AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99514

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99514.t1 MTR_1g040315 86.603 418 54 2 1 417 1 417 0.0 736
MS.gene99514.t1 MTR_1g040195 69.631 461 71 7 1 417 1 436 0.0 615
MS.gene99514.t1 MTR_1g040215 66.017 462 111 6 1 417 1 461 0.0 602
MS.gene99514.t1 MTR_1g040175 61.605 461 130 6 1 417 1 458 0.0 551
MS.gene99514.t1 MTR_1g040320 59.436 461 107 6 1 417 1 425 4.01e-179 506
MS.gene99514.t1 MTR_5g076700 53.030 462 161 10 5 417 6 460 4.14e-158 454
MS.gene99514.t1 MTR_7g114470 50.972 463 170 9 5 417 7 462 2.20e-152 439
MS.gene99514.t1 MTR_7g114560 50.325 461 174 10 5 417 6 459 6.30e-152 438
MS.gene99514.t1 MTR_7g114550 50.111 451 172 9 2 404 3 448 3.07e-149 431
MS.gene99514.t1 MTR_1g081660 52.252 444 162 10 4 401 13 452 6.54e-146 422
MS.gene99514.t1 MTR_7g114520 49.455 459 183 8 5 417 7 462 1.77e-145 422
MS.gene99514.t1 MTR_7g114490 49.535 430 170 7 5 389 6 433 2.07e-139 408
MS.gene99514.t1 MTR_0042s0190 55.556 297 87 5 166 417 1 297 2.67e-104 311
MS.gene99514.t1 MTR_0502s0010 58.222 225 82 6 101 317 1 221 4.59e-83 254
MS.gene99514.t1 MTR_0042s0230 79.730 148 29 1 1 148 1 147 3.34e-79 241
MS.gene99514.t1 MTR_7g114510 44.164 317 126 9 148 417 8 320 3.44e-73 232
MS.gene99514.t1 MTR_0042s0190 53.509 228 61 5 235 417 5 232 1.29e-70 222
MS.gene99514.t1 MTR_8g039950 78.295 129 27 1 1 129 1 128 1.42e-68 213
MS.gene99514.t1 MTR_7g114420 42.857 301 90 10 166 417 1 268 6.55e-62 201
MS.gene99514.t1 MTR_7g114500 58.784 148 60 1 5 152 6 152 4.16e-58 187
MS.gene99514.t1 MTR_8g096530 29.372 446 256 15 1 400 1 433 4.95e-56 191
MS.gene99514.t1 MTR_3g098980 29.567 416 241 11 17 389 22 428 7.06e-54 185
MS.gene99514.t1 MTR_3g051790 59.184 147 59 1 2 148 6 151 5.15e-53 175
MS.gene99514.t1 MTR_7g027175 31.579 380 212 10 16 353 23 396 1.60e-52 182
MS.gene99514.t1 MTR_4g055170 27.594 453 258 12 4 394 9 453 7.07e-43 156
MS.gene99514.t1 MTR_2g105330 27.335 439 255 15 5 391 1 427 1.36e-40 149
MS.gene99514.t1 MTR_1g053315 29.025 441 250 17 17 397 26 463 3.21e-40 149
MS.gene99514.t1 MTR_3g035000 40.000 240 74 7 196 388 39 255 1.51e-39 144
MS.gene99514.t1 MTR_2g064495 27.400 427 248 14 17 391 11 427 3.80e-39 145
MS.gene99514.t1 MTR_7g110610 28.103 427 205 14 5 388 1 368 1.67e-37 140
MS.gene99514.t1 MTR_8g075610 27.982 436 234 16 17 393 2 416 4.38e-37 140
MS.gene99514.t1 MTR_4g007540 27.295 403 228 13 42 389 34 426 4.04e-35 135
MS.gene99514.t1 MTR_3g112180 28.021 389 224 11 17 358 20 399 2.28e-34 133
MS.gene99514.t1 MTR_3g071320 27.500 440 253 18 8 392 6 434 2.76e-29 118
MS.gene99514.t1 MTR_3g465910 27.528 356 220 15 7 338 8 349 2.86e-28 117
MS.gene99514.t1 MTR_7g085930 29.338 317 183 12 17 304 14 318 4.65e-28 115
MS.gene99514.t1 MTR_3g465930 27.528 356 223 14 7 338 8 352 9.81e-28 114
MS.gene99514.t1 MTR_4g088765 67.901 81 23 2 1 79 1 80 1.44e-27 106
MS.gene99514.t1 MTR_3g465980 26.964 471 244 21 5 396 8 457 2.58e-27 113
MS.gene99514.t1 MTR_3g465990 27.746 346 212 12 4 325 7 338 3.52e-27 113
MS.gene99514.t1 MTR_7g084910 26.862 376 238 11 8 353 16 384 8.02e-27 111
MS.gene99514.t1 MTR_7g084940 25.000 392 245 10 5 353 12 397 8.39e-27 112
MS.gene99514.t1 MTR_2g015430 27.273 440 262 18 6 393 1 434 1.51e-26 111
MS.gene99514.t1 MTR_4g013050 25.874 429 224 11 17 389 12 402 1.07e-25 108
MS.gene99514.t1 MTR_7g085990 28.076 317 187 11 17 304 10 314 1.54e-25 108
MS.gene99514.t1 MTR_6g053810 26.606 327 206 13 3 305 5 321 1.87e-25 108
MS.gene99514.t1 MTR_7g086000 27.456 397 199 19 62 381 57 441 4.90e-25 107
MS.gene99514.t1 MTR_3g465950 27.042 355 226 12 7 338 8 352 4.91e-24 103
MS.gene99514.t1 MTR_7g056087 24.932 365 240 12 17 355 12 368 7.17e-23 100
MS.gene99514.t1 MTR_4g127650 25.926 324 216 10 8 315 9 324 9.60e-23 100
MS.gene99514.t1 MTR_3g465880 29.882 338 200 14 16 326 17 344 1.33e-22 99.8
MS.gene99514.t1 MTR_3g026950 23.472 409 233 14 17 354 10 409 2.60e-22 99.0
MS.gene99514.t1 MTR_4g097090 24.478 335 222 9 1 315 1 324 4.40e-21 95.5
MS.gene99514.t1 MTR_3g465870 26.107 429 266 17 5 396 8 422 5.96e-21 94.7
MS.gene99514.t1 MTR_8g079980 23.756 442 249 18 15 394 9 424 3.21e-20 92.4
MS.gene99514.t1 MTR_8g467580 24.009 429 239 16 14 376 8 415 6.70e-19 88.6
MS.gene99514.t1 MTR_8g467590 24.074 432 239 18 12 376 6 415 1.49e-18 87.8
MS.gene99514.t1 MTR_3g049150 23.192 401 236 14 17 352 10 403 1.76e-18 87.4
