AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002238.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002238.01.T01 MTR_3g018780 88.854 314 8 1 1 287 1 314 0.0 554
MsG0180002238.01.T01 MTR_8g038220 71.338 314 62 2 1 287 1 313 7.04e-165 460
MsG0180002238.01.T01 MTR_8g038220 71.019 314 64 1 1 287 1 314 3.00e-164 458
MsG0180002238.01.T01 MTR_8g038180 66.026 312 79 1 1 285 1 312 1.87e-146 413
MsG0180002238.01.T01 MTR_8g038210 65.287 314 81 2 1 287 1 313 4.03e-144 407
MsG0180002238.01.T01 MTR_8g038210 65.287 314 81 2 1 287 1 313 4.35e-144 407
MsG0180002238.01.T01 MTR_3g018790 61.465 314 94 1 1 287 1 314 1.92e-137 390
MsG0180002238.01.T01 MTR_3g018790 58.750 240 72 1 73 285 19 258 2.51e-96 284
MsG0180002238.01.T01 MTR_2g031980 43.087 311 150 1 1 284 1 311 2.14e-90 271
MsG0180002238.01.T01 MTR_5g063670 42.540 315 153 2 1 287 1 315 2.30e-81 248
MsG0180002238.01.T01 MTR_0276s0050 44.089 313 147 2 1 285 1 313 1.10e-79 244
MsG0180002238.01.T01 MTR_3g018920 58.602 186 62 2 1 181 1 176 1.42e-68 211
MsG0180002238.01.T01 MTR_8g038150 37.377 305 161 2 11 285 12 316 2.99e-62 199
MsG0180002238.01.T01 MTR_8g107640 36.741 313 168 4 1 284 1 312 3.32e-61 196
MsG0180002238.01.T01 MTR_6g071605 37.342 316 168 4 1 287 1 315 2.55e-58 189
MsG0180002238.01.T01 MTR_6g071615 37.658 316 167 4 1 287 1 315 1.60e-56 184
MsG0180002238.01.T01 MTR_1g033560 33.546 313 178 4 1 284 1 312 5.25e-54 178
MsG0180002238.01.T01 MTR_1g112520 35.873 315 172 5 1 286 1 314 3.40e-51 171
MsG0180002238.01.T01 MTR_6g071595 34.228 298 167 3 15 284 16 312 5.19e-47 160
MsG0180002238.01.T01 MTR_3g018925 64.762 105 37 0 181 285 3 107 2.67e-40 136
MsG0180002238.01.T01 MTR_8g038170 32.911 316 160 7 14 285 5 312 1.51e-39 140
MsG0180002238.01.T01 MTR_8g038170 32.911 316 160 7 14 285 5 312 1.51e-39 140
MsG0180002238.01.T01 MTR_6g071595 29.661 236 137 3 15 222 16 250 1.19e-28 110
MsG0180002238.01.T01 MTR_6g028030 25.694 288 179 5 33 285 23 310 2.69e-22 94.7
MsG0180002238.01.T01 MTR_8g038090 51.389 72 30 2 217 285 22 91 4.50e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002238.01.T01 AT5G12380 49.518 311 130 1 1 284 1 311 1.39e-106 312
MsG0180002238.01.T01 AT1G35720 45.570 316 143 3 1 287 1 316 9.04e-89 267
MsG0180002238.01.T01 AT5G10230 45.714 315 142 3 1 287 1 314 3.32e-86 261
MsG0180002238.01.T01 AT5G10220 45.902 305 135 3 12 287 13 316 5.85e-84 255
MsG0180002238.01.T01 AT5G65020 43.987 316 148 3 1 287 1 316 2.07e-82 251
MsG0180002238.01.T01 AT5G65020 44.330 291 134 2 25 287 11 301 3.33e-77 237
MsG0180002238.01.T01 AT2G38760 38.679 318 161 4 1 284 1 318 1.79e-69 218
MsG0180002238.01.T01 AT1G68090 35.144 313 174 3 1 284 1 313 1.40e-55 182
MsG0180002238.01.T01 AT1G68090 33.200 250 138 3 1 221 1 250 3.03e-37 133
MsG0180002238.01.T01 AT2G38750 31.169 308 160 8 25 287 19 319 3.24e-33 124
MsG0180002238.01.T01 AT2G38750 31.169 308 160 8 25 287 2 302 3.26e-33 124

Find 56 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCCATTATCGCAATTT+TGG 0.073058 1:+35298587 MsG0180002238.01.T01:CDS
CGCAATGCAATCAAGAAATT+TGG 0.087435 1:+35300922 MsG0180002238.01.T01:CDS
GCCTCAGTTTGTGCCAATTT+TGG 0.143057 1:-35300144 None:intergenic
GAAGTTCATCCTCACTCTTT+TGG 0.245293 1:+35301083 MsG0180002238.01.T01:CDS
TAGCTGTGTGCAATGTCTTC+TGG 0.302304 1:-35300630 None:intergenic
TTGGATTGGTGAGCTCATTT+AGG 0.322139 1:+35300100 MsG0180002238.01.T01:CDS
ATGACCCAAAATTGCGATAA+TGG 0.322359 1:-35298592 None:intergenic
