95486.t1 | MTR_4g070140 | 42.667 | 75 | 43 | 0 | 12 | 86 | 10 | 84 | 3.12e-12 | 62.0 |
| MS.gene95486.t1 | MTR_1g054675 | 39.785 | 93 | 51 | 1 | 10 | 97 | 43 | 135 | 5.50e-12 | 62.0 |
| MS.gene95486.t1 | MTR_7g105260 | 37.179 | 78 | 49 | 0 | 12 | 89 | 34 | 111 | 1.89e-11 | 58.9 |
| MS.gene95486.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 2.23e-11 | 58.5 |
| MS.gene95486.t1 | MTR_3g025880 | 38.667 | 75 | 46 | 0 | 12 | 86 | 46 | 120 | 2.88e-11 | 61.2 |
| MS.gene95486.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 4.12e-11 | 58.5 |
| MS.gene95486.t1 | MTR_4g070190 | 40.000 | 75 | 45 | 0 | 12 | 86 | 10 | 84 | 4.53e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95486.t1 | AT1G13690 | 82.209 | 163 | 28 | 1 | 9 | 170 | 12 | 174 | 2.88e-98 | 281 |
| MS.gene95486.t1 | AT5G61030 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.13e-16 | 75.9 |
| MS.gene95486.t1 | AT5G61030 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.13e-16 | 75.9 |
| MS.gene95486.t1 | AT3G08000 | 43.373 | 83 | 46 | 1 | 12 | 94 | 43 | 124 | 1.47e-16 | 72.4 |
| MS.gene95486.t1 | AT4G39260 | 42.529 | 87 | 48 | 1 | 12 | 98 | 8 | 92 | 7.28e-15 | 66.6 |
| MS.gene95486.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 1.88e-13 | 63.9 |
| MS.gene95486.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 2.08e-13 | 63.9 |
| MS.gene95486.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.13e-13 | 64.3 |
| MS.gene95486.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.56e-13 | 64.3 |
| MS.gene95486.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.83e-13 | 64.3 |
| MS.gene95486.t1 | AT1G74230 | 38.636 | 88 | 50 | 2 | 2 | 86 | 23 | 109 | 4.77e-13 | 65.9 |
| MS.gene95486.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 5.03e-13 | 63.9 |
| MS.gene95486.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.43e-12 | 62.0 |
| MS.gene95486.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.43e-12 | 62.0 |
| MS.gene95486.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 3.16e-12 | 61.6 |
| MS.gene95486.t1 | AT5G04280 | 38.202 | 89 | 52 | 1 | 1 | 89 | 1 | 86 | 3.99e-12 | 63.2 |
| MS.gene95486.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 4.28e-12 | 61.6 |
| MS.gene95486.t1 | AT4G13860 | 38.889 | 72 | 44 | 0 | 12 | 83 | 5 | 76 | 1.72e-11 | 57.8 |
| MS.gene95486.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.68e-11 | 59.7 |
| MS.gene95486.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.68e-11 | 59.7 |