MS.gene99514.t1 MTR_5g084870 22.120 434 261 16 15 394 9 419 2.83e-18 86.7
MS.gene99514.t1 MTR_8g079970 25.940 266 172 10 15 270 9 259 5.03e-18 85.9
MS.gene99514.t1 MTR_7g114417 67.308 52 16 1 90 140 29 80 2.19e-17 77.0
MS.gene99514.t1 MTR_5g084850 21.889 434 261 16 15 394 9 418 2.29e-17 84.0
MS.gene99514.t1 MTR_5g090880 25.758 396 199 16 62 384 64 437 3.59e-17 83.6
MS.gene99514.t1 MTR_3g086020 24.074 432 243 19 15 394 11 409 4.86e-17 82.8
MS.gene99514.t1 MTR_8g079950 30.769 182 105 7 15 188 9 177 1.00e-16 82.0
MS.gene99514.t1 MTR_7g026860 25.708 424 233 18 23 387 25 425 3.36e-16 80.5
MS.gene99514.t1 MTR_5g090830 24.810 395 203 15 62 384 63 435 1.30e-15 79.0
MS.gene99514.t1 MTR_1g094790 24.631 406 227 16 15 357 9 398 2.37e-15 78.2
MS.gene99514.t1 MTR_5g090810 24.372 398 201 16 62 384 63 435 4.26e-15 77.4
MS.gene99514.t1 MTR_3g450690 28.829 222 125 7 65 269 72 277 5.33e-15 77.0
MS.gene99514.t1 MTR_3g101930 28.080 349 197 18 1 314 2 331 5.61e-15 77.0
MS.gene99514.t1 MTR_3g450710 27.338 278 153 11 65 309 65 326 2.09e-14 75.1
MS.gene99514.t1 MTR_4g094842 26.214 309 183 14 23 306 28 316 8.69e-14 73.2
MS.gene99514.t1 MTR_4g094828 31.977 172 106 5 60 223 54 222 2.26e-13 72.0
MS.gene99514.t1 MTR_0190s0020 26.689 296 186 12 23 304 30 308 2.64e-13 71.6
MS.gene99514.t1 MTR_4g022760 28.125 320 164 15 23 308 25 312 3.45e-13 71.2
MS.gene99514.t1 MTR_4g022720 26.645 304 183 14 23 308 25 306 5.40e-13 70.9
MS.gene99514.t1 MTR_8g079710 26.291 426 230 18 23 387 30 432 6.78e-13 70.5
MS.gene99514.t1 MTR_4g022800 27.554 323 162 15 23 308 25 312 7.28e-13 70.5
MS.gene99514.t1 MTR_4g094838 24.752 303 174 14 23 304 29 298 2.45e-11 65.5
MS.gene99514.t1 MTR_2g007880 22.397 317 208 10 17 318 25 318 2.55e-11 65.5
MS.gene99514.t1 MTR_3g102010 25.617 324 205 15 16 314 14 326 7.30e-11 64.3
MS.gene99514.t1 MTR_3g051820 42.268 97 42 5 329 417 1 91 9.79e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99514.t1 AT5G17540 50.107 467 177 12 1 417 1 461 5.76e-145 421
MS.gene99514.t1 AT3G03480 49.433 441 171 11 5 398 15 450 8.29e-133 389
MS.gene99514.t1 AT5G41040 31.298 393 216 11 7 353 15 399 8.36e-57 193
MS.gene99514.t1 AT5G41040 31.298 393 216 11 7 353 31 415 8.95e-57 193
MS.gene99514.t1 AT5G63560 30.296 439 247 14 1 394 1 425 1.22e-55 189
MS.gene99514.t1 AT3G48720 28.341 434 260 11 1 391 1 426 1.71e-54 187
MS.gene99514.t1 AT5G48930 27.107 439 257 13 8 393 2 430 2.92e-37 140
MS.gene99514.t1 AT1G27620 27.123 424 241 14 16 389 16 421 2.74e-35 135
MS.gene99514.t1 AT3G62160 27.273 418 234 13 5 370 1 400 4.60e-35 134
MS.gene99514.t1 AT1G65450 27.027 444 255 16 1 389 12 441 1.80e-34 133
MS.gene99514.t1 AT1G03390 30.222 450 224 18 16 393 24 455 3.62e-34 132
MS.gene99514.t1 AT5G57840 25.785 446 256 13 7 391 1 432 3.84e-34 132
MS.gene99514.t1 AT1G28680 26.608 451 251 17 14 398 9 445 4.95e-33 129
MS.gene99514.t1 AT2G19070 24.944 445 257 13 17 393 12 447 9.61e-32 125
MS.gene99514.t1 AT3G47170 27.248 367 220 14 7 338 10 364 1.31e-30 123
MS.gene99514.t1 AT1G28680 30.449 312 182 13 14 304 9 306 2.25e-30 121
MS.gene99514.t1 AT2G23510 24.738 477 247 12 1 396 5 450 6.27e-30 120
MS.gene99514.t1 AT5G07080 30.818 318 188 10 9 306 14 319 1.14e-29 120
MS.gene99514.t1 AT2G40230 27.551 392 214 15 17 352 13 390 1.69e-27 113
MS.gene99514.t1 AT2G25150 24.777 448 273 13 9 398 13 454 2.10e-27 114
MS.gene99514.t1 AT1G31490 29.268 246 143 8 38 269 33 261 2.39e-23 102
MS.gene99514.t1 AT1G78990 26.136 352 181 11 63 352 65 399 5.34e-22 98.2
MS.gene99514.t1 AT1G24430 23.691 401 230 15 44 392 41 417 6.85e-19 88.6
MS.gene99514.t1 AT1G24420 28.617 311 179 12 15 307 11 296 9.17e-19 88.2
MS.gene99514.t1 AT1G24420 28.617 311 179 12 15 307 11 296 9.17e-19 88.2
MS.gene99514.t1 AT1G32910 25.789 380 200 14 63 382 63 420 1.34e-18 88.2
MS.gene99514.t1 AT3G26040 23.557 433 256 16 15 392 9 421 5.66e-18 85.9
MS.gene99514.t1 AT4G15390 26.715 277 176 12 3 270 2 260 4.96e-17 83.2
MS.gene99514.t1 AT4G15390 26.715 277 176 12 3 270 2 260 4.96e-17 83.2
MS.gene99514.t1 AT5G07850 27.809 356 202 16 16 346 15 340 4.67e-16 80.1
MS.gene99514.t1 AT3G30280 30.811 185 113 7 7 185 4 179 8.63e-16 79.3
MS.gene99514.t1 AT4G31910 26.791 321 200 12 25 315 24 339 1.31e-15 79.0
MS.gene99514.t1 AT5G16410 24.855 346 192 12 63 352 89 422 1.01e-14 76.3
MS.gene99514.t1 AT3G50270 25.776 322 181 12 23 314 30 323 2.42e-14 75.1