AGATGAGATCAATCCAAAAT+TGG 0.327469 1:+35300131 MsG0180002238.01.T01:CDS
CCTTCTCGTAGTACTTTATA+TGG 0.335836 1:-35300669 None:intergenic
TTCATCTTTGCAGAAATTGC+TGG 0.338098 1:+35300588 MsG0180002238.01.T01:intron
CATCTTGAACAGGAGATGTT+TGG 0.339606 1:-35296773 None:intergenic
ATCTTGAACAGGAGATGTTT+GGG 0.402524 1:-35296772 None:intergenic
GCAACAATGAAGAAGTCATT+AGG 0.413585 1:+35300202 MsG0180002238.01.T01:CDS
GTGAGCTCATTTAGGTATGA+AGG 0.462503 1:+35300108 MsG0180002238.01.T01:CDS
ACAGATTAGAAAAGCTTATG+AGG 0.471180 1:+35298635 MsG0180002238.01.T01:CDS
GATTGTGACAAGGGCTGAAA+AGG 0.472813 1:+35300972 MsG0180002238.01.T01:CDS
AGAGCCTCAGCATCTTGAAC+AGG 0.477894 1:-35296783 None:intergenic
GCAGTTTCTGAGGAAACCTC+AGG 0.498057 1:+35301051 MsG0180002238.01.T01:CDS
AGAAATCTCCGGTGACTTTG+AGG 0.502072 1:+35298695 MsG0180002238.01.T01:CDS
GCTATCAACTGAAGAGCTCT+TGG 0.504256 1:+35299017 MsG0180002238.01.T01:CDS
AAAACAGCATCACGGTCTGC+AGG 0.524079 1:-35298931 None:intergenic
TGCCATGCTCATCTCTATAA+CGG 0.526005 1:-35300269 None:intergenic
GCTCTTCGACTTGCTTTCAA+AGG 0.529320 1:+35296801 MsG0180002238.01.T01:CDS
GAAAGTGTCAAGGAAAAGAA+AGG 0.529912 1:+35300180 MsG0180002238.01.T01:CDS
AAATTTGGAACCGATGAAGA+TGG 0.530403 1:+35300937 MsG0180002238.01.T01:CDS
TGAACAACAATGGTGGCCAT+TGG 0.534654 1:-35296747 None:intergenic
TCTTGAAGATGCAGTTTCTG+AGG 0.550644 1:+35301041 MsG0180002238.01.T01:CDS
TCCAAAATTGGCACAAACTG+AGG 0.551400 1:+35300143 MsG0180002238.01.T01:CDS
CGTCTTGAGTCAGAAATCTC+CGG 0.560368 1:+35298684 MsG0180002238.01.T01:CDS
AAGTTGATTCTTGCTCCTTG+TGG 0.561941 1:-35300232 None:intergenic
AAGGGCTGAAAAGGATCTGA+AGG 0.563529 1:+35300981 MsG0180002238.01.T01:CDS
TTCAGAGGGCTGTGTACCGG+TGG 0.570665 1:+35298899 MsG0180002238.01.T01:intron
ATCTCCTGTTCAAGATGCTG+AGG 0.576916 1:+35296779 MsG0180002238.01.T01:CDS
AGGATGGGGTGCTGATAACA+AGG 0.586318 1:+35298569 MsG0180002238.01.T01:intron
ATCAATGTAGCAATCAGGAA+TGG 0.588048 1:+35298955 MsG0180002238.01.T01:CDS
GGCTGTGTACCGGTGGATGT+TGG 0.594758 1:+35298906 MsG0180002238.01.T01:CDS
GAACTTCTTGTAGTCCCCTG+AGG 0.600520 1:-35301067 None:intergenic
GCGGCTCAGTCCATCTTCAT+CGG 0.605259 1:-35300947 None:intergenic
ATAGTATACCTCAAAGTCAC+CGG 0.609513 1:-35298703 None:intergenic
CTGCAGGTTCCAACATCCAC+CGG 0.614647 1:-35298915 None:intergenic
CAGCCCTTGTCACAATCACG+CGG 0.616887 1:-35300966 None:intergenic
GTCATAGAAATGTTCATCAG+AGG 0.629014 1:+35298610 MsG0180002238.01.T01:CDS
TATTATTCATGAAAGTGTCA+AGG 0.631217 1:+35300170 MsG0180002238.01.T01:CDS
CAGTTTCTGAGGAAACCTCA+GGG 0.637084 1:+35301052 MsG0180002238.01.T01:CDS
CATGTTTCCCCAAAAGAGTG+AGG 0.645029 1:-35301092 None:intergenic
TCATTAGGATTCTTACCACA+AGG 0.647125 1:+35300217 MsG0180002238.01.T01:CDS
AACCGTTATAGAGATGAGCA+TGG 0.649014 1:+35300267 MsG0180002238.01.T01:CDS
CCATATAAAGTACTACGAGA+AGG 0.658306 1:+35300669 MsG0180002238.01.T01:CDS
TGAGCCGCGTGATTGTGACA+AGG 0.658507 1:+35300962 MsG0180002238.01.T01:CDS
GCATGGCATCTCCATTAGCA+AGG 0.659991 1:+35300284 MsG0180002238.01.T01:CDS
GAGCCGCGTGATTGTGACAA+GGG 0.685501 1:+35300963 MsG0180002238.01.T01:CDS
CATTGATCAAAACAGCATCA+CGG 0.696529 1:-35298939 None:intergenic
TGGCAACAAAGACTATCATG+TGG 0.723538 1:+35298975 MsG0180002238.01.T01:CDS
AGTTTCTGAGGAAACCTCAG+GGG 0.750846 1:+35301053 MsG0180002238.01.T01:CDS
TGTTTGGGTATGAACAACAA+TGG 0.765391 1:-35296757 None:intergenic
TTGGGTATGAACAACAATGG+TGG 0.773418 1:-35296754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAACTTTTTTCATTTA+CGG + Chr1:35300315-35300334 MsG0180002238.01.T01:intron 10.0%
!!! TAACAAAAATGTTTTTTTTT+TGG - Chr1:35297620-35297639 None:intergenic 10.0%
!!! TTTTTATAGAAAATTTTTAC+CGG + Chr1:35297504-35297523 MsG0180002238.01.T01:intron 10.0%
!!! TTTTTTTTTGGTATAAAAAA+AGG - Chr1:35297608-35297627 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGACA+AGG - Chr1:35297857-35297876 None:intergenic 10.0%
!! AAAAAATTGAACTTGTAAAA+GGG - Chr1:35297489-35297508 None:intergenic 15.0%
!! AAATTTGTAAGATATTATAC+CGG + Chr1:35299478-35299497 MsG0180002238.01.T01:intron 15.0%
!! AATTATATAAGAAGAACTTA+TGG + Chr1:35297900-35297919 MsG0180002238.01.T01:intron 15.0%
!! CATAATAATCTATTACAAAA+AGG + Chr1:35298506-35298525 MsG0180002238.01.T01:intron 15.0%
!! CATAATTTCTAATTATTTGT+AGG + Chr1:35300894-35300913 MsG0180002238.01.T01:intron 15.0%
!! TAAAAAATTGAACTTGTAAA+AGG - Chr1:35297490-35297509 None:intergenic 15.0%
!!! AAGGATTAATTTGATTTAAA+TGG + Chr1:35299603-35299622 MsG0180002238.01.T01:intron 15.0%
!!! AATATATTTTCCTTACTATA+TGG - Chr1:35297941-35297960 None:intergenic 15.0%
!!! CTATTTTTTTTTCGAAAATA+AGG - Chr1:35297162-35297181 None:intergenic 15.0%
!!! GATTATAATGATTTTTTTGA+AGG + Chr1:35296885-35296904 MsG0180002238.01.T01:intron 15.0%
!!! TTTGATAATGTTTTAAATTG+TGG + Chr1:35299915-35299934 MsG0180002238.01.T01:intron 15.0%
!! AAAATCAACTTGAAAATTGA+GGG - Chr1:35299256-35299275 None:intergenic 20.0%
!! AAATACATTTATGGTGATAA+GGG + Chr1:35297748-35297767 MsG0180002238.01.T01:intron 20.0%
!! ACCATTAATTTATTCATCAA+CGG - Chr1:35298776-35298795 None:intergenic 20.0%
!! AGTTATACAAATCAAAAGTA+AGG - Chr1:35299870-35299889 None:intergenic 20.0%
!! CAAAATGAAGCAATAATTTA+AGG - Chr1:35298043-35298062 None:intergenic 20.0%
!! TAAATACATTTATGGTGATA+AGG + Chr1:35297747-35297766 MsG0180002238.01.T01:intron 20.0%
!! TGAGATATTTGATTATAGAA+AGG - Chr1:35300709-35300728 None:intergenic 20.0%
!!! AAAAAACATTTTTGTTAGCT+AGG + Chr1:35297623-35297642 MsG0180002238.01.T01:intron 20.0%
!!! ATTGTTTTAAAAAAGCCTTT+CGG - Chr1:35300390-35300409 None:intergenic 20.0%
!!! CAACAATAAAAATGATTTTG+AGG - Chr1:35299988-35300007 None:intergenic 20.0%
!!! TCTAAAATATGGACTATATA+AGG - Chr1:35299362-35299381 None:intergenic 20.0%
!!! TTGATTTAGTCTCTAAAATA+TGG - Chr1:35299373-35299392 None:intergenic 20.0%
! AAATCAACTTGAAAATTGAG+GGG - Chr1:35299255-35299274 None:intergenic 25.0%
! AACATAAAACTCAATCGAAT+CGG + Chr1:35299176-35299195 MsG0180002238.01.T01:intron 25.0%
! AGGAACATAAAAAAAGCTTA+TGG - Chr1:35297571-35297590 None:intergenic 25.0%
! AGTACAACTATAATCAAAAC+CGG - Chr1:35300041-35300060 None:intergenic 25.0%
! ATATTTCAATACACTCGTAA+TGG - Chr1:35298823-35298842 None:intergenic 25.0%
! ATGAAGTGAGTTAATGTATA+AGG - Chr1:35300877-35300896 None:intergenic 25.0%
! ATTATGATTGATCAATGTGA+TGG + Chr1:35298300-35298319 MsG0180002238.01.T01:intron 25.0%
! ATTCATTCAATAATAACGCA+AGG + Chr1:35297699-35297718 MsG0180002238.01.T01:intron 25.0%
! CAAAATCAACTTGAAAATTG+AGG - Chr1:35299257-35299276 None:intergenic 25.0%
! GTACCTACTAAATACATTTA+TGG + Chr1:35297739-35297758 MsG0180002238.01.T01:intron 25.0%
! TACAATTTGAGAAATCAAAC+CGG - Chr1:35297526-35297545 None:intergenic 25.0%
! TATCATGTAGGACATTTATT+TGG - Chr1:35300833-35300852 None:intergenic 25.0%
! TATTTCAATACACTCGTAAT+GGG - Chr1:35298822-35298841 None:intergenic 25.0%
! TCAACATAGATCAATATTAC+AGG + Chr1:35299389-35299408 MsG0180002238.01.T01:intron 25.0%
! TCACCATAAATGTATTTAGT+AGG - Chr1:35297745-35297764 None:intergenic 25.0%
