AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023103.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023103.01.T01 MTR_8g087310 85.987 314 11 2 5 304 184 478 0.0 533
MsG0480023103.01.T01 MTR_8g087310 85.987 314 11 2 5 304 303 597 0.0 531
MsG0480023103.01.T01 MTR_4g005070 33.043 230 112 7 48 257 344 551 5.87e-18 84.3
MsG0480023103.01.T02 MTR_8g087310 85.987 314 11 2 5 304 184 478 0.0 533
MsG0480023103.01.T02 MTR_8g087310 85.987 314 11 2 5 304 303 597 0.0 531
MsG0480023103.01.T02 MTR_4g005070 33.043 230 112 7 48 257 344 551 5.87e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023103.01.T01 AT4G18810 70.064 314 61 2 5 304 302 596 7.20e-157 451
MsG0480023103.01.T01 AT4G18810 70.645 310 58 2 5 300 302 592 5.75e-156 450
MsG0480023103.01.T01 AT1G16720 32.258 217 131 6 48 257 353 560 2.15e-19 89.0
MsG0480023103.01.T01 AT1G16720 32.258 217 131 6 48 257 353 560 2.24e-19 89.0
MsG0480023103.01.T01 AT1G16720 28.000 250 131 7 48 257 353 593 9.70e-14 72.0
MsG0480023103.01.T01 AT4G31530 36.508 126 55 4 150 260 187 302 1.27e-13 70.9
MsG0480023103.01.T01 AT4G31530 36.508 126 55 4 150 260 187 302 1.40e-13 70.5
MsG0480023103.01.T02 AT4G18810 70.064 314 61 2 5 304 302 596 7.20e-157 451
MsG0480023103.01.T02 AT4G18810 70.645 310 58 2 5 300 302 592 5.75e-156 450
MsG0480023103.01.T02 AT1G16720 32.258 217 131 6 48 257 353 560 2.15e-19 89.0
MsG0480023103.01.T02 AT1G16720 32.258 217 131 6 48 257 353 560 2.24e-19 89.0
MsG0480023103.01.T02 AT1G16720 28.000 250 131 7 48 257 353 593 9.70e-14 72.0
MsG0480023103.01.T02 AT4G31530 36.508 126 55 4 150 260 187 302 1.27e-13 70.9
MsG0480023103.01.T02 AT4G31530 36.508 126 55 4 150 260 187 302 1.40e-13 70.5

Find 31 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGCACCTTATATTT+TGG 0.130745 4:+81011161 None:intergenic
TGTCAAAACAAAATTTATTT+TGG 0.174483 4:+81011262 None:intergenic
ACAGTAAACGGCTCGCTAAA+TGG 0.265812 4:+81011658 None:intergenic
AATTTAAAAGAAGGCATAAC+TGG 0.286249 4:-81011586 MsG0480023103.01.T01:CDS
GTTTGGTCTATATATTTCTT+TGG 0.286532 4:+81011451 None:intergenic
TTTGCTGACTCCAAAATATA+AGG 0.289685 4:-81011171 MsG0480023103.01.T02:three_prime_UTR
CCTGCATTGTAGTTCATCTA+TGG 0.293901 4:-81011522 MsG0480023103.01.T01:three_prime_UTR
CCTTGTTTGCTTTAGCAGAT+AGG 0.354649 4:-81011340 MsG0480023103.01.T01:three_prime_UTR
ACATACATGTATCTTGTATA+AGG 0.368040 4:+81011391 None:intergenic
ATATATAGACCAAACAAATC+TGG 0.379331 4:-81011443 MsG0480023103.01.T01:three_prime_UTR
TATGTTCATAGTACTTAAAC+AGG 0.392561 4:-81011373 MsG0480023103.01.T01:three_prime_UTR
TGAAGTATCCCAGATTTGTT+TGG 0.411324 4:+81011434 None:intergenic
GAAAGTGTGGTGTGGTCGTC+TGG 0.414879 4:+81011290 None:intergenic
AAACAGGCGTAGGACTTTGT+TGG 0.472814 4:+81011551 None:intergenic
ACAATGCAGGAATGTTAAAC+AGG 0.474117 4:+81011535 None:intergenic
TGCTAAAGCAAACAAGGAAA+AGG 0.488102 4:+81011346 None:intergenic
AGAAAATCCTCCTCCAGAAA+AGG 0.489327 4:-81011629 MsG0480023103.01.T01:CDS