MS.gene99514.t1 AT5G07860 23.394 436 272 15 15 400 24 447 9.14e-14 73.2
MS.gene99514.t1 AT5G38130 24.874 398 212 17 23 357 48 421 9.89e-12 67.0
MS.gene99514.t1 AT5G07870 24.765 319 218 11 15 316 24 337 1.51e-11 66.2

Find 99 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTCTTTCCCTTCCATATT+TGG 0.169165 1.3:+23127355 None:intergenic
CACTCCATTGCTGCTTATTC+AGG 0.213055 1.3:-23127095 MS.gene99514:intron
GAACATTAACCAACCAACTA+TGG 0.255243 1.3:-23124809 MS.gene99514:CDS
AATGTTACTCTTAAGCAATT+TGG 0.266700 1.3:-23127193 MS.gene99514:CDS
TAAAGGGATAATTGTTTCTT+TGG 0.270402 1.3:+23125341 None:intergenic
GAAATAATGATACTAGGTTT+TGG 0.325240 1.3:+23124781 None:intergenic
TTACAACTATGATCCAAATA+TGG 0.326430 1.3:-23127368 MS.gene99514:CDS
TCACTTTGAATACTAGAGAT+TGG 0.347075 1.3:+23127509 None:intergenic
ATTCTCTGCTCTTTCTTCTT+CGG 0.349771 1.3:-23125309 MS.gene99514:CDS
GAGCTTCTTTATGATGTTCC+TGG 0.351298 1.3:-23127136 MS.gene99514:CDS
CGAACTTCTTCGTCGATGTC+TGG 0.379960 1.3:+23125174 None:intergenic
CACTTTGAATACTAGAGATT+GGG 0.389632 1.3:+23127510 None:intergenic
AAATCCTCACTGCATTCCTT+TGG 0.393738 1.3:-23125221 MS.gene99514:CDS
AGAGAGGTTGATTTCGGTTG+GGG 0.399146 1.3:-23124988 MS.gene99514:CDS
AGCTCATTTATGCAAGGAAA+TGG 0.399245 1.3:+23127154 None:intergenic
TAGAGAGGTTGATTTCGGTT+GGG 0.403875 1.3:-23124989 MS.gene99514:CDS
GGTTGGGGAAAACCTTGTTA+TGG 0.420339 1.3:-23124973 MS.gene99514:CDS
CGATGAGTGCATGTTACTCT+TGG 0.426648 1.3:+23125387 None:intergenic
TGCTAAAGGAGTAGAAGGTT+TGG 0.428539 1.3:-23124899 MS.gene99514:CDS
GATGAGTGATGCTGCTGGTT+TGG 0.433088 1.3:-23125508 MS.gene99514:CDS
ATAATTGTTTCTTTGGTGTC+GGG 0.439179 1.3:+23125348 None:intergenic
AACCTTCAATCTCACCAGTA+TGG 0.441737 1.3:-23125440 MS.gene99514:CDS
CGCCTAAGGCACTCATGAAT+CGG 0.443530 1.3:+23125484 None:intergenic
CAAAATTAGAGTGTTGTTGT+TGG 0.454490 1.3:+23125244 None:intergenic
GTCCGATTCATGAGTGCCTT+AGG 0.459205 1.3:-23125486 MS.gene99514:CDS
TTAGAGAGGTTGATTTCGGT+TGG 0.464104 1.3:-23124990 MS.gene99514:CDS
ATCCATTTGCAGGTAGATTG+AGG 0.464119 1.3:-23127285 MS.gene99514:CDS
TGCCATACTGGTGAGATTGA+AGG 0.466641 1.3:+23125438 None:intergenic
ACTGCAGTTGTAACCGCAGC+AGG 0.466823 1.3:+23125078 None:intergenic
CAGAGAATTGTGGCATGTAA+AGG 0.466829 1.3:+23125324 None:intergenic
GATAATTGTTTCTTTGGTGT+CGG 0.469946 1.3:+23125347 None:intergenic
TCCCTCAATCTACCTGCAAA+TGG 0.471845 1.3:+23127283 None:intergenic
AGTAGAAGGTTTGGTTATAC+CGG 0.475564 1.3:-23124890 MS.gene99514:CDS
TAGTAACCGTTTGGTAAGGA+TGG 0.475825 1.3:+23125120 None:intergenic
TCAACCATTAGTTTCCTACT+AGG 0.478317 1.3:+23127256 None:intergenic
GCTTGAGTTGGCAAACAAAC+CGG 0.482135 1.3:+23124871 None:intergenic
TTTGATACCGTAATCCATCT+TGG 0.486756 1.3:+23127407 None:intergenic
TCCATTTGCAGGTAGATTGA+GGG 0.490878 1.3:-23127284 MS.gene99514:CDS
AGGTCCTAGTAGGAAACTAA+TGG 0.492453 1.3:-23127260 MS.gene99514:CDS
ATGATGACCAAGATGGATTA+CGG 0.494020 1.3:-23127414 MS.gene99514:CDS
TTGCTCTTCGTCTAAACCAT+AGG 0.494992 1.3:-23125530 MS.gene99514:CDS
GATTGAGGGAAGGTCCTAGT+AGG 0.496365 1.3:-23127270 MS.gene99514:CDS
AGAAGCTCTCTATGCCATAC+TGG 0.496898 1.3:+23125426 None:intergenic
AGAGAATTGTGGCATGTAAA+GGG 0.496978 1.3:+23125325 None:intergenic
GTGGTTGATGTTAAACATGC+TGG 0.504572 1.3:-23125015 MS.gene99514:CDS
GACATTGATGATGACCAAGA+TGG 0.508673 1.3:-23127421 MS.gene99514:CDS
TGAGTGCATGTTACTCTTGG+AGG 0.513001 1.3:+23125390 None:intergenic
CAGCAGCATCACTCATCCTA+TGG 0.516343 1.3:+23125514 None:intergenic
ATTAACCCATCCTTACCAAA+CGG 0.518777 1.3:-23125126 MS.gene99514:CDS
TCCTTACCAAACGGTTACTA+CGG 0.519496 1.3:-23125117 MS.gene99514:CDS
TTGTTTGCCAACTCAAGCCA+TGG 0.519556 1.3:-23124866 MS.gene99514:CDS
GCCGTAGTAACCGTTTGGTA+AGG 0.521315 1.3:+23125116 None:intergenic
CCCATGAGATATTTCGCCTA+AGG 0.523720 1.3:+23125470 None:intergenic
AACTATGATCCAAATATGGA+AGG 0.524254 1.3:-23127364 MS.gene99514:CDS
TTGGACCACCCATAGTTGGT+TGG 0.528285 1.3:+23124800 None:intergenic
AAACTAATGGTTGATTGTAA+TGG 0.532473 1.3:-23127247 MS.gene99514:CDS
GTGTTGCCGTAGTAACCGTT+TGG 0.534089 1.3:+23125111 None:intergenic
TAGTTGTAAAATTGTATCAC+AGG 0.535180 1.3:+23127382 None:intergenic
TTAATCACAGCTGAAGAGCC+AGG 0.538884 1.3:+23127118 None:intergenic
GCCTTAGGCGAAATATCTCA+TGG 0.541451 1.3:-23125471 MS.gene99514:CDS
AAGGAAGAAATAATGATACT+AGG 0.541907 1.3:+23124775 None:intergenic
GAAGAAAGAGCAGAGAATTG+TGG 0.542995 1.3:+23125314 None:intergenic
AACCTCTCCATGGCTTGAGT+TGG 0.547625 1.3:+23124859 None:intergenic