! TTCAATTAAGATCAGAAGAA+CGG - Chr1:35299788-35299807 None:intergenic 25.0%
!! AAATCACTAAATTTTCTCCA+TGG + Chr1:35300804-35300823 MsG0180002238.01.T01:intron 25.0%
!! AATTATTTTCCGTATGAACA+AGG - Chr1:35300544-35300563 None:intergenic 25.0%
!! ACCGTTGATGAATAAATTAA+TGG + Chr1:35298772-35298791 MsG0180002238.01.T01:intron 25.0%
!! AGAGTTTGATAGCTATTAAA+AGG - Chr1:35299538-35299557 None:intergenic 25.0%
!! TATTCTTTTAAGCAAAGTCT+CGG - Chr1:35298455-35298474 None:intergenic 25.0%
!! TCTCAATGATTTTATCATGT+AGG - Chr1:35300845-35300864 None:intergenic 25.0%
!! TGATTTAAATGGTATGCTTT+TGG + Chr1:35299614-35299633 MsG0180002238.01.T01:intron 25.0%
!! TTTTAACCATGCTAGATAAT+GGG + Chr1:35296952-35296971 MsG0180002238.01.T01:intron 25.0%
!!! AAAAGGTTATTTTTTCTGAG+AGG - Chr1:35297591-35297610 None:intergenic 25.0%
!!! ACTTTTTTCATTTACGGATA+AGG + Chr1:35300321-35300340 MsG0180002238.01.T01:intron 25.0%
!!! ATAACCAAACACTTTTTCTA+AGG + Chr1:35297269-35297288 MsG0180002238.01.T01:intron 25.0%
!!! ATTGCTTCATTTTGATTGAA+TGG + Chr1:35298049-35298068 MsG0180002238.01.T01:intron 25.0%
!!! ATTTATTTTTCAAACTCTGC+AGG + Chr1:35298549-35298568 MsG0180002238.01.T01:intron 25.0%
!!! ATTTTAACCATGCTAGATAA+TGG + Chr1:35296951-35296970 MsG0180002238.01.T01:intron 25.0%
!!! TATTATTCATGAAAGTGTCA+AGG + Chr1:35300170-35300189 MsG0180002238.01.T01:CDS 25.0%
!!! TTTATTTTGTACCTTGCTAA+TGG - Chr1:35300298-35300317 None:intergenic 25.0%
!!! TTTTCTAGAACTCATGATTT+TGG - Chr1:35299423-35299442 None:intergenic 25.0%
AAATTGTGGTTGTAGTTACA+CGG + Chr1:35299929-35299948 MsG0180002238.01.T01:intron 30.0%
AATAATCAATACCAAGTCCT+TGG - Chr1:35297682-35297701 None:intergenic 30.0%
ACAAATCAAAAGTAAGGATC+CGG - Chr1:35299864-35299883 None:intergenic 30.0%
ACAGATTAGAAAAGCTTATG+AGG + Chr1:35298635-35298654 MsG0180002238.01.T01:CDS 30.0%
AGATGAGATCAATCCAAAAT+TGG + Chr1:35300131-35300150 MsG0180002238.01.T01:CDS 30.0%
ATTCAATAATAACGCAAGGT+AGG + Chr1:35297703-35297722 MsG0180002238.01.T01:intron 30.0%
CCAACAAAATGATGTTTATG+CGG + Chr1:35299144-35299163 MsG0180002238.01.T01:intron 30.0%
GATTTGAGTCCATTTAGTAT+TGG + Chr1:35299318-35299337 MsG0180002238.01.T01:intron 30.0%
GTTGTTTGATCAAGATCAAT+CGG + Chr1:35299685-35299704 MsG0180002238.01.T01:intron 30.0%
TAATCCTTGTTAGAGTCAAA+TGG - Chr1:35299591-35299610 None:intergenic 30.0%
TTGAGGGGATAAATACATTA+TGG - Chr1:35299240-35299259 None:intergenic 30.0%
! AAAATAAAGAATGACTTGCC+TGG - Chr1:35299122-35299141 None:intergenic 30.0%
! ATCAATTTGCCTTGTTCATA+CGG + Chr1:35300532-35300551 MsG0180002238.01.T01:intron 30.0%
! ATTCTTTTAAGCAAAGTCTC+GGG - Chr1:35298454-35298473 None:intergenic 30.0%
! TTTTCCTTACTATATGGTGT+TGG - Chr1:35297935-35297954 None:intergenic 30.0%
! TTTTGATCAATGTAGCAATC+AGG + Chr1:35298950-35298969 MsG0180002238.01.T01:CDS 30.0%
!! AACATCGAATAAGTTGCTTT+TGG + Chr1:35299284-35299303 MsG0180002238.01.T01:intron 30.0%
!! ATGACCTTAGAAAAAGTGTT+TGG - Chr1:35297276-35297295 None:intergenic 30.0%
!! GATTCGATTGAGTTTTATGT+TGG - Chr1:35299177-35299196 None:intergenic 30.0%
!!! AATAAGTTGCTTTTGGATCT+TGG + Chr1:35299291-35299310 MsG0180002238.01.T01:intron 30.0%
ACAACGTCAAATTCTTACCA+CGG + Chr1:35300503-35300522 MsG0180002238.01.T01:intron 35.0%
ACTCACTTTAGACACTAAAG+CGG + Chr1:35298740-35298759 MsG0180002238.01.T01:intron 35.0%
ATAGTATACCTCAAAGTCAC+CGG - Chr1:35298706-35298725 None:intergenic 35.0%
ATCAATGTAGCAATCAGGAA+TGG + Chr1:35298955-35298974 MsG0180002238.01.T01:CDS 35.0%
ATCTTGAACAGGAGATGTTT+GGG - Chr1:35296775-35296794 None:intergenic 35.0%