TATATAGACCAAACAAATCT+GGG 0.499691 4:-81011442 MsG0480023103.01.T01:three_prime_UTR
CCTATCTGCTAAAGCAAACA+AGG 0.507249 4:+81011340 None:intergenic
CAGGCGTAGGACTTTGTTGG+AGG 0.559077 4:+81011554 None:intergenic
GTTTGCTTTAGCAGATAGGA+AGG 0.561366 4:-81011336 MsG0480023103.01.T01:three_prime_UTR
CCATAGATGAACTACAATGC+AGG 0.571484 4:+81011522 None:intergenic
TAGTTCATCTATGGATATTG+CGG 0.578027 4:-81011513 MsG0480023103.01.T01:three_prime_UTR
AAAAGAAGGCATAACTGGGA+AGG 0.586170 4:-81011581 MsG0480023103.01.T01:CDS
ATTTAGCGAGCCGTTTACTG+TGG 0.591797 4:-81011656 MsG0480023103.01.T01:CDS
ATTTAAAAGAAGGCATAACT+GGG 0.605677 4:-81011585 MsG0480023103.01.T01:CDS
CAGGAATGTTAAACAGGCGT+AGG 0.608389 4:+81011541 None:intergenic
AAGTGAAAATAAATCAGACT+AGG 0.616681 4:+81011215 None:intergenic
AGAAGGCATAACTGGGAAGG+AGG 0.627013 4:-81011578 MsG0480023103.01.T01:CDS
AGGCGTAGGACTTTGTTGGA+GGG 0.638491 4:+81011555 None:intergenic
TGGTTTATGAAAGTGTGGTG+TGG 0.642729 4:+81011282 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGAAAAATTTGAAT+TGG + Chr4:81013039-81013058 None:intergenic 10.0%
!! TTTATAAATAAAATTGGAAA+AGG + Chr4:81012909-81012928 None:intergenic 10.0%
!!! TACTTTAAAAATTTAAAAGA+AGG - Chr4:81013397-81013416 MsG0480023103.01.T01:CDS 10.0%
!!! TCCAATTTTATTTATAAATA+GGG - Chr4:81012911-81012930 MsG0480023103.01.T01:intron 10.0%
!!! TTCCAATTTTATTTATAAAT+AGG - Chr4:81012910-81012929 MsG0480023103.01.T01:intron 10.0%
!! AACTATAGAATAATTATCAA+AGG + Chr4:81013119-81013138 None:intergenic 15.0%
!! ACCCTATTTATAAATAAAAT+TGG + Chr4:81012915-81012934 None:intergenic 15.0%
!! ATTTGAATTGGAAATTATAA+AGG + Chr4:81013027-81013046 None:intergenic 15.0%
!!! TGTCAAAACAAAATTTATTT+TGG + Chr4:81013733-81013752 None:intergenic 15.0%
!!! TTATTTTCACTTTAACATAT+TGG - Chr4:81013788-81013807 MsG0480023103.01.T01:intron 15.0%
!! AAAAGAAGAGTTTACATAAA+TGG - Chr4:81011443-81011462 MsG0480023103.01.T01:three_prime_UTR 20.0%
!! AATTTCAGACGTAATTTAAA+TGG - Chr4:81013084-81013103 MsG0480023103.01.T01:intron 20.0%
!! AGCAAAAAATTAAGCATATA+GGG + Chr4:81012065-81012084 None:intergenic 20.0%
!! ATAAATAGGGTAAAATATCA+AGG - Chr4:81012924-81012943 MsG0480023103.01.T01:intron 20.0%
!! ATTGGAAATTATAAAGGAAA+AGG + Chr4:81013021-81013040 None:intergenic 20.0%
!! TAAATAGGGTAAAATATCAA+GGG - Chr4:81012925-81012944 MsG0480023103.01.T01:intron 20.0%
!! TATATTGTGAGATTAATGTT+TGG + Chr4:81012850-81012869 None:intergenic 20.0%
!! TTACTAGATTCATCTATATA+GGG + Chr4:81013239-81013258 None:intergenic 20.0%
!!! TAAATTAAATGAGACTTTTG+TGG - Chr4:81011927-81011946 MsG0480023103.01.T01:intron 20.0%
!!! TAGTATTTCTTTATGTCTTT+TGG - Chr4:81011824-81011843 MsG0480023103.01.T01:intron 20.0%
! AAGTGAAAATAAATCAGACT+AGG + Chr4:81013780-81013799 None:intergenic 25.0%
! ACATACATGTATCTTGTATA+AGG + Chr4:81013604-81013623 None:intergenic 25.0%
! ACATGATCTATATCTATTTC+AGG - Chr4:81013297-81013316 MsG0480023103.01.T01:intron 25.0%