Find 47 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTTCCTGAAAAGATTA+AGG | 0.186812 | 5.2:+35309237 | MS.gene95486:CDS |
| TTCCGCCGCCATGGATAATA+TGG | 0.365330 | 5.2:+35309174 | MS.gene95486:CDS |
| TTTCTCTCCTTCCCGCTCTT+CGG | 0.397348 | 5.2:-35311153 | None:intergenic |
| CGGAAGCATCTTCCCTTTCA+AGG | 0.410203 | 5.2:-35309156 | None:intergenic |
| GCTCTTCCTGAAAAGATTAA+GGG | 0.410601 | 5.2:+35309238 | MS.gene95486:CDS |
| CAGCTTTATTCTCTGCTTCG+AGG | 0.410867 | 5.2:-35311091 | None:intergenic |
| TTTGGGCGGATGCGGATACT+TGG | 0.419214 | 5.2:+35311033 | MS.gene95486:CDS |
| ACGCAGAAGCATCGTTCCTT+CGG | 0.435942 | 5.2:+35309121 | MS.gene95486:CDS |
| CGTCGGTGGTTTAGCGGAAG+AGG | 0.445488 | 5.2:+35309021 | MS.gene95486:CDS |
| GAAGCAAGTAGCCGAAGAGC+GGG | 0.453125 | 5.2:+35311142 | MS.gene95486:CDS |
| AACGATGCTTCTGCGTTGCT+TGG | 0.454782 | 5.2:-35309114 | None:intergenic |
| CTTCGTGACTTTCCTTGAAA+GGG | 0.466861 | 5.2:+35309144 | MS.gene95486:CDS |
| AGAGAATAAAGCTGCAATGC+TGG | 0.474659 | 5.2:+35311100 | MS.gene95486:CDS |
| GCTTCGTGACTTTCCTTGAA+AGG | 0.478500 | 5.2:+35309143 | MS.gene95486:CDS |
| TCTCTACGTCGGTGGTTTAG+CGG | 0.487229 | 5.2:+35309015 | MS.gene95486:CDS |
| AAGATTAAGGGTGGTGAACA+AGG | 0.491175 | 5.2:+35309250 | MS.gene95486:CDS |
| CATACCCTTCGGAGATATCA+AGG | 0.495043 | 5.2:+35309072 | MS.gene95486:CDS |
| TGAGATCAAAGATGATCCTA+TGG | 0.502753 | 5.2:+35311184 | MS.gene95486:CDS |
| ATGGATGGTGCTGAACTATA+TGG | 0.503881 | 5.2:+35309193 | MS.gene95486:CDS |
| CATGCGGCGTTCATACCCTT+CGG | 0.509469 | 5.2:+35309061 | MS.gene95486:CDS |
| TTCTGCGTTGCTTGGTCAAG+CGG | 0.538224 | 5.2:-35309106 | None:intergenic |
| CAACAATGGCGATGATGCAA+GGG | 0.542406 | 5.2:+35308978 | None:intergenic |
| TTAAGGGTGGTGAACAAGGA+TGG | 0.543887 | 5.2:+35309254 | MS.gene95486:CDS |
| GGAAGATGCTTCCGCCGCCA+TGG | 0.549924 | 5.2:+35309165 | MS.gene95486:CDS |
| GCAACAATGGCGATGATGCA+AGG | 0.550286 | 5.2:+35308977 | None:intergenic |
| CACGTCCTTGATATCTCCGA+AGG | 0.553071 | 5.2:-35309077 | None:intergenic |
| TCTGCTTCAGCCCTTGCCAT+AGG | 0.559803 | 5.2:-35311200 | None:intergenic |
| ATCCATATTATCCATGGCGG+CGG | 0.566198 | 5.2:-35309176 | None:intergenic |
| TAAGGGTGGTGAACAAGGAT+GGG | 0.577061 | 5.2:+35309255 | MS.gene95486:CDS |
| AGCACCATCCATATTATCCA+TGG | 0.577845 | 5.2:-35309182 | None:intergenic |
| AGGGTATGAACGCCGCATGA+AGG | 0.578831 | 5.2:-35309057 | None:intergenic |
| GGAAGCAAGTAGCCGAAGAG+CGG | 0.585397 | 5.2:+35311141 | MS.gene95486:CDS |
| CAAGTAGCCGAAGAGCGGGA+AGG | 0.590737 | 5.2:+35311146 | MS.gene95486:CDS |