ATGACCCAAAATTGCGATAA+TGG - Chr1:35298595-35298614 None:intergenic 35.0%
CATTGATCAAAACAGCATCA+CGG - Chr1:35298942-35298961 None:intergenic 35.0%
CCTAGTTCAACTAAATACCA+AGG + Chr1:35297662-35297681 MsG0180002238.01.T01:intron 35.0%
CCTTCTCGTAGTACTTTATA+TGG - Chr1:35300672-35300691 None:intergenic 35.0%
CCTTGGTATTTAGTTGAACT+AGG - Chr1:35297665-35297684 None:intergenic 35.0%
CGAATCGGATTATGACATAA+TGG + Chr1:35299191-35299210 MsG0180002238.01.T01:intron 35.0%
CGCAATGCAATCAAGAAATT+TGG + Chr1:35300922-35300941 MsG0180002238.01.T01:CDS 35.0%
GATCTTGATCAAACAACTAC+TGG - Chr1:35299682-35299701 None:intergenic 35.0%
GCAACAATGAAGAAGTCATT+AGG + Chr1:35300202-35300221 MsG0180002238.01.T01:CDS 35.0%
GTCATAGAAATGTTCATCAG+AGG + Chr1:35298610-35298629 MsG0180002238.01.T01:CDS 35.0%
TATGGTGATAAGGGTAACTT+CGG + Chr1:35297757-35297776 MsG0180002238.01.T01:intron 35.0%
TCAACTAAATACCAAGGACT+TGG + Chr1:35297668-35297687 MsG0180002238.01.T01:intron 35.0%
TCATTAGGATTCTTACCACA+AGG + Chr1:35300217-35300236 MsG0180002238.01.T01:CDS 35.0%
TCTACCATTTGACTCTAACA+AGG + Chr1:35299584-35299603 MsG0180002238.01.T01:intron 35.0%
TGACACGAACCAATACTAAA+TGG - Chr1:35299330-35299349 None:intergenic 35.0%
TGTTTGGGTATGAACAACAA+TGG - Chr1:35296760-35296779 None:intergenic 35.0%
TTCACCAACACCATATAGTA+AGG + Chr1:35297928-35297947 MsG0180002238.01.T01:intron 35.0%
TTCATCTTTGCAGAAATTGC+TGG + Chr1:35300588-35300607 MsG0180002238.01.T01:intron 35.0%
! AAATTTGGAACCGATGAAGA+TGG + Chr1:35300937-35300956 MsG0180002238.01.T01:CDS 35.0%
! AACCTTTGAAAGCATGTTGA+AGG - Chr1:35298019-35298038 None:intergenic 35.0%
! AAGGCCATTATCGCAATTTT+GGG + Chr1:35298588-35298607 MsG0180002238.01.T01:CDS 35.0%
! AAGTTCATCCTCACTCTTTT+GGG + Chr1:35301084-35301103 MsG0180002238.01.T01:CDS 35.0%
! ACCTTTGAAAGCATGTTGAA+GGG - Chr1:35298018-35298037 None:intergenic 35.0%
! CCATATAAAGTACTACGAGA+AGG + Chr1:35300669-35300688 MsG0180002238.01.T01:CDS 35.0%
! CCGCATAAACATCATTTTGT+TGG - Chr1:35299147-35299166 None:intergenic 35.0%
! CTTTAGTGTCTAAAGTGAGT+TGG - Chr1:35298740-35298759 None:intergenic 35.0%
! GGACATTTATTTGGTAACCA+TGG - Chr1:35300824-35300843 None:intergenic 35.0%
! GTTGTAAATCTAAAGCGCTA+GGG - Chr1:35300488-35300507 None:intergenic 35.0%
! TAAAGTACTACGAGAAGGTT+AGG + Chr1:35300674-35300693 MsG0180002238.01.T01:intron 35.0%
! TGCTACAAGTAAAGAGCATA+AGG - Chr1:35297384-35297403 None:intergenic 35.0%
!! ATTCTGGTTCCTTGCAATTA+AGG + Chr1:35299638-35299657 MsG0180002238.01.T01:intron 35.0%
!! ATTTAGTATTGGTTCGTGTC+AGG + Chr1:35299329-35299348 MsG0180002238.01.T01:intron 35.0%
!! ATTTTTCAAACTCTGCAGGA+TGG + Chr1:35298553-35298572 MsG0180002238.01.T01:intron 35.0%
!! GAAAGTGTCAAGGAAAAGAA+AGG + Chr1:35300180-35300199 MsG0180002238.01.T01:CDS 35.0%
!! TTCTGGTTCCTTGCAATTAA+GGG + Chr1:35299639-35299658 MsG0180002238.01.T01:intron 35.0%
!! TTTTTCAAACTCTGCAGGAT+GGG + Chr1:35298554-35298573 MsG0180002238.01.T01:intron 35.0%
!!! AACATGACCTTGTTTTTCAG+AGG + Chr1:35298884-35298903 MsG0180002238.01.T01:intron 35.0%
!!! ACATGACCTTGTTTTTCAGA+GGG + Chr1:35298885-35298904 MsG0180002238.01.T01:intron 35.0%
!!! ATGGTATGCTTTTGGAATTC+TGG + Chr1:35299622-35299641 MsG0180002238.01.T01:intron 35.0%
AACACACCCATTATCTAGCA+TGG - Chr1:35296961-35296980 None:intergenic 40.0%
AACCGTTATAGAGATGAGCA+TGG + Chr1:35300267-35300286 MsG0180002238.01.T01:CDS 40.0%
AATGTGACTTCCAGATACTG+AGG - Chr1:35298354-35298373 None:intergenic 40.0%
