AlfalfaGEDB | MS.gene96511

M. sativa cultivar XinJiangDaYe / MS.gene96511

KEGG: K02262
GO: GO:0003674 GO:0003824 GO:0004129 GO:0005215 GO:0005575 GO:0006091 GO:0008150 GO:0008152 GO:0008324 GO:0009055 GO:0009987 GO:0015002 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0016020 GO:0016491 GO:0016675 GO:0016676 GO:0022857 GO:0022890 GO:0022900 GO:0022904 GO:0044237 GO:0055114 GO:0110165
PFAM: PF00510.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96511.t1	AMC32845.1	100	265	0	0	1	265	1	265	1.70E-152	548.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96511.t1	Q03227	98.1	265	5	0	1	265	1	265	2.1e-151	536.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96511.t1	A0A120IH45	100.0	265	0	0	1	265	1	265	1.2e-152	548.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene96511	-0.805207	1.49E-49	-1.69E-46
MS.gene049254	MS.gene96511	-0.829191	5.91E-55	-1.69E-46
MS.gene049404	MS.gene96511	-0.832737	7.97E-56	-1.69E-46
MS.gene049435	MS.gene96511	-0.809951	1.47E-50	-1.69E-46
MS.gene050073	MS.gene96511	-0.802354	5.84E-49	-1.69E-46
MS.gene050273	MS.gene96511	-0.802133	6.48E-49	-1.69E-46
MS.gene050442	MS.gene96511	-0.818824	1.60E-52	-1.69E-46
MS.gene050559	MS.gene96511	-0.808681	2.75E-50	-1.69E-46
MS.gene050561	MS.gene96511	-0.804505	2.09E-49	-1.69E-46
MS.gene050759	MS.gene96511	-0.817032	4.07E-52	-1.69E-46
MS.gene050807	MS.gene96511	-0.835821	1.34E-56	-1.69E-46
MS.gene050962	MS.gene96511	-0.80546	1.32E-49	-1.69E-46
MS.gene051198	MS.gene96511	-0.813715	2.22E-51	-1.69E-46
MS.gene051279	MS.gene96511	-0.826918	2.08E-54	-1.69E-46
MS.gene051574	MS.gene96511	-0.821035	5.00E-53	-1.69E-46
MS.gene051744	MS.gene96511	-0.824853	6.45E-54	-1.69E-46
MS.gene052108	MS.gene96511	-0.80137	9.30E-49	-1.69E-46
MS.gene05215	MS.gene96511	-0.813936	1.99E-51	-1.69E-46
MS.gene052582	MS.gene96511	-0.832876	7.36E-56	-1.69E-46
MS.gene052584	MS.gene96511	-0.831399	1.71E-55	-1.69E-46
MS.gene052665	MS.gene96511	-0.805823	1.11E-49	-1.69E-46
MS.gene053166	MS.gene96511	-0.821597	3.71E-53	-1.69E-46
MS.gene053226	MS.gene96511	-0.833628	4.78E-56	-1.69E-46
MS.gene053931	MS.gene96511	-0.823366	1.44E-53	-1.69E-46
MS.gene05415	MS.gene96511	-0.802261	6.10E-49	-1.69E-46
MS.gene054576	MS.gene96511	-0.824694	7.03E-54	-1.69E-46
MS.gene054651	MS.gene96511	-0.818038	2.41E-52	-1.69E-46
MS.gene054657	MS.gene96511	-0.818366	2.04E-52	-1.69E-46
MS.gene055222	MS.gene96511	-0.801548	8.55E-49	-1.69E-46
MS.gene055227	MS.gene96511	-0.814236	1.71E-51	-1.69E-46
MS.gene055228	MS.gene96511	-0.803008	4.28E-49	-1.69E-46
MS.gene055841	MS.gene96511	-0.822076	2.87E-53	-1.69E-46
MS.gene05604	MS.gene96511	-0.824473	7.92E-54	-1.69E-46
MS.gene056050	MS.gene96511	-0.81275	3.62E-51	-1.69E-46
MS.gene056173	MS.gene96511	-0.803931	2.75E-49	-1.69E-46
MS.gene056174	MS.gene96511	-0.800536	1.38E-48	-1.69E-46
MS.gene056366	MS.gene96511	-0.815843	7.51E-52	-1.69E-46
MS.gene056506	MS.gene96511	-0.805496	1.30E-49	-1.69E-46
MS.gene057034	MS.gene96511	-0.801154	1.03E-48	-1.69E-46
MS.gene057060	MS.gene96511	-0.805037	1.62E-49	-1.69E-46
MS.gene057208	MS.gene96511	-0.827	1.99E-54	-1.69E-46
MS.gene057444	MS.gene96511	-0.824088	9.76E-54	-1.69E-46
MS.gene057693	MS.gene96511	-0.813756	2.18E-51	-1.69E-46
MS.gene057869	MS.gene96511	-0.819485	1.13E-52	-1.69E-46
MS.gene05847	MS.gene96511	-0.800289	1.55E-48	-1.69E-46
MS.gene058548	MS.gene96511	-0.812163	4.87E-51	-1.69E-46
MS.gene060137	MS.gene96511	0.820422	6.92E-53	-1.69E-46
MS.gene060310	MS.gene96511	-0.815312	9.86E-52	-1.69E-46
MS.gene060365	MS.gene96511	-0.809646	1.71E-50	-1.69E-46
MS.gene060803	MS.gene96511	-0.800479	1.41E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96511.t1	MTR_0082s0160	99.206	252	2	0	1	252	1	252	0.0	503
MS.gene96511.t1	MTR_6g032895	97.653	213	5	0	1	213	1	213	6.63e-149	416
MS.gene96511.t1	MTR_0495s0020	91.379	116	5	1	98	213	15	125	1.07e-68	208

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96511.t1	ATMG00735	95.094	265	13	0	1	265	1	265	1.86e-174	481
MS.gene96511.t1	AT2G07687	95.094	265	13	0	1	265	1	265	1.86e-174	481

Find 0 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGGTATATAGGATAAATATT+AGG	-	6898:4287-4306	None:intergenic	20.0%
!	ACTATTTCGGATAGTATTTA+TGG	+	6898:4705-4724	MS.gene96511:CDS	25.0%
!!!	TGTTCCTTTTTGCTTTTTTT+CGG	+	6898:4421-4440	MS.gene96511:CDS	25.0%
	AATACTATCCGAAATAGTGA+AGG	-	6898:4703-4722	None:intergenic	30.0%
	ACCAATAGATAGAGACAAAT+GGG	-	6898:4902-4921	None:intergenic	30.0%
	ACCATACAAACATGGTATAT+AGG	-	6898:4299-4318	None:intergenic	30.0%
	ATACTATCCGAAATAGTGAA+GGG	-	6898:4702-4721	None:intergenic	30.0%
	ATTTGTCTCTATCTATTGGT+GGG	+	6898:4902-4921	MS.gene96511:CDS	30.0%
	CATACCAAAGTAGTACAATT+AGG	+	6898:4357-4376	MS.gene96511:CDS	30.0%
	TATATACCATGTTTGTATGG+TGG	+	6898:4298-4317	MS.gene96511:CDS	30.0%
	TCCTATATACCATGTTTGTA+TGG	+	6898:4295-4314	MS.gene96511:CDS	30.0%
!	CATGGTTTTCATGTGATTAT+AGG	+	6898:4756-4775	MS.gene96511:CDS	30.0%
!!	AGAATAGGGGTATTAAGAAA+TGG	-	6898:4537-4556	None:intergenic	30.0%
!!	GAATAGGGGTATTAAGAAAT+GGG	-	6898:4536-4555	None:intergenic	30.0%
!!!	GTTCCTTTTTGCTTTTTTTC+GGG	+	6898:4422-4441	MS.gene96511:CDS	30.0%
	AAAGCCAGTTGCTAAGAAAA+AGG	-	6898:4736-4755	None:intergenic	35.0%
	AAGCCCGAAAAAAAGCAAAA+AGG	-	6898:4428-4447	None:intergenic	35.0%
	AGGTCCTAATTGTACTACTT+TGG	-	6898:4364-4383	None:intergenic	35.0%
	ATGTACATGCACTCATTTCA+AGG	+	6898:4237-4256	MS.gene96511:CDS	35.0%
	CACCAATAGATAGAGACAAA+TGG	-	6898:4903-4922	None:intergenic	35.0%
	CATTTGTCTCTATCTATTGG+TGG	+	6898:4901-4920	MS.gene96511:CDS	35.0%
	TCCCATTTGTCTCTATCTAT+TGG	+	6898:4898-4917	MS.gene96511:CDS	35.0%
	TGTACATGCACTCATTTCAA+GGG	+	6898:4238-4257	MS.gene96511:CDS	35.0%
	TTCTATTCCGTTCATCGTAT+CGG	+	6898:4392-4411	MS.gene96511:CDS	35.0%
	TTTGTCTCTATCTATTGGTG+GGG	+	6898:4903-4922	MS.gene96511:CDS	35.0%
!	ACTCTTTTCTTGATCGTATG+TGG	+	6898:4780-4799	MS.gene96511:CDS	35.0%
!	CTAAAACCCAAATCCCTTTT+GGG	-	6898:4500-4519	None:intergenic	35.0%
!	TAAAACCCAAATCCCTTTTG+GGG	-	6898:4499-4518	None:intergenic	35.0%
!	TCTACCTTTTTCTTAGCAAC+TGG	+	6898:4729-4748	MS.gene96511:CDS	35.0%
!!	TCAGAGGCATTCTTATCATT+TGG	+	6898:4149-4168	MS.gene96511:CDS	35.0%
!!	TCTAAAACCCAAATCCCTTT+TGG	-	6898:4501-4520	None:intergenic	35.0%
	AACGGAATAGAACCATATCG+AGG	-	6898:4384-4403	None:intergenic	40.0%
	ATAACCTCCGATACGATGAA+CGG	-	6898:4402-4421	None:intergenic	40.0%
	ATATCTTGGTCATCTGACCA+AGG	+	6898:4812-4831	MS.gene96511:CDS	40.0%
	ATTTGGTAGATCCAAGTCCA+TGG	+	6898:4166-4185	MS.gene96511:CDS	40.0%
	GAATACTAGAGCCAGTGAAA+CGG	-	6898:4646-4665	None:intergenic	40.0%
	GGCTTCTTCTCATTCTTCTT+TGG	+	6898:4443-4462	MS.gene96511:CDS	40.0%
	GTACAATTAGGACCTCGATA+TGG	+	6898:4369-4388	MS.gene96511:CDS	40.0%
	GTACATGCACTCATTTCAAG+GGG	+	6898:4239-4258	MS.gene96511:CDS	40.0%
	TACATGCACTCATTTCAAGG+GGG	+	6898:4240-4259	MS.gene96511:CDS	40.0%
	TCAAGCACCCTTCACTATTT+CGG	+	6898:4692-4711	MS.gene96511:CDS	40.0%
	TCATTCTTCTTTGGCACCTA+CGG	+	6898:4452-4471	MS.gene96511:CDS	40.0%
	TGGTCAGATGACCAAGATAT+TGG	-	6898:4812-4831	None:intergenic	40.0%
	TGTGGTATTCGCCAATATCT+TGG	+	6898:4798-4817	MS.gene96511:CDS	40.0%
	TTAAGAAATGGGATTTCCCG+AGG	-	6898:4525-4544	None:intergenic	40.0%
	TTTAGTAGCAACCGTTTCAC+TGG	+	6898:4632-4651	MS.gene96511:CDS	40.0%
!	AAAACCCAAATCCCTTTTGG+GGG	-	6898:4498-4517	None:intergenic	40.0%
!!	ATTCACTGGCTTTCAAGGAA+TGG	+	6898:4662-4681	MS.gene96511:CDS	40.0%
!!	CTAGTATTCACTGGCTTTCA+AGG	+	6898:4657-4676	MS.gene96511:CDS	40.0%
!!	TTCTTAGCAACTGGCTTTCA+TGG	+	6898:4738-4757	MS.gene96511:CDS	40.0%
!!!	GATTTGGGTTTTAGATCCTC+GGG	+	6898:4506-4525	MS.gene96511:CDS	40.0%
!!!	GGATTTGGGTTTTAGATCCT+CGG	+	6898:4505-4524	MS.gene96511:CDS	40.0%
	ACCCCTATTCTCCTTTCATC+CGG	+	6898:4546-4565	MS.gene96511:CDS	45.0%
	AGCATGATGAGCCCAAGTTA+CGG	-	6898:4577-4596	None:intergenic	45.0%
	CATGTACATCACACCTCCTA+CGG	-	6898:4226-4245	None:intergenic	45.0%
	CTCCGGATGAAAGGAGAATA+GGG	-	6898:4551-4570	None:intergenic	45.0%
	GGTGCAACACTTCTCAGTTT+GGG	+	6898:4261-4280	MS.gene96511:CDS	45.0%
	TATTCCGTTCATCGTATCGG+AGG	+	6898:4395-4414	MS.gene96511:CDS	45.0%
	TCCAAGTCCATGGCCTATTT+CGG	+	6898:4176-4195	MS.gene96511:CDS	45.0%
	TCCGGATGAAAGGAGAATAG+GGG	-	6898:4550-4569	None:intergenic	45.0%
	TGTTCTACGTGAATCCACGT+TGG	+	6898:4326-4345	MS.gene96511:CDS	45.0%
!	GGCATTTTGTAGACGTGGTT+CGG	+	6898:4871-4890	MS.gene96511:CDS	45.0%
!!	GTACTGGCATTTTGTAGACG+TGG	+	6898:4866-4885	MS.gene96511:CDS	45.0%
!!	TCACTGGCTCTAGTATTCAC+TGG	+	6898:4648-4667	MS.gene96511:CDS	45.0%
	AAAGCCAACGTGATGCTCCT+TGG	-	6898:4832-4851	None:intergenic	50.0%
	AGTGAACCCGAAATAGGCCA+TGG	-	6898:4186-4205	None:intergenic	50.0%
	ATCGCGCCACCATACAAACA+TGG	-	6898:4307-4326	None:intergenic	50.0%
	CCAAGTCCATGGCCTATTTC+GGG	+	6898:4177-4196	MS.gene96511:CDS	50.0%
	CTACGTGAATCCACGTTGGA+AGG	+	6898:4330-4349	MS.gene96511:CDS	50.0%
	CTCATCATGCTATACTCGCG+GGG	+	6898:4586-4605	MS.gene96511:CDS	50.0%
	GCTCATCATGCTATACTCGC+GGG	+	6898:4585-4604	MS.gene96511:CDS	50.0%
	GCTCCGGATGAAAGGAGAAT+AGG	-	6898:4552-4571	None:intergenic	50.0%
	GGCTCATCATGCTATACTCG+CGG	+	6898:4584-4603	MS.gene96511:CDS	50.0%
	GGGTGCAACACTTCTCAGTT+TGG	+	6898:4260-4279	MS.gene96511:CDS	50.0%
	GGTATGATGTCCTTCCAACG+TGG	-	6898:4343-4362	None:intergenic	50.0%
	GTCTCTATCTATTGGTGGGG+AGG	+	6898:4906-4925	MS.gene96511:CDS	50.0%
	TTGAAGCAGCTGCATGGTAC+TGG	+	6898:4850-4869	MS.gene96511:CDS	50.0%
	TTGGCACCTACGGTAGAGAT+CGG	+	6898:4462-4481	MS.gene96511:CDS	50.0%
	TTGGCCCCCAAAAGGGATTT+GGG	+	6898:4491-4510	MS.gene96511:CDS	50.0%
	TTTGGCCCCCAAAAGGGATT+TGG	+	6898:4490-4509	MS.gene96511:CDS	50.0%
!!	TGGCCTATTTCGGGTTCACT+CGG	+	6898:4186-4205	MS.gene96511:CDS	50.0%
!!	TTGGCTTTGAAGCAGCTGCA+TGG	+	6898:4844-4863	MS.gene96511:CDS	50.0%
	ATACCCCCGATCTCTACCGT+AGG	-	6898:4471-4490	None:intergenic	55.0%
	ATCCGGAGCAGCCGTAACTT+GGG	+	6898:4563-4582	MS.gene96511:CDS	55.0%
	CCCGAAATAGGCCATGGACT+TGG	-	6898:4180-4199	None:intergenic	55.0%
	GCTCCGAGTGAACCCGAAAT+AGG	-	6898:4192-4211	None:intergenic	55.0%
	GTACATCACACCTCCTACGG+TGG	-	6898:4223-4242	None:intergenic	55.0%
	TCATGCTATACTCGCGGGGA+AGG	+	6898:4590-4609	MS.gene96511:CDS	55.0%
	TGGCACCTACGGTAGAGATC+GGG	+	6898:4463-4482	MS.gene96511:CDS	55.0%
	TTACGGCTGCTCCGGATGAA+AGG	-	6898:4560-4579	None:intergenic	55.0%
!	GGGGTATTTGGCCCCCAAAA+GGG	+	6898:4484-4503	MS.gene96511:CDS	55.0%
!	TTCGGGTTCACTCGGAGCTT+TGG	+	6898:4194-4213	MS.gene96511:CDS	55.0%
!!	CGGTAGAGATCGGGGGTATT+TGG	+	6898:4472-4491	MS.gene96511:CDS	55.0%
!!	CTGACCAAGGAGCATCACGT+TGG	+	6898:4825-4844	MS.gene96511:CDS	55.0%
	AGCCCAAGTTACGGCTGCTC+CGG	-	6898:4568-4587	None:intergenic	60.0%
	CATCCGGAGCAGCCGTAACT+TGG	+	6898:4562-4581	MS.gene96511:CDS	60.0%
	GCACCTACGGTAGAGATCGG+GGG	+	6898:4465-4484	MS.gene96511:CDS	60.0%
	GCTTTGGCAACCACCGTAGG+AGG	+	6898:4210-4229	MS.gene96511:CDS	60.0%
	GGCACCTACGGTAGAGATCG+GGG	+	6898:4464-4483	MS.gene96511:CDS	60.0%
!	GGAGCTTTGGCAACCACCGT+AGG	+	6898:4207-4226	MS.gene96511:CDS	60.0%
!!	GGGGGTATTTGGCCCCCAAA+AGG	+	6898:4483-4502	MS.gene96511:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
6898	gene	4138	4935	4138	ID=MS.gene96511
6898	mRNA	4138	4935	4138	ID=MS.gene96511.t1;Parent=MS.gene96511
6898	exon	4138	4935	4138	ID=MS.gene96511.t1.exon1;Parent=MS.gene96511.t1
6898	CDS	4138	4935	4138	ID=cds.MS.gene96511.t1;Parent=MS.gene96511.t1

Gene Sequence

>MS.gene96511

ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCGGGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACTCATTTCAAGGGGGTGCAACACTTCTCAGTTTGGGCCTAATATTTATCCTATATACCATGTTTGTATGGTGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTAGTACAATTAGGACCTCGATATGGTTCTATTCCGTTCATCGTATCGGAGGTTATGTTCCTTTTTGCTTTTTTTCGGGCTTCTTCTCATTCTTCTTTGGCACCTACGGTAGAGATCGGGGGTATTTGGCCCCCAAAAGGGATTTGGGTTTTAGATCCTCGGGAAATCCCATTTCTTAATACCCCTATTCTCCTTTCATCCGGAGCAGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCAGTTTACGCTTTAGTAGCAACCGTTTCACTGGCTCTAGTATTCACTGGCTTTCAAGGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTTTTCTTAGCAACTGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATCGTATGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACGTGGTTCGGTTATTCCCATTTGTCTCTATCTATTGGTGGGGAGGTATATGA

Protein sequence

>MS.gene96511.t1

MIESQRHSYHLVDPSPWPISGSLGALATTVGGVMYMHSFQGGATLLSLGLIFILYTMFVWWRDVLRESTLEGHHTKVVQLGPRYGSIPFIVSEVMFLFAFFRASSHSSLAPTVEIGGIWPPKGIWVLDPREIPFLNTPILLSSGAAVTWAHHAILAGKEKRAVYALVATVSLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFPFVSIYWWGGI