Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98273.t1 | XP_013460946.1 | 96.5 | 482 | 16 | 1 | 1 | 482 | 1 | 481 | 2.40E-269 | 937.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98273.t1 | P73245 | 38.2 | 422 | 242 | 5 | 48 | 469 | 7 | 409 | 6.6e-79 | 296.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98273.t1 | A0A072V9X5 | 96.5 | 482 | 16 | 1 | 1 | 482 | 1 | 481 | 1.7e-269 | 937.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene98273 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene98273 | 0.816007 | 6.90E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene98273 | 0.835508 | 1.61E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene98273 | 0.83719 | 6.02E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene98273 | 0.826166 | 3.15E-54 | -1.69E-46 |
| MS.gene049627 | MS.gene98273 | 0.815622 | 8.41E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene98273 | 0.837216 | 5.92E-57 | -1.69E-46 |
| MS.gene050165 | MS.gene98273 | 0.827848 | 1.25E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene98273 | 0.819484 | 1.13E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene98273 | 0.816493 | 5.38E-52 | -1.69E-46 |
| MS.gene050538 | MS.gene98273 | 0.818578 | 1.82E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene98273 | 0.832074 | 1.16E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene98273 | 0.807652 | 4.55E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene98273 | 0.83051 | 2.82E-55 | -1.69E-46 |
| MS.gene05100 | MS.gene98273 | 0.815818 | 7.61E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene98273 | 0.807721 | 4.40E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene98273 | 0.81054 | 1.10E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene98273 | 0.810787 | 9.69E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene98273 | 0.808333 | 3.26E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene98273 | 0.811892 | 5.58E-51 | -1.69E-46 |
| MS.gene052605 | MS.gene98273 | 0.964953 | 5.57E-124 | -1.69E-46 |
| MS.gene052670 | MS.gene98273 | 0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene98273 | 0.801125 | 1.04E-48 | -1.69E-46 |
| MS.gene053207 | MS.gene98273 | 0.813526 | 2.45E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene98273 | 0.820323 | 7.29E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene98273 | 0.812008 | 5.26E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene98273 | 0.82567 | 4.13E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene98273 | 0.810747 | 9.89E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene98273 | 0.807852 | 4.13E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene98273 | 0.814801 | 1.28E-51 | -1.69E-46 |
| MS.gene054927 | MS.gene98273 | 0.800523 | 1.39E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene98273 | 0.804182 | 2.44E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene98273 | 0.831145 | 1.97E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene98273 | 0.813233 | 2.84E-51 | -1.69E-46 |
| MS.gene056083 | MS.gene98273 | 0.810756 | 9.84E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene98273 | 0.806534 | 7.85E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene98273 | 0.817007 | 4.12E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene98273 | 0.825105 | 5.62E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene98273 | 0.817294 | 3.55E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene98273 | 0.8086 | 2.86E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene98273 | 0.8061 | 9.69E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene98273 | 0.816022 | 6.85E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene98273 | 0.818091 | 2.35E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene98273 | 0.838639 | 2.55E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene98273 | 0.82508 | 5.70E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene98273 | 0.819565 | 1.09E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene98273 | 0.840982 | 6.26E-58 | -1.69E-46 |