ATAATCAAAACCGGCATCGT+GGG - Chr1:35300032-35300051 None:intergenic 40.0%
CATCTTGAACAGGAGATGTT+TGG - Chr1:35296776-35296795 None:intergenic 40.0%
CGTCTGATATCAATCTTCTC+CGG - Chr1:35299500-35299519 None:intergenic 40.0%
GAACGGTCTAAACTCATACT+TGG - Chr1:35299771-35299790 None:intergenic 40.0%
GTGAGCTCATTTAGGTATGA+AGG + Chr1:35300108-35300127 MsG0180002238.01.T01:CDS 40.0%
TATAATCAAAACCGGCATCG+TGG - Chr1:35300033-35300052 None:intergenic 40.0%
TCCAAAATTGGCACAAACTG+AGG + Chr1:35300143-35300162 MsG0180002238.01.T01:CDS 40.0%
TCTTGAAGATGCAGTTTCTG+AGG + Chr1:35301041-35301060 MsG0180002238.01.T01:CDS 40.0%
TGCCATGCTCATCTCTATAA+CGG - Chr1:35300272-35300291 None:intergenic 40.0%
TGCTTTGCATCGAAATGTTC+AGG - Chr1:35298147-35298166 None:intergenic 40.0%
TGGCAACAAAGACTATCATG+TGG + Chr1:35298975-35298994 MsG0180002238.01.T01:CDS 40.0%
TGTGCTTCAATACGAAGTGT+CGG + Chr1:35298273-35298292 MsG0180002238.01.T01:intron 40.0%
TGTGGTCAAAATTGCAGTTG+CGG + Chr1:35299959-35299978 MsG0180002238.01.T01:intron 40.0%
TTGGGTATGAACAACAATGG+TGG - Chr1:35296757-35296776 None:intergenic 40.0%
! AAGTTGATTCTTGCTCCTTG+TGG - Chr1:35300235-35300254 None:intergenic 40.0%
! AGGTGCTATGCTATGTTAGA+AGG - Chr1:35297837-35297856 None:intergenic 40.0%
! AGTTCATCCTCACTCTTTTG+GGG + Chr1:35301085-35301104 MsG0180002238.01.T01:CDS 40.0%
! CAAGGCCATTATCGCAATTT+TGG + Chr1:35298587-35298606 MsG0180002238.01.T01:CDS 40.0%
! CAATTTAAAACCCACGATGC+CGG + Chr1:35300019-35300038 MsG0180002238.01.T01:intron 40.0%
! CGTTGTAAATCTAAAGCGCT+AGG - Chr1:35300489-35300508 None:intergenic 40.0%
! GAAGTTCATCCTCACTCTTT+TGG + Chr1:35301083-35301102 MsG0180002238.01.T01:CDS 40.0%
! GATTTTGAGCAGCTTTTGGT+TGG + Chr1:35300081-35300100 MsG0180002238.01.T01:intron 40.0%
! GCTTGATTTTGAGCAGCTTT+TGG + Chr1:35300077-35300096 MsG0180002238.01.T01:intron 40.0%
! TCTGGTTCCTTGCAATTAAG+GGG + Chr1:35299640-35299659 MsG0180002238.01.T01:intron 40.0%
! TTATGAGGAGCTTTTCGAAG+AGG + Chr1:35298650-35298669 MsG0180002238.01.T01:CDS 40.0%
! TTTTCAAACTCTGCAGGATG+GGG + Chr1:35298555-35298574 MsG0180002238.01.T01:intron 40.0%
!! CAACTGCAATTTTGACCACA+AGG - Chr1:35299959-35299978 None:intergenic 40.0%
!! TTGGATTGGTGAGCTCATTT+AGG + Chr1:35300100-35300119 MsG0180002238.01.T01:CDS 40.0%
AAGGGCTGAAAAGGATCTGA+AGG + Chr1:35300981-35301000 MsG0180002238.01.T01:CDS 45.0%
AATGGTTGCTGGGAGCAATA+AGG - Chr1:35297974-35297993 None:intergenic 45.0%
ACAGACTCGTTAGAGGTAGT+CGG - Chr1:35298382-35298401 None:intergenic 45.0%
ACGCTTGTAGCGGTTATGAT+AGG - Chr1:35299055-35299074 None:intergenic 45.0%
ACTACCTCTAACGAGTCTGT+GGG + Chr1:35298382-35298401 MsG0180002238.01.T01:intron 45.0%
AGAAATCTCCGGTGACTTTG+AGG + Chr1:35298695-35298714 MsG0180002238.01.T01:CDS 45.0%
AGAGTTCGTCGTCACCTATA+TGG - Chr1:35298409-35298428 None:intergenic 45.0%
AGCAGACACATCTTCTTCGA+TGG - Chr1:35299079-35299098 None:intergenic 45.0%
ATCTCCTGTTCAAGATGCTG+AGG + Chr1:35296779-35296798 MsG0180002238.01.T01:CDS 45.0%
ATGGTTGCTGGGAGCAATAA+GGG - Chr1:35297973-35297992 None:intergenic 45.0%
CATGTTTCCCCAAAAGAGTG+AGG - Chr1:35301095-35301114 None:intergenic 45.0%
CGTCTTGAGTCAGAAATCTC+CGG + Chr1:35298684-35298703 MsG0180002238.01.T01:CDS 45.0%
CTTTCGCGAGATGTTAGTGA+TGG + Chr1:35298478-35298497 MsG0180002238.01.T01:intron 45.0%
GAGTCTAGATCCTCAGTATC+TGG + Chr1:35298341-35298360 MsG0180002238.01.T01:intron 45.0%
GATTGTGACAAGGGCTGAAA+AGG + Chr1:35300972-35300991 MsG0180002238.01.T01:CDS 45.0%