! ATAAAAATGCTACACATATC+TGG + Chr4:81012447-81012466 None:intergenic 25.0%
! ATATATAGACCAAACAAATC+TGG - Chr4:81013549-81013568 MsG0480023103.01.T01:CDS 25.0%
! CAGCAAAAAATTAAGCATAT+AGG + Chr4:81012066-81012085 None:intergenic 25.0%
! CTGTTTAGATGTTAAAAACT+GGG - Chr4:81012512-81012531 MsG0480023103.01.T01:intron 25.0%
! GTTACTAGATTCATCTATAT+AGG + Chr4:81013240-81013259 None:intergenic 25.0%
! GTTTGGTCTATATATTTCTT+TGG + Chr4:81013544-81013563 None:intergenic 25.0%
! TATATAGACCAAACAAATCT+GGG - Chr4:81013550-81013569 MsG0480023103.01.T01:CDS 25.0%
! TATCCTCACATTTAAACTAA+AGG - Chr4:81012204-81012223 MsG0480023103.01.T01:intron 25.0%
! TATGTTCATAGTACTTAAAC+AGG - Chr4:81013619-81013638 MsG0480023103.01.T01:intron 25.0%
! TCACTTTAATCAAGTACTTT+GGG - Chr4:81011402-81011421 MsG0480023103.01.T01:three_prime_UTR 25.0%
! TGATCAAGGAGATAATATTA+CGG - Chr4:81012776-81012795 MsG0480023103.01.T01:intron 25.0%
! TGTTTAGATGTTAAAAACTG+GGG - Chr4:81012513-81012532 MsG0480023103.01.T01:intron 25.0%
! TTCACTTTAATCAAGTACTT+TGG - Chr4:81011401-81011420 MsG0480023103.01.T01:three_prime_UTR 25.0%
!! AATTTAAAAGAAGGCATAAC+TGG - Chr4:81013406-81013425 MsG0480023103.01.T01:CDS 25.0%
!! ATTTAAAAGAAGGCATAACT+GGG - Chr4:81013407-81013426 MsG0480023103.01.T01:CDS 25.0%
!! CATTTTTATCAACTGAGTAA+TGG - Chr4:81012559-81012578 MsG0480023103.01.T01:intron 25.0%
!! TATTGTTGCACCTTATATTT+TGG + Chr4:81013834-81013853 None:intergenic 25.0%
!!! TATTTTGGTTTATGAAAGTG+TGG + Chr4:81013718-81013737 None:intergenic 25.0%
AACACTATTCTACAATTTCC+AGG + Chr4:81011263-81011282 None:intergenic 30.0%
AGACCACAATACAAAAACAA+TGG - Chr4:81011309-81011328 MsG0480023103.01.T01:three_prime_UTR 30.0%
AGGGATGAAAAAAAGAAGAA+GGG + Chr4:81012046-81012065 None:intergenic 30.0%
CGAAGTGTATGTAATTGTTA+AGG - Chr4:81013195-81013214 MsG0480023103.01.T01:CDS 30.0%
CTTTACAAGTATCAGAACAA+AGG - Chr4:81011201-81011220 MsG0480023103.01.T02:three_prime_UTR 30.0%
GAAAATAAGGCTATATACCT+AGG + Chr4:81012012-81012031 None:intergenic 30.0%
GACCACAATACAAAAACAAT+GGG - Chr4:81011310-81011329 MsG0480023103.01.T01:three_prime_UTR 30.0%
GCAAAAAATAGATGTTTGAG+AGG + Chr4:81012421-81012440 None:intergenic 30.0%
GCTGTTTAGATGTTAAAAAC+TGG - Chr4:81012511-81012530 MsG0480023103.01.T01:intron 30.0%
TAAAGGTAGAAAACTGTTGA+TGG - Chr4:81012221-81012240 MsG0480023103.01.T01:CDS 30.0%
TAAATGATCCAATAACACCT+AGG - Chr4:81011992-81012011 MsG0480023103.01.T01:intron 30.0%
TAGGGATGAAAAAAAGAAGA+AGG + Chr4:81012047-81012066 None:intergenic 30.0%
TAGTTCATCTATGGATATTG+CGG - Chr4:81013479-81013498 MsG0480023103.01.T01:CDS 30.0%
TCATCATTAAAAACAAGCGT+GGG + Chr4:81011861-81011880 None:intergenic 30.0%
TGAATCTAGTAACTTGATTG+TGG - Chr4:81013247-81013266 MsG0480023103.01.T01:CDS 30.0%
TTCAGCAAGTTTGAATATGA+TGG - Chr4:81011904-81011923 MsG0480023103.01.T01:intron 30.0%
TTCATCATTAAAAACAAGCG+TGG + Chr4:81011862-81011881 None:intergenic 30.0%
! AATGTTTTGTCACATGCATA+AGG + Chr4:81012989-81013008 None:intergenic 30.0%