| GCCGCCATGGATAATATGGA+TGG | 0.598509 | 5.2:+35309178 | MS.gene95486:CDS |
| TGGCTGCTGAAGAACTGCAC+AGG | 0.598798 | 5.2:+35311120 | MS.gene95486:CDS |
| TGAACGACAGCAACAAGAAG+AGG | 0.599680 | 5.2:+35311058 | MS.gene95486:CDS |
| TATGGCAAGGGCTGAAGCAG+AGG | 0.602950 | 5.2:+35311202 | MS.gene95486:CDS |
| CAAAGATGATCCTATGGCAA+GGG | 0.603906 | 5.2:+35311190 | MS.gene95486:CDS |
| TCAAAGATGATCCTATGGCA+AGG | 0.607783 | 5.2:+35311189 | MS.gene95486:CDS |
| AAGGAAAGTCACGAAGCCGA+AGG | 0.646362 | 5.2:-35309137 | None:intergenic |
| ACGTCCTTGATATCTCCGAA+GGG | 0.665056 | 5.2:-35309076 | None:intergenic |
| AACAATGGCGATGATGCAAG+GGG | 0.670281 | 5.2:+35308979 | None:intergenic |
| CTTCCTGAAAAGATTAAGGG+TGG | 0.671578 | 5.2:+35309241 | MS.gene95486:CDS |
| GAACGAATCAATCCTTCATG+CGG | 0.674079 | 5.2:+35309045 | MS.gene95486:CDS |
| AAGAACACTCTCTACGTCGG+TGG | 0.677653 | 5.2:+35309007 | MS.gene95486:CDS |
| ACCATCCATATTATCCATGG+CGG | 0.687486 | 5.2:-35309179 | None:intergenic |
| CAAAAGAACACTCTCTACGT+CGG | 0.696745 | 5.2:+35309004 | MS.gene95486:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAATTTTGAGAAAATTA+TGG | + | chr5.2:35309666-35309685 | MS.gene95486:intron | 10.0% |
| !!! | TTTATTTTGTTAAATTGATT+CGG | + | chr5.2:35310176-35310195 | MS.gene95486:intron | 10.0% |
| !! | TAATAAATAGCTTATTGTAA+AGG | - | chr5.2:35309763-35309782 | None:intergenic | 15.0% |
| !!! | AAATTGAGTTTGAAATAAAT+AGG | + | chr5.2:35310202-35310221 | MS.gene95486:intron | 15.0% |
| !!! | ATGTAATTAGTTAATTTGTT+AGG | + | chr5.2:35310028-35310047 | MS.gene95486:intron | 15.0% |
| !!! | ATTTTAAATTAAGAACCATA+AGG | - | chr5.2:35309629-35309648 | None:intergenic | 15.0% |
| !!! | GAAAGTGAAAAATTATTTTA+AGG | + | chr5.2:35310398-35310417 | MS.gene95486:intron | 15.0% |
| !!! | TAAGTTGAAAAATTAATACT+AGG | - | chr5.2:35310288-35310307 | None:intergenic | 15.0% |
| !!! | TCATGAAACTTTATTTTATT+GGG | + | chr5.2:35309952-35309971 | MS.gene95486:intron | 15.0% |
| !!! | TGTAATTAGTTAATTTGTTA+GGG | + | chr5.2:35310029-35310048 | MS.gene95486:intron | 15.0% |
| !!! | TTCATGAAACTTTATTTTAT+TGG | + | chr5.2:35309951-35309970 | MS.gene95486:intron | 15.0% |
| !! | AAACTTAGATTCATTTCTTT+AGG | - | chr5.2:35309738-35309757 | None:intergenic | 20.0% |
| !! | AAGAGAATTAAAGATTTACT+TGG | - | chr5.2:35309289-35309308 | None:intergenic | 20.0% |
| !! | ACAACATTATTGCATATTAA+AGG | + | chr5.2:35310502-35310521 | MS.gene95486:intron | 20.0% |
| !! | TGATTATGTGTTTATGTTTA+GGG | + | chr5.2:35309325-35309344 | MS.gene95486:intron | 20.0% |
