AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047666.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047666.01.T01 MTR_4g132450 97.966 295 6 0 37 331 40 334 0.0 612
MsG0880047666.01.T01 MTR_2g023970 78.041 296 63 2 37 331 26 320 3.77e-171 478
MsG0880047666.01.T01 MTR_4g123700 33.333 243 136 12 32 266 31 255 3.38e-27 108
MsG0880047666.01.T01 MTR_8g090055 28.137 263 143 11 38 280 33 269 2.01e-21 92.8
MsG0880047666.01.T01 MTR_5g037310 27.338 278 166 12 38 295 30 291 2.52e-16 78.6
MsG0880047666.01.T01 MTR_5g037310 27.338 278 166 12 38 295 30 291 2.72e-16 78.6
MsG0880047666.01.T01 MTR_4g105550 24.823 282 172 10 39 295 36 302 2.52e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047666.01.T01 AT1G11915 66.555 299 94 6 37 331 33 329 1.07e-131 379
MsG0880047666.01.T01 AT3G17350 31.557 244 140 11 37 268 33 261 1.68e-21 93.2
MsG0880047666.01.T01 AT3G17350 31.557 244 140 11 37 268 33 261 2.40e-21 92.4
MsG0880047666.01.T01 AT1G10380 30.522 249 150 10 38 273 32 270 7.41e-17 80.1
MsG0880047666.01.T01 AT1G10380 30.924 249 149 10 38 273 32 270 7.67e-17 80.1
MsG0880047666.01.T01 AT5G50290 26.718 262 162 9 31 274 18 267 4.91e-15 75.1

Find 59 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTGCTATTTCAGCTTT+TGG 0.228291 8:+89410408 MsG0880047666.01.T01:CDS
TTGGAATTGGAGGTGGTATT+TGG 0.228294 8:+89410436 MsG0880047666.01.T01:CDS
CAAGTTATGCTAGTGTTTAT+TGG 0.239276 8:+89409703 MsG0880047666.01.T01:CDS
TATGATCAAGTTCCTCAATA+TGG 0.240179 8:+89409750 MsG0880047666.01.T01:CDS
CTTTGAACTCCACATGTTAC+TGG 0.265726 8:-89410486 None:intergenic
AACATGTTTCCCACGTAGTT+TGG 0.276977 8:-89406771 None:intergenic
CTCAAAGATTCAGTAGCTTT+AGG 0.294315 8:-89409660 None:intergenic
CAACCATCATCAATGGAAAA+AGG 0.298240 8:-89409240 None:intergenic
GAAAGAATGAATCTGTAATA+TGG 0.324413 8:-89409270 None:intergenic
ACAAGTTCCACCACCACCTT+TGG 0.367403 8:-89409832 None:intergenic
TGTTCACAAAACACAGGCTT+TGG 0.373458 8:-89409531 None:intergenic
ACATGTTTCCCACGTAGTTT+GGG 0.388958 8:-89406770 None:intergenic
TGTTGAAGGTGCGTTTGTAT+TGG 0.390410 8:+89406747 MsG0880047666.01.T01:CDS
CAAGATGAATCACAGTGTTC+AGG 0.400798 8:-89409558 None:intergenic
GTGCTTGTGTCTAAACTAAA+TGG 0.403773 8:-89409438 None:intergenic
AGGAATGTCCATGTAATTGC+AGG 0.403998 8:+89410260 MsG0880047666.01.T01:CDS
CTAAAGCTACTGAATCTTTG+AGG 0.411355 8:+89409661 MsG0880047666.01.T01:CDS
ATGATCAAGTTCCTCAATAT+GGG 0.412810 8:+89409751 MsG0880047666.01.T01:CDS
CTTGAACTAAGAACACCTTC+TGG 0.415837 8:+89409312 MsG0880047666.01.T01:CDS
TTCAATCACCTGCAATTACA+TGG 0.419145 8:-89410268 None:intergenic
GCTGATGGTATTGCTGCAAC+TGG 0.420697 8:+89406709 MsG0880047666.01.T01:CDS
TGAAGACACCGCGTCGTCAC+TGG 0.426939 8:-89409795 None:intergenic
GAGTTTCTTGTGTTTATGTA+AGG 0.427897 8:+89409875 MsG0880047666.01.T01:CDS
TATTGAGGAACTTGATCATA+AGG 0.446946 8:-89409747 None:intergenic
TTTGGAGCACTTGGAATTGG+AGG 0.470180 8:+89410426 MsG0880047666.01.T01:CDS
TCTTCACAGTTCCACATGAA+TGG 0.472468 8:-89409390 None:intergenic
AATTTCACTACTCATTGTAA+TGG 0.476094 8:+89409903 MsG0880047666.01.T01:CDS
ATATAGCTAACATTATGAAT+AGG 0.481905 8:-89409342 None:intergenic
GCTGAAATGCAACGTTGATA+AGG 0.483270 8:+89406675 MsG0880047666.01.T01:CDS
TCTAAACTAAATGGTCTTGT+TGG 0.485018 8:-89409429 None:intergenic
GACGCGGTGTCTTCAATGTC+AGG 0.485220 8:+89409803 MsG0880047666.01.T01:CDS
GAGTTCAAAGCAATGAGAAC+AGG 0.485646 8:+89410499 MsG0880047666.01.T01:CDS
AGTGTTTATTGGAGAAATGT+TGG 0.491654 8:+89409714 MsG0880047666.01.T01:CDS
TTCTTGTGTTTATGTAAGGA+AGG 0.498390 8:+89409879 MsG0880047666.01.T01:CDS
AAGGCATTTCTTAGAGCTGA+TGG 0.499363 8:+89406694 MsG0880047666.01.T01:CDS
GATCAATCCAAAGGTGGTGG+TGG 0.501256 8:+89409825 MsG0880047666.01.T01:CDS
ATGATAATGCAAGGCACAGT+AGG 0.505376 8:+89410240 MsG0880047666.01.T01:CDS
GGTATTGCTGCAACTGGATG+TGG 0.508868 8:+89406715 MsG0880047666.01.T01:CDS
AAAAGGATATTGGATTGGAA+TGG 0.522600 8:-89409223 None:intergenic
GGAGCACTTGGAATTGGAGG+TGG 0.523403 8:+89410429 MsG0880047666.01.T01:CDS
TGTGGTGTTTGCGATGTTGA+AGG 0.530804 8:+89406733 MsG0880047666.01.T01:CDS
ACTTCCACAACCATCATCAA+TGG 0.544706 8:-89409247 None:intergenic
ATCCTTTGTAGAACTTCATG+TGG 0.569230 8:+89409198 MsG0880047666.01.T01:intron
AAAGGTGGTGGTGGAACTTG+TGG 0.581771 8:+89409834 MsG0880047666.01.T01:CDS
CAGGATCAATCCAAAGGTGG+TGG 0.583668 8:+89409822 MsG0880047666.01.T01:CDS
TCAACTCTAATCCCATATTG+AGG 0.585217 8:-89409762 None:intergenic
GGAAATTGTTCACAAAACAC+AGG 0.597733 8:-89409537 None:intergenic
TAGTCACCGATCCATTCATG+TGG 0.610507 8:+89409379 MsG0880047666.01.T01:CDS
ACAGTTCCACATGAATGGAT+CGG 0.611522 8:-89409385 None:intergenic
TTGATATTCCAGTGACGACG+CGG 0.620201 8:+89409787 MsG0880047666.01.T01:CDS
TGGCAGATCATGATAATGCA+AGG 0.621886 8:+89410231 MsG0880047666.01.T01:intron