! ATGATGTTTGTTAGTCTACT+TGG - Chr4:81012292-81012311 MsG0480023103.01.T01:CDS 30.0%
! ATGTTTTGTCACATGCATAA+GGG + Chr4:81012988-81013007 None:intergenic 30.0%
! CAAAAGTTGGATACTTTTCT+TGG - Chr4:81012810-81012829 MsG0480023103.01.T01:CDS 30.0%
! CTACCTTTAGTTTAAATGTG+AGG + Chr4:81012210-81012229 None:intergenic 30.0%
! GGTATTGAGAAAACAAAAGT+TGG - Chr4:81012797-81012816 MsG0480023103.01.T01:CDS 30.0%
! TATATGTCATAGTCCTTTTC+TGG + Chr4:81013379-81013398 None:intergenic 30.0%
! TTAAATGAGACTTTTGTGGA+AGG - Chr4:81011931-81011950 MsG0480023103.01.T01:intron 30.0%
! TTTATATCAACTTTTCAGCG+AGG - Chr4:81011237-81011256 MsG0480023103.01.T01:three_prime_UTR 30.0%
!! AATTTGCTAACTGCCAAATA+AGG + Chr4:81012249-81012268 None:intergenic 30.0%
!! TCTTCAGAATTTTTCAGAAC+CGG - Chr4:81011466-81011485 MsG0480023103.01.T01:three_prime_UTR 30.0%
!! TTTGCTGACTCCAAAATATA+AGG - Chr4:81013821-81013840 MsG0480023103.01.T01:CDS 30.0%
!!! AGGTATATAGCCTTATTTTC+TGG - Chr4:81012012-81012031 MsG0480023103.01.T01:CDS 30.0%
AAAAACTGGGGTACATTTAG+TGG - Chr4:81012525-81012544 MsG0480023103.01.T01:intron 35.0%
AAACATCATTCTTTGCAGAC+TGG + Chr4:81012281-81012300 None:intergenic 35.0%
AAGATTTGTACATGTGAGCT+CGG - Chr4:81012099-81012118 MsG0480023103.01.T01:intron 35.0%
ACAATGCAGGAATGTTAAAC+AGG + Chr4:81013460-81013479 None:intergenic 35.0%
ACGACAATTAATGTTGCGAT+AGG - Chr4:81012662-81012681 MsG0480023103.01.T01:intron 35.0%
AGTTCGATTAAACAAGGAAC+TGG - Chr4:81012177-81012196 MsG0480023103.01.T01:intron 35.0%
CGACAATTAATGTTGCGATA+GGG - Chr4:81012663-81012682 MsG0480023103.01.T01:intron 35.0%
CTGTTTACTTAGATCAAGTC+CGG + Chr4:81012149-81012168 None:intergenic 35.0%
CTTGTTTCATCGGCAAATAA+CGG - Chr4:81011175-81011194 MsG0480023103.01.T02:three_prime_UTR 35.0%
GACAATAAATATGCTCGTCA+AGG + Chr4:81011379-81011398 None:intergenic 35.0%
GAGGATTTAATTCGTGAAAG+TGG - Chr4:81012687-81012706 MsG0480023103.01.T01:intron 35.0%
GGAAAGACAACCAGAAAATA+AGG + Chr4:81012025-81012044 None:intergenic 35.0%
TACACTTCGCCTGTATAAAA+TGG + Chr4:81013184-81013203 None:intergenic 35.0%
TCGTGAAATCTGAAAGATTG+AGG - Chr4:81012478-81012497 MsG0480023103.01.T01:intron 35.0%
TGCATGTGACAAAACATTTG+AGG - Chr4:81012991-81013010 MsG0480023103.01.T01:intron 35.0%
TGCTAAAGCAAACAAGGAAA+AGG + Chr4:81013649-81013668 None:intergenic 35.0%
TGCTGAGCTGGTATTTAAAA+TGG - Chr4:81012605-81012624 MsG0480023103.01.T01:intron 35.0%
TGTTTACTTAGATCAAGTCC+GGG + Chr4:81012148-81012167 None:intergenic 35.0%
TTAAATACCAGCTCAGCAAA+TGG + Chr4:81012603-81012622 None:intergenic 35.0%
! ACAGTTTTTGCTCGGAATAT+GGG + Chr4:81011743-81011762 None:intergenic 35.0%
! CATCAGATACAGTTTTTGCT+CGG + Chr4:81011751-81011770 None:intergenic 35.0%
! GCTATATACCTAGGTGTTAT+TGG + Chr4:81012003-81012022 None:intergenic 35.0%
! GCTGAGCTGGTATTTAAAAT+GGG - Chr4:81012606-81012625 MsG0480023103.01.T01:intron 35.0%
! TACAGTTTTTGCTCGGAATA+TGG + Chr4:81011744-81011763 None:intergenic 35.0%