| MS.gene059756 | MS.gene98273 | 0.800488 | 1.41E-48 | -1.69E-46 |
| MS.gene059801 | MS.gene98273 | 0.807645 | 4.57E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene98273 | 0.842792 | 2.08E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene98273 | 0.82079 | 5.69E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene98273 | 0.802875 | 4.56E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98273.t1 | MTR_3g075110 | 96.473 | 482 | 16 | 1 | 1 | 482 | 1 | 481 | 0.0 | 971 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98273.t1 | AT5G63290 | 59.016 | 488 | 174 | 6 | 1 | 468 | 1 | 482 | 0.0 | 605 |
Find 115 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACAAGGCACAAAATT+TGG | 0.144991 | 3.1:+61663803 | MS.gene98273:CDS |
| GAGACATTGAAGATGAAATT+TGG | 0.164347 | 3.1:+61663455 | MS.gene98273:CDS |
| TCTGGGAGTTCAAGCGTTTC+AGG | 0.165044 | 3.1:+61663577 | MS.gene98273:CDS |
| CATGTACTCATTCACCTTCC+TGG | 0.233439 | 3.1:-61664389 | None:intergenic |
| CGACATCAACAATTCTCTTT+TGG | 0.234544 | 3.1:+61664657 | MS.gene98273:CDS |
| GATTTCATAATGGTTATAAT+TGG | 0.235080 | 3.1:-61664245 | None:intergenic |
| CTATTAACTCATTTGATAAA+AGG | 0.246147 | 3.1:-61664738 | None:intergenic |
| GAGTTAATAGCCCTTGCTTT+TGG | 0.270052 | 3.1:+61664751 | MS.gene98273:CDS |
| ATTAGGCGGGTTGATGGTTT+TGG | 0.273462 | 3.1:-61663095 | None:intergenic |
| CATGAAATTCGTGGAAAATC+TGG | 0.286286 | 3.1:+61664408 | MS.gene98273:CDS |
| AAGTATGGTTGGAACGGTTT+TGG | 0.291180 | 3.1:+61663433 | MS.gene98273:CDS |
| AGACATTGAAGATGAAATTT+GGG | 0.331218 | 3.1:+61663456 | MS.gene98273:CDS |
| CAGCTCTCTGGTTCTCTCTC+TGG | 0.344115 | 3.1:+61664558 | MS.gene98273:CDS |
| AAATGTGGGAGGAAAGTTTA+AGG | 0.354228 | 3.1:+61663732 | MS.gene98273:CDS |
| TACAAGCCTTTCTATGCCTT+TGG | 0.354998 | 3.1:+61664322 | MS.gene98273:CDS |
| GGGAGTGAATAGAGTTTCTC+TGG | 0.355835 | 3.1:+61663559 | MS.gene98273:CDS |
| TTCGTGGAAAATCTGGAAAA+TGG | 0.365028 | 3.1:+61664415 | MS.gene98273:CDS |
| TTTGATAAAAGGAAACCATT+TGG | 0.367470 | 3.1:-61664727 | None:intergenic |
| GAGAGCTGCCAAATGATTCT+TGG | 0.367558 | 3.1:-61664543 | None:intergenic |
| GTCCCTGGTTCCTCCAAGTA+TGG | 0.370338 | 3.1:+61663418 | MS.gene98273:CDS |
| TGGAGGTGGGACGCCGTCCC+TGG | 0.373141 | 3.1:+61663403 | MS.gene98273:CDS |
| TTTGTTATTAGGCGGGTTGA+TGG | 0.377434 | 3.1:-61663101 | None:intergenic |
| GTAGACACAACTTTACCTAT+TGG | 0.377880 | 3.1:+61664296 | MS.gene98273:CDS |
| CCTTTCTATGCCTTTGGCCT+CGG | 0.379342 | 3.1:+61664328 | MS.gene98273:CDS |
| AAAAGTGTGGGGTTGAGAAT+TGG | 0.383894 | 3.1:+61663669 | MS.gene98273:CDS |
| TTGGGGTTATTGACTCTTGG+AGG | 0.401602 | 3.1:+61664770 | MS.gene98273:CDS |
| ATGTACTCATTCACCTTCCT+GGG | 0.403580 | 3.1:-61664388 | None:intergenic |
| AGAAGTTGTTGAAGAGTTGT+GGG | 0.410136 | 3.1:+61663600 | MS.gene98273:CDS |
| AGTAGCTGCTGATTTCATAA+TGG | 0.410732 | 3.1:-61664255 | None:intergenic |
| TGCTGAAATTTCGATGGAAA+TGG | 0.412741 | 3.1:+61663490 | MS.gene98273:CDS |
| TACGTTTGATTGTAAGAAGA+TGG | 0.413518 | 3.1:+61663520 | MS.gene98273:CDS |
| TTGTGGGAGGGCACATGGTT+TGG | 0.414910 | 3.1:+61663616 | MS.gene98273:CDS |
| AAGCGTTACCAAGAATCATT+TGG | 0.417084 | 3.1:+61664535 | MS.gene98273:CDS |