| !! | TTGATTATGTGTTTATGTTT+AGG | + | chr5.2:35309324-35309343 | MS.gene95486:intron | 20.0% |
| !!! | AAAAAATTACAAGTTTTACC+TGG | + | chr5.2:35310889-35310908 | MS.gene95486:intron | 20.0% |
| !!! | GTAATTAGTTAATTTGTTAG+GGG | + | chr5.2:35310030-35310049 | MS.gene95486:intron | 20.0% |
| !!! | TTTGTTTCAATTTTCAGTTT+GGG | + | chr5.2:35311016-35311035 | MS.gene95486:intron | 20.0% |
| ! | ATATGCAATAATGTTGTCTA+AGG | - | chr5.2:35310499-35310518 | None:intergenic | 25.0% |
| ! | ATCGTTGTTATGAGATAAAA+GGG | + | chr5.2:35309406-35309425 | MS.gene95486:intron | 25.0% |
| ! | TAAAATGATCTCAACTTTCT+TGG | + | chr5.2:35310962-35310981 | MS.gene95486:intron | 25.0% |
| ! | TAATTATCCATCATGAATGA+TGG | - | chr5.2:35310586-35310605 | None:intergenic | 25.0% |
| ! | TAGTTAAGTTAAGAACTACA+TGG | + | chr5.2:35309707-35309726 | MS.gene95486:intron | 25.0% |
| ! | TATCGTTGTTATGAGATAAA+AGG | + | chr5.2:35309405-35309424 | MS.gene95486:intron | 25.0% |
| ! | TTGAGAAAATTATGGATTTG+AGG | + | chr5.2:35309674-35309693 | MS.gene95486:intron | 25.0% |
| !! | ATCAGTTTTACTCCTTTTAA+AGG | + | chr5.2:35310740-35310759 | MS.gene95486:intron | 25.0% |
| !! | GAGTTTGAAATAAATAGGTT+TGG | + | chr5.2:35310207-35310226 | MS.gene95486:intron | 25.0% |
| !! | GTTTGTTTCAATTTTCAGTT+TGG | + | chr5.2:35311015-35311034 | MS.gene95486:intron | 25.0% |
| !! | TAATATGTGTCATTAGTTCA+GGG | + | chr5.2:35309927-35309946 | MS.gene95486:intron | 25.0% |
| !!! | AGGATTGAATTAGGTTTTAT+GGG | + | chr5.2:35309352-35309371 | MS.gene95486:intron | 25.0% |
| !!! | ATTGGTTCTATTTAGTTTGT+AGG | + | chr5.2:35309382-35309401 | MS.gene95486:intron | 25.0% |
| !!! | CTTGATGATTTTATGTTGAA+TGG | + | chr5.2:35309429-35309448 | MS.gene95486:intron | 25.0% |
| !!! | GTTCAATTTTTTCACTTATG+TGG | + | chr5.2:35310984-35311003 | MS.gene95486:intron | 25.0% |
| !!! | GTTTCTAAAGCTATATATGA+AGG | + | chr5.2:35310932-35310951 | MS.gene95486:intron | 25.0% |
| AATTATTCAACTCCATACCT+TGG | - | chr5.2:35310340-35310359 | None:intergenic | 30.0% | |
| ATCAGTATCACTCCTTTAAA+AGG | - | chr5.2:35310755-35310774 | None:intergenic | 30.0% | |
| ATGTATATGCACAATTATGC+TGG | + | chr5.2:35310635-35310654 | MS.gene95486:intron | 30.0% | |
| CAAATAGCAGCTATATCATT+CGG | + | chr5.2:35309793-35309812 | MS.gene95486:intron | 30.0% | |
| GAACTATATCATACAGACAA+TGG | - | chr5.2:35310612-35310631 | None:intergenic | 30.0% | |
| TGTATATGCACAATTATGCT+GGG | + | chr5.2:35310636-35310655 | MS.gene95486:intron | 30.0% | |