! TATGCTTTTATGCTAGACAC+CGG + Chr4:81011970-81011989 None:intergenic 35.0%
! TGAAGTATCCCAGATTTGTT+TGG + Chr4:81013561-81013580 None:intergenic 35.0%
! TTGGCAGTTAGCAAATTTTC+AGG - Chr4:81012252-81012271 MsG0480023103.01.T01:CDS 35.0%
! TTTTCTGGATCCACAGTAAA+CGG + Chr4:81013349-81013368 None:intergenic 35.0%
!! TAATCCAGGTCTTGTTTCAT+CGG - Chr4:81011165-81011184 MsG0480023103.01.T02:three_prime_UTR 35.0%
!!! AGTGCATTGCCATTTTATAC+AGG - Chr4:81013172-81013191 MsG0480023103.01.T01:intron 35.0%
!!! GACCCATTGTTTTTGTATTG+TGG + Chr4:81011315-81011334 None:intergenic 35.0%
!!! GATTGCCATTTTCTTCTCTT+AGG - Chr4:81011717-81011736 MsG0480023103.01.T01:intron 35.0%
AATGCACTGTGATGTGATTG+TGG + Chr4:81013160-81013179 None:intergenic 40.0%
ACATTGCTTGGATCAAATGG+TGG + Chr4:81011776-81011795 None:intergenic 40.0%
AGAAAATCCTCCTCCAGAAA+AGG - Chr4:81013363-81013382 MsG0480023103.01.T01:intron 40.0%
AGAGAAAGGCAAATGGCAAT+CGG - Chr4:81011610-81011629 MsG0480023103.01.T01:CDS 40.0%
AGTTCCGTCTAAAAGGTGAT+GGG - Chr4:81011516-81011535 MsG0480023103.01.T01:three_prime_UTR 40.0%
ATGGGCCTAAGAGAAGAAAA+TGG + Chr4:81011725-81011744 None:intergenic 40.0%
ATTAATGTTGCGATAGGGTG+AGG - Chr4:81012668-81012687 MsG0480023103.01.T01:intron 40.0%
CCATAGATGAACTACAATGC+AGG + Chr4:81013473-81013492 None:intergenic 40.0%
CCTATCTGCTAAAGCAAACA+AGG + Chr4:81013655-81013674 None:intergenic 40.0%
CCTGCATTGTAGTTCATCTA+TGG - Chr4:81013470-81013489 MsG0480023103.01.T01:CDS 40.0%
GCATTCCATATGTGATTGTG+AGG - Chr4:81012709-81012728 MsG0480023103.01.T01:intron 40.0%
GCTGATCTCATCTTTGATCA+AGG - Chr4:81012762-81012781 MsG0480023103.01.T01:intron 40.0%
GGGTAAAATATCAAGGGAAG+AGG - Chr4:81012931-81012950 MsG0480023103.01.T01:intron 40.0%
GTTTGCTTTAGCAGATAGGA+AGG - Chr4:81013656-81013675 MsG0480023103.01.T01:intron 40.0%
TCCTGCAGTTCGATTAAACA+AGG - Chr4:81012171-81012190 MsG0480023103.01.T01:intron 40.0%
TCTCTCTGCATATGATGGTT+TGG - Chr4:81011493-81011512 MsG0480023103.01.T01:three_prime_UTR 40.0%
TGGCAATCGAATCTGTGAAA+AGG + Chr4:81011705-81011724 None:intergenic 40.0%
TTGACACAGAGAAAGGCAAA+TGG - Chr4:81011603-81011622 MsG0480023103.01.T01:CDS 40.0%
TTGTTTAATCGAACTGCAGG+AGG + Chr4:81012172-81012191 None:intergenic 40.0%
! AAAAGAAGGCATAACTGGGA+AGG - Chr4:81013411-81013430 MsG0480023103.01.T01:CDS 40.0%
! ATAGGCTTTGACACAGAGAA+AGG - Chr4:81011596-81011615 MsG0480023103.01.T01:CDS 40.0%
! ATGTCATAGTCCTTTTCTGG+AGG + Chr4:81013376-81013395 None:intergenic 40.0%
! CCTTGTTTGCTTTAGCAGAT+AGG - Chr4:81013652-81013671 MsG0480023103.01.T01:intron 40.0%
! TCCTTGTTTAATCGAACTGC+AGG + Chr4:81012175-81012194 None:intergenic 40.0%
! TGGTTTATGAAAGTGTGGTG+TGG + Chr4:81013713-81013732 None:intergenic 40.0%
!! ACTGTTGATGGCTCCTTATT+TGG - Chr4:81012233-81012252 MsG0480023103.01.T01:CDS 40.0%
!! TCAGAATTTTTCAGAACCGG+AGG - Chr4:81011469-81011488 MsG0480023103.01.T01:three_prime_UTR 40.0%
!! TTTTCTGGAGGAGGATTTTC+TGG + Chr4:81013364-81013383 None:intergenic 40.0%
AAACAGGCGTAGGACTTTGT+TGG + Chr4:81013444-81013463 None:intergenic 45.0%
AACAAGCGTGGGAGATTACA+AGG + Chr4:81011850-81011869 None:intergenic 45.0%
AAGCAATGTCGCATCATTGC+AGG - Chr4:81011787-81011806 MsG0480023103.01.T01:intron 45.0%
ACAGTAAACGGCTCGCTAAA+TGG + Chr4:81013337-81013356 None:intergenic 45.0%
ATTTAGCGAGCCGTTTACTG+TGG - Chr4:81013336-81013355 MsG0480023103.01.T01:intron 45.0%
ATTTGTACATGTGAGCTCGG+CGG - Chr4:81012102-81012121 MsG0480023103.01.T01:intron 45.0%
CAAGGCCTCACAATCACATA+TGG + Chr4:81012717-81012736 None:intergenic 45.0%
CAGGAATGTTAAACAGGCGT+AGG + Chr4:81013454-81013473 None:intergenic 45.0%
GAGGATCTCTCTGCATATGA+TGG - Chr4:81011488-81011507 MsG0480023103.01.T01:three_prime_UTR 45.0%
GAGTTCCGTCTAAAAGGTGA+TGG - Chr4:81011515-81011534 MsG0480023103.01.T01:three_prime_UTR 45.0%
GATGCTCTTGGGTACACTAT+AGG - Chr4:81011578-81011597 MsG0480023103.01.T01:CDS 45.0%
GCGACATTGCTTGGATCAAA+TGG + Chr4:81011779-81011798 None:intergenic 45.0%
GGTTCCTCAGTTAATGCACA+AGG + Chr4:81012735-81012754 None:intergenic 45.0%
GTTTCATCGGCAAATAACGG+TGG - Chr4:81011178-81011197 MsG0480023103.01.T02:three_prime_UTR 45.0%
TCATATGCAGAGAGATCCTC+CGG + Chr4:81011488-81011507 None:intergenic 45.0%
TGCAATGATGCGACATTGCT+TGG + Chr4:81011788-81011807 None:intergenic 45.0%
TTTGCCGATGAAACAAGACC+TGG + Chr4:81011172-81011191 None:intergenic 45.0%
! GCAAATTCCATTTGCTGAGC+TGG - Chr4:81012593-81012612 MsG0480023103.01.T01:intron 45.0%
! GGTTTGGAGTTCCGTCTAAA+AGG - Chr4:81011509-81011528 MsG0480023103.01.T01:three_prime_UTR 45.0%
! TACGCCCATCACCTTTTAGA+CGG + Chr4:81011523-81011542 None:intergenic 45.0%
!! TCATAGTCCTTTTCTGGAGG+AGG + Chr4:81013373-81013392 None:intergenic 45.0%
AAGATGAGATCAGCTCCAGC+AGG + Chr4:81012756-81012775 None:intergenic 50.0%
AGGCGTAGGACTTTGTTGGA+GGG + Chr4:81013440-81013459 None:intergenic 50.0%
ATGTCGCATCATTGCAGGCA+TGG - Chr4:81011792-81011811 MsG0480023103.01.T01:intron 50.0%
CTAGACACCGGAAGCTCAAA+CGG + Chr4:81011958-81011977 None:intergenic 50.0%
GCATTAACTGAGGAACCTGC+TGG - Chr4:81012738-81012757 MsG0480023103.01.T01:intron 50.0%
TTTGTACATGTGAGCTCGGC+GGG - Chr4:81012103-81012122 MsG0480023103.01.T01:intron 50.0%
! AGAAGGCATAACTGGGAAGG+AGG - Chr4:81013414-81013433 MsG0480023103.01.T01:CDS 50.0%
! ATCAACTTTTCAGCGAGGCC+TGG - Chr4:81011242-81011261 MsG0480023103.01.T01:intron 50.0%
! GAGGCCTTGTGCATTAACTG+AGG - Chr4:81012728-81012747 MsG0480023103.01.T01:intron 50.0%
! TGGTCTCTAGTTCGCAAGAC+TGG - Chr4:81012312-81012331 MsG0480023103.01.T01:intron 50.0%
!! TGTTCGCACAAGCGCTGATT+GGG - Chr4:81011556-81011575 MsG0480023103.01.T01:CDS 50.0%
!! TTGTTCGCACAAGCGCTGAT+TGG - Chr4:81011555-81011574 MsG0480023103.01.T01:CDS 50.0%
AAGTGCAGCTACGCACATGC+GGG + Chr4:81012960-81012979 None:intergenic 55.0%
AGATCAAGTCCGGGCCTTTC+CGG + Chr4:81012139-81012158 None:intergenic 55.0%
CAAGTGCAGCTACGCACATG+CGG + Chr4:81012961-81012980 None:intergenic 55.0%
CAGGCGTAGGACTTTGTTGG+AGG + Chr4:81013441-81013460 None:intergenic 55.0%
GGAAGGTCCGTTTGAGCTTC+CGG - Chr4:81011948-81011967 MsG0480023103.01.T01:intron 55.0%
! GAAAGTGTGGTGTGGTCGTC+TGG + Chr4:81013705-81013724 None:intergenic 55.0%
!! AGCGCTGATTGGGATGCTCT+TGG - Chr4:81011566-81011585 MsG0480023103.01.T01:CDS 55.0%
!! GCGCTGATTGGGATGCTCTT+GGG - Chr4:81011567-81011586 MsG0480023103.01.T01:CDS 55.0%
CGGGAGTTACCAGACCGGAA+AGG - Chr4:81012122-81012141 MsG0480023103.01.T01:intron 60.0%
GTTACCAGACCGGAAAGGCC+CGG - Chr4:81012127-81012146 MsG0480023103.01.T01:intron 60.0%
AAGTCCGGGCCTTTCCGGTC+TGG + Chr4:81012134-81012153 None:intergenic 65.0%
CTCGGCGGGAGTTACCAGAC+CGG - Chr4:81012117-81012136 MsG0480023103.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 81011160 81013854 81011160 ID=MsG0480023103.01;Name=MsG0480023103.01
Chr4 mRNA 81011214 81013854 81011214 ID=MsG0480023103.01.T01;Parent=MsG0480023103.01;Name=MsG0480023103.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.75|0.55|1|0.75|0.55|9|289|304
Chr4 exon 81011214 81011260 81011214 ID=MsG0480023103.01.T01:exon:11367;Parent=MsG0480023103.01.T01
Chr4 exon 81011307 81011695 81011307 ID=MsG0480023103.01.T01:exon:11366;Parent=MsG0480023103.01.T01
Chr4 CDS 81013792 81013854 81013792 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 CDS 81013383 81013598 81013383 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 CDS 81013193 81013301 81013193 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 CDS 81013001 81013061 81013001 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 CDS 81012789 81012912 81012789 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 CDS 81012217 81012330 81012217 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 CDS 81012002 81012082 81012002 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 CDS 81011549 81011695 81011549 ID=MsG0480023103.01.T01:cds;Parent=MsG0480023103.01.T01
Chr4 three_prime_UTR 81011307 81011548 81011307 ID=MsG0480023103.01.T01:three_prime_utr;Parent=MsG0480023103.01.T01
Chr4 three_prime_UTR 81011214 81011260 81011214 ID=MsG0480023103.01.T01:three_prime_utr;Parent=MsG0480023103.01.T01
Chr4 mRNA 81011160 81013854 81011160 ID=MsG0480023103.01.T02;Parent=MsG0480023103.01;Name=MsG0480023103.01.T02;_AED=0.49;_eAED=0.52;_QI=0|0.71|0.5|1|0.85|0.75|8|389|304
Chr4 exon 81011160 81011695 81011160 ID=MsG0480023103.01.T02:exon:11368;Parent=MsG0480023103.01.T02
Chr4 CDS 81013792 81013854 81013792 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 CDS 81013383 81013598 81013383 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 CDS 81013193 81013301 81013193 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 CDS 81013001 81013061 81013001 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 CDS 81012789 81012912 81012789 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 CDS 81012217 81012330 81012217 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 CDS 81012002 81012082 81012002 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 CDS 81011549 81011695 81011549 ID=MsG0480023103.01.T02:cds;Parent=MsG0480023103.01.T02