GCCCTTCAACATGCTTTCAA+AGG + Chr1:35298014-35298033 MsG0180002238.01.T01:intron 45.0%
GCTATCAACTGAAGAGCTCT+TGG + Chr1:35299017-35299036 MsG0180002238.01.T01:CDS 45.0%
TAGCTGTGTGCAATGTCTTC+TGG - Chr1:35300633-35300652 None:intergenic 45.0%
TCAACTGAGGAATGGTTGCT+GGG - Chr1:35297984-35298003 None:intergenic 45.0%
TGTGTGACCCCTTAATTGCA+AGG - Chr1:35299650-35299669 None:intergenic 45.0%
! ACACAGCCCTCTGAAAAACA+AGG - Chr1:35298894-35298913 None:intergenic 45.0%
! AGTTTCTGAGGAAACCTCAG+GGG + Chr1:35301053-35301072 MsG0180002238.01.T01:CDS 45.0%
! CAGTTTCTGAGGAAACCTCA+GGG + Chr1:35301052-35301071 MsG0180002238.01.T01:CDS 45.0%
! GCCTCAGTTTGTGCCAATTT+TGG - Chr1:35300147-35300166 None:intergenic 45.0%
! GCTCTTCGACTTGCTTTCAA+AGG + Chr1:35296801-35296820 MsG0180002238.01.T01:CDS 45.0%
!! TGAGCAGCTTTTGGTTGGAT+TGG + Chr1:35300086-35300105 MsG0180002238.01.T01:intron 45.0%
!! TTTTTCAGAGGGCTGTGTAC+CGG + Chr1:35298896-35298915 MsG0180002238.01.T01:intron 45.0%
!!! ATGATTTTTTTATTTATAAA+AGG + Chr1:35297229-35297248 MsG0180002238.01.T01:intron 5.0%
!!! TTTAAAACAATTTTTTATAT+GGG + Chr1:35300399-35300418 MsG0180002238.01.T01:intron 5.0%
!!! TTTTAAAACAATTTTTTATA+TGG + Chr1:35300398-35300417 MsG0180002238.01.T01:intron 5.0%
!!! TTTTTAAATTTGATTTTTAT+GGG - Chr1:35297109-35297128 None:intergenic 5.0%
!!! TTTTTTAAATTTGATTTTTA+TGG - Chr1:35297110-35297129 None:intergenic 5.0%
AAAACAGCATCACGGTCTGC+AGG - Chr1:35298934-35298953 None:intergenic 50.0%
AATCTCTGAGTGCAGGGATC+CGG + Chr1:35299842-35299861 MsG0180002238.01.T01:intron 50.0%
ACGAGTCTGTGGGTCCATAT+AGG + Chr1:35298392-35298411 MsG0180002238.01.T01:intron 50.0%
AGAGCCTCAGCATCTTGAAC+AGG - Chr1:35296786-35296805 None:intergenic 50.0%
ATGTTACGACTGCGTGCATG+CGG + Chr1:35299817-35299836 MsG0180002238.01.T01:intron 50.0%
CAGCAACCATTCCTCAGTTG+AGG + Chr1:35297983-35298002 MsG0180002238.01.T01:intron 50.0%
CTCAACTGAGGAATGGTTGC+TGG - Chr1:35297985-35298004 None:intergenic 50.0%
CTTCGATGGAACGCTTGTAG+CGG - Chr1:35299065-35299084 None:intergenic 50.0%
GAACTTCTTGTAGTCCCCTG+AGG - Chr1:35301070-35301089 None:intergenic 50.0%
GACTACCTCTAACGAGTCTG+TGG + Chr1:35298381-35298400 MsG0180002238.01.T01:intron 50.0%
GCACGCAGTCGTAACATCAA+TGG - Chr1:35299814-35299833 None:intergenic 50.0%
GCATGGCATCTCCATTAGCA+AGG + Chr1:35300284-35300303 MsG0180002238.01.T01:CDS 50.0%
GGCAAATTGATGTCATGCCG+TGG - Chr1:35300523-35300542 None:intergenic 50.0%
TAGTTACACGGCGAACCTTG+TGG + Chr1:35299941-35299960 MsG0180002238.01.T01:intron 50.0%
! GCAGTTTCTGAGGAAACCTC+AGG + Chr1:35301051-35301070 MsG0180002238.01.T01:CDS 50.0%
!! AGGATGGGGTGCTGATAACA+AGG + Chr1:35298569-35298588 MsG0180002238.01.T01:intron 50.0%
ACTTGCCTGGCGAAGATGAC+CGG - Chr1:35299109-35299128 None:intergenic 55.0%
CAGCCCTTGTCACAATCACG+CGG - Chr1:35300969-35300988 None:intergenic 55.0%
CGACATCTCTGCATGCCGAA+AGG + Chr1:35300372-35300391 MsG0180002238.01.T01:intron 55.0%
CTGAAGAGCTCTTGGCAGTG+AGG + Chr1:35299025-35299044 MsG0180002238.01.T01:intron 55.0%
CTGCAGGTTCCAACATCCAC+CGG - Chr1:35298918-35298937 None:intergenic 55.0%
GAGCCGCGTGATTGTGACAA+GGG + Chr1:35300963-35300982 MsG0180002238.01.T01:CDS 55.0%
GATGTGTCTGCTCACACCAC+CGG + Chr1:35299087-35299106 MsG0180002238.01.T01:intron 55.0%
GCGGCTCAGTCCATCTTCAT+CGG - Chr1:35300950-35300969 None:intergenic 55.0%
GTGCGTCCTCAACTGAGGAA+TGG - Chr1:35297992-35298011 None:intergenic 55.0%
TGAGCCGCGTGATTGTGACA+AGG + Chr1:35300962-35300981 MsG0180002238.01.T01:CDS 55.0%
TGGACCCACAGACTCGTTAG+AGG - Chr1:35298389-35298408 None:intergenic 55.0%