| TTAAGAAGCAACCAAAACAT+CGG | - | chr5.2:35310833-35310852 | None:intergenic | 30.0% | |
| TTGTTCATTATTAGGGGAAT+TGG | + | chr5.2:35309891-35309910 | MS.gene95486:intron | 30.0% | |
| TTTGCAATAGGACAAAACTT+AGG | + | chr5.2:35309574-35309593 | MS.gene95486:intron | 30.0% | |
| ! | ACAGCAGTTTGTTCATTATT+AGG | + | chr5.2:35309883-35309902 | MS.gene95486:intron | 30.0% |
| ! | AGCAGTTTGTTCATTATTAG+GGG | + | chr5.2:35309885-35309904 | MS.gene95486:intron | 30.0% |
| ! | ATGTTAGCAGTCAATTTGTT+AGG | + | chr5.2:35309978-35309997 | MS.gene95486:intron | 30.0% |
| ! | CAGCAGTTTGTTCATTATTA+GGG | + | chr5.2:35309884-35309903 | MS.gene95486:intron | 30.0% |
| ! | CTTTTATACGAGAAAAACCA+AGG | + | chr5.2:35310320-35310339 | MS.gene95486:intron | 30.0% |
| ! | GAGGATTGAATTAGGTTTTA+TGG | + | chr5.2:35309351-35309370 | MS.gene95486:intron | 30.0% |
| ! | GTAATATGTGTCATTAGTTC+AGG | + | chr5.2:35309926-35309945 | MS.gene95486:intron | 30.0% |
| ! | TTTTCTCTCAAAGCAAGTAT+GGG | + | chr5.2:35310249-35310268 | MS.gene95486:intron | 30.0% |
| ! | TTTTTCTCTCAAAGCAAGTA+TGG | + | chr5.2:35310248-35310267 | MS.gene95486:intron | 30.0% |
| !! | AAAAAGCATTCAACATAACC+AGG | - | chr5.2:35310683-35310702 | None:intergenic | 30.0% |
| !! | ATATAACTCATTTGGTGTCT+CGG | + | chr5.2:35310098-35310117 | MS.gene95486:intron | 30.0% |
| !! | TAGTTAATTTGTTAGGGGAT+GGG | + | chr5.2:35310035-35310054 | MS.gene95486:intron | 30.0% |
| !! | TCTTTGTTTATCCGATGTTT+TGG | + | chr5.2:35310819-35310838 | MS.gene95486:intron | 30.0% |
| !! | TGTTAGCAGTCAATTTGTTA+GGG | + | chr5.2:35309979-35309998 | MS.gene95486:intron | 30.0% |
| !! | TTAGTTAATTTGTTAGGGGA+TGG | + | chr5.2:35310034-35310053 | MS.gene95486:intron | 30.0% |
| AGCATAATGTGAACAAATCG+CGG | + | chr5.2:35309547-35309566 | MS.gene95486:intron | 35.0% | |
| ATACGAGAAAAACCAAGGTA+TGG | + | chr5.2:35310325-35310344 | MS.gene95486:intron | 35.0% | |
| ATGAGTTATATGCAAGTCCA+AGG | - | chr5.2:35310089-35310108 | None:intergenic | 35.0% | |
| GCTCTTCCTGAAAAGATTAA+GGG | + | chr5.2:35309238-35309257 | MS.gene95486:CDS | 35.0% | |
| GGACTTGCATATAACTCATT+TGG | + | chr5.2:35310090-35310109 | MS.gene95486:intron | 35.0% | |
| TAAGGCATAGTCAATTCTGA+AGG | + | chr5.2:35310416-35310435 | MS.gene95486:intron | 35.0% | |
| TGAGATCAAAGATGATCCTA+TGG | + | chr5.2:35311184-35311203 | MS.gene95486:CDS | 35.0% | |
| TGCTCTTCCTGAAAAGATTA+AGG | + | chr5.2:35309237-35309256 | MS.gene95486:CDS | 35.0% | |
| TTATGGATTTGAGGAGATCA+TGG | + | chr5.2:35309683-35309702 | MS.gene95486:intron | 35.0% | |
| TTTCTCTCAAAGCAAGTATG+GGG | + | chr5.2:35310250-35310269 | MS.gene95486:intron | 35.0% | |
| ! | ATACTGATGAAAGAGCATGA+TGG | + | chr5.2:35310767-35310786 | MS.gene95486:intron | 35.0% |
| ! | GTTTCAATTTTCAGTTTGGG+CGG | + | chr5.2:35311019-35311038 | MS.gene95486:intron | 35.0% |
| !! | GAATTAGGTTTTATGGGTAG+AGG | + | chr5.2:35309358-35309377 | MS.gene95486:intron | 35.0% |
| !! | GTTAGCAGTCAATTTGTTAG+GGG | + | chr5.2:35309980-35309999 | MS.gene95486:intron | 35.0% |
| AAACCATTGGGCTACTCATT+TGG | + | chr5.2:35310124-35310143 | MS.gene95486:intron | 40.0% | |
| AAGATTAAGGGTGGTGAACA+AGG | + | chr5.2:35309250-35309269 | MS.gene95486:CDS | 40.0% | |
| ACCATAAGGAAAAGCAGCTA+AGG | - | chr5.2:35309615-35309634 | None:intergenic | 40.0% | |
| ACCATCCATATTATCCATGG+CGG | - | chr5.2:35309182-35309201 | None:intergenic | 40.0% | |
| AGAGAATAAAGCTGCAATGC+TGG | + | chr5.2:35311100-35311119 | MS.gene95486:CDS | 40.0% | |
| AGCACCATCCATATTATCCA+TGG | - | chr5.2:35309185-35309204 | None:intergenic | 40.0% | |
| AGGACAAAACTTAGGTCATC+AGG | + | chr5.2:35309582-35309601 | MS.gene95486:intron | 40.0% | |
| ATAATGTGAACAAATCGCGG+TGG | + | chr5.2:35309550-35309569 | MS.gene95486:intron | 40.0% | |
| CAAAAGAACACTCTCTACGT+CGG | + | chr5.2:35309004-35309023 | MS.gene95486:CDS | 40.0% | |
| CAAAGATGATCCTATGGCAA+GGG | + | chr5.2:35311190-35311209 | MS.gene95486:CDS | 40.0% | |
| CACATTCTGTCTCTCAACTA+TGG | - | chr5.2:35310793-35310812 | None:intergenic | 40.0% | |
| CATAGTTGAGAGACAGAATG+TGG | + | chr5.2:35310791-35310810 | MS.gene95486:intron | 40.0% | |
| CTTCCTGAAAAGATTAAGGG+TGG | + | chr5.2:35309241-35309260 | MS.gene95486:CDS | 40.0% | |
| CTTCGTGACTTTCCTTGAAA+GGG | + | chr5.2:35309144-35309163 | MS.gene95486:CDS | 40.0% | |
| GAACGAATCAATCCTTCATG+CGG | + | chr5.2:35309045-35309064 | MS.gene95486:CDS | 40.0% | |
| GGAGAAATGTTATTAGCTGC+TGG | + | chr5.2:35310056-35310075 | MS.gene95486:intron | 40.0% | |
| TAGGGCTTGAGGATTGAATT+AGG | + | chr5.2:35309343-35309362 | MS.gene95486:intron | 40.0% | |
| TAGGGGAATTGGTTAGAATG+TGG | + | chr5.2:35309902-35309921 | MS.gene95486:intron | 40.0% | |
| TCAAAGATGATCCTATGGCA+AGG | + | chr5.2:35311189-35311208 | MS.gene95486:CDS | 40.0% | |
| TTTCCAAATGAGTAGCCCAA+TGG | - | chr5.2:35310130-35310149 | None:intergenic | 40.0% | |
| ! | ATGGATGGTGCTGAACTATA+TGG | + | chr5.2:35309193-35309212 | MS.gene95486:CDS | 40.0% |
| ! | GTGTTTATGTTTAGGGCTTG+AGG | + | chr5.2:35309332-35309351 | MS.gene95486:intron | 40.0% |
| ! | TCACCACCCTTAATCTTTTC+AGG | - | chr5.2:35309247-35309266 | None:intergenic | 40.0% |