Chr4 three_prime_UTR 81011160 81011548 81011160 ID=MsG0480023103.01.T02:three_prime_utr;Parent=MsG0480023103.01.T02
Gene Sequence

>MsG0480023103.01.T01

TTGTCTAATCCAGGTCTTGTTTCATCGGCAAATAACGGTGGCTTTACAAGTATCAGAACAAAGTACTTTGGGAAACTAAGTTCTAAAATGAAAAGAAGAGTTTACATAAATGGTCTTCAGAATTTTTCAGAACCGGAGGATCTCTCTGCATATGATGGTTTGGAGTTCCGTCTAAAAGGTGATGGGCGTAGATATAAAGTCATTGTTCGCACAAGCGCTGATTGGGATGCTCTTGGGTACACTATAGGCTTTGACACAGAGAAAGGCAAATGGCAATCGATTCGATTGCCATTTTCTTCTCTTAGGCCCATATTCCGAGCAAAAACTGTATCTGATGCTCCACCATTTGATCCAAGCAATGTCGCATCATTGCAGGCATGGCTCTGCTGTCCGTTTGAGCTTCCGGTGTCTAGCATAAAAGCATATATAAATGATCCAATAACACCTAGATTTGTACATGTGAGCTCGGCGGGAGTTACCAGACCGGAAAGGCCCGGACTTGATCTAAGTAAACAGCCTCCTGCAGTTCGATTAAACAAGGAACTGGATTATATCCTCACATTTAAACTAAAGGGTGAGGATTTAATTCGTGAAAGTGGCATTCCATATGTGATTGTGAGGCCTTGTGCATTAACTGAGGAACCTGCTGGAGCTGATCTCATCTTTGATCAAGGAGATAATATTACGGGTAAAATATCAAGGGAAGAGGTTGCCCGCATGTGCGTAGCTGCACTTGACAGCCCTTATGCATGTGACAAAACATTTGAGGTCAAAAGTGTTATTCCATTTAGCGAGCCGTTTACTGTGGATCCAGAAAATCCTCCTCCAGAAAAGGACTATGACATATACTTTAAAAATTTAAAAGAAGGCATAACTGGGAAGGAGGCCCTCCAACAAAGTCCTACGCCTGTTTAA

>MsG0480023103.01.T02

TTGTCTAATCCAGGTCTTGTTTCATCGGCAAATAACGGTGGCTTTACAAGTATCAGAACAAAGTACTTTGGGAAACTAAGTTCTAAAATGAAAAGAAGAGTTTACATAAATGGTCTTCAGAATTTTTCAGAACCGGAGGATCTCTCTGCATATGATGGTTTGGAGTTCCGTCTAAAAGGTGATGGGCGTAGATATAAAGTCATTGTTCGCACAAGCGCTGATTGGGATGCTCTTGGGTACACTATAGGCTTTGACACAGAGAAAGGCAAATGGCAATCGATTCGATTGCCATTTTCTTCTCTTAGGCCCATATTCCGAGCAAAAACTGTATCTGATGCTCCACCATTTGATCCAAGCAATGTCGCATCATTGCAGGCATGGCTCTGCTGTCCGTTTGAGCTTCCGGTGTCTAGCATAAAAGCATATATAAATGATCCAATAACACCTAGATTTGTACATGTGAGCTCGGCGGGAGTTACCAGACCGGAAAGGCCCGGACTTGATCTAAGTAAACAGCCTCCTGCAGTTCGATTAAACAAGGAACTGGATTATATCCTCACATTTAAACTAAAGGGTGAGGATTTAATTCGTGAAAGTGGCATTCCATATGTGATTGTGAGGCCTTGTGCATTAACTGAGGAACCTGCTGGAGCTGATCTCATCTTTGATCAAGGAGATAATATTACGGGTAAAATATCAAGGGAAGAGGTTGCCCGCATGTGCGTAGCTGCACTTGACAGCCCTTATGCATGTGACAAAACATTTGAGGTCAAAAGTGTTATTCCATTTAGCGAGCCGTTTACTGTGGATCCAGAAAATCCTCCTCCAGAAAAGGACTATGACATATACTTTAAAAATTTAAAAGAAGGCATAACTGGGAAGGAGGCCCTCCAACAAAGTCCTACGCCTGTTTAA

Protein sequence

>MsG0480023103.01.T01

LSNPGLVSSANNGGFTSIRTKYFGKLSSKMKRRVYINGLQNFSEPEDLSAYDGLEFRLKGDGRRYKVIVRTSADWDALGYTIGFDTEKGKWQSIRLPFSSLRPIFRAKTVSDAPPFDPSNVASLQAWLCCPFELPVSSIKAYINDPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRLNKELDYILTFKLKGEDLIRESGIPYVIVRPCALTEEPAGADLIFDQGDNITGKISREEVARMCVAALDSPYACDKTFEVKSVIPFSEPFTVDPENPPPEKDYDIYFKNLKEGITGKEALQQSPTPV*

>MsG0480023103.01.T02

LSNPGLVSSANNGGFTSIRTKYFGKLSSKMKRRVYINGLQNFSEPEDLSAYDGLEFRLKGDGRRYKVIVRTSADWDALGYTIGFDTEKGKWQSIRLPFSSLRPIFRAKTVSDAPPFDPSNVASLQAWLCCPFELPVSSIKAYINDPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRLNKELDYILTFKLKGEDLIRESGIPYVIVRPCALTEEPAGADLIFDQGDNITGKISREEVARMCVAALDSPYACDKTFEVKSVIPFSEPFTVDPENPPPEKDYDIYFKNLKEGITGKEALQQSPTPV*