| TCTGGTTCTCTCTCTGGTTG+AGG | 0.422048 | 3.1:+61664564 | MS.gene98273:CDS |
| CTGAAGAAGGGGTGATGGTT+GGG | 0.425240 | 3.1:-61663181 | None:intergenic |
| TGGATCACTTAGCCTCATAT+AGG | 0.428653 | 3.1:-61664707 | None:intergenic |
| GAGAAGTTGTTGAAGAGTTG+TGG | 0.438707 | 3.1:+61663599 | MS.gene98273:CDS |
| GAAAGGCTTGTACTTCCAAT+AGG | 0.443597 | 3.1:-61664311 | None:intergenic |
| AAAACCGTTCCAACCATACT+TGG | 0.446657 | 3.1:-61663431 | None:intergenic |
| AGAATCATTTGGCAGCTCTC+TGG | 0.455230 | 3.1:+61664546 | MS.gene98273:CDS |
| GATGGAAGAGATGATGTTGT+TGG | 0.466524 | 3.1:+61663538 | MS.gene98273:CDS |
| GAGGGCACATGGTTTGGATG+AGG | 0.485338 | 3.1:+61663622 | MS.gene98273:CDS |
| AAAAGTGTTTGTTATTAGGC+GGG | 0.488015 | 3.1:-61663108 | None:intergenic |
| AGGTGAATGTAAGCTGAAGA+AGG | 0.488519 | 3.1:-61663194 | None:intergenic |
| GCTGAAGAAGGGGTGATGGT+TGG | 0.488753 | 3.1:-61663182 | None:intergenic |
| TGGGGTTATTGACTCTTGGA+GGG | 0.489544 | 3.1:+61664771 | MS.gene98273:CDS |
| GCTTCATTGCCTCATCAGAC+TGG | 0.495628 | 3.1:+61663707 | MS.gene98273:CDS |
| CAACCATACTTGGAGGAACC+AGG | 0.499090 | 3.1:-61663421 | None:intergenic |
| CTGGTTCCTCCAAGTATGGT+TGG | 0.504709 | 3.1:+61663422 | MS.gene98273:CDS |
| ACATGTCCACTCTCAACATA+AGG | 0.504850 | 3.1:-61664595 | None:intergenic |
| TCCTCCAAGTATGGTTGGAA+CGG | 0.506169 | 3.1:+61663427 | MS.gene98273:CDS |
| ATGGAAGAGATGATGTTGTT+GGG | 0.509834 | 3.1:+61663539 | MS.gene98273:CDS |
| GCGGAGCCGAGAGCGACGAT+GGG | 0.516001 | 3.1:-61663254 | None:intergenic |
| AAAAGAGAGTGGCCTATATG+AGG | 0.521359 | 3.1:+61664695 | MS.gene98273:CDS |
| GACTTCCCCATCGTCGCTCT+CGG | 0.522224 | 3.1:+61663248 | MS.gene98273:CDS |
| AAGAGTTGTGGGAGGGCACA+TGG | 0.523910 | 3.1:+61663611 | MS.gene98273:CDS |
| AGCGGAGCCGAGAGCGACGA+TGG | 0.527821 | 3.1:-61663255 | None:intergenic |
| TGGCTCTGCAGAGAAATCAA+TGG | 0.537726 | 3.1:+61663323 | MS.gene98273:CDS |
| GTGTCATAAACTACATTCAA+TGG | 0.538852 | 3.1:+61663303 | MS.gene98273:CDS |
| GTCGTTTGTTTGCGTTGAAG+CGG | 0.539866 | 3.1:-61663273 | None:intergenic |
| GGTGAATGTAAGCTGAAGAA+GGG | 0.540772 | 3.1:-61663193 | None:intergenic |
| GTCAATAACCCCAAAAGCAA+GGG | 0.541226 | 3.1:-61664761 | None:intergenic |
| TAATAGCAAGGACAAAGCAT+TGG | 0.546969 | 3.1:+61664468 | MS.gene98273:CDS |
| TAGACCTCTTGCTGTTCTCA+AGG | 0.547538 | 3.1:-61664506 | None:intergenic |
| AAGTTTAAGGCTCGCCATTG+AGG | 0.549781 | 3.1:+61663745 | MS.gene98273:CDS |
| ATGAGTTGGCTGTGCCTCAA+TGG | 0.550891 | 3.1:-61663759 | None:intergenic |
| CCGAGGCCAAAGGCATAGAA+AGG | 0.554611 | 3.1:-61664328 | None:intergenic |
| TGGCAGCGTTTACGACAGAA+AGG | 0.557441 | 3.1:-61663218 | None:intergenic |
| TATAAACCTTATGTTGAGAG+TGG | 0.557941 | 3.1:+61664589 | MS.gene98273:CDS |
| ATGAGGCTAAGTGATCCAAA+TGG | 0.560677 | 3.1:+61664712 | MS.gene98273:CDS |
| GTAGCTTCTTGGAGTGCAGA+AGG | 0.561374 | 3.1:-61664799 | None:intergenic |
| ACCGTTCCAACCATACTTGG+AGG | 0.563000 | 3.1:-61663428 | None:intergenic |
| TTCTTACAATCAAACGTACC+CGG | 0.565207 | 3.1:-61663515 | None:intergenic |
| AGTCAATAACCCCAAAAGCA+AGG | 0.565995 | 3.1:-61664762 | None:intergenic |
| TGCAAAGACGCCGCTTCAGA+CGG | 0.568649 | 3.1:+61663373 | MS.gene98273:CDS |
| AGTTGTTGAAGAGTTGTGGG+AGG | 0.572758 | 3.1:+61663603 | MS.gene98273:CDS |
| AACAAGGCACAAAATTTGGA+AGG | 0.574125 | 3.1:+61663807 | MS.gene98273:CDS |
| GAAGGCAATGGAAATTCCCC+TGG | 0.579543 | 3.1:-61664169 | None:intergenic |
| AATTTCGATGGAAATGGACC+CGG | 0.583112 | 3.1:+61663496 | MS.gene98273:CDS |
| CTCATCAGACTGGTGAAATG+TGG | 0.586079 | 3.1:+61663717 | MS.gene98273:CDS |
| TCATAAACAGAAACATGAGT+TGG | 0.592813 | 3.1:-61663773 | None:intergenic |