| !! | AATTGCCAGAGATTAGTCTC+TGG | + | chr5.2:35309499-35309518 | MS.gene95486:intron | 40.0% |
| !! | GAATTTTTCGAATCTCAGCC+AGG | - | chr5.2:35310910-35310929 | None:intergenic | 40.0% |
| !!! | ATGGTGCAGAGGCATTTTAA+GGG | - | chr5.2:35310567-35310586 | None:intergenic | 40.0% |
| !!! | TCCTTAGCTGCTTTTCCTTA+TGG | + | chr5.2:35309611-35309630 | MS.gene95486:intron | 40.0% |
| ACGTCCTTGATATCTCCGAA+GGG | - | chr5.2:35309079-35309098 | None:intergenic | 45.0% | |
| ATCCATATTATCCATGGCGG+CGG | - | chr5.2:35309179-35309198 | None:intergenic | 45.0% | |
| CATACCCTTCGGAGATATCA+AGG | + | chr5.2:35309072-35309091 | MS.gene95486:CDS | 45.0% | |
| CATTGCCAGAGACTAATCTC+TGG | - | chr5.2:35309507-35309526 | None:intergenic | 45.0% | |
| CTCTGCACCATCATTCATGA+TGG | + | chr5.2:35310576-35310595 | MS.gene95486:intron | 45.0% | |
| GCTTCGTGACTTTCCTTGAA+AGG | + | chr5.2:35309143-35309162 | MS.gene95486:CDS | 45.0% | |
| GTGTCTCGGCATAAACCATT+GGG | + | chr5.2:35310112-35310131 | MS.gene95486:intron | 45.0% | |
| TAAGGGTGGTGAACAAGGAT+GGG | + | chr5.2:35309255-35309274 | MS.gene95486:CDS | 45.0% | |
| TAGCTGCTGGAATTGAACCT+TGG | + | chr5.2:35310069-35310088 | MS.gene95486:intron | 45.0% | |
| TGAACGACAGCAACAAGAAG+AGG | + | chr5.2:35311058-35311077 | MS.gene95486:CDS | 45.0% | |
| TTAAGGGTGGTGAACAAGGA+TGG | + | chr5.2:35309254-35309273 | MS.gene95486:CDS | 45.0% | |
| ! | ATTTTCAGTTTGGGCGGATG+CGG | + | chr5.2:35311025-35311044 | MS.gene95486:intron | 45.0% |
| ! | CATCATGAATGATGGTGCAG+AGG | - | chr5.2:35310578-35310597 | None:intergenic | 45.0% |
| !! | AATCGCGGTGGTTTTGCAAT+AGG | + | chr5.2:35309562-35309581 | MS.gene95486:intron | 45.0% |
| !! | CAGCTTTATTCTCTGCTTCG+AGG | - | chr5.2:35311094-35311113 | None:intergenic | 45.0% |
| !! | GAGATTAGTCTCTGGCAATG+TGG | + | chr5.2:35309507-35309526 | MS.gene95486:intron | 45.0% |
| !! | GGTTTTATGGGTAGAGGCAT+TGG | + | chr5.2:35309364-35309383 | MS.gene95486:intron | 45.0% |
| !!! | GATGGTGCAGAGGCATTTTA+AGG | - | chr5.2:35310568-35310587 | None:intergenic | 45.0% |
| AACGATGCTTCTGCGTTGCT+TGG | - | chr5.2:35309117-35309136 | None:intergenic | 50.0% | |
| AAGAACACTCTCTACGTCGG+TGG | + | chr5.2:35309007-35309026 | MS.gene95486:CDS | 50.0% | |
| AAGGAAAGTCACGAAGCCGA+AGG | - | chr5.2:35309140-35309159 | None:intergenic | 50.0% | |
| ATTATGCTGGGACACCGATG+CGG | + | chr5.2:35310648-35310667 | MS.gene95486:intron | 50.0% | |
| CACGTCCTTGATATCTCCGA+AGG | - | chr5.2:35309080-35309099 | None:intergenic | 50.0% | |
| CCAGGATTCTTAAGCCGCAT+CGG | - | chr5.2:35310665-35310684 | None:intergenic | 50.0% | |
| GCCGCCATGGATAATATGGA+TGG | + | chr5.2:35309178-35309197 | MS.gene95486:CDS | 50.0% | |
| GGTGTCTCGGCATAAACCAT+TGG | + | chr5.2:35310111-35310130 | MS.gene95486:intron | 50.0% | |
| TCTCTACGTCGGTGGTTTAG+CGG | + | chr5.2:35309015-35309034 | MS.gene95486:CDS | 50.0% | |
| TTCCGCCGCCATGGATAATA+TGG | + | chr5.2:35309174-35309193 | MS.gene95486:CDS | 50.0% | |
| TTCTGCGTTGCTTGGTCAAG+CGG | - | chr5.2:35309109-35309128 | None:intergenic | 50.0% | |
| TTTCTCTCCTTCCCGCTCTT+CGG | - | chr5.2:35311156-35311175 | None:intergenic | 50.0% | |
| !! | ACGCAGAAGCATCGTTCCTT+CGG | + | chr5.2:35309121-35309140 | MS.gene95486:CDS | 50.0% |
| !! | CGGAAGCATCTTCCCTTTCA+AGG | - | chr5.2:35309159-35309178 | None:intergenic | 50.0% |
| AGGGTATGAACGCCGCATGA+AGG | - | chr5.2:35309060-35309079 | None:intergenic | 55.0% | |
| CATGCGGCGTTCATACCCTT+CGG | + | chr5.2:35309061-35309080 | MS.gene95486:CDS | 55.0% | |
| CCGATGCGGCTTAAGAATCC+TGG | + | chr5.2:35310662-35310681 | MS.gene95486:intron | 55.0% | |
| GAAGCAAGTAGCCGAAGAGC+GGG | + | chr5.2:35311142-35311161 | MS.gene95486:CDS | 55.0% | |
| GGAAGCAAGTAGCCGAAGAG+CGG | + | chr5.2:35311141-35311160 | MS.gene95486:CDS | 55.0% | |
| TATGGCAAGGGCTGAAGCAG+AGG | + | chr5.2:35311202-35311221 | MS.gene95486:CDS | 55.0% | |
| TCTGCTTCAGCCCTTGCCAT+AGG | - | chr5.2:35311203-35311222 | None:intergenic | 55.0% | |
| TGGCTGCTGAAGAACTGCAC+AGG | + | chr5.2:35311120-35311139 | MS.gene95486:CDS | 55.0% | |
| TTTGGGCGGATGCGGATACT+TGG | + | chr5.2:35311033-35311052 | MS.gene95486:CDS | 55.0% | |
| CAAGTAGCCGAAGAGCGGGA+AGG | + | chr5.2:35311146-35311165 | MS.gene95486:CDS | 60.0% | |
| CGTCGGTGGTTTAGCGGAAG+AGG | + | chr5.2:35309021-35309040 | MS.gene95486:CDS | 60.0% | |
| GGAAGATGCTTCCGCCGCCA+TGG | + | chr5.2:35309165-35309184 | MS.gene95486:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 35308983 | 35311238 | 35308983 | ID=MS.gene95486 |
| chr5.2 | mRNA | 35308983 | 35311238 | 35308983 | ID=MS.gene95486.t1;Parent=MS.gene95486 |
| chr5.2 | exon | 35308983 | 35309289 | 35308983 | ID=MS.gene95486.t1.exon1;Parent=MS.gene95486.t1 |
| chr5.2 | CDS | 35308983 | 35309289 | 35308983 | ID=cds.MS.gene95486.t1;Parent=MS.gene95486.t1 |
| chr5.2 | exon | 35311033 | 35311238 | 35311033 | ID=MS.gene95486.t1.exon2;Parent=MS.gene95486.t1 |
| chr5.2 | CDS | 35311033 | 35311238 | 35311033 | ID=cds.MS.gene95486.t1;Parent=MS.gene95486.t1 |
| Gene Sequence |
| Protein sequence |