GGAGAGGTTCACTAAAGAGT+TGG 0.550504 1.3:-23124845 MS.gene99514:CDS
GAGTGTTGTTGTTGGTGAGG+TGG 0.551701 1.3:+23125252 None:intergenic
ACATTAGTTCAAGGTCTACA+AGG 0.553029 1.3:+23124756 None:intergenic
AACATTAACCAACCAACTAT+GGG 0.553693 1.3:-23124808 MS.gene99514:CDS
ATAGAGAGCTTCTAAACGCA+AGG 0.554177 1.3:-23125416 MS.gene99514:CDS
CTCTTTAGTGAACCTCTCCA+TGG 0.558050 1.3:+23124849 None:intergenic
TATACCTGAATAAGCAGCAA+TGG 0.559109 1.3:+23127091 None:intergenic
GAAACAACTCCTCCTTTAGC+TGG 0.563051 1.3:+23124946 None:intergenic
TGTTATGGAGGACCAGCTAA+AGG 0.564399 1.3:-23124958 MS.gene99514:CDS
CTCTAGTATTCAAAGTGAAG+AGG 0.566253 1.3:-23127504 MS.gene99514:CDS
ACTATGATCCAAATATGGAA+GGG 0.572955 1.3:-23127363 MS.gene99514:CDS
CAATTGTACGACAACGCCAA+AGG 0.577956 1.3:+23125205 None:intergenic
GCGAATTGCAGCTACCTCAG+TGG 0.579537 1.3:+23125284 None:intergenic
TTAGAGTGTTGTTGTTGGTG+AGG 0.580129 1.3:+23125249 None:intergenic
AGTAACCGTTTGGTAAGGAT+GGG 0.580599 1.3:+23125121 None:intergenic
TTAGCTGGTCCTCCATAACA+AGG 0.580970 1.3:+23124961 None:intergenic
CGAATTGCAGCTACCTCAGT+GGG 0.590147 1.3:+23125285 None:intergenic
TGCCAACTCAAGCCATGGAG+AGG 0.591210 1.3:-23124861 MS.gene99514:CDS
TAAAGAAGCTCATTTATGCA+AGG 0.596426 1.3:+23127148 None:intergenic
TGGGGAAAACCTTGTTATGG+AGG 0.615938 1.3:-23124970 MS.gene99514:CDS
GTTCGCATAGTCAACGTGCA+TGG 0.616616 1.3:-23125156 MS.gene99514:CDS
GCTCTCACCACAGTAAAATG+AGG 0.627802 1.3:+23125045 None:intergenic
TCATTTATGCAAGGAAATGG+AGG 0.628587 1.3:+23127157 None:intergenic
TCACCACAGTAAAATGAGGT+CGG 0.638789 1.3:+23125049 None:intergenic
CCTTAGGCGAAATATCTCAT+GGG 0.643188 1.3:-23125470 MS.gene99514:CDS
ATGGTTGATTGTAATGGTGA+AGG 0.645349 1.3:-23127241 MS.gene99514:CDS
GTAACACGTCTTAAGTGCGG+TGG 0.646528 1.3:-23125561 MS.gene99514:CDS
TAGAGAGCTTCTAAACGCAA+GGG 0.655440 1.3:-23125415 MS.gene99514:CDS
ATTAACCAACCAACTATGGG+TGG 0.662304 1.3:-23124805 MS.gene99514:CDS
TTTGCAGGTAGATTGAGGGA+AGG 0.669320 1.3:-23127280 MS.gene99514:CDS
CATAGGATGAGTGATGCTGC+TGG 0.673345 1.3:-23125513 MS.gene99514:CDS
TATGGAGGACCAGCTAAAGG+AGG 0.679087 1.3:-23124955 MS.gene99514:CDS
CAGGTAACACGTCTTAAGTG+CGG 0.702810 1.3:-23125564 MS.gene99514:CDS
AACGCCAAAGGAATGCAGTG+AGG 0.720001 1.3:+23125217 None:intergenic
TTTCTTCTTCGGTCCCACTG+AGG 0.728927 1.3:-23125298 MS.gene99514:CDS
TGTGGTGAGAGCATATCTAG+TGG 0.753755 1.3:-23125034 MS.gene99514:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTACTTTTTAAAATTATT+GGG + chr1.3:23125369-23125388 None:intergenic 10.0%
!!! TAATAAGATAATAATTTTTC+GGG + chr1.3:23126546-23126565 None:intergenic 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr1.3:23126498-23126517 MS.gene99514:intron 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr1.3:23126497-23126516 MS.gene99514:intron 10.0%
!! CTCTATAAATTAATAATGTT+AGG - chr1.3:23126184-23126203 MS.gene99514:intron 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr1.3:23126211-23126230 None:intergenic 15.0%
!!! AAACTCTTTAATTTAATACT+AGG + chr1.3:23126650-23126669 None:intergenic 15.0%
!!! AAATTTCAGAGTTTAATTTT+AGG + chr1.3:23125655-23125674 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr1.3:23126574-23126593 MS.gene99514:intron 15.0%
!!! ATAATTTTAAAAAGTAAACG+AGG - chr1.3:23125370-23125389 MS.gene99514:CDS 15.0%
!!! CGTTTACTTTTTAAAATTAT+TGG + chr1.3:23125370-23125389 None:intergenic 15.0%
!!! TAGCTTTTTTTTTTTTTTTG+TGG + chr1.3:23125908-23125927 None:intergenic 15.0%
!!! TTTTCAAATATATATGTATG+AGG + chr1.3:23125986-23126005 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTGTGGAA+CGG + chr1.3:23125903-23125922 None:intergenic 15.0%
!! CTAGGTTATATATTTATGTT+TGG + chr1.3:23126020-23126039 None:intergenic 20.0%
!! TAAATTAATAATGTTAGGAC+CGG - chr1.3:23126189-23126208 MS.gene99514:intron 20.0%
!! TTAACTAATTGTCTCTTATT+TGG + chr1.3:23125800-23125819 None:intergenic 20.0%
!!! ATAAGTTTGGTTTGATTTTA+GGG - chr1.3:23125750-23125769 MS.gene99514:intron 20.0%
!!! ATACCTTTTAAAAATGCTAA+AGG - chr1.3:23127372-23127391 MS.gene99514:CDS 20.0%
!!! ATTAGATTTTACAAGCAATA+AGG + chr1.3:23125434-23125453 None:intergenic 20.0%
!!! TAACTAATTGTCTCTTATTT+GGG + chr1.3:23125799-23125818 None:intergenic 20.0%
!!! TTCTCTTATTTATACCAAAT+AGG + chr1.3:23125951-23125970 None:intergenic 20.0%
!!! TTGATTTTAGGGTTAAAATA+GGG - chr1.3:23125761-23125780 MS.gene99514:intron 20.0%
!!! TTTGATTTTAGGGTTAAAAT+AGG - chr1.3:23125760-23125779 MS.gene99514:intron 20.0%