TGTTACGACTGCGTGCATGC+GGG + Chr1:35299818-35299837 MsG0180002238.01.T01:intron 55.0%
GCGGGGAATCTCTGAGTGCA+GGG + Chr1:35299836-35299855 MsG0180002238.01.T01:intron 60.0%
GGCTTGTGCGTCCTCAACTG+AGG - Chr1:35297997-35298016 None:intergenic 60.0%
GTTACGACTGCGTGCATGCG+GGG + Chr1:35299819-35299838 MsG0180002238.01.T01:intron 60.0%
TGCGGGGAATCTCTGAGTGC+AGG + Chr1:35299835-35299854 MsG0180002238.01.T01:intron 60.0%
TTCAGAGGGCTGTGTACCGG+TGG + Chr1:35298899-35298918 MsG0180002238.01.T01:intron 60.0%
! GGCTGTGTACCGGTGGATGT+TGG + Chr1:35298906-35298925 MsG0180002238.01.T01:CDS 60.0%
CACCACCGGTCATCTTCGCC+AGG + Chr1:35299101-35299120 MsG0180002238.01.T01:intron 65.0%
TGCCTGGCGAAGATGACCGG+TGG - Chr1:35299106-35299125 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 35296750 35301119 35296750 ID=MsG0180002238.01;Name=MsG0180002238.01
Chr1 mRNA 35296750 35301119 35296750 ID=MsG0180002238.01.T01;Parent=MsG0180002238.01;Name=MsG0180002238.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|6|0|287
Chr1 exon 35296750 35296822 35296750 ID=MsG0180002238.01.T01:exon:2150;Parent=MsG0180002238.01.T01
Chr1 exon 35298571 35298716 35298571 ID=MsG0180002238.01.T01:exon:2151;Parent=MsG0180002238.01.T01
Chr1 exon 35298904 35299041 35298904 ID=MsG0180002238.01.T01:exon:2152;Parent=MsG0180002238.01.T01
Chr1 exon 35300093 35300305 35300093 ID=MsG0180002238.01.T01:exon:2153;Parent=MsG0180002238.01.T01
Chr1 exon 35300601 35300690 35300601 ID=MsG0180002238.01.T01:exon:2154;Parent=MsG0180002238.01.T01
Chr1 exon 35300916 35301119 35300916 ID=MsG0180002238.01.T01:exon:2155;Parent=MsG0180002238.01.T01
Chr1 CDS 35296750 35296822 35296750 ID=MsG0180002238.01.T01:cds;Parent=MsG0180002238.01.T01
Chr1 CDS 35298571 35298716 35298571 ID=MsG0180002238.01.T01:cds;Parent=MsG0180002238.01.T01
Chr1 CDS 35298904 35299041 35298904 ID=MsG0180002238.01.T01:cds;Parent=MsG0180002238.01.T01
Chr1 CDS 35300093 35300305 35300093 ID=MsG0180002238.01.T01:cds;Parent=MsG0180002238.01.T01
Chr1 CDS 35300601 35300690 35300601 ID=MsG0180002238.01.T01:cds;Parent=MsG0180002238.01.T01
Chr1 CDS 35300916 35301119 35300916 ID=MsG0180002238.01.T01:cds;Parent=MsG0180002238.01.T01
Gene Sequence

>MsG0180002238.01.T01

ATGGCCACCATTGTTGTTCATACCCAAACATCTCCTGTTCAAGATGCTGAGGCTCTTCGACTTGCTTTCAAAGGATGGGGTGCTGATAACAAGGCCATTATCGCAATTTTGGGTCATAGAAATGTTCATCAGAGGCAACAGATTAGAAAAGCTTATGAGGAGCTTTTCGAAGAGGATCTCATCAAACGTCTTGAGTCAGAAATCTCCGGTGACTTTGAGAGGGCTGTGTACCGGTGGATGTTGGAACCTGCAGACCGTGATGCTGTTTTGATCAATGTAGCAATCAGGAATGGCAACAAAGACTATCATGTGGTTGCTGAAATTGCTTCTGTGCTATCAACTGAAGAGCTCTTGGCACTTTTGGTTGGATTGGTGAGCTCATTTAGGTATGAAGGAGATGAGATCAATCCAAAATTGGCACAAACTGAGGCTAATATTATTCATGAAAGTGTCAAGGAAAAGAAAGGCAACAATGAAGAAGTCATTAGGATTCTTACCACAAGGAGCAAGAATCAACTTGTCGCAACTTTCAACCGTTATAGAGATGAGCATGGCATCTCCATTAGCAAGAAATTGCTGGATCAAACATCTGATGACTTCCAGAAGACATTGCACACAGCTATTCGTTGCATCAACGACCATATAAAGTACTACGAGAAGGTTTTGCGCAATGCAATCAAGAAATTTGGAACCGATGAAGATGGACTGAGCCGCGTGATTGTGACAAGGGCTGAAAAGGATCTGAAGGACATCAAAGAGCTGTACTACAAGAGAAACAGTGTTCATCTTGAAGATGCAGTTTCTGAGGAAACCTCAGGGGACTACAAGAAGTTCATCCTCACTCTTTTGGGGAAACATGATTAA

Protein sequence

>MsG0180002238.01.T01

MATIVVHTQTSPVQDAEALRLAFKGWGADNKAIIAILGHRNVHQRQQIRKAYEELFEEDLIKRLESEISGDFERAVYRWMLEPADRDAVLINVAIRNGNKDYHVVAEIASVLSTEELLALLVGLVSSFRYEGDEINPKLAQTEANIIHESVKEKKGNNEEVIRILTTRSKNQLVATFNRYRDEHGISISKKLLDQTSDDFQKTLHTAIRCINDHIKYYEKVLRNAIKKFGTDEDGLSRVIVTRAEKDLKDIKELYYKRNSVHLEDAVSEETSGDYKKFILTLLGKHD*