AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99511

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99511.t1 MTR_1g040195 92.375 459 12 1 1 459 1 436 0.0 862
MS.gene99511.t1 MTR_1g040215 76.139 461 108 2 1 459 1 461 0.0 729
MS.gene99511.t1 MTR_1g040175 74.620 461 112 3 1 459 1 458 0.0 698
MS.gene99511.t1 MTR_1g040315 73.696 460 77 4 1 459 1 417 0.0 670
MS.gene99511.t1 MTR_1g040320 69.565 460 104 2 1 459 1 425 0.0 640
MS.gene99511.t1 MTR_5g076700 59.130 460 178 6 5 459 6 460 0.0 558
MS.gene99511.t1 MTR_7g114560 58.913 460 178 7 5 459 6 459 0.0 555
MS.gene99511.t1 MTR_7g114470 58.478 460 182 5 5 459 7 462 0.0 549
MS.gene99511.t1 MTR_7g114550 58.057 453 175 7 2 446 3 448 0.0 548
MS.gene99511.t1 MTR_7g114520 56.745 467 179 7 5 459 7 462 0.0 541
MS.gene99511.t1 MTR_1g081660 60.274 438 169 5 4 438 13 448 0.0 530
MS.gene99511.t1 MTR_7g114490 58.237 431 172 5 5 430 6 433 0.0 524
MS.gene99511.t1 MTR_0042s0190 69.360 297 89 2 165 459 1 297 5.83e-150 429
MS.gene99511.t1 MTR_7g114510 54.688 320 131 6 147 459 8 320 2.86e-116 344
MS.gene99511.t1 MTR_0042s0190 69.828 232 68 2 230 459 1 232 1.35e-114 336
MS.gene99511.t1 MTR_0502s0010 61.157 242 84 5 100 335 1 238 3.09e-99 297
MS.gene99511.t1 MTR_7g114420 52.000 300 107 7 165 459 1 268 2.35e-97 293
MS.gene99511.t1 MTR_3g035000 61.086 221 59 4 199 417 43 238 1.25e-81 254
MS.gene99511.t1 MTR_8g039950 91.473 129 11 0 1 129 1 129 1.02e-79 243
MS.gene99511.t1 MTR_3g098980 32.944 428 268 9 9 430 14 428 6.51e-78 249
MS.gene99511.t1 MTR_8g096530 34.937 395 245 7 1 390 1 388 2.44e-77 248
MS.gene99511.t1 MTR_0042s0230 76.190 147 35 0 1 147 1 147 1.01e-76 236
MS.gene99511.t1 MTR_7g027175 33.770 382 241 7 14 389 21 396 1.31e-72 236
MS.gene99511.t1 MTR_7g114500 57.333 150 64 0 2 151 3 152 1.65e-59 192
MS.gene99511.t1 MTR_1g053315 31.207 439 279 14 18 438 30 463 6.44e-57 195
MS.gene99511.t1 MTR_4g055170 28.918 453 297 9 3 435 6 453 1.48e-55 191
MS.gene99511.t1 MTR_3g112180 32.908 392 239 10 19 397 22 402 1.58e-54 189
MS.gene99511.t1 MTR_4g007540 31.250 432 265 16 16 430 10 426 3.03e-52 182
MS.gene99511.t1 MTR_3g051790 56.849 146 63 0 2 147 6 151 3.80e-52 174
MS.gene99511.t1 MTR_2g105330 29.508 427 276 11 17 430 11 425 8.10e-50 176
MS.gene99511.t1 MTR_3g071320 30.716 433 272 11 17 434 13 432 1.84e-49 174
MS.gene99511.t1 MTR_2g064495 29.274 427 277 11 17 430 11 425 1.65e-48 172
MS.gene99511.t1 MTR_8g075610 29.545 440 263 11 17 434 2 416 5.40e-48 170
MS.gene99511.t1 MTR_7g084940 28.440 436 291 10 5 430 12 436 3.86e-44 160
MS.gene99511.t1 MTR_7g110610 27.901 405 228 12 5 401 1 349 2.42e-42 154
MS.gene99511.t1 MTR_7g085930 28.421 475 264 18 9 432 6 455 9.07e-41 152
MS.gene99511.t1 MTR_7g084910 27.723 404 247 12 1 389 11 384 2.21e-39 147
MS.gene99511.t1 MTR_6g053810 28.851 409 255 13 56 437 63 462 2.94e-39 147
MS.gene99511.t1 MTR_2g015430 28.916 415 280 12 30 434 25 434 4.32e-39 147
MS.gene99511.t1 MTR_7g085990 27.505 469 276 17 9 432 2 451 8.01e-39 146
MS.gene99511.t1 MTR_4g127650 27.394 449 281 14 17 434 18 452 7.98e-38 144
MS.gene99511.t1 MTR_3g465990 27.253 455 284 16 16 437 17 457 3.35e-37 142
MS.gene99511.t1 MTR_3g465980 27.473 455 283 15 16 437 17 457 1.54e-36 140
MS.gene99511.t1 MTR_3g026950 26.277 411 263 10 13 390 6 409 1.81e-36 140
MS.gene99511.t1 MTR_7g086000 26.846 447 269 18 17 422 12 441 3.60e-36 139
MS.gene99511.t1 MTR_4g097090 28.326 466 288 17 1 434 1 452 3.61e-36 139
MS.gene99511.t1 MTR_3g465930 26.991 452 293 13 16 437 17 461 4.13e-34 133
MS.gene99511.t1 MTR_7g056087 26.351 444 277 14 17 432 12 433 2.31e-32 128
MS.gene99511.t1 MTR_3g465910 26.735 490 295 17 16 457 17 490 8.89e-32 127
MS.gene99511.t1 MTR_3g465880 28.322 459 281 16 16 437 17 464 7.18e-31 124
MS.gene99511.t1 MTR_4g013050 24.537 432 263 13 19 430 14 402 1.64e-29 119
MS.gene99511.t1 MTR_4g088765 66.250 80 25 1 1 78 1 80 3.49e-29 110
MS.gene99511.t1 MTR_3g049150 25.750 400 263 11 17 388 10 403 4.57e-29 119
MS.gene99511.t1 MTR_3g465950 27.273 341 220 8 16 336 17 349 7.75e-27 112
MS.gene99511.t1 MTR_3g101930 28.409 440 250 20 6 399 4 424 1.39e-26 112
MS.gene99511.t1 MTR_4g094835 25.616 406 258 15 46 428 49 433 2.86e-26 110
MS.gene99511.t1 MTR_3g101960 29.467 319 200 12 23 327 30 337 3.96e-26 110
MS.gene99511.t1 MTR_4g094842 26.106 452 278 18 8 428 9 435 2.03e-25 108
MS.gene99511.t1 MTR_4g094838 24.884 430 260 14 23 428 29 419 5.11e-25 107
MS.gene99511.t1 MTR_4g022290 26.515 396 243 13 23 395 31 401 8.78e-25 106
MS.gene99511.t1 MTR_5g090830 25.815 399 236 14 61 425 63 435 1.41e-24 106
MS.gene99511.t1 MTR_0190s0020 27.460 437 249 20 23 428 30 429 1.61e-24 105
MS.gene99511.t1 MTR_4g094828 25.467 428 275 15 24 428 31 437 3.50e-24 105
MS.gene99511.t1 MTR_5g090810 25.245 408 227 14 61 425 63 435 4.06e-24 105
MS.gene99511.t1 MTR_4g022800 26.376 436 260 20 23 428 25 429 5.39e-24 104
MS.gene99511.t1 MTR_3g101900 27.543 403 223 17 36 399 44 416 6.12e-24 104
MS.gene99511.t1 MTR_5g090880 26.000 400 235 15 61 425 64 437 8.00e-24 103
MS.gene99511.t1 MTR_3g102020 26.292 445 275 19 24 441 31 449 1.08e-23 103
MS.gene99511.t1 MTR_4g094832 27.809 356 213 14 94 428 85 417 2.23e-23 102
MS.gene99511.t1 MTR_8g041770 24.886 438 275 16 14 428 22 428 2.62e-23 102
MS.gene99511.t1 MTR_3g088420 27.378 431 267 18 23 435 25 427 3.88e-23 101
MS.gene99511.t1 MTR_7g026860 27.336 428 262 19 23 428 25 425 5.84e-23 101
MS.gene99511.t1 MTR_5g084870 23.469 392 257 14 15 386 9 377 1.22e-22 100
MS.gene99511.t1 MTR_3g101970 27.000 400 245 16 23 399 30 405 2.07e-22 99.8
MS.gene99511.t1 MTR_8g079710 26.757 441 250 21 23 428 30 432 2.34e-22 99.4
MS.gene99511.t1 MTR_5g084850 24.173 393 252 14 15 386 9 376 2.57e-22 99.4
MS.gene99511.t1 MTR_3g450690 24.752 404 221 14 64 423 72 436 1.59e-21 97.4
MS.gene99511.t1 MTR_3g102010 26.977 430 236 18 17 399 21 419 2.02e-21 97.1
MS.gene99511.t1 MTR_4g022720 25.236 424 273 15 23 428 25 422 2.02e-21 96.7
MS.gene99511.t1 MTR_4g022670 25.000 432 270 19 23 428 25 428 3.83e-21 95.9
MS.gene99511.t1 MTR_3g465870 28.041 296 189 9 16 294 19 307 4.73e-21 95.5
MS.gene99511.t1 MTR_8g079950 23.555 467 287 18 15 448 9 438 1.54e-20 94.4
MS.gene99511.t1 MTR_4g022760 28.344 314 196 10 23 321 25 324 2.68e-19 90.1
MS.gene99511.t1 MTR_8g079970 27.044 318 181 15 15 309 9 298 5.39e-19 89.4
MS.gene99511.t1 MTR_4g022825 25.225 444 253 19 23 428 25 427 2.93e-18 87.0
MS.gene99511.t1 MTR_5g084900 23.653 334 202 14 64 386 9 300 4.15e-17 83.2
MS.gene99511.t1 MTR_8g079980 25.000 308 201 12 15 309 9 299 6.50e-17 83.2
MS.gene99511.t1 MTR_7g114417 61.538 52 19 1 89 139 29 80 1.53e-15 72.0
MS.gene99511.t1 MTR_8g467590 23.877 423 253 21 15 399 9 400 2.07e-14 75.5
MS.gene99511.t1 MTR_3g051820 48.958 96 43 4 365 459 1 91 8.81e-14 67.4
MS.gene99511.t1 MTR_6g016815 28.302 212 123 9 59 249 64 267 4.49e-12 67.8
MS.gene99511.t1 MTR_3g102030 25.325 308 185 12 90 385 42 316 7.40e-12 66.6
MS.gene99511.t1 MTR_2g036780 26.846 149 106 1 45 193 47 192 7.08e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99511.t1 AT5G17540 57.940 466 184 9 1 459 1 461 0.0 525
MS.gene99511.t1 AT3G03480 57.336 443 174 11 5 439 15 450 2.78e-169 484
MS.gene99511.t1 AT5G41040 31.891 439 279 9 4 434 28 454 9.54e-80 255
MS.gene99511.t1 AT5G41040 31.891 439 279 9 4 434 12 438 1.01e-79 254
MS.gene99511.t1 AT5G63560 33.183 443 270 11 1 435 1 425 2.71e-78 250
MS.gene99511.t1 AT3G48720 31.121 437 281 11 1 430 1 424 4.13e-73 237
MS.gene99511.t1 AT1G27620 29.680 438 279 11 10 435 10 430 2.85e-54 187
MS.gene99511.t1 AT3G62160 31.017 403 240 13 5 392 1 380 8.04e-52 181
MS.gene99511.t1 AT1G65450 29.605 456 285 13 1 438 12 449 5.15e-51 179
MS.gene99511.t1 AT2G40230 33.333 387 234 11 17 388 13 390 3.48e-50 176
MS.gene99511.t1 AT2G19070 28.837 430 265 13 35 434 29 447 1.08e-47 170
MS.gene99511.t1 AT5G57840 28.182 440 274 11 17 432 11 432 1.73e-47 169
MS.gene99511.t1 AT1G03390 29.861 432 279 14 19 434 32 455 2.05e-47 170
MS.gene99511.t1 AT5G48930 29.452 438 271 14 17 434 11 430 8.68e-47 167
MS.gene99511.t1 AT1G28680 28.571 441 292 14 16 439 11 445 1.51e-46 167
MS.gene99511.t1 AT1G28680 31.105 344 223 10 16 349 11 350 7.31e-43 156
MS.gene99511.t1 AT3G47170 26.899 487 279 17 3 438 6 466 1.12e-42 157
MS.gene99511.t1 AT5G07080 28.298 470 273 16 1 435 6 446 4.81e-41 152
MS.gene99511.t1 AT2G23510 28.112 466 286 17 1 437 5 450 1.78e-37 142
MS.gene99511.t1 AT2G25150 28.322 459 292 16 5 439 9 454 2.18e-36 140
MS.gene99511.t1 AT1G78990 27.723 404 254 12 62 444 65 451 1.73e-32 129
MS.gene99511.t1 AT1G31490 25.823 395 247 13 17 387 14 386 5.97e-30 121
MS.gene99511.t1 AT5G07860 27.069 447 271 15 15 435 24 441 3.16e-28 116
MS.gene99511.t1 AT5G07870 27.093 454 262 17 15 428 24 448 8.84e-27 112
MS.gene99511.t1 AT1G65450 28.283 297 184 8 158 438 2 285 9.65e-27 109
MS.gene99511.t1 AT5G42830 27.938 451 251 16 15 428 23 436 2.21e-26 111
MS.gene99511.t1 AT5G07850 26.942 412 260 15 15 399 24 421 1.51e-25 108
MS.gene99511.t1 AT1G32910 26.173 405 256 15 62 439 63 451 1.57e-25 108
MS.gene99511.t1 AT3G50270 27.119 413 233 15 23 397 30 412 7.95e-25 107
MS.gene99511.t1 AT5G67150 25.513 439 263 18 23 430 30 435 2.46e-23 102
MS.gene99511.t1 AT4G31910 26.862 443 287 13 17 430 17 451 5.56e-23 101
MS.gene99511.t1 AT3G50280 26.382 398 252 17 23 397 28 407 1.26e-22 100
MS.gene99511.t1 AT5G38130 25.628 398 253 14 23 397 48 425 2.11e-22 99.8
MS.gene99511.t1 AT1G24430 24.079 407 257 15 43 430 41 414 3.35e-22 99.0
MS.gene99511.t1 AT3G26040 23.232 396 261 14 15 388 9 383 7.06e-22 98.2
MS.gene99511.t1 AT5G23970 24.569 464 288 17 13 456 7 428 1.74e-20 94.0
MS.gene99511.t1 AT1G24420 26.185 401 236 17 15 386 11 380 3.52e-20 93.2
MS.gene99511.t1 AT1G24420 26.185 401 236 17 15 386 11 380 3.52e-20 93.2
MS.gene99511.t1 AT5G16410 25.575 348 224 12 62 388 89 422 1.76e-19 91.3
MS.gene99511.t1 AT5G67160 25.917 409 240 15 58 435 50 426 7.31e-18 85.9
MS.gene99511.t1 AT3G30280 24.222 450 283 18 6 427 3 422 6.91e-17 83.2
MS.gene99511.t1 AT3G50280 25.641 273 185 10 138 397 10 277 6.82e-15 75.9
MS.gene99511.t1 AT5G23940 24.586 423 239 16 61 438 62 449 1.13e-14 76.6
MS.gene99511.t1 AT3G50290 26.022 269 160 8 138 382 16 269 7.65e-14 72.0
MS.gene99511.t1 AT5G47950 22.799 443 281 18 6 427 3 405 6.70e-13 70.9
MS.gene99511.t1 AT3G23840 27.638 199 119 6 80 269 81 263 6.23e-12 67.8

Find 109 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTGTTGGTGATTC+AGG 0.100165 1.3:-23046859 MS.gene99511:intron
TGCGGTGAGGATTTCGAAAT+TGG 0.188633 1.3:+23044297 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 1.3:+23047119 None:intergenic
GCATTCAGTTGCAGATTTAA+TGG 0.210614 1.3:-23044038 MS.gene99511:CDS
TTTGAGGGTCTTACAAATTC+AGG 0.246276 1.3:+23047236 None:intergenic
GGATTTGGAGATGTTGAATT+TGG 0.267773 1.3:-23043950 MS.gene99511:CDS
TTTGAAAACGTAACCCTTCT+TGG 0.271683 1.3:+23047171 None:intergenic
GCGATGGGCCATGTCATCTA+AGG 0.301591 1.3:+23044390 None:intergenic
CACCTAAGGCACTCATGAAT+TGG 0.305227 1.3:+23044551 None:intergenic
ATCCATTTGCAGGTAGGTTA+AGG 0.320236 1.3:-23047049 MS.gene99511:CDS
GATGTTAGTTTGAAAGAATT+TGG 0.347283 1.3:-23046957 MS.gene99511:CDS
GAAACAATGAAACTAGGTTT+TGG 0.349312 1.3:+23043719 None:intergenic
TTATAAGTATGATCCAAATA+TGG 0.357454 1.3:-23047132 MS.gene99511:CDS
TAAGGGGATAATTGTTCCTT+TGG 0.358085 1.3:+23044408 None:intergenic
GATGTGACACGTGCTGGATT+TGG 0.358389 1.3:-23043965 MS.gene99511:CDS
GAATGAACCTTCAATCTTAC+CGG 0.372906 1.3:-23044512 MS.gene99511:CDS
TGGAGATGTTGAATTTGGTT+GGG 0.375385 1.3:-23043945 MS.gene99511:CDS
TACAACCGCCGGGAAACTAA+TGG 0.379563 1.3:-23044128 MS.gene99511:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 1.3:-23043840 MS.gene99511:CDS
TTGGAGATGTTGAATTTGGT+TGG 0.391534 1.3:-23043946 MS.gene99511:CDS
AATGAGCGACGCAGCAGGTT+TGG 0.400466 1.3:-23044575 MS.gene99511:CDS
TGCAGATTTAATGGTTATCA+AGG 0.405426 1.3:-23044029 MS.gene99511:CDS
AACATTAACGACCCTACTAT+TGG 0.407669 1.3:-23043746 MS.gene99511:CDS
ATAATTGTTCCTTTGGTGTC+GGG 0.410344 1.3:+23044415 None:intergenic
AAATCCTCACCGCATGCCTT+TGG 0.410833 1.3:-23044288 MS.gene99511:CDS
CTGCTGCGTCGCTCATTGTA+TGG 0.414060 1.3:+23044581 None:intergenic
CGAACTTCTTCGTCAGTGTC+TGG 0.418327 1.3:+23044241 None:intergenic
TCCATTTGCAGGTAGGTTAA+GGG 0.425790 1.3:-23047048 MS.gene99511:CDS
GTCCAATTCATGAGTGCCTT+AGG 0.433988 1.3:-23044553 MS.gene99511:CDS
TCCCTTAACCTACCTGCAAA+TGG 0.437418 1.3:+23047047 None:intergenic
CCGGCGGTTGTAACCGCGAC+GGG 0.439479 1.3:+23044139 None:intergenic
TCACTGTGAATGATAGAGAT+TGG 0.444139 1.3:+23047270 None:intergenic
AGGTCCTGACAGGAAACTTA+TGG 0.445457 1.3:-23047024 MS.gene99511:CDS
AGTGCTTAACTCTCCATTGT+TGG 0.450887 1.3:-23046868 MS.gene99511:CDS
CCCGTCGCGGTTACAACCGC+CGG 0.452094 1.3:-23044139 MS.gene99511:CDS
GCATTACCGTAGTAACCATT+TGG 0.454482 1.3:+23044172 None:intergenic
AAACTAATGGAAAATCCGTT+GGG 0.456426 1.3:-23044115 MS.gene99511:CDS
TACTTATAAAATTGTATCAC+TGG 0.463814 1.3:+23047146 None:intergenic
CACTGTGAATGATAGAGATT+GGG 0.466767 1.3:+23047271 None:intergenic
TTGAGGGTCTTACAAATTCA+GGG 0.476311 1.3:+23047237 None:intergenic
CAATCTTACCGGTATGGCAT+AGG 0.482008 1.3:-23044501 MS.gene99511:CDS
GGAGATGTTGAATTTGGTTG+GGG 0.493359 1.3:-23043944 MS.gene99511:CDS
TTTAATCCACCGTTACCAAA+TGG 0.496653 1.3:-23044187 MS.gene99511:CDS
TGCCATACCGGTAAGATTGA+AGG 0.498825 1.3:+23044505 None:intergenic
AAGTATGATCCAAATATGGC+AGG 0.501582 1.3:-23047128 MS.gene99511:CDS
CGAATTGTGGCTACCTCGGT+TGG 0.505273 1.3:+23044352 None:intergenic
AGCTCATCCAAACAAGGAAA+AGG 0.507667 1.3:+23046918 None:intergenic
CGATGAGTGCATGTTACTCT+TGG 0.517477 1.3:+23044454 None:intergenic
AACTTCTCCATGGCTTGAGC+TGG 0.517646 1.3:+23043800 None:intergenic
GAAACTAATGGAAAATCCGT+TGG 0.517685 1.3:-23044116 MS.gene99511:CDS
GATAATTGTTCCTTTGGTGT+CGG 0.520228 1.3:+23044414 None:intergenic
CGCTCATTGTATGGTTTAGA+CGG 0.527004 1.3:+23044590 None:intergenic
GTATCTGATGTGACACGTGC+TGG 0.527780 1.3:-23043971 MS.gene99511:CDS
TCCGCAAGAAATTTCACCTA+AGG 0.535116 1.3:+23044537 None:intergenic
GGAGGAGTTGGTGCTATACC+TGG 0.535378 1.3:-23043893 MS.gene99511:CDS
AACCTTCAATCTTACCGGTA+TGG 0.535791 1.3:-23044507 MS.gene99511:CDS
GCACCAACTCCTCCTTTAGC+TGG 0.539177 1.3:+23043902 None:intergenic
CTCTTTGACGAACTTCTCCA+TGG 0.543009 1.3:+23043790 None:intergenic
TGAGTGCATGTTACTCTTGG+TGG 0.546616 1.3:+23044457 None:intergenic
CAGACATAGATGACCAAGAA+GGG 0.546800 1.3:-23047184 MS.gene99511:CDS
TCCACCATAAGTTTCCTGTC+AGG 0.550793 1.3:+23047020 None:intergenic
AATCTTACCGGTATGGCATA+GGG 0.551315 1.3:-23044500 MS.gene99511:CDS
CGATGGGCCATGTCATCTAA+GGG 0.551926 1.3:+23044391 None:intergenic
GGTTAAGGGAAGGTCCTGAC+AGG 0.552476 1.3:-23047034 MS.gene99511:CDS
TTGTTTACCAGCTCAAGCCA+TGG 0.552757 1.3:-23043807 MS.gene99511:CDS
AGAAGCTCCCTATGCCATAC+CGG 0.552944 1.3:+23044493 None:intergenic
ATAGGGAGCTTCTAAACGCA+AGG 0.556473 1.3:-23044483 MS.gene99511:CDS
CCGTCGCGGTTACAACCGCC+GGG 0.557301 1.3:-23044138 MS.gene99511:CDS
GCCTTAGGTGAAATTTCTTG+CGG 0.557407 1.3:-23044538 MS.gene99511:CDS
TTTATTATCCATTTGCAGGT+AGG 0.559740 1.3:-23047055 MS.gene99511:CDS
ATTAACGACCCTACTATTGG+TGG 0.562767 1.3:-23043743 MS.gene99511:CDS
AGCGCGAATTGTGGCTACCT+CGG 0.567132 1.3:+23044348 None:intergenic
GGACCAGCTAAAGGAGGAGT+TGG 0.569167 1.3:-23043905 MS.gene99511:CDS
CTCTATCATTCACAGTGAAG+AGG 0.571132 1.3:-23047265 MS.gene99511:CDS
AGTATGATCCAAATATGGCA+GGG 0.572294 1.3:-23047127 MS.gene99511:CDS
ACATTAGTTTAAGGTCTACA+AGG 0.572421 1.3:+23043694 None:intergenic
CCGTTACCAAATGGTTACTA+CGG 0.574521 1.3:-23044178 MS.gene99511:CDS
CCCGGCGGTTGTAACCGCGA+CGG 0.586843 1.3:+23044138 None:intergenic
AATACCTGAATCACCAACAA+TGG 0.589517 1.3:+23046855 None:intergenic
ATCTGTATTGTCAATGCTCG+TGG 0.590052 1.3:-23044214 MS.gene99511:CDS
GCAGATTTAATGGTTATCAA+GGG 0.590389 1.3:-23044028 MS.gene99511:CDS
CATACAATGAGCGACGCAGC+AGG 0.597595 1.3:-23044580 MS.gene99511:CDS
AACTCTAGTGCATACCCCAA+CGG 0.601820 1.3:+23044100 None:intergenic
AAGGAAGAAACAATGAAACT+AGG 0.603955 1.3:+23043713 None:intergenic
CCGTAGTAACCATTTGGTAA+CGG 0.610295 1.3:+23044178 None:intergenic
ATATAAAAGCTAGCAACACC+AGG 0.611199 1.3:+23043875 None:intergenic
TCAGACATAGATGACCAAGA+AGG 0.615146 1.3:-23047185 MS.gene99511:CDS
AATTATCCCCTTAGATGACA+TGG 0.615469 1.3:-23044398 MS.gene99511:CDS
TGGGAGAAGAGCGCGAATTG+TGG 0.616656 1.3:+23044339 None:intergenic
CTTCTAACCACAGTAAAATG+TGG 0.618528 1.3:+23044001 None:intergenic
AAAAGTAGCTCATCCAAACA+AGG 0.619216 1.3:+23046912 None:intergenic
TGAGGGTCTTACAAATTCAG+GGG 0.622901 1.3:+23047238 None:intergenic
ATGGTGGATTGTAATGATGA+AGG 0.626655 1.3:-23047005 MS.gene99511:CDS
CGATTGTACGACAACGCCAA+AGG 0.629387 1.3:+23044272 None:intergenic
GAACAAGTTCCCGACACCAA+AGG 0.634936 1.3:-23044424 MS.gene99511:CDS
GCTTGAGCTGGTAAACAAAG+TGG 0.635861 1.3:+23043812 None:intergenic
TCATCCAAACAAGGAAAAGG+AGG 0.640809 1.3:+23046921 None:intergenic
TTTGCAGGTAGGTTAAGGGA+AGG 0.651163 1.3:-23047044 MS.gene99511:CDS
TAGTAACCATTTGGTAACGG+TGG 0.653193 1.3:+23044181 None:intergenic
TAGGTAACACGTCTCAAGTG+TGG 0.654765 1.3:-23044631 MS.gene99511:CDS
AACGCCAAAGGCATGCGGTG+AGG 0.656317 1.3:+23044284 None:intergenic
TCCTGACAGGAAACTTATGG+TGG 0.657173 1.3:-23047021 MS.gene99511:CDS
TAGGGAGCTTCTAAACGCAA+GGG 0.659865 1.3:-23044482 MS.gene99511:CDS
TTAAGCACTTCTGAAGAACC+AGG 0.667440 1.3:+23046882 None:intergenic
GAGATGTTGAATTTGGTTGG+GGG 0.671180 1.3:-23043943 MS.gene99511:CDS
AACTAATGGAAAATCCGTTG+GGG 0.673325 1.3:-23044114 MS.gene99511:CDS
GTAACACGTCTCAAGTGTGG+TGG 0.692143 1.3:-23044628 MS.gene99511:CDS
GATGGGCCATGTCATCTAAG+GGG 0.704148 1.3:+23044392 None:intergenic
ACGACAACGCCAAAGGCATG+CGG 0.713965 1.3:+23044279 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGATAACTTTATATTA+TGG - chr1.3:23044345-23044364 MS.gene99511:CDS 10.0%
!! ATATTGAAACAATATTTAAA+GGG - chr1.3:23044492-23044511 MS.gene99511:CDS 10.0%
!! ATGAATTAATTAGTTAAAAT+TGG + chr1.3:23046285-23046304 None:intergenic 10.0%
!!! ATGAATTTTTATATCTTTTA+AGG - chr1.3:23045980-23045999 MS.gene99511:intron 10.0%
!!! ATTATTTTAGGTTATTATTT+TGG + chr1.3:23044765-23044784 None:intergenic 10.0%
!!! TAAAAAATTCTGATTTTTTT+TGG + chr1.3:23045942-23045961 None:intergenic 10.0%
!!! TAACCTAAAATAATTTTTTT+AGG - chr1.3:23044771-23044790 MS.gene99511:intron 10.0%
!!! TATTTCTTTTGAAAAATTAA+CGG + chr1.3:23044330-23044349 None:intergenic 10.0%
!!! TTTCCTAAAAAAATTATTTT+AGG + chr1.3:23044777-23044796 None:intergenic 10.0%
!! CATATTGAAACAATATTTAA+AGG - chr1.3:23044491-23044510 MS.gene99511:CDS 15.0%
!! TTATTTAATTGCATAAAAAG+TGG - chr1.3:23044878-23044897 MS.gene99511:intron 15.0%
!!! ATTATCACTTTTCATTTTTT+TGG - chr1.3:23044949-23044968 MS.gene99511:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr1.3:23046139-23046158 MS.gene99511:intron 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG + chr1.3:23045826-23045845 None:intergenic 15.0%
!!! TTATCACTTTTCATTTTTTT+GGG - chr1.3:23044950-23044969 MS.gene99511:intron 15.0%
!!! TTATTTTTCTCACTTTTTAT+TGG - chr1.3:23045477-23045496 MS.gene99511:intron 15.0%
!!! TTTTATGCAATTAAATAAGA+TGG + chr1.3:23044876-23044895 None:intergenic 15.0%
!! AAAAAAAATTAATTCAGCTG+AGG - chr1.3:23045230-23045249 MS.gene99511:intron 20.0%
!! CTTACATGTAAATTTGTAAA+TGG - chr1.3:23044978-23044997 MS.gene99511:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr1.3:23046199-23046218 MS.gene99511:intron 20.0%
!! GAAAAGTTGACATATTTATA+TGG + chr1.3:23046218-23046199 None:intergenic 20.0%
!! TACTTATAAAATTGTATCAC+TGG + chr1.3:23043841-23043860 None:intergenic 20.0%
!! TAGACAAAATTTATACATCA+CGG - chr1.3:23045665-23045684 MS.gene99511:intron 20.0%
!! TATATTTCACAAATTTACAG+TGG - chr1.3:23044197-23044216 MS.gene99511:CDS 20.0%
!! TATTCCTAGGATTTAAATAT+GGG + chr1.3:23044696-23044715 None:intergenic 20.0%
!! TGTGATTGTTATAAAAACAA+GGG + chr1.3:23046242-23046261 None:intergenic 20.0%
!! TTATAAGTATGATCCAAATA+TGG - chr1.3:23043852-23043871 MS.gene99511:CDS 20.0%
!! TTATTCCTAGGATTTAAATA+TGG + chr1.3:23044697-23044716 None:intergenic 20.0%
!! TTTAGGAAACACAAAATAAT+TGG - chr1.3:23044788-23044807 MS.gene99511:intron 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr1.3:23046135-23046154 None:intergenic 20.0%
!!! AAATTTTCAATCTTCACTTT+TGG - chr1.3:23045830-23045849 MS.gene99511:intron 20.0%
!!! AAGAAAATGTTTCCATTTTT+GGG - chr1.3:23044633-23044652 MS.gene99511:intron 20.0%
!!! CAAGCACAAATATATTTTTT+TGG - chr1.3:23045101-23045120 MS.gene99511:intron 20.0%
!!! CTTATCTCATATTGTTTTTA+GGG - chr1.3:23045723-23045742 MS.gene99511:intron 20.0%
!!! CTTTTCTAATAATATCAACA+GGG + chr1.3:23043888-23043907 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr1.3:23046138-23046157 MS.gene99511:intron 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG + chr1.3:23045827-23045846 None:intergenic 20.0%
!!! TAAGAAAATGTTTCCATTTT+TGG - chr1.3:23044632-23044651 MS.gene99511:intron 20.0%
!!! TATCACTTTTCATTTTTTTG+GGG - chr1.3:23044951-23044970 MS.gene99511:intron 20.0%
!!! TCTTATCTCATATTGTTTTT+AGG - chr1.3:23045722-23045741 MS.gene99511:intron 20.0%
!!! TGGTACATATATGTTTTTAA+AGG - chr1.3:23044998-23045017 MS.gene99511:intron 20.0%
!!! TTATTCAACTAGTTAGATTT+TGG - chr1.3:23044440-23044459 MS.gene99511:CDS 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG - chr1.3:23045739-23045758 MS.gene99511:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG - chr1.3:23045490-23045509 MS.gene99511:intron 20.0%
! AATATAGTACGAGTATATGT+TGG + chr1.3:23044301-23044320 None:intergenic 25.0%
! ATACCTTTCAAAAATGCTAA+AGG - chr1.3:23047130-23047149 MS.gene99511:CDS 25.0%
! ATATAGTACAAGTGTATGTT+CGG + chr1.3:23044254-23044273 None:intergenic 25.0%
! ATATAGTACGAGTATATGTT+GGG + chr1.3:23044300-23044319 None:intergenic 25.0%
! CATATACTCGTACTATATTA+AGG - chr1.3:23044302-23044321 MS.gene99511:CDS 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr1.3:23046198-23046217 MS.gene99511:intron 25.0%
! CTGTGATTGTTATAAAAACA+AGG + chr1.3:23046243-23046262 None:intergenic 25.0%
! TTTCTATCGAATAGAATCTT+AGG - chr1.3:23044736-23044755 MS.gene99511:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr1.3:23046167-23046186 MS.gene99511:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr1.3:23046186-23046167 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr1.3:23046168-23046187 MS.gene99511:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr1.3:23046187-23046168 None:intergenic 25.0%
!! GAAAGTAATTTTACTTCATG+AGG + chr1.3:23043781-23043800 None:intergenic 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG - chr1.3:23044027-23044046 MS.gene99511:CDS 25.0%
!! GCTTTTCTAATAATATCAAC+AGG + chr1.3:23043889-23043908 None:intergenic 25.0%
!! TTGATTGTAACAACACATTT+TGG + chr1.3:23045333-23045352 None:intergenic 25.0%
!!! AACCATTTTTTGACAACTTT+TGG + chr1.3:23045575-23045594 None:intergenic 25.0%
!!! AATCATTAACTTGTATCTTG+AGG + chr1.3:23044534-23044553 None:intergenic 25.0%
!!! ATCACTTTTCATTTTTTTGG+GGG - chr1.3:23044952-23044971 MS.gene99511:intron 25.0%
!!! ATCATTAACTTGTATCTTGA+GGG + chr1.3:23044533-23044552 None:intergenic 25.0%
AAAACAATGGAGAGAGAAAA+AGG - chr1.3:23045503-23045522 MS.gene99511:intron 30.0%
AAACTAATGGAAAATCCGTT+GGG - chr1.3:23046869-23046888 MS.gene99511:CDS 30.0%
AAGGAAGAAACAATGAAACT+AGG + chr1.3:23047274-23047293 None:intergenic 30.0%
AGATTTGTAAATGACACAAG+TGG - chr1.3:23045035-23045054 MS.gene99511:intron 30.0%
ATGACCCATATTTAAATCCT+AGG - chr1.3:23044689-23044708 MS.gene99511:intron 30.0%
GCAGATTTAATGGTTATCAA+GGG - chr1.3:23046956-23046975 MS.gene99511:CDS 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG - chr1.3:23045570-23045589 MS.gene99511:intron 30.0%
TATATTTGTGCTTGAACTAC+AGG + chr1.3:23045095-23045114 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr1.3:23045452-23045471 None:intergenic 30.0%
TGCAGATTTAATGGTTATCA+AGG - chr1.3:23046955-23046974 MS.gene99511:CDS 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr1.3:23046154-23046173 MS.gene99511:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr1.3:23046173-23046154 None:intergenic 30.0%
TTTATTATCCATTTGCAGGT+AGG - chr1.3:23043929-23043948 MS.gene99511:CDS 30.0%
TTTCAAAAATGCTAAAGGAG+AGG - chr1.3:23047135-23047154 MS.gene99511:CDS 30.0%
! GAAACAATGAAACTAGGTTT+TGG + chr1.3:23047268-23047287 None:intergenic 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG + chr1.3:23047136-23047155 None:intergenic 30.0%
!! CTTGAATTTTGACCATTTGT+AGG - chr1.3:23046334-23046353 MS.gene99511:intron 30.0%
!! GTGTTTTATTATCCATTTGC+AGG - chr1.3:23043925-23043944 MS.gene99511:CDS 30.0%
!!! CGAAATTGGATTGTTTTTGT+TGG + chr1.3:23046676-23046695 None:intergenic 30.0%
AAAAATGCTAAAGGAGAGGA+AGG - chr1.3:23047139-23047158 MS.gene99511:CDS 35.0%
AAAAGTAGCTCATCCAAACA+AGG + chr1.3:23044075-23044094 None:intergenic 35.0%
AAATGATTCAAGTGAGGTCA+AGG + chr1.3:23045173-23045192 None:intergenic 35.0%
AACATTAACGACCCTACTAT+TGG - chr1.3:23047238-23047257 MS.gene99511:CDS 35.0%
AACTAATGGAAAATCCGTTG+GGG - chr1.3:23046870-23046889 MS.gene99511:CDS 35.0%
AAGTATGATCCAAATATGGC+AGG - chr1.3:23043856-23043875 MS.gene99511:CDS 35.0%
AATACCTGAATCACCAACAA+TGG + chr1.3:23044132-23044151 None:intergenic 35.0%
AATGATTCAAGTGAGGTCAA+GGG + chr1.3:23045172-23045191 None:intergenic 35.0%
AATTATCCCCTTAGATGACA+TGG - chr1.3:23046586-23046605 MS.gene99511:intron 35.0%
AGACACACACTAGAGTTAAA+AGG + chr1.3:23045372-23045391 None:intergenic 35.0%
AGTATGATCCAAATATGGCA+GGG - chr1.3:23043857-23043876 MS.gene99511:CDS 35.0%
ATATAAAAGCTAGCAACACC+AGG + chr1.3:23047112-23047131 None:intergenic 35.0%
CACTGTGAATGATAGAGATT+GGG + chr1.3:23043716-23043735 None:intergenic 35.0%
CATGTTAAGCAACCCAAAAA+TGG + chr1.3:23044648-23044667 None:intergenic 35.0%
CTACACAAATGATTCAAGTG+AGG + chr1.3:23045179-23045198 None:intergenic 35.0%
CTCACTTGAATCATTTGTGT+AGG - chr1.3:23045177-23045196 MS.gene99511:intron 35.0%
CTTCTAACCACAGTAAAATG+TGG + chr1.3:23046986-23047005 None:intergenic 35.0%
GAAACTAATGGAAAATCCGT+TGG - chr1.3:23046868-23046887 MS.gene99511:CDS 35.0%
GAATGAACCTTCAATCTTAC+CGG - chr1.3:23046472-23046491 MS.gene99511:intron 35.0%
GCATTCAGTTGCAGATTTAA+TGG - chr1.3:23046946-23046965 MS.gene99511:CDS 35.0%
GGATTTGGAGATGTTGAATT+TGG - chr1.3:23047034-23047053 MS.gene99511:CDS 35.0%
TAAGGGGATAATTGTTCCTT+TGG + chr1.3:23046579-23046598 None:intergenic 35.0%
TCACTGTGAATGATAGAGAT+TGG + chr1.3:23043717-23043736 None:intergenic 35.0%
TGGAGATGTTGAATTTGGTT+GGG - chr1.3:23047039-23047058 MS.gene99511:CDS 35.0%
TTGAGGGTCTTACAAATTCA+GGG + chr1.3:23043750-23043769 None:intergenic 35.0%
TTGGAGATGTTGAATTTGGT+TGG - chr1.3:23047038-23047057 MS.gene99511:CDS 35.0%
TTTAATCCACCGTTACCAAA+TGG - chr1.3:23046797-23046816 MS.gene99511:intron 35.0%
TTTGAAAACGTAACCCTTCT+TGG + chr1.3:23043816-23043835 None:intergenic 35.0%
TTTGAGGGTCTTACAAATTC+AGG + chr1.3:23043751-23043770 None:intergenic 35.0%
TTTGTAAATGACACAAGTGG+AGG - chr1.3:23045038-23045057 MS.gene99511:intron 35.0%
! CTAGTTAGATTTTGGACTCA+TGG - chr1.3:23044448-23044467 MS.gene99511:CDS 35.0%
! GATAATTGTTCCTTTGGTGT+CGG + chr1.3:23046573-23046592 None:intergenic 35.0%
! TCTTGTTTCGTAGAAAGAGT+GGG - chr1.3:23045302-23045321 MS.gene99511:intron 35.0%
! TGCAAGACACTTTTATTCCT+AGG + chr1.3:23044709-23044728 None:intergenic 35.0%
! TTCTTGTTTCGTAGAAAGAG+TGG - chr1.3:23045301-23045320 MS.gene99511:intron 35.0%
!! ATAATTGTTCCTTTGGTGTC+GGG + chr1.3:23046572-23046591 None:intergenic 35.0%
!! ATGGTGGATTGTAATGATGA+AGG - chr1.3:23043979-23043998 MS.gene99511:CDS 35.0%
!!! ATTGTTTTTGTTGGTGAGGT+GGG + chr1.3:23046667-23046686 None:intergenic 35.0%
!!! CTTTTAAGATCAGATACGTG+TGG + chr1.3:23045262-23045281 None:intergenic 35.0%
!!! TCATGAGGTGTTTGTTTTGA+GGG + chr1.3:23043766-23043785 None:intergenic 35.0%
!!! TGAAGGTGTTTTGTTCATTG+AGG - chr1.3:23043996-23044015 MS.gene99511:CDS 35.0%
!!! TTCATGAGGTGTTTGTTTTG+AGG + chr1.3:23043767-23043786 None:intergenic 35.0%
!!! TTGGATTGTTTTTGTTGGTG+AGG + chr1.3:23046671-23046690 None:intergenic 35.0%
AACCTTCAATCTTACCGGTA+TGG - chr1.3:23046477-23046496 MS.gene99511:intron 40.0%
AATCTTACCGGTATGGCATA+GGG - chr1.3:23046484-23046503 MS.gene99511:intron 40.0%
ACCGAAGAAAAAAGAGCGAT+GGG + chr1.3:23046612-23046631 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr1.3:23045513-23045532 MS.gene99511:intron 40.0%
AGCTCATCCAAACAAGGAAA+AGG + chr1.3:23044069-23044088 None:intergenic 40.0%
AGTGCTTAACTCTCCATTGT+TGG - chr1.3:23044116-23044135 MS.gene99511:CDS 40.0%
ATCCATTTGCAGGTAGGTTA+AGG - chr1.3:23043935-23043954 MS.gene99511:CDS 40.0%
ATCTGTATTGTCAATGCTCG+TGG - chr1.3:23046770-23046789 MS.gene99511:intron 40.0%
ATTAACGACCCTACTATTGG+TGG - chr1.3:23047241-23047260 MS.gene99511:CDS 40.0%
CAAGTGTATGTTCGGATTTG+CGG + chr1.3:23044246-23044265 None:intergenic 40.0%
CACAGCAAGTGTTTCATTTG+TGG - chr1.3:23046258-23046277 MS.gene99511:intron 40.0%
CAGACATAGATGACCAAGAA+GGG - chr1.3:23043800-23043819 MS.gene99511:CDS 40.0%
CCGTAGTAACCATTTGGTAA+CGG + chr1.3:23046809-23046828 None:intergenic 40.0%
CCGTTACCAAATGGTTACTA+CGG - chr1.3:23046806-23046825 MS.gene99511:intron 40.0%
CGCTCATTGTATGGTTTAGA+CGG + chr1.3:23046397-23046416 None:intergenic 40.0%
CTCTATCATTCACAGTGAAG+AGG - chr1.3:23043719-23043738 MS.gene99511:CDS 40.0%
GAGATGTTGAATTTGGTTGG+GGG - chr1.3:23047041-23047060 MS.gene99511:CDS 40.0%
GCATTACCGTAGTAACCATT+TGG + chr1.3:23046815-23046834 None:intergenic 40.0%
GCCTTAGGTGAAATTTCTTG+CGG - chr1.3:23046446-23046465 MS.gene99511:intron 40.0%
GGAGATGTTGAATTTGGTTG+GGG - chr1.3:23047040-23047059 MS.gene99511:CDS 40.0%
GGATCAAGCTATTACATGGT+TGG - chr1.3:23045686-23045705 MS.gene99511:intron 40.0%
TCACGGATCAAGCTATTACA+TGG - chr1.3:23045682-23045701 MS.gene99511:intron 40.0%
TCAGACATAGATGACCAAGA+AGG - chr1.3:23043799-23043818 MS.gene99511:CDS 40.0%
TCATCCAAACAAGGAAAAGG+AGG + chr1.3:23044066-23044085 None:intergenic 40.0%
TCCATTTGCAGGTAGGTTAA+GGG - chr1.3:23043936-23043955 MS.gene99511:CDS 40.0%
TCCGCAAGAAATTTCACCTA+AGG + chr1.3:23046450-23046469 None:intergenic 40.0%
TGAGACGTGTTACCTACAAA+TGG + chr1.3:23046349-23046368 None:intergenic 40.0%
TGAGGGTCTTACAAATTCAG+GGG + chr1.3:23043749-23043768 None:intergenic 40.0%
TTAAGATCAGATACGTGTGG+TGG + chr1.3:23045259-23045278 None:intergenic 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG - chr1.3:23044059-23044078 MS.gene99511:CDS 40.0%
! TTAAGCACTTCTGAAGAACC+AGG + chr1.3:23044105-23044124 None:intergenic 40.0%
!! ATTTTCCATTAGTTTCCCGG+CGG + chr1.3:23046864-23046883 None:intergenic 40.0%
!! CGGATTTTCCATTAGTTTCC+CGG + chr1.3:23046867-23046886 None:intergenic 40.0%
!! GTCATGTTAACTTGTGCCTT+GGG + chr1.3:23044674-23044693 None:intergenic 40.0%
!! GTTTTGGACCACCAATAGTA+GGG + chr1.3:23047252-23047271 None:intergenic 40.0%
!! TAGTAACCATTTGGTAACGG+TGG + chr1.3:23046806-23046825 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCTTG+GGG + chr1.3:23044673-23044692 None:intergenic 40.0%
!!! GAGCTACTTTTTGATGTTCC+TGG - chr1.3:23044084-23044103 MS.gene99511:CDS 40.0%
!!! GATTGTTTTTGTTGGTGAGG+TGG + chr1.3:23046668-23046687 None:intergenic 40.0%
AACTCTAGTGCATACCCCAA+CGG + chr1.3:23046887-23046906 None:intergenic 45.0%
AGGTCCTGACAGGAAACTTA+TGG - chr1.3:23043960-23043979 MS.gene99511:CDS 45.0%
ATAGGGAGCTTCTAAACGCA+AGG - chr1.3:23046501-23046520 MS.gene99511:intron 45.0%
CAATCTTACCGGTATGGCAT+AGG - chr1.3:23046483-23046502 MS.gene99511:intron 45.0%
CGAGTATATGTTGGGATGAG+TGG + chr1.3:23044292-23044311 None:intergenic 45.0%
CGATGAGTGCATGTTACTCT+TGG + chr1.3:23046533-23046552 None:intergenic 45.0%
CTCTTTGACGAACTTCTCCA+TGG + chr1.3:23047197-23047216 None:intergenic 45.0%
GACCGAAGAAAAAAGAGCGA+TGG + chr1.3:23046613-23046632 None:intergenic 45.0%
GCTTGAGCTGGTAAACAAAG+TGG + chr1.3:23047175-23047194 None:intergenic 45.0%
GTCCAATTCATGAGTGCCTT+AGG - chr1.3:23046431-23046450 MS.gene99511:intron 45.0%
GTTGGGGGAAAGCTGTATAT+GGG - chr1.3:23047056-23047075 MS.gene99511:CDS 45.0%
GTTTCGTAGAAAGAGTGGGT+GGG - chr1.3:23045306-23045325 MS.gene99511:intron 45.0%
TAGGGAGCTTCTAAACGCAA+GGG - chr1.3:23046502-23046521 MS.gene99511:intron 45.0%
TAGGTAACACGTCTCAAGTG+TGG - chr1.3:23046353-23046372 MS.gene99511:intron 45.0%
TCCACCATAAGTTTCCTGTC+AGG + chr1.3:23043967-23043986 None:intergenic 45.0%
TCCCTTAACCTACCTGCAAA+TGG + chr1.3:23043940-23043959 None:intergenic 45.0%
TCCTGACAGGAAACTTATGG+TGG - chr1.3:23043963-23043982 MS.gene99511:CDS 45.0%
TGAGTGCATGTTACTCTTGG+TGG + chr1.3:23046530-23046549 None:intergenic 45.0%
TGCCATACCGGTAAGATTGA+AGG + chr1.3:23046482-23046501 None:intergenic 45.0%
TGCGGTGAGGATTTCGAAAT+TGG + chr1.3:23046690-23046709 None:intergenic 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG - chr1.3:23047144-23047163 MS.gene99511:CDS 45.0%
TGTTTCGTAGAAAGAGTGGG+TGG - chr1.3:23045305-23045324 MS.gene99511:intron 45.0%
TTGGGGGAAAGCTGTATATG+GGG - chr1.3:23047057-23047076 MS.gene99511:CDS 45.0%
TTGTTTACCAGCTCAAGCCA+TGG - chr1.3:23047177-23047196 MS.gene99511:CDS 45.0%
TTTGCAGGTAGGTTAAGGGA+AGG - chr1.3:23043940-23043959 MS.gene99511:CDS 45.0%
! CACCTAAGGCACTCATGAAT+TGG + chr1.3:23046436-23046455 None:intergenic 45.0%
! GGGTAGACCACATTTTACTG+TGG - chr1.3:23046976-23046995 MS.gene99511:CDS 45.0%
!! CTCTCCATTGTTGGTGATTC+AGG - chr1.3:23044125-23044144 MS.gene99511:CDS 45.0%
!! GGTCATGTTAACTTGTGCCT+TGG + chr1.3:23044675-23044694 None:intergenic 45.0%
!!! GCCCATCGCTCTTTTTTCTT+CGG - chr1.3:23046608-23046627 MS.gene99511:intron 45.0%
!!! GGTTTTGGACCACCAATAGT+AGG + chr1.3:23047253-23047272 None:intergenic 45.0%
!!! TTTTTTCTTCGGTCCAACCG+AGG - chr1.3:23046619-23046638 MS.gene99511:intron 45.0%
!! ACAAAAATTAAATTAAAAAT+AGG - chr1.3:23046107-23046126 MS.gene99511:intron 5.0%
!! CAAAAATTAAATTAAAAATA+GGG - chr1.3:23046108-23046127 MS.gene99511:intron 5.0%
!!! AAAAAATTCTAATTTTTTTT+AGG - chr1.3:23046034-23046053 MS.gene99511:intron 5.0%
!!! TATAATATTTTTAATTTTTC+TGG + chr1.3:23045910-23045929 None:intergenic 5.0%
AAATCCTCACCGCATGCCTT+TGG - chr1.3:23046696-23046715 MS.gene99511:intron 50.0%
AACTTCTCCATGGCTTGAGC+TGG + chr1.3:23047187-23047206 None:intergenic 50.0%
AGAAGCTCCCTATGCCATAC+CGG + chr1.3:23046494-23046513 None:intergenic 50.0%
CGAACTTCTTCGTCAGTGTC+TGG + chr1.3:23046746-23046765 None:intergenic 50.0%
CGATGGGCCATGTCATCTAA+GGG + chr1.3:23046596-23046615 None:intergenic 50.0%
CGATTGTACGACAACGCCAA+AGG + chr1.3:23046715-23046734 None:intergenic 50.0%
GAACAAGTTCCCGACACCAA+AGG - chr1.3:23046560-23046579 MS.gene99511:intron 50.0%
GATGGGCCATGTCATCTAAG+GGG + chr1.3:23046595-23046614 None:intergenic 50.0%
GATGTGACACGTGCTGGATT+TGG - chr1.3:23047019-23047038 MS.gene99511:CDS 50.0%
GGGTCTTTCCCTGCCATATT+TGG + chr1.3:23043868-23043887 None:intergenic 50.0%
GGTTGGGGGAAAGCTGTATA+TGG - chr1.3:23047055-23047074 MS.gene99511:CDS 50.0%
GTAACACGTCTCAAGTGTGG+TGG - chr1.3:23046356-23046375 MS.gene99511:intron 50.0%
GTATATGGGGGACCAGCTAA+AGG - chr1.3:23047070-23047089 MS.gene99511:CDS 50.0%
GTATCTGATGTGACACGTGC+TGG - chr1.3:23047013-23047032 MS.gene99511:CDS 50.0%
GTTGCTTAACATGTGCCCCA+AGG - chr1.3:23044655-23044674 MS.gene99511:intron 50.0%
TACAACCGCCGGGAAACTAA+TGG - chr1.3:23046856-23046875 MS.gene99511:intron 50.0%
TGGGGGAAAGCTGTATATGG+GGG - chr1.3:23047058-23047077 MS.gene99511:CDS 50.0%
! TGAGGTCAAGGGTGTGTTTG+AGG + chr1.3:23045161-23045180 None:intergenic 50.0%
! TGCTTTTGCATTTCCCGTCG+CGG - chr1.3:23046832-23046851 MS.gene99511:intron 50.0%
AATGAGCGACGCAGCAGGTT+TGG - chr1.3:23046409-23046428 MS.gene99511:intron 55.0%
AGCGCGAATTGTGGCTACCT+CGG + chr1.3:23046639-23046658 None:intergenic 55.0%
CATACAATGAGCGACGCAGC+AGG - chr1.3:23046404-23046423 MS.gene99511:intron 55.0%
CGAATTGTGGCTACCTCGGT+TGG + chr1.3:23046635-23046654 None:intergenic 55.0%
CTGCTGCGTCGCTCATTGTA+TGG + chr1.3:23046406-23046425 None:intergenic 55.0%
GCACCAACTCCTCCTTTAGC+TGG + chr1.3:23047085-23047104 None:intergenic 55.0%
GCGATGGGCCATGTCATCTA+AGG + chr1.3:23046597-23046616 None:intergenic 55.0%
GGACCAGCTAAAGGAGGAGT+TGG - chr1.3:23047079-23047098 MS.gene99511:CDS 55.0%
GGTTAAGGGAAGGTCCTGAC+AGG - chr1.3:23043950-23043969 MS.gene99511:CDS 55.0%
TATGGGGGACCAGCTAAAGG+AGG - chr1.3:23047073-23047092 MS.gene99511:CDS 55.0%
! ACGACAACGCCAAAGGCATG+CGG + chr1.3:23046708-23046727 None:intergenic 55.0%
! TGGGAGAAGAGCGCGAATTG+TGG + chr1.3:23046648-23046667 None:intergenic 55.0%
!! GGAGGAGTTGGTGCTATACC+TGG - chr1.3:23047091-23047110 MS.gene99511:CDS 55.0%
! AACGCCAAAGGCATGCGGTG+AGG + chr1.3:23046703-23046722 None:intergenic 60.0%
CCCGGCGGTTGTAACCGCGA+CGG + chr1.3:23046849-23046868 None:intergenic 70.0%
CCCGTCGCGGTTACAACCGC+CGG - chr1.3:23046845-23046864 MS.gene99511:intron 70.0%
CCGGCGGTTGTAACCGCGAC+GGG + chr1.3:23046848-23046867 None:intergenic 70.0%
CCGTCGCGGTTACAACCGCC+GGG - chr1.3:23046846-23046865 MS.gene99511:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 23043709 23047297 23043709 ID=MS.gene99511
chr1.3 mRNA 23043709 23047297 23043709 ID=MS.gene99511.t1;Parent=MS.gene99511
chr1.3 exon 23046860 23047297 23046860 ID=MS.gene99511.t1.exon1;Parent=MS.gene99511.t1
chr1.3 CDS 23046860 23047297 23046860 ID=cds.MS.gene99511.t1;Parent=MS.gene99511.t1
chr1.3 exon 23043709 23044650 23043709 ID=MS.gene99511.t1.exon2;Parent=MS.gene99511.t1
chr1.3 CDS 23043709 23044650 23043709 ID=cds.MS.gene99511.t1;Parent=MS.gene99511.t1
Gene Sequence

>MS.gene99511

ATGGCCCAATCTCTATCATTCACAGTGAAGAGGCATGCCCCTGAATTTGTAAGACCCTCAAAACAAACACCTCATGAAGTAAAATTACTTTCAGACATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGGTTAAGGGAAGGTCCTGACAGGAAACTTATGGTGGATTGTAATGATGAAGGTGTTTTGTTCATTGAGGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTGTTTGGATGAGCTACTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAACTCTCCATTGTTGGTGATTCAGGTATTGTATTGATGTTCTTAATGCATAGTTATTTTGACAAAGCTATACTTTATATTTCACAAATTTACAGTGGTTCATCTTGATTTTTCAATTTCACCGCAAATCCGAACATACACTTGTACTATATGATATTTCAATTTCACCACTCATCCCAACATATACTCGTACTATATTAAGGATCCGTTAATTTTTCAAAAGAAATAGATAACTTTATATTATGGATTATTTGAAAGACTTTCAAGTCAATAAATATATATAAAATTAATAGACTACATGATTATAAAAATAATTAATTATTCAACTAGTTAGATTTTGGACTCATGGAAGAAGTTAGACTTTCACATCATATTGAAACAATATTTAAAGGGAAATGTTAACTTGTGCCCTCAAGATACAAGTTAATGATTCAAAATAGAAATATTCGACTGTAATTAATGCATTTGATTTTAATTTTTTTACTTTTCAATAATAGAATGCACAAAATTTAAGAAAATGTTTCCATTTTTGGGTTGCTTAACATGTGCCCCAAGGCACAAGTTAACATGACCCATATTTAAATCCTAGGAATAAAAGTGTCTTGCATTTAGTGTTTCTATCGAATAGAATCTTAGGAAACCAAAATAATAACCTAAAATAATTTTTTTAGGAAACACAAAATAATTGGTTATTCACAATTATTATTAAGAATATCGTTTAAAAGTTCAAATTTGTTATTTATATTAGCTACCATCTTATTTAATTGCATAAAAAGTGGACATTTAATTTGAAAATATGAATATTAAATTAAAGACATCTTTAATACATTATCACTTTTCATTTTTTTGGGGGAAACTTACATGTAAATTTGTAAATGGTACATATATGTTTTTAAAGGTATAAATGACACATAGATTTGTAAATGACACAAGTGGAGGATGAAGAGATAGCATTAGTGAAAATTTGCAACCTGTAGTTCAAGCACAAATATATTTTTTTGGATCAAGATTATTTTTATTGATGCTGCGTAGAATTCCTCAAACACACCCTTGACCTCACTTGAATCATTTGTGTAGGTTAAAATATACTTTTTCTTTTATCTTGAACAAAAAAAATTAATTCAGCTGAGGATACCACCACACGTATCTGATCTTAAAAGTATGTTTGCAATAACTTTATTCTTGTTTCGTAGAAAGAGTGGGTGGGACCAAAATGTGTTGTTACAATCAATCAATTAATACTTGTTCCTTTTAACTCTAGTGTGTGTCTCAATTTTAAAAATGAAATGTTCATTTGTTATATCTTTTAGTAATGATATTTTGACATCCATTTGATGACAACTTTGTTGACAACTTTATTTTTCTCACTTTTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAACATCATGTGAGTATGAGAGAGAAAATTGTCCAAAAGTTGTCAAAAAATGGTTGTCAAAATATCATTTCTCATCTTTCTTTTAGCTGACTTTTATTCATCGTTTAATTAGAATGAATCACAATTAGACAAAATTTATACATCACGGATCAAGCTATTACATGGTTGGTATGAAGTCAATGTCTTATCTCATATTGTTTTTAGGGTTAAATATGTTTTTGGTCCATATAAATATGTCAACTTTTCGTTTTAATCCCTCTAAAATTTTCCTTCAACTTTTAGTCCCTATAAAATTTTCAATCTTCACTTTTGGTCTCTCTTTTAATGTAAATTCATATGTAGAATTCATATAATTTAATAAAATTTTCCAGAAAAATTAAAAATATTATAAGAATCACTCCAAAAAAAATCAGAATTTTTTAACAAAACATGAATTTAATATGAATTTTTATATCTTTTAAGGTTAAAAATTCATATTTAATTTGTGTTTTGTTAAAAAATTCTAATTTTTTTTAGGAAATTTATTCAGAATATTCTACACATTTCTGCACAATTTCATTGAAAAATACAAAAATTAAATTAAAAATAGGGACCAAAAGTAGTGATTGAAAATTTTATAGGGACTAAAAGTTGAAGGAAAATTTTAGAGGGACTAAAACGAAAAGTTGACATATTTATAGGGACTAAAAACATATTTAACCCTTGTTTTTATAACAATCACAGCAAGTGTTTCATTTGTGGTCCAATTTTAACTAATTAATTCATGAAAATAAAATTATTCATTCATTCACATACTTGAATTTTGACCATTTGTAGGTAACACGTCTCAAGTGTGGTGGTTTCATTTTTGCTCTCCGTCTAAACCATACAATGAGCGACGCAGCAGGTTTGGTCCAATTCATGAGTGCCTTAGGTGAAATTTCTTGCGGAATGAATGAACCTTCAATCTTACCGGTATGGCATAGGGAGCTTCTAAACGCAAGGGATCCACCAAGAGTAACATGCACTCATCGTGAATATGAACAAGTTCCCGACACCAAAGGAACAATTATCCCCTTAGATGACATGGCCCATCGCTCTTTTTTCTTCGGTCCAACCGAGGTAGCCACAATTCGCGCTCTTCTCCCACCTCACCAACAAAAACAATCCAATTTCGAAATCCTCACCGCATGCCTTTGGCGTTGTCGTACAATCGCGTTACAACCAGACACTGACGAAGAAGTTCGCATAATCTGTATTGTCAATGCTCGTGGCAAGTTTAATCCACCGTTACCAAATGGTTACTACGGTAATGCTTTTGCATTTCCCGTCGCGGTTACAACCGCCGGGAAACTAATGGAAAATCCGTTGGGGTATGCACTAGAGTTAGTTAAAAAAGCAAAATCTGATGTAACTCAAGAATACATGCATTCAGTTGCAGATTTAATGGTTATCAAGGGTAGACCACATTTTACTGTGGTTAGAAGTTATCTTGTATCTGATGTGACACGTGCTGGATTTGGAGATGTTGAATTTGGTTGGGGGAAAGCTGTATATGGGGGACCAGCTAAAGGAGGAGTTGGTGCTATACCTGGTGTTGCTAGCTTTTATATACCTTTCAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCACTTTGTTTACCAGCTCAAGCCATGGAGAAGTTCGTCAAAGAGTTAGATAGTGTGCTTAAGAACAACATTAACGACCCTACTATTGGTGGTCCAAAACCTAGTTTCATTGTTTCTTCCTTGTAG
Protein sequence

>MS.gene99511.t1

MAQSLSFTVKRHAPEFVRPSKQTPHEVKLLSDIDDQEGLRFQIPVIQFYKYDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLREGPDRKLMVDCNDEGVLFIEADADVSLKEFGDALQPPFPCLDELLFDVPGSSEVLNSPLLVIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMSALGEISCGMNEPSILPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVATIRALLPPHQQKQSNFEILTACLWRCRTIALQPDTDEEVRIICIVNARGKFNPPLPNGYYGNAFAFPVAVTTAGKLMENPLGYALELVKKAKSDVTQEYMHSVADLMVIKGRPHFTVVRSYLVSDVTRAGFGDVEFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPLCLPAQAMEKFVKELDSVLKNNINDPTIGGPKPSFIVSSL