! AAACTAATGGTTGATTGTAA+TGG - chr1.3:23125038-23125057 MS.gene99514:CDS 25.0%
! AAGGAAGAAATAATGATACT+AGG + chr1.3:23127513-23127532 None:intergenic 25.0%
! AATGTTACTCTTAAGCAATT+TGG - chr1.3:23125092-23125111 MS.gene99514:CDS 25.0%
! ATAATATACTTCGTTTGGTT+CGG - chr1.3:23125231-23125250 MS.gene99514:CDS 25.0%
! ATTGTACATACCAAACAAAA+AGG - chr1.3:23126291-23126310 MS.gene99514:intron 25.0%
! CAATTCAATTATTTCATGTC+TGG - chr1.3:23125727-23125746 MS.gene99514:intron 25.0%
! CAGACATGAAATAATTGAAT+TGG + chr1.3:23125729-23125748 None:intergenic 25.0%
! GTTATAATCCAAACTGTATA+GGG + chr1.3:23125548-23125567 None:intergenic 25.0%
! TAGTTGTAAAATTGTATCAC+AGG + chr1.3:23124906-23124925 None:intergenic 25.0%
! TCATAAGATGAGAAAAGTAA+CGG - chr1.3:23125629-23125648 MS.gene99514:intron 25.0%
! TCTTCATAATATACTTCGTT+TGG - chr1.3:23125226-23125245 MS.gene99514:CDS 25.0%
! TGTTATAATCCAAACTGTAT+AGG + chr1.3:23125549-23125568 None:intergenic 25.0%
! TTACAACTATGATCCAAATA+TGG - chr1.3:23124917-23124936 MS.gene99514:CDS 25.0%
!! ACTCCTTTAGCATTTTTAAA+AGG + chr1.3:23127378-23127397 None:intergenic 25.0%
!! CTTTTCTAATAACATCAACA+GGG + chr1.3:23124953-23124972 None:intergenic 25.0%
!! GAAATAATGATACTAGGTTT+TGG + chr1.3:23127507-23127526 None:intergenic 25.0%
!! TAAAGGGATAATTGTTTCTT+TGG + chr1.3:23126947-23126966 None:intergenic 25.0%
!! TCTTATTTATACCAAATAGG+TGG + chr1.3:23125948-23125967 None:intergenic 25.0%
!!! GATAAGTTTGGTTTGATTTT+AGG - chr1.3:23125749-23125768 MS.gene99514:intron 25.0%
!!! TAATCACATGTGTTTGATTT+TGG - chr1.3:23126073-23126092 MS.gene99514:intron 25.0%
!!! TGTTATTTTTCATGCTTTGA+TGG - chr1.3:23125460-23125479 MS.gene99514:CDS 25.0%
!!! TTGATGGTTTTACAAATTCA+AGG + chr1.3:23124812-23124831 None:intergenic 25.0%
!!! TTTTTACATTGGTCTAAGTT+GGG - chr1.3:23126585-23126604 MS.gene99514:intron 25.0%
!!! TTTTTTACATTGGTCTAAGT+TGG - chr1.3:23126584-23126603 MS.gene99514:intron 25.0%
AAAAAGTAAACGAGGTCAAA+AGG - chr1.3:23125378-23125397 MS.gene99514:CDS 30.0%
AAAAATGCTAAAGGAGTAGA+AGG - chr1.3:23127381-23127400 MS.gene99514:CDS 30.0%
AACATTAACCAACCAACTAT+GGG - chr1.3:23127477-23127496 MS.gene99514:CDS 30.0%
AACTATGATCCAAATATGGA+AGG - chr1.3:23124921-23124940 MS.gene99514:CDS 30.0%
ACTATGATCCAAATATGGAA+GGG - chr1.3:23124922-23124941 MS.gene99514:CDS 30.0%
ACTATTGTGTTCATATGCAT+TGG - chr1.3:23126378-23126397 MS.gene99514:intron 30.0%
ATTTCATGTCTGGATAAGTT+TGG - chr1.3:23125737-23125756 MS.gene99514:intron 30.0%
CAAATATATATGTATGAGGC+TGG + chr1.3:23125982-23126001 None:intergenic 30.0%
CACTTTGAATACTAGAGATT+GGG + chr1.3:23124778-23124797 None:intergenic 30.0%
GAAATAATTGAATTGGACCA+GGG + chr1.3:23125722-23125741 None:intergenic 30.0%
TAAAGAAGCTCATTTATGCA+AGG + chr1.3:23125140-23125159 None:intergenic 30.0%
TACAGTGGTGTTTATAAGTT+TGG + chr1.3:23125851-23125870 None:intergenic 30.0%
TCACTTTGAATACTAGAGAT+TGG + chr1.3:23124779-23124798 None:intergenic 30.0%
TGAAATAATTGAATTGGACC+AGG + chr1.3:23125723-23125742 None:intergenic 30.0%
TGGTGTTTATAAGTTTGGTT+GGG + chr1.3:23125846-23125865 None:intergenic 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr1.3:23126516-23126535 MS.gene99514:intron 30.0%
! GAAAGTAGTTTTCTATCATG+AGG + chr1.3:23124843-23124862 None:intergenic 30.0%
! GATAATTGTTTCTTTGGTGT+CGG + chr1.3:23126941-23126960 None:intergenic 30.0%
! GCTTTTCTAATAACATCAAC+AGG + chr1.3:23124954-23124973 None:intergenic 30.0%
! GGAGATCCCTTTATAATTTT+CGG + chr1.3:23126525-23126544 None:intergenic 30.0%
! TAATATACTTCGTTTGGTTC+GGG - chr1.3:23125232-23125251 MS.gene99514:CDS 30.0%
! TAATTGTCTCTTATTTGGGT+TGG + chr1.3:23125795-23125814 None:intergenic 30.0%
!! ATAATTGTTTCTTTGGTGTC+GGG + chr1.3:23126940-23126959 None:intergenic 30.0%
!! CAAAATTAGAGTGTTGTTGT+TGG + chr1.3:23127044-23127063 None:intergenic 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr1.3:23126304-23126323 None:intergenic 30.0%
!! GGGTTTGAAATTTTAAACCA+AGG - chr1.3:23125259-23125278 MS.gene99514:CDS 30.0%
!!! TTTTAGGGTTAAAATAGGGT+TGG - chr1.3:23125765-23125784 MS.gene99514:intron 30.0%
AAGCAAAAGCTTCAAGGTTA+AGG + chr1.3:23125495-23125514 None:intergenic 35.0%
AGAGAATTGTGGCATGTAAA+GGG + chr1.3:23126963-23126982 None:intergenic 35.0%
AGCTCATTTATGCAAGGAAA+TGG + chr1.3:23125134-23125153 None:intergenic 35.0%
ATGGTTGATTGTAATGGTGA+AGG - chr1.3:23125044-23125063 MS.gene99514:CDS 35.0%
ATTAACCCATCCTTACCAAA+CGG - chr1.3:23127159-23127178 MS.gene99514:CDS 35.0%
ATTCTCTGCTCTTTCTTCTT+CGG - chr1.3:23126976-23126995 MS.gene99514:intron 35.0%
CTCTAGTATTCAAAGTGAAG+AGG - chr1.3:23124781-23124800 MS.gene99514:CDS 35.0%
CTTGAAATGAAATTGTGTGC+AGG - chr1.3:23126702-23126721 MS.gene99514:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr1.3:23126515-23126534 MS.gene99514:intron 35.0%
GAACATTAACCAACCAACTA+TGG - chr1.3:23127476-23127495 MS.gene99514:CDS 35.0%
GTCAAAAGGTTGAATATACG+AGG - chr1.3:23125392-23125411 MS.gene99514:CDS 35.0%
GTGAGTTCAATACATTAGCT+AGG + chr1.3:23126038-23126057 None:intergenic 35.0%
GTGGTGTTTATAAGTTTGGT+TGG + chr1.3:23125847-23125866 None:intergenic 35.0%
TATACCTGAATAAGCAGCAA+TGG + chr1.3:23125197-23125216 None:intergenic 35.0%
TCATTTATGCAAGGAAATGG+AGG + chr1.3:23125131-23125150 None:intergenic 35.0%
TTACACAAATCCAAACCTCA+GGG - chr1.3:23125340-23125359 MS.gene99514:CDS 35.0%
TTTGATACCGTAATCCATCT+TGG + chr1.3:23124881-23124900 None:intergenic 35.0%
! AGTAGAAGGTTTGGTTATAC+CGG - chr1.3:23127395-23127414 MS.gene99514:CDS 35.0%
! AGTTTTCTATCATGAGGTGT+TGG + chr1.3:23124837-23124856 None:intergenic 35.0%
! GTGTTTTACTATCCATTTGC+AGG - chr1.3:23124990-23125009 MS.gene99514:CDS 35.0%
! TCAACCATTAGTTTCCTACT+AGG + chr1.3:23125032-23125051 None:intergenic 35.0%
!! ATGATGACCAAGATGGATTA+CGG - chr1.3:23124871-23124890 MS.gene99514:CDS 35.0%
!!! ATTGCAGATTTTTAGAACCC+TGG - chr1.3:23125702-23125721 MS.gene99514:intron 35.0%
!!! GGTTTTAGAGAGGTTGATTT+CGG - chr1.3:23127291-23127310 MS.gene99514:CDS 35.0%
!!! TAAACATGCTGGTTTTAGAG+AGG - chr1.3:23127281-23127300 MS.gene99514:CDS 35.0%
!!! TGAAGGTGTTTTGTTCATTG+AGG - chr1.3:23125061-23125080 MS.gene99514:CDS 35.0%
AAATCCTCACTGCATTCCTT+TGG - chr1.3:23127064-23127083 MS.gene99514:intron 40.0%
AACCTTCAATCTCACCAGTA+TGG - chr1.3:23126845-23126864 MS.gene99514:intron 40.0%
ACAAGCAATAAGGCCTCTAA+GGG + chr1.3:23125424-23125443 None:intergenic 40.0%
AGGTCCTAGTAGGAAACTAA+TGG - chr1.3:23125025-23125044 MS.gene99514:CDS 40.0%
AGTAACCGTTTGGTAAGGAT+GGG + chr1.3:23127167-23127186 None:intergenic 40.0%
ATAGAGAGCTTCTAAACGCA+AGG - chr1.3:23126869-23126888 MS.gene99514:intron 40.0%
ATCCATTTGCAGGTAGATTG+AGG - chr1.3:23125000-23125019 MS.gene99514:CDS 40.0%
ATTAACCAACCAACTATGGG+TGG - chr1.3:23127480-23127499 MS.gene99514:CDS 40.0%
CAGAGAATTGTGGCATGTAA+AGG + chr1.3:23126964-23126983 None:intergenic 40.0%
CCTTAGGCGAAATATCTCAT+GGG - chr1.3:23126815-23126834 MS.gene99514:intron 40.0%
CTAATTTACGTTGAGTCCCA+AGG + chr1.3:23126356-23126375 None:intergenic 40.0%
CTGTCAAAGCAAAAGCTTCA+AGG + chr1.3:23125501-23125520 None:intergenic 40.0%
CTTACACAAATCCAAACCTC+AGG - chr1.3:23125339-23125358 MS.gene99514:CDS 40.0%
GAAGAAAGAGCAGAGAATTG+TGG + chr1.3:23126974-23126993 None:intergenic 40.0%
GAGCTTCTTTATGATGTTCC+TGG - chr1.3:23125149-23125168 MS.gene99514:CDS 40.0%
GATTGGATTCACAGATACCT+TGG + chr1.3:23125279-23125298 None:intergenic 40.0%
GTACACTAAGACCACCTATT+TGG - chr1.3:23125934-23125953 MS.gene99514:intron 40.0%
GTGTCTGTAAGTCAACAGAT+TGG + chr1.3:23125296-23125315 None:intergenic 40.0%
TACAAGCAATAAGGCCTCTA+AGG + chr1.3:23125425-23125444 None:intergenic 40.0%
TAGAGAGCTTCTAAACGCAA+GGG - chr1.3:23126870-23126889 MS.gene99514:intron 40.0%
TAGTAACCGTTTGGTAAGGA+TGG + chr1.3:23127168-23127187 None:intergenic 40.0%
TCACCACAGTAAAATGAGGT+CGG + chr1.3:23127239-23127258 None:intergenic 40.0%
TCCATTTGCAGGTAGATTGA+GGG - chr1.3:23125001-23125020 MS.gene99514:CDS 40.0%
TCCTTACCAAACGGTTACTA+CGG - chr1.3:23127168-23127187 MS.gene99514:CDS 40.0%
TGCTAAAGGAGTAGAAGGTT+TGG - chr1.3:23127386-23127405 MS.gene99514:CDS 40.0%
TTGCTCTTCGTCTAAACCAT+AGG - chr1.3:23126755-23126774 MS.gene99514:intron 40.0%
! GTAACTTGTAGTCTGTACAG+TGG + chr1.3:23125866-23125885 None:intergenic 40.0%
! GTGGTTGATGTTAAACATGC+TGG - chr1.3:23127270-23127289 MS.gene99514:CDS 40.0%
! TAGAGAGGTTGATTTCGGTT+GGG - chr1.3:23127296-23127315 MS.gene99514:CDS 40.0%
! TTAGAGAGGTTGATTTCGGT+TGG - chr1.3:23127295-23127314 MS.gene99514:CDS 40.0%
!! GACATTGATGATGACCAAGA+TGG - chr1.3:23124864-23124883 MS.gene99514:CDS 40.0%
!! TCATGCTTTGATGGCTTTGA+TGG - chr1.3:23125469-23125488 MS.gene99514:CDS 40.0%
!! TTAGAGTGTTGTTGTTGGTG+AGG + chr1.3:23127039-23127058 None:intergenic 40.0%
!!! TCATGAGGTGTTGGTTTTGA+TGG + chr1.3:23124828-23124847 None:intergenic 40.0%
AATTACGTTGCAGCGAACCT+TGG - chr1.3:23126336-23126355 MS.gene99514:intron 45.0%
AGAAGCTCTCTATGCCATAC+TGG + chr1.3:23126862-23126881 None:intergenic 45.0%
ATTACGTTGCAGCGAACCTT+GGG - chr1.3:23126337-23126356 MS.gene99514:intron 45.0%
CAATTGTACGACAACGCCAA+AGG + chr1.3:23127083-23127102 None:intergenic 45.0%
CAGGTAACACGTCTTAAGTG+CGG - chr1.3:23126721-23126740 MS.gene99514:intron 45.0%
CCCATGAGATATTTCGCCTA+AGG + chr1.3:23126818-23126837 None:intergenic 45.0%
CGATGAGTGCATGTTACTCT+TGG + chr1.3:23126901-23126920 None:intergenic 45.0%
CGCTGCAACGTAATTCTAAG+AGG + chr1.3:23126331-23126350 None:intergenic 45.0%
CTCTTTAGTGAACCTCTCCA+TGG + chr1.3:23127439-23127458 None:intergenic 45.0%
GAAACAACTCCTCCTTTAGC+TGG + chr1.3:23127342-23127361 None:intergenic 45.0%
GCCTTAGGCGAAATATCTCA+TGG - chr1.3:23126814-23126833 MS.gene99514:intron 45.0%
GCTCTCACCACAGTAAAATG+AGG + chr1.3:23127243-23127262 None:intergenic 45.0%
GGAGAGGTTCACTAAAGAGT+TGG - chr1.3:23127440-23127459 MS.gene99514:CDS 45.0%
GGGTCTTTCCCTTCCATATT+TGG + chr1.3:23124933-23124952 None:intergenic 45.0%
GGTTGGGGAAAACCTTGTTA+TGG - chr1.3:23127312-23127331 MS.gene99514:CDS 45.0%
TCCCTCAATCTACCTGCAAA+TGG + chr1.3:23125005-23125024 None:intergenic 45.0%
TGAGTGCATGTTACTCTTGG+AGG + chr1.3:23126898-23126917 None:intergenic 45.0%
TGCCATACTGGTGAGATTGA+AGG + chr1.3:23126850-23126869 None:intergenic 45.0%
TGTTATGGAGGACCAGCTAA+AGG - chr1.3:23127327-23127346 MS.gene99514:CDS 45.0%
TTAATCACAGCTGAAGAGCC+AGG + chr1.3:23125170-23125189 None:intergenic 45.0%
TTAGCTGGTCCTCCATAACA+AGG + chr1.3:23127327-23127346 None:intergenic 45.0%
TTGTTTGCCAACTCAAGCCA+TGG - chr1.3:23127419-23127438 MS.gene99514:CDS 45.0%
TTTGCAGGTAGATTGAGGGA+AGG - chr1.3:23125005-23125024 MS.gene99514:CDS 45.0%
! AGAGAGGTTGATTTCGGTTG+GGG - chr1.3:23127297-23127316 MS.gene99514:CDS 45.0%
! CACTCCATTGCTGCTTATTC+AGG - chr1.3:23125190-23125209 MS.gene99514:CDS 45.0%
! TGGGGAAAACCTTGTTATGG+AGG - chr1.3:23127315-23127334 MS.gene99514:CDS 45.0%
! TGTGGTGAGAGCATATCTAG+TGG - chr1.3:23127251-23127270 MS.gene99514:CDS 45.0%
!! ACTTCGTTTGGTTCGGGTAT+TGG - chr1.3:23125238-23125257 MS.gene99514:CDS 45.0%
!! CTTCGTTTGGTTCGGGTATT+GGG - chr1.3:23125239-23125258 MS.gene99514:CDS 45.0%
!! GCTTGAGTTGGCAAACAAAC+CGG + chr1.3:23127417-23127436 None:intergenic 45.0%
!! TACGAGGCTTTTTCCCTTAG+AGG - chr1.3:23125408-23125427 MS.gene99514:CDS 45.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr1.3:23126547-23126566 None:intergenic 5.0%
AAAATTATTGGGCCGCCCTG+AGG + chr1.3:23125358-23125377 None:intergenic 50.0%
AACCTCTCCATGGCTTGAGT+TGG + chr1.3:23127429-23127448 None:intergenic 50.0%
AACGCCAAAGGAATGCAGTG+AGG + chr1.3:23127071-23127090 None:intergenic 50.0%
CACAAATCCAAACCTCAGGG+CGG - chr1.3:23125343-23125362 MS.gene99514:CDS 50.0%
CAGCAGCATCACTCATCCTA+TGG + chr1.3:23126774-23126793 None:intergenic 50.0%
CATAGGATGAGTGATGCTGC+TGG - chr1.3:23126772-23126791 MS.gene99514:intron 50.0%
CGAACTTCTTCGTCGATGTC+TGG + chr1.3:23127114-23127133 None:intergenic 50.0%
CGAATTGCAGCTACCTCAGT+GGG + chr1.3:23127003-23127022 None:intergenic 50.0%
GATTGAGGGAAGGTCCTAGT+AGG - chr1.3:23125015-23125034 MS.gene99514:CDS 50.0%
GCCGTAGTAACCGTTTGGTA+AGG + chr1.3:23127172-23127191 None:intergenic 50.0%
GTAACACGTCTTAAGTGCGG+TGG - chr1.3:23126724-23126743 MS.gene99514:intron 50.0%
GTCCGATTCATGAGTGCCTT+AGG - chr1.3:23126799-23126818 MS.gene99514:intron 50.0%
GTGTTGCCGTAGTAACCGTT+TGG + chr1.3:23127177-23127196 None:intergenic 50.0%
GTTCGCATAGTCAACGTGCA+TGG - chr1.3:23127129-23127148 MS.gene99514:CDS 50.0%
TATGGAGGACCAGCTAAAGG+AGG - chr1.3:23127330-23127349 MS.gene99514:CDS 50.0%
TTGGACCACCCATAGTTGGT+TGG + chr1.3:23127488-23127507 None:intergenic 50.0%
TTTCTTCTTCGGTCCCACTG+AGG - chr1.3:23126987-23127006 MS.gene99514:intron 50.0%
! CACTTTTGCATCTCCTGCTG+CGG - chr1.3:23127194-23127213 MS.gene99514:CDS 50.0%
! CGCCTAAGGCACTCATGAAT+CGG + chr1.3:23126804-23126823 None:intergenic 50.0%
! GAGCCGACCTCATTTTACTG+TGG - chr1.3:23127233-23127252 MS.gene99514:CDS 50.0%
! GAGTGTTGTTGTTGGTGAGG+TGG + chr1.3:23127036-23127055 None:intergenic 50.0%
! GATGAGTGATGCTGCTGGTT+TGG - chr1.3:23126777-23126796 MS.gene99514:intron 50.0%
!!! GGTTTTGGACCACCCATAGT+TGG + chr1.3:23127492-23127511 None:intergenic 50.0%
ACTGCAGTTGTAACCGCAGC+AGG + chr1.3:23127210-23127229 None:intergenic 55.0%
GCGAATTGCAGCTACCTCAG+TGG + chr1.3:23127004-23127023 None:intergenic 55.0%
GCGCGAGAAATCAGTTGGGT+GGG + chr1.3:23125524-23125543 None:intergenic 55.0%
TGCCAACTCAAGCCATGGAG+AGG - chr1.3:23127424-23127443 MS.gene99514:CDS 55.0%
AGAGTATGTTTGCGCGCGCG+CGG + chr1.3:23125321-23125340 None:intergenic 60.0%
AGGGCGCGCGAGAAATCAGT+TGG + chr1.3:23125529-23125548 None:intergenic 60.0%
CGCGCGAGAAATCAGTTGGG+TGG + chr1.3:23125525-23125544 None:intergenic 60.0%
CTCGCGCGCCCTATACAGTT+TGG - chr1.3:23125537-23125556 MS.gene99514:CDS 60.0%
GGGCGCGCGAGAAATCAGTT+GGG + chr1.3:23125528-23125547 None:intergenic 60.0%
TATTGGGCCGCCCTGAGGTT+TGG + chr1.3:23125353-23125372 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 23124771 23127536 23124771 ID=MS.gene99514
chr1.3 mRNA 23124771 23127536 23124771 ID=MS.gene99514.t1;Parent=MS.gene99514
chr1.3 exon 23127096 23127536 23127096 ID=MS.gene99514.t1.exon1;Parent=MS.gene99514.t1
chr1.3 CDS 23127096 23127536 23127096 ID=cds.MS.gene99514.t1;Parent=MS.gene99514.t1
chr1.3 exon 23124771 23125583 23124771 ID=MS.gene99514.t1.exon2;Parent=MS.gene99514.t1
chr1.3 CDS 23124771 23125583 23124771 ID=cds.MS.gene99514.t1;Parent=MS.gene99514.t1
Gene Sequence

>MS.gene99514

ATGGCCCAATCTCTAGTATTCAAAGTGAAGAGGCGTGTCCTTGAATTTGTAAAACCATCAAAACCAACACCTCATGATAGAAAACTACTTTCAGACATTGATGATGACCAAGATGGATTACGGTATCAAATGCCTGTGATACAATTTTACAACTATGATCCAAATATGGAAGGGAAAGACCCTGTTGATGTTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTACTATCCATTTGCAGGTAGATTGAGGGAAGGTCCTAGTAGGAAACTAATGGTTGATTGTAATGGTGAAGGTGTTTTGTTCATTGAGGCTGATGCTAATGTTACTCTTAAGCAATTTGGTGATGCTCTTCATCCTCCATTTCCTTGCATAAATGAGCTTCTTTATGATGTTCCTGGCTCTTCAGCTGTGATTAACACTCCATTGCTGCTTATTCAGGTATAGTTTTTTAATCTTCATAATATACTTCGTTTGGTTCGGGTATTGGGTTTGAAATTTTAAACCAAGGTATCTGTGAATCCAATCTGTTGACTTACAGACACATCCGCGCGCGCGCAAACATACTCTTACACAAATCCAAACCTCAGGGCGGCCCAATAATTTTAAAAAGTAAACGAGGTCAAAAGGTTGAATATACGAGGCTTTTTCCCTTAGAGGCCTTATTGCTTGTAAAATCTAATGAAAAATGTTATTTTTCATGCTTTGATGGCTTTGATGGCCTTAACCTTGAAGCTTTTGCTTTGACAGCCCACCCAACTGATTTCTCGCGCGCCCTATACAGTTTGGATTATAACAAGCTCGTAAAGACGTTAAAACATTTCAGATTTTAGAATCTAAATAGAGCGCGCAAGAAACTCATAAGATGAGAAAAGTAACGGCCTAAAATTAAACTCTGAAATTTAAATGTTTTTTAAAGTTTGCTCTTTGAATTGCAGATTTTTAGAACCCTGGTCCAATTCAATTATTTCATGTCTGGATAAGTTTGGTTTGATTTTAGGGTTAAAATAGGGTTGGTAATCCAACCCAAATAAGAGACAATTAGTTAATTTATTTTTTTTGTGAAATTCGACCCAACCAAACTTATAAACACCACTGTACAGACTACAAGTTACTAAATAAATAATTGCCGTTCCACAAAAAAAAAAAAAAAGCTAAATAATGTACACTAAGACCACCTATTTGGTATAAATAAGAGAAATCAAGATCCAGCCTCATACATATATATTTGAAAAATATGCTAGATCCAAACATAAATATATAACCTAGCTAATGTATTGAACTCACATTTATTTTTAAAAATAATCACATGTGTTTGATTTTGGTCAAATTTTAATTATAAAAATAATCACATGTGTTTGATTTTGGTCAAATTTTAATTATTTTTTGAAAATAGATCAATTACAGTTAAAACTCTATAAATTAATAATGTTAGGACCGGAGAAATTTATTAATTTAGAGAGTTATTAATTTATCGATAAATTAATAATTATTAATTTAAAGAGTTTTTAAGTAATTATATTGTACATACCAAACAAAAAGGCAAATTAGTCTATGCCTCTTAGAATTACGTTGCAGCGAACCTTGGGACTCAACGTAAATTAGTAACTATTGTGTTCATATGCATTGGAAATCAATAATGACTTTTGAAGTACAGTAAATGTAAACAAGATGAACAAATGTGTTCAATGTATTCTTAATATATATTTTTTTCAGTTTCTATGAATTATTAATTTATGATTTTCTTGGGACCGAAAATTATAAAGGGATCTCCCGAAAAATTATTATCTTATTATTTTATCGAGTTTTTCAATTTTTTACATTGGTCTAAGTTGGGACATGACAAATTTATTATTTTAGAGAGTTTATTAATTTACCTAGTATTAAATTAAAGAGTTTCTTCTGTATATATTTATTCATACATTCACATACTTGAAATGAAATTGTGTGCAGGTAACACGTCTTAAGTGCGGTGGTTTCATTTTTGCTCTTCGTCTAAACCATAGGATGAGTGATGCTGCTGGTTTGGTCCGATTCATGAGTGCCTTAGGCGAAATATCTCATGGGATGAACAAACCTTCAATCTCACCAGTATGGCATAGAGAGCTTCTAAACGCAAGGGATCCTCCAAGAGTAACATGCACTCATCGTGAATATGAACAAGTTCCCGACACCAAAGAAACAATTATCCCTTTACATGCCACAATTCTCTGCTCTTTCTTCTTCGGTCCCACTGAGGTAGCTGCAATTCGCACTCTTCTTCCACCTCACCAACAACAACACTCTAATTTTGAAATCCTCACTGCATTCCTTTGGCGTTGTCGTACAATTGCGTTACAACCAGACATCGACGAAGAAGTTCGCATAGTCAACGTGCATGGCAAGTTTATTAACCCATCCTTACCAAACGGTTACTACGGCAACACTTTTGCATCTCCTGCTGCGGTTACAACTGCAGTAAAGAGCCGACCTCATTTTACTGTGGTGAGAGCATATCTAGTGGTTGATGTTAAACATGCTGGTTTTAGAGAGGTTGATTTCGGTTGGGGAAAACCTTGTTATGGAGGACCAGCTAAAGGAGGAGTTGTTTCTAGTTCGTATATACCTTTTAAAAATGCTAAAGGAGTAGAAGGTTTGGTTATACCGGTTTGTTTGCCAACTCAAGCCATGGAGAGGTTCACTAAAGAGTTGGATAGTGTGTTTAAGAACATTAACCAACCAACTATGGGTGGTCCAAAACCTAGTATCATTATTTCTTCCTTGTAG
Protein sequence

>MS.gene99514.t1

MAQSLVFKVKRRVLEFVKPSKPTPHDRKLLSDIDDDQDGLRYQMPVIQFYNYDPNMEGKDPVDVIRKALAKTLVFYYPFAGRLREGPSRKLMVDCNGEGVLFIEADANVTLKQFGDALHPPFPCINELLYDVPGSSAVINTPLLLIQVTRLKCGGFIFALRLNHRMSDAAGLVRFMSALGEISHGMNKPSISPVWHRELLNARDPPRVTCTHREYEQVPDTKETIIPLHATILCSFFFGPTEVAAIRTLLPPHQQQHSNFEILTAFLWRCRTIALQPDIDEEVRIVNVHGKFINPSLPNGYYGNTFASPAAVTTAVKSRPHFTVVRAYLVVDVKHAGFREVDFGWGKPCYGGPAKGGVVSSSYIPFKNAKGVEGLVIPVCLPTQAMERFTKELDSVFKNINQPTMGGPKPSIIISSL