TGAATAGGATATCTTCCAGA+AGG 0.622548 8:-89409327 None:intergenic
GGAACTTGATCATAAGGCTG+AGG 0.624162 8:-89409741 None:intergenic
GCTAAAGAACCAGTAACATG+TGG 0.630947 8:+89410477 MsG0880047666.01.T01:CDS
CTCATAGCAAAAGAACACTC+TGG 0.643337 8:-89409612 None:intergenic
CAATGTCAGGATCAATCCAA+AGG 0.643953 8:+89409816 MsG0880047666.01.T01:CDS
GGATCGGTGACTAAAATGTG+TGG 0.665773 8:-89409369 None:intergenic
TTCATGTGGAACTGTGAAGA+CGG 0.666043 8:+89409393 MsG0880047666.01.T01:CDS
TGTCAGGATCAATCCAAAGG+TGG 0.681857 8:+89409819 MsG0880047666.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATATAGATAACTTTT+AGG - Chr8:89407257-89407276 None:intergenic 10.0%
!!! AATTAGAAATGTAATATTTT+TGG + Chr8:89407582-89407601 MsG0880047666.01.T01:intron 10.0%
!!! ATTTTGATTAAAAAAAGAAT+TGG - Chr8:89408599-89408618 None:intergenic 10.0%
!!! CAATGTATTATATTATTTTT+GGG + Chr8:89408470-89408489 MsG0880047666.01.T01:intron 10.0%
!!! TCAATGTATTATATTATTTT+TGG + Chr8:89408469-89408488 MsG0880047666.01.T01:intron 10.0%
!!! TGATTTTGAATTAATTTAAT+TGG + Chr8:89410194-89410213 MsG0880047666.01.T01:intron 10.0%
!! AAAATAAAATGCATATATAC+CGG - Chr8:89407952-89407971 None:intergenic 15.0%
!! AACAATAGAAATCAAAATAA+AGG + Chr8:89407204-89407223 MsG0880047666.01.T01:intron 15.0%
!! AATTGGATTTATTATTTGTT+TGG + Chr8:89410211-89410230 MsG0880047666.01.T01:intron 15.0%
!! CTATAAGCATAATAATAATT+AGG - Chr8:89408188-89408207 None:intergenic 15.0%
!!! AAAAAAAGAATTGGTAATTA+TGG - Chr8:89408590-89408609 None:intergenic 15.0%
!!! AGATATCAAAATAATTTTCA+GGG + Chr8:89407096-89407115 MsG0880047666.01.T01:intron 15.0%
!!! ATATATGCATTTTATTTTTC+TGG + Chr8:89407954-89407973 MsG0880047666.01.T01:intron 15.0%
!!! ATTATTGATAGTAATAAGAT+TGG - Chr8:89409135-89409154 None:intergenic 15.0%
!!! TACTTTTTTAATCATGTTAT+TGG + Chr8:89409991-89410010 MsG0880047666.01.T01:intron 15.0%
!!! TAGATATCAAAATAATTTTC+AGG + Chr8:89407095-89407114 MsG0880047666.01.T01:intron 15.0%
!!! TTAATTAATCTTATTTTTGC+AGG + Chr8:89406875-89406894 MsG0880047666.01.T01:intron 15.0%
!! AAATAAAATGCATATATACC+GGG - Chr8:89407951-89407970 None:intergenic 20.0%
!! AAGAATTTGTATATGCATAA+AGG - Chr8:89407350-89407369 None:intergenic 20.0%
!! ATATAGCTAACATTATGAAT+AGG - Chr8:89409345-89409364 None:intergenic 20.0%
!! ATGATTATTAGATAGATAGT+AGG - Chr8:89408507-89408526 None:intergenic 20.0%
!! TACATATAACGATATAACAA+TGG + Chr8:89407431-89407450 MsG0880047666.01.T01:intron 20.0%