| GAATGAGTACATGAAATTCG+TGG | 0.596236 | 3.1:+61664399 | MS.gene98273:CDS |
| ACTAGTAGAGCCGAGGCCAA+AGG | 0.596278 | 3.1:-61664338 | None:intergenic |
| TCAGCGGATTGTGTCTCAGA+AGG | 0.596735 | 3.1:-61664187 | None:intergenic |
| CTGTCCTTGAGAACAGCAAG+AGG | 0.597347 | 3.1:+61664502 | MS.gene98273:CDS |
| ATCAGCAGCTACTGTAAGAG+TGG | 0.597915 | 3.1:+61664265 | MS.gene98273:CDS |
| ATTTCGATGGAAATGGACCC+GGG | 0.599512 | 3.1:+61663497 | MS.gene98273:CDS |
| GTAAGCTGAAGAAGGGGTGA+TGG | 0.604094 | 3.1:-61663186 | None:intergenic |
| GATTGTGTCTCAGAAGGCAA+TGG | 0.604210 | 3.1:-61664181 | None:intergenic |
| GGAGTGAATAGAGTTTCTCT+GGG | 0.605409 | 3.1:+61663560 | MS.gene98273:CDS |
| CACATTTCACCAGTCTGATG+AGG | 0.607000 | 3.1:-61663716 | None:intergenic |
| AATGTTAACAGGTATTCACC+AGG | 0.607528 | 3.1:+61664151 | MS.gene98273:intron |
| TGAAAGTGCTGAAATTTCGA+TGG | 0.611357 | 3.1:+61663484 | MS.gene98273:CDS |
| TGGTTTGGATGAGGTTCATG+AGG | 0.613397 | 3.1:+61663631 | MS.gene98273:CDS |
| GTTGTTGAAGAGTTGTGGGA+GGG | 0.619959 | 3.1:+61663604 | MS.gene98273:CDS |
| TCTTACAATCAAACGTACCC+GGG | 0.621772 | 3.1:-61663514 | None:intergenic |
| GGCAGCGTTTACGACAGAAA+GGG | 0.622614 | 3.1:-61663217 | None:intergenic |
| CGGAGCCGAGAGCGACGATG+GGG | 0.623355 | 3.1:-61663253 | None:intergenic |
| ATACTTGGAGGAACCAGGGA+CGG | 0.624368 | 3.1:-61663416 | None:intergenic |
| TATGATCTGCAAATTGAACA+AGG | 0.624447 | 3.1:+61663791 | MS.gene98273:CDS |
| TGATGACAACATTAATAGCA+AGG | 0.635250 | 3.1:+61664456 | MS.gene98273:CDS |
| TGAATGTAGTTTATGACACG+CGG | 0.644338 | 3.1:-61663299 | None:intergenic |
| GTGAATGTAAGCTGAAGAAG+GGG | 0.649743 | 3.1:-61663192 | None:intergenic |
| TCATCAGACTGGTGAAATGT+GGG | 0.649858 | 3.1:+61663718 | MS.gene98273:CDS |
| AACCATACTTGGAGGAACCA+GGG | 0.649992 | 3.1:-61663420 | None:intergenic |
| AGCGTTTACGACAGAAAGGG+AGG | 0.660387 | 3.1:-61663214 | None:intergenic |
| CGATGGGGAAGTCACAGTAG+TGG | 0.663567 | 3.1:-61663238 | None:intergenic |
| CAATAAAACTAGTAGAGCCG+AGG | 0.664303 | 3.1:-61664345 | None:intergenic |
| TGTTAACAGGTATTCACCAG+GGG | 0.672471 | 3.1:+61664153 | MS.gene98273:intron |
| ATGTTAACAGGTATTCACCA+GGG | 0.678250 | 3.1:+61664152 | MS.gene98273:intron |
| TCAGACTGGTGAAATGTGGG+AGG | 0.678428 | 3.1:+61663721 | MS.gene98273:CDS |
| GACATTGAAGATGAAATTTG+GGG | 0.678951 | 3.1:+61663457 | MS.gene98273:CDS |
| TTATGTTGAGAGTGGACATG+TGG | 0.679713 | 3.1:+61664597 | MS.gene98273:CDS |
| GAATGTAGTTTATGACACGC+GGG | 0.684399 | 3.1:-61663298 | None:intergenic |
| AACTGACTTAGAAAAGAGAG+TGG | 0.701765 | 3.1:+61664684 | MS.gene98273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGGTTTAATTTTTA+AGG | + | chr3.1:61664087-61664106 | MS.gene98273:intron | 10.0% |
| !! | AAGTAAATACAAATAATAAG+TGG | - | chr3.1:61663992-61664011 | None:intergenic | 15.0% |
| !! | ATTGATATAGTTAAAAAGTG+TGG | + | chr3.1:61663656-61663675 | MS.gene98273:CDS | 20.0% |
| !! | CTATTAACTCATTTGATAAA+AGG | - | chr3.1:61664741-61664760 | None:intergenic | 20.0% |
| !! | GATTTCATAATGGTTATAAT+TGG | - | chr3.1:61664248-61664267 | None:intergenic | 20.0% |
| !! | TAATAAGTAATATTCCTAAC+AGG | + | chr3.1:61663929-61663948 | MS.gene98273:intron | 20.0% |
| !!! | TTATAATGATGATGATGATT+TGG | + | chr3.1:61664114-61664133 | MS.gene98273:intron | 20.0% |
| !!! | TTGAAAAAGTGTTTGTTATT+AGG | - | chr3.1:61663115-61663134 | None:intergenic | 20.0% |
| !!! | TTGATATAGTTAAAAAGTGT+GGG | + | chr3.1:61663657-61663676 | MS.gene98273:CDS | 20.0% |
| ! | AGACATTGAAGATGAAATTT+GGG | + | chr3.1:61663456-61663475 | MS.gene98273:CDS | 25.0% |
| ! | TGTAACTTTATCGATGAAAT+TGG | + | chr3.1:61664034-61664053 | MS.gene98273:intron | 25.0% |
| ! | TTTGATAAAAGGAAACCATT+TGG | - | chr3.1:61664730-61664749 | None:intergenic | 25.0% |
| !! | TGATATAGTTAAAAAGTGTG+GGG | + | chr3.1:61663658-61663677 | MS.gene98273:CDS | 25.0% |
| !!! | AAAAAGTGTTTGTTATTAGG+CGG | - | chr3.1:61663112-61663131 | None:intergenic | 25.0% |
| !!! | TAGCAGCATTGATAATTTTT+TGG | + | chr3.1:61664073-61664092 | MS.gene98273:intron | 25.0% |
| AACTTTATCGATGAAATTGG+TGG | + | chr3.1:61664037-61664056 | MS.gene98273:intron | 30.0% | |
| ATTGAACAAGGCACAAAATT+TGG | + | chr3.1:61663803-61663822 | MS.gene98273:CDS | 30.0% | |
| ATTTACTCGAGTGACAAAAT+AGG | - | chr3.1:61663904-61663923 | None:intergenic | 30.0% | |
| GACATTGAAGATGAAATTTG+GGG | + | chr3.1:61663457-61663476 | MS.gene98273:CDS | 30.0% | |
| GAGACATTGAAGATGAAATT+TGG | + | chr3.1:61663455-61663474 | MS.gene98273:CDS | 30.0% | |
| GAGTGACAAAATAGGAAAAA+GGG | - | chr3.1:61663896-61663915 | None:intergenic | 30.0% | |
| GTGTCATAAACTACATTCAA+TGG | + | chr3.1:61663303-61663322 | MS.gene98273:CDS | 30.0% | |
| TACGTTTGATTGTAAGAAGA+TGG | + | chr3.1:61663520-61663539 | MS.gene98273:CDS | 30.0% | |
| TAGTCGCTAGTGTAAAATAT+AGG | - | chr3.1:61663845-61663864 | None:intergenic | 30.0% | |
| TATAAACCTTATGTTGAGAG+TGG | + | chr3.1:61664589-61664608 | MS.gene98273:CDS | 30.0% | |
| TATGATCTGCAAATTGAACA+AGG | + | chr3.1:61663791-61663810 | MS.gene98273:CDS | 30.0% | |
| TATTTACTTAAGCGACAAGA+CGG | + | chr3.1:61664003-61664022 | MS.gene98273:intron | 30.0% | |
| TCATAAACAGAAACATGAGT+TGG | - | chr3.1:61663776-61663795 | None:intergenic | 30.0% | |
| TGATGACAACATTAATAGCA+AGG | + | chr3.1:61664456-61664475 | MS.gene98273:CDS | 30.0% | |
| ! | ATTTTTATACGATGGCTTCA+AGG | + | chr3.1:61664209-61664228 | MS.gene98273:CDS | 30.0% |
| !! | AAAAGTGTTTGTTATTAGGC+GGG | - | chr3.1:61663111-61663130 | None:intergenic | 30.0% |
| AAAATTTGGAAGGCTGTAAG+TGG | + | chr3.1:61663817-61663836 | MS.gene98273:intron | 35.0% | |
| AAATGTGGGAGGAAAGTTTA+AGG | + | chr3.1:61663732-61663751 | MS.gene98273:CDS | 35.0% | |
| AACAAGGCACAAAATTTGGA+AGG | + | chr3.1:61663807-61663826 | MS.gene98273:CDS | 35.0% | |
| AAGCGTTACCAAGAATCATT+TGG | + | chr3.1:61664535-61664554 | MS.gene98273:CDS | 35.0% | |
| AATGTTAACAGGTATTCACC+AGG | + | chr3.1:61664151-61664170 | MS.gene98273:intron | 35.0% | |
| AGAAGTTGTTGAAGAGTTGT+GGG | + | chr3.1:61663600-61663619 | MS.gene98273:CDS | 35.0% | |
| AGCCATCGTATAAAAATCAG+CGG | - | chr3.1:61664206-61664225 | None:intergenic | 35.0% | |
| ATGGAAGAGATGATGTTGTT+GGG | + | chr3.1:61663539-61663558 | MS.gene98273:CDS | 35.0% | |
| ATGTTAACAGGTATTCACCA+GGG | + | chr3.1:61664152-61664171 | MS.gene98273:intron | 35.0% | |
| CATGAAATTCGTGGAAAATC+TGG | + | chr3.1:61664408-61664427 | MS.gene98273:CDS | 35.0% | |
| CGAGTGACAAAATAGGAAAA+AGG | - | chr3.1:61663897-61663916 | None:intergenic | 35.0% | |
| CTGAAGGTGAAAATGTTAAC+AGG | + | chr3.1:61664140-61664159 | MS.gene98273:intron | 35.0% | |
| GAATGAGTACATGAAATTCG+TGG | + | chr3.1:61664399-61664418 | MS.gene98273:CDS | 35.0% | |
| GTAGACACAACTTTACCTAT+TGG | + | chr3.1:61664296-61664315 | MS.gene98273:CDS | 35.0% | |
| TAATAGCAAGGACAAAGCAT+TGG | + | chr3.1:61664468-61664487 | MS.gene98273:CDS | 35.0% | |
| TGAATGTAGTTTATGACACG+CGG | - | chr3.1:61663302-61663321 | None:intergenic | 35.0% | |
| TGCTGAAATTTCGATGGAAA+TGG | + | chr3.1:61663490-61663509 | MS.gene98273:CDS | 35.0% | |
| TTCGTGGAAAATCTGGAAAA+TGG | + | chr3.1:61664415-61664434 | MS.gene98273:CDS | 35.0% | |
| TTCTTACAATCAAACGTACC+CGG | - | chr3.1:61663518-61663537 | None:intergenic | 35.0% | |
| ! | AACTGACTTAGAAAAGAGAG+TGG | + | chr3.1:61664684-61664703 | MS.gene98273:CDS | 35.0% |
| ! | CGACATCAACAATTCTCTTT+TGG | + | chr3.1:61664657-61664676 | MS.gene98273:CDS | 35.0% |
| !! | AGTAGCTGCTGATTTCATAA+TGG | - | chr3.1:61664258-61664277 | None:intergenic | 35.0% |
| !! | AGTTAATAGCCCTTGCTTTT+GGG | + | chr3.1:61664752-61664771 | MS.gene98273:CDS | 35.0% |
| !! | TGAAAGTGCTGAAATTTCGA+TGG | + | chr3.1:61663484-61663503 | MS.gene98273:CDS | 35.0% |
| !!! | ATCCGCTGATTTTTATACGA+TGG | + | chr3.1:61664201-61664220 | MS.gene98273:CDS | 35.0% |
| !!! | CTAGTTTTATTGGTGGTTTG+AGG | + | chr3.1:61664356-61664375 | MS.gene98273:CDS | 35.0% |
| AAAACCGTTCCAACCATACT+TGG | - | chr3.1:61663434-61663453 | None:intergenic | 40.0% | |
| AAAAGAGAGTGGCCTATATG+AGG | + | chr3.1:61664695-61664714 | MS.gene98273:CDS | 40.0% | |
| AATTTCGATGGAAATGGACC+CGG | + | chr3.1:61663496-61663515 | MS.gene98273:CDS | 40.0% | |
| ACATGTCCACTCTCAACATA+AGG | - | chr3.1:61664598-61664617 | None:intergenic | 40.0% | |
| AGGTGAATGTAAGCTGAAGA+AGG | - | chr3.1:61663197-61663216 | None:intergenic | 40.0% | |
| AGTCAATAACCCCAAAAGCA+AGG | - | chr3.1:61664765-61664784 | None:intergenic | 40.0% | |
| ATGAGGCTAAGTGATCCAAA+TGG | + | chr3.1:61664712-61664731 | MS.gene98273:CDS | 40.0% | |
| ATGTACTCATTCACCTTCCT+GGG | - | chr3.1:61664391-61664410 | None:intergenic | 40.0% | |
| CAATAAAACTAGTAGAGCCG+AGG | - | chr3.1:61664348-61664367 | None:intergenic | 40.0% | |
| CGAATGTGACAAAACGCTAA+AGG | + | chr3.1:61663953-61663972 | MS.gene98273:intron | 40.0% | |
| GAAAGGCTTGTACTTCCAAT+AGG | - | chr3.1:61664314-61664333 | None:intergenic | 40.0% | |
| GAATGTAGTTTATGACACGC+GGG | - | chr3.1:61663301-61663320 | None:intergenic | 40.0% | |
| GAGAAGTTGTTGAAGAGTTG+TGG | + | chr3.1:61663599-61663618 | MS.gene98273:CDS | 40.0% | |
| GATGGAAGAGATGATGTTGT+TGG | + | chr3.1:61663538-61663557 | MS.gene98273:CDS | 40.0% | |
| GGAGTGAATAGAGTTTCTCT+GGG | + | chr3.1:61663560-61663579 | MS.gene98273:CDS | 40.0% | |
| GGTGAATGTAAGCTGAAGAA+GGG | - | chr3.1:61663196-61663215 | None:intergenic | 40.0% | |
| GTCAATAACCCCAAAAGCAA+GGG | - | chr3.1:61664764-61664783 | None:intergenic | 40.0% | |
| GTGAATGTAAGCTGAAGAAG+GGG | - | chr3.1:61663195-61663214 | None:intergenic | 40.0% | |
| TACAAGCCTTTCTATGCCTT+TGG | + | chr3.1:61664322-61664341 | MS.gene98273:CDS | 40.0% | |
| TCATCAGACTGGTGAAATGT+GGG | + | chr3.1:61663718-61663737 | MS.gene98273:CDS | 40.0% | |
| TCTTACAATCAAACGTACCC+GGG | - | chr3.1:61663517-61663536 | None:intergenic | 40.0% | |
| TGGATCACTTAGCCTCATAT+AGG | - | chr3.1:61664710-61664729 | None:intergenic | 40.0% | |
| TGTTAACAGGTATTCACCAG+GGG | + | chr3.1:61664153-61664172 | MS.gene98273:intron | 40.0% | |
| TTATGTTGAGAGTGGACATG+TGG | + | chr3.1:61664597-61664616 | MS.gene98273:CDS | 40.0% | |
| TTTGTCACATTCGTCCTGTT+AGG | - | chr3.1:61663946-61663965 | None:intergenic | 40.0% | |
| ! | AAAAGTGTGGGGTTGAGAAT+TGG | + | chr3.1:61663669-61663688 | MS.gene98273:CDS | 40.0% |
| ! | AAGTATGGTTGGAACGGTTT+TGG | + | chr3.1:61663433-61663452 | MS.gene98273:CDS | 40.0% |
| ! | AGGAAAAAGGGTGTGAGTTT+AGG | - | chr3.1:61663884-61663903 | None:intergenic | 40.0% |
| ! | GAGTTAATAGCCCTTGCTTT+TGG | + | chr3.1:61664751-61664770 | MS.gene98273:CDS | 40.0% |
| ! | GATGATGATTTGGAAGCTGA+AGG | + | chr3.1:61664124-61664143 | MS.gene98273:intron | 40.0% |
| !! | GTTAATAGCCCTTGCTTTTG+GGG | + | chr3.1:61664753-61664772 | MS.gene98273:CDS | 40.0% |
| !! | TTTGTTATTAGGCGGGTTGA+TGG | - | chr3.1:61663104-61663123 | None:intergenic | 40.0% |
| !!! | CTCGGCTCTACTAGTTTTAT+TGG | + | chr3.1:61664346-61664365 | MS.gene98273:CDS | 40.0% |
| !!! | CTTTTGGGGTTATTGACTCT+TGG | + | chr3.1:61664767-61664786 | MS.gene98273:CDS | 40.0% |
| !!! | GGCTCTACTAGTTTTATTGG+TGG | + | chr3.1:61664349-61664368 | MS.gene98273:CDS | 40.0% |
| AACCATACTTGGAGGAACCA+GGG | - | chr3.1:61663423-61663442 | None:intergenic | 45.0% | |
| AGAATCATTTGGCAGCTCTC+TGG | + | chr3.1:61664546-61664565 | MS.gene98273:CDS | 45.0% | |
| AGTTGTTGAAGAGTTGTGGG+AGG | + | chr3.1:61663603-61663622 | MS.gene98273:CDS | 45.0% | |
| ATCAGCAGCTACTGTAAGAG+TGG | + | chr3.1:61664265-61664284 | MS.gene98273:CDS | 45.0% | |
| ATTTCGATGGAAATGGACCC+GGG | + | chr3.1:61663497-61663516 | MS.gene98273:CDS | 45.0% | |
| CACATTTCACCAGTCTGATG+AGG | - | chr3.1:61663719-61663738 | None:intergenic | 45.0% | |
| CATGTACTCATTCACCTTCC+TGG | - | chr3.1:61664392-61664411 | None:intergenic | 45.0% | |
| CCAAAAAACACCGTCTGAAG+CGG | - | chr3.1:61663386-61663405 | None:intergenic | 45.0% | |
| CTCATCAGACTGGTGAAATG+TGG | + | chr3.1:61663717-61663736 | MS.gene98273:CDS | 45.0% | |
| GAGAGCTGCCAAATGATTCT+TGG | - | chr3.1:61664546-61664565 | None:intergenic | 45.0% | |
| GATTGTGTCTCAGAAGGCAA+TGG | - | chr3.1:61664184-61664203 | None:intergenic | 45.0% | |
| GGCGCTAGTGCACAAAAAAT+GGG | - | chr3.1:61663071-61663090 | None:intergenic | 45.0% | |
| GGGAGTGAATAGAGTTTCTC+TGG | + | chr3.1:61663559-61663578 | MS.gene98273:CDS | 45.0% | |
| GTCGTTTGTTTGCGTTGAAG+CGG | - | chr3.1:61663276-61663295 | None:intergenic | 45.0% | |
| GTTGTTGAAGAGTTGTGGGA+GGG | + | chr3.1:61663604-61663623 | MS.gene98273:CDS | 45.0% | |
| TCCTCCAAGTATGGTTGGAA+CGG | + | chr3.1:61663427-61663446 | MS.gene98273:CDS | 45.0% | |
| ! | AAGTTTAAGGCTCGCCATTG+AGG | + | chr3.1:61663745-61663764 | MS.gene98273:CDS | 45.0% |
| ! | GAGTGGACATGTGGTTTTCT+TGG | + | chr3.1:61664606-61664625 | MS.gene98273:CDS | 45.0% |
| ! | TGGCTCTGCAGAGAAATCAA+TGG | + | chr3.1:61663323-61663342 | MS.gene98273:CDS | 45.0% |
| ! | TGGTTTGGATGAGGTTCATG+AGG | + | chr3.1:61663631-61663650 | MS.gene98273:CDS | 45.0% |
| ! | TGGTTTTCTTGGACGAGCAA+AGG | + | chr3.1:61664617-61664636 | MS.gene98273:CDS | 45.0% |
| !! | GAGGAGTTTTGTCGAACAGT+TGG | - | chr3.1:61663146-61663165 | None:intergenic | 45.0% |
| !! | GTTTGAGGTTTTCAAGACCC+AGG | + | chr3.1:61664371-61664390 | MS.gene98273:CDS | 45.0% |
| !! | TAGACCTCTTGCTGTTCTCA+AGG | - | chr3.1:61664509-61664528 | None:intergenic | 45.0% |
| !! | TGGGGTTATTGACTCTTGGA+GGG | + | chr3.1:61664771-61664790 | MS.gene98273:CDS | 45.0% |
| !! | TTGGGGTTATTGACTCTTGG+AGG | + | chr3.1:61664770-61664789 | MS.gene98273:CDS | 45.0% |
| !!! | AGACGGTGTTTTTTGGAGGT+GGG | + | chr3.1:61663390-61663409 | MS.gene98273:CDS | 45.0% |
| !!! | ATTAGGCGGGTTGATGGTTT+TGG | - | chr3.1:61663098-61663117 | None:intergenic | 45.0% |
| !!! | CGGGTTGATGGTTTTGGTTT+GGG | - | chr3.1:61663092-61663111 | None:intergenic | 45.0% |
| !!! | CTTCAGACGGTGTTTTTTGG+AGG | + | chr3.1:61663386-61663405 | MS.gene98273:CDS | 45.0% |
| !!! | GGTTGGGTTGTTTTTGAGTG+AGG | - | chr3.1:61663168-61663187 | None:intergenic | 45.0% |
| !!! | TGGGTTGTTTTTGAGTGAGG+AGG | - | chr3.1:61663165-61663184 | None:intergenic | 45.0% |
| ACCGTTCCAACCATACTTGG+AGG | - | chr3.1:61663431-61663450 | None:intergenic | 50.0% | |
| AGCGTTTACGACAGAAAGGG+AGG | - | chr3.1:61663217-61663236 | None:intergenic | 50.0% | |
| ATACTTGGAGGAACCAGGGA+CGG | - | chr3.1:61663419-61663438 | None:intergenic | 50.0% | |
| CAACCATACTTGGAGGAACC+AGG | - | chr3.1:61663424-61663443 | None:intergenic | 50.0% | |
| CCTTTCTATGCCTTTGGCCT+CGG | + | chr3.1:61664328-61664347 | MS.gene98273:CDS | 50.0% | |
| CTGGTTCCTCCAAGTATGGT+TGG | + | chr3.1:61663422-61663441 | MS.gene98273:CDS | 50.0% | |
| CTGTCCTTGAGAACAGCAAG+AGG | + | chr3.1:61664502-61664521 | MS.gene98273:CDS | 50.0% | |
| GAAGGCAATGGAAATTCCCC+TGG | - | chr3.1:61664172-61664191 | None:intergenic | 50.0% | |
| GAGTTTAGGCGCGAAATCAC+TGG | - | chr3.1:61663870-61663889 | None:intergenic | 50.0% | |
| GCTTCATTGCCTCATCAGAC+TGG | + | chr3.1:61663707-61663726 | MS.gene98273:CDS | 50.0% | |
| GGCAGCGTTTACGACAGAAA+GGG | - | chr3.1:61663220-61663239 | None:intergenic | 50.0% | |
| GGGCGCTAGTGCACAAAAAA+TGG | - | chr3.1:61663072-61663091 | None:intergenic | 50.0% | |
| GTAAGCTGAAGAAGGGGTGA+TGG | - | chr3.1:61663189-61663208 | None:intergenic | 50.0% | |
| GTAGCTTCTTGGAGTGCAGA+AGG | - | chr3.1:61664802-61664821 | None:intergenic | 50.0% | |
| TCAGACTGGTGAAATGTGGG+AGG | + | chr3.1:61663721-61663740 | MS.gene98273:CDS | 50.0% | |
| TCTGGGAGTTCAAGCGTTTC+AGG | + | chr3.1:61663577-61663596 | MS.gene98273:CDS | 50.0% | |
| TGGCAGCGTTTACGACAGAA+AGG | - | chr3.1:61663221-61663240 | None:intergenic | 50.0% | |
| ! | ATGAGTTGGCTGTGCCTCAA+TGG | - | chr3.1:61663762-61663781 | None:intergenic | 50.0% |
| ! | CTGAAGAAGGGGTGATGGTT+GGG | - | chr3.1:61663184-61663203 | None:intergenic | 50.0% |
| !! | GAGGTTTTCAAGACCCAGGA+AGG | + | chr3.1:61664375-61664394 | MS.gene98273:CDS | 50.0% |
| !! | TCAGCGGATTGTGTCTCAGA+AGG | - | chr3.1:61664190-61664209 | None:intergenic | 50.0% |
| !! | TCTGGTTCTCTCTCTGGTTG+AGG | + | chr3.1:61664564-61664583 | MS.gene98273:CDS | 50.0% |
| !!! | CAGACGGTGTTTTTTGGAGG+TGG | + | chr3.1:61663389-61663408 | MS.gene98273:CDS | 50.0% |
| !!! | CCGCTTCAGACGGTGTTTTT+TGG | + | chr3.1:61663383-61663402 | MS.gene98273:CDS | 50.0% |
| !!! | GCGGGTTGATGGTTTTGGTT+TGG | - | chr3.1:61663093-61663112 | None:intergenic | 50.0% |
| ACTAGTAGAGCCGAGGCCAA+AGG | - | chr3.1:61664341-61664360 | None:intergenic | 55.0% | |
| CGATGGGGAAGTCACAGTAG+TGG | - | chr3.1:61663241-61663260 | None:intergenic | 55.0% | |
| GTCCCTGGTTCCTCCAAGTA+TGG | + | chr3.1:61663418-61663437 | MS.gene98273:CDS | 55.0% | |
| TGCAAAGACGCCGCTTCAGA+CGG | + | chr3.1:61663373-61663392 | MS.gene98273:CDS | 55.0% | |
| ! | AAGAGTTGTGGGAGGGCACA+TGG | + | chr3.1:61663611-61663630 | MS.gene98273:CDS | 55.0% |
| ! | CCGAGGCCAAAGGCATAGAA+AGG | - | chr3.1:61664331-61664350 | None:intergenic | 55.0% |
| ! | GAGGGCACATGGTTTGGATG+AGG | + | chr3.1:61663622-61663641 | MS.gene98273:CDS | 55.0% |
| ! | GCTGAAGAAGGGGTGATGGT+TGG | - | chr3.1:61663185-61663204 | None:intergenic | 55.0% |
| ! | TTGTGGGAGGGCACATGGTT+TGG | + | chr3.1:61663616-61663635 | MS.gene98273:CDS | 55.0% |
| !! | CAGCTCTCTGGTTCTCTCTC+TGG | + | chr3.1:61664558-61664577 | MS.gene98273:CDS | 55.0% |
| GACTTCCCCATCGTCGCTCT+CGG | + | chr3.1:61663248-61663267 | MS.gene98273:CDS | 60.0% | |
| AGCGGAGCCGAGAGCGACGA+TGG | - | chr3.1:61663258-61663277 | None:intergenic | 70.0% | |
| CGGAGCCGAGAGCGACGATG+GGG | - | chr3.1:61663256-61663275 | None:intergenic | 70.0% | |
| GCGGAGCCGAGAGCGACGAT+GGG | - | chr3.1:61663257-61663276 | None:intergenic | 70.0% | |
| TGGAGGTGGGACGCCGTCCC+TGG | + | chr3.1:61663403-61663422 | MS.gene98273:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 61663047 | 61664825 | 61663047 | ID=MS.gene98273 |
| chr3.1 | mRNA | 61663047 | 61664825 | 61663047 | ID=MS.gene98273.t1;Parent=MS.gene98273 |
| chr3.1 | exon | 61663047 | 61663831 | 61663047 | ID=MS.gene98273.t1.exon1;Parent=MS.gene98273.t1 |
| chr3.1 | CDS | 61663047 | 61663831 | 61663047 | ID=cds.MS.gene98273.t1;Parent=MS.gene98273.t1 |
| chr3.1 | exon | 61664162 | 61664825 | 61664162 | ID=MS.gene98273.t1.exon2;Parent=MS.gene98273.t1 |
| chr3.1 | CDS | 61664162 | 61664825 | 61664162 | ID=cds.MS.gene98273.t1;Parent=MS.gene98273.t1 |
| Gene Sequence |
| Protein sequence |