!! TATTGAGATTATCATTTCAT+GGG + Chr8:89407500-89407519 MsG0880047666.01.T01:intron 20.0%
!! TTATTGAGATTATCATTTCA+TGG + Chr8:89407499-89407518 MsG0880047666.01.T01:intron 20.0%
!! TTTAAAAAAAGTGGTAATTG+TGG + Chr8:89408552-89408571 MsG0880047666.01.T01:intron 20.0%
!!! AAAAGTTTTATTCCTCATAA+AGG - Chr8:89408248-89408267 None:intergenic 20.0%
!!! AACTATTGAGTAACAATTTT+TGG + Chr8:89410170-89410189 MsG0880047666.01.T01:intron 20.0%
!!! ATAAGATTGGTTTTTGTTTT+TGG - Chr8:89409122-89409141 None:intergenic 20.0%
!!! ATAGATAGTAGGAATTTTTA+TGG - Chr8:89408496-89408515 None:intergenic 20.0%
!!! CTTTTAATAAAGTATTGATG+AGG + Chr8:89407607-89407626 MsG0880047666.01.T01:intron 20.0%
!!! GAATAAAACTTTTTGTAAGA+GGG + Chr8:89408255-89408274 MsG0880047666.01.T01:intron 20.0%
!!! TAAGATTGGTTTTTGTTTTT+GGG - Chr8:89409121-89409140 None:intergenic 20.0%
!!! TTTTATTTTTCTGGAACAAT+TGG + Chr8:89407963-89407982 MsG0880047666.01.T01:intron 20.0%
! AACGGAATAATAAAAGCAAA+AGG + Chr8:89408934-89408953 MsG0880047666.01.T01:intron 25.0%
! AATTAACATTCACAAAGTCA+TGG + Chr8:89410310-89410329 MsG0880047666.01.T01:intron 25.0%
! AATTTCACTACTCATTGTAA+TGG + Chr8:89409903-89409922 MsG0880047666.01.T01:CDS 25.0%
! ACAAAAAAACGTGTAAATTC+CGG - Chr8:89408826-89408845 None:intergenic 25.0%
! AGTTTAAACATTGTGTATTG+CGG + Chr8:89408670-89408689 MsG0880047666.01.T01:intron 25.0%
! ATTGAAATATTTGAGAGTCA+TGG - Chr8:89408165-89408184 None:intergenic 25.0%
! GAAAATTAAGCTTATGTTTG+TGG + Chr8:89410344-89410363 MsG0880047666.01.T01:intron 25.0%
! GAAAGAATGAATCTGTAATA+TGG - Chr8:89409273-89409292 None:intergenic 25.0%
! GATAATCTCAATAAGACTAA+AGG - Chr8:89407493-89407512 None:intergenic 25.0%
! GTAAAATATACATCGAAGTA+TGG + Chr8:89407226-89407245 MsG0880047666.01.T01:intron 25.0%
! TATGGAATTAAATGAAATCC+TGG - Chr8:89408115-89408134 None:intergenic 25.0%
! TCACAATCACAAGATAAAAT+AGG - Chr8:89409950-89409969 None:intergenic 25.0%
! TTCATTGTTGTGTAATAGAA+CGG + Chr8:89408365-89408384 MsG0880047666.01.T01:intron 25.0%
!! CTTTTATTATTCCGTTACTA+TGG - Chr8:89408930-89408949 None:intergenic 25.0%
!! GGAATAAAACTTTTTGTAAG+AGG + Chr8:89408254-89408273 MsG0880047666.01.T01:intron 25.0%
!!! ATAATTTTCAGGGAAGTAAA+AGG + Chr8:89407106-89407125 MsG0880047666.01.T01:intron 25.0%
!!! GGATATATTTTTGTTACTAG+TGG - Chr8:89408647-89408666 None:intergenic 25.0%
!!! TATATTTTTGTTACTAGTGG+CGG - Chr8:89408644-89408663 None:intergenic 25.0%
AAAAAAAGTGGTAATTGTGG+CGG + Chr8:89408555-89408574 MsG0880047666.01.T01:intron 30.0%
AAGTGTAAGACAAAGAGATA+TGG - Chr8:89408133-89408152 None:intergenic 30.0%
AATCAAAATGCGAGAATTCT+GGG + Chr8:89408610-89408629 MsG0880047666.01.T01:intron 30.0%
AATTTGTAAGATCCTGCATA+TGG - Chr8:89407556-89407575 None:intergenic 30.0%
ACTAATGTGAGATTATTGTG+TGG + Chr8:89407467-89407486 MsG0880047666.01.T01:intron 30.0%
ACTTAGTCTACTACTTTGAT+TGG + Chr8:89407033-89407052 MsG0880047666.01.T01:intron 30.0%
AGTGTTTATTGGAGAAATGT+TGG + Chr8:89409714-89409733 MsG0880047666.01.T01:CDS 30.0%
ATACACAATGTTTAAACTGG+CGG - Chr8:89408668-89408687 None:intergenic 30.0%
ATCAAACCAGTTCATATGAA+AGG + Chr8:89407294-89407313 MsG0880047666.01.T01:intron 30.0%
ATGATCAAGTTCCTCAATAT+GGG + Chr8:89409751-89409770 MsG0880047666.01.T01:CDS 30.0%
ATGGAAAAAGGATATTGGAT+TGG - Chr8:89409231-89409250 None:intergenic 30.0%
ATTTGTAAGATCCTGCATAT+GGG - Chr8:89407555-89407574 None:intergenic 30.0%
CAAGTTATGCTAGTGTTTAT+TGG + Chr8:89409703-89409722 MsG0880047666.01.T01:CDS 30.0%
CATCAATGGAAAAAGGATAT+TGG - Chr8:89409236-89409255 None:intergenic 30.0%
CGTTATATGTACTACCTAAA+GGG - Chr8:89407422-89407441 None:intergenic 30.0%
GAGTTTCTTGTGTTTATGTA+AGG + Chr8:89409875-89409894 MsG0880047666.01.T01:CDS 30.0%
GATTAAAGAAGCCATAGTAA+CGG + Chr8:89408916-89408935 MsG0880047666.01.T01:intron 30.0%
GCAATACACAATGTTTAAAC+TGG - Chr8:89408671-89408690 None:intergenic 30.0%
GGAATAATAAAAGCAAAAGG+AGG + Chr8:89408937-89408956 MsG0880047666.01.T01:intron 30.0%
TAATCAAAATGCGAGAATTC+TGG + Chr8:89408609-89408628 MsG0880047666.01.T01:intron 30.0%
TACCTAAAGGGATGAAAAAA+TGG - Chr8:89407410-89407429 None:intergenic 30.0%
TATGATCAAGTTCCTCAATA+TGG + Chr8:89409750-89409769 MsG0880047666.01.T01:CDS 30.0%
TATTGAGGAACTTGATCATA+AGG - Chr8:89409750-89409769 None:intergenic 30.0%
TCAAACCAGTTCATATGAAA+GGG + Chr8:89407295-89407314 MsG0880047666.01.T01:intron 30.0%
TCGTTATATGTACTACCTAA+AGG - Chr8:89407423-89407442 None:intergenic 30.0%
TTATCTTGTGATTGTGACTT+AGG + Chr8:89409953-89409972 MsG0880047666.01.T01:intron 30.0%
TTCTTGTGTTTATGTAAGGA+AGG + Chr8:89409879-89409898 MsG0880047666.01.T01:CDS 30.0%
TTGTTGTACTTTGATTGTAC+AGG + Chr8:89406954-89406973 MsG0880047666.01.T01:intron 30.0%
! AAAAGGATATTGGATTGGAA+TGG - Chr8:89409226-89409245 None:intergenic 30.0%
! TAAAACTTTTTGTAAGAGGG+AGG + Chr8:89408258-89408277 MsG0880047666.01.T01:intron 30.0%
! TATCCTTTTTCCATTGATGA+TGG + Chr8:89409237-89409256 MsG0880047666.01.T01:CDS 30.0%
!! TCTAAACTAAATGGTCTTGT+TGG - Chr8:89409432-89409451 None:intergenic 30.0%
!!! GTTTTTGGGTTATAGTTAGA+TGG - Chr8:89409107-89409126 None:intergenic 30.0%
!!! TTCCATTTTTTCATCCCTTT+AGG + Chr8:89407405-89407424 MsG0880047666.01.T01:intron 30.0%
AAAAAACGTGTAAATTCCGG+CGG - Chr8:89408823-89408842 None:intergenic 35.0%
AACCACATGAAGTTCTACAA+AGG - Chr8:89409203-89409222 None:intergenic 35.0%
AATAAGCAAAAATTAGCCGC+CGG + Chr8:89408804-89408823 MsG0880047666.01.T01:intron 35.0%
ACAACAATGAACTAGTTGCT+AGG - Chr8:89408356-89408375 None:intergenic 35.0%
ACACTAGAAAACAAACACAC+AGG - Chr8:89407727-89407746 None:intergenic 35.0%
ACATGAAGTTCTACAAAGGA+TGG - Chr8:89409199-89409218 None:intergenic 35.0%
ACTTGGATGATTACCTTTAG+TGG + Chr8:89410030-89410049 MsG0880047666.01.T01:intron 35.0%
AGATGTTGTGTAAATTGACC+CGG + Chr8:89407930-89407949 MsG0880047666.01.T01:intron 35.0%
AGTATCCCTTTCATATGAAC+TGG - Chr8:89407303-89407322 None:intergenic 35.0%
ATAGACTCTTTAACTAGCAG+AGG + Chr8:89408215-89408234 MsG0880047666.01.T01:intron 35.0%
ATCAAAATGCGAGAATTCTG+GGG + Chr8:89408611-89408630 MsG0880047666.01.T01:intron 35.0%
ATCCTTTGTAGAACTTCATG+TGG + Chr8:89409198-89409217 MsG0880047666.01.T01:intron 35.0%
ATGAAATCCTGGTCATGTAA+AGG - Chr8:89408104-89408123 None:intergenic 35.0%
CAACCATCATCAATGGAAAA+AGG - Chr8:89409243-89409262 None:intergenic 35.0%
CACTCGTACTAACATAGTAT+TGG + Chr8:89410130-89410149 MsG0880047666.01.T01:intron 35.0%
CTAAAGCTACTGAATCTTTG+AGG + Chr8:89409661-89409680 MsG0880047666.01.T01:CDS 35.0%
CTCAAAGATTCAGTAGCTTT+AGG - Chr8:89409663-89409682 None:intergenic 35.0%
CTTGGATGATTACCTTTAGT+GGG + Chr8:89410031-89410050 MsG0880047666.01.T01:intron 35.0%
GAAGTGCAATTTCTATCTGA+TGG - Chr8:89407799-89407818 None:intergenic 35.0%
GGAAATTGTTCACAAAACAC+AGG - Chr8:89409540-89409559 None:intergenic 35.0%
GTGAAGCTTTGCACAAATTA+TGG - Chr8:89408862-89408881 None:intergenic 35.0%
GTGCTTGTGTCTAAACTAAA+TGG - Chr8:89409441-89409460 None:intergenic 35.0%
TAGACTCTTTAACTAGCAGA+GGG + Chr8:89408216-89408235 MsG0880047666.01.T01:intron 35.0%
TATGTTAGTACGAGTGAAAC+TGG - Chr8:89410126-89410145 None:intergenic 35.0%
TCAACTCTAATCCCATATTG+AGG - Chr8:89409765-89409784 None:intergenic 35.0%
TGAAATCCTGGTCATGTAAA+GGG - Chr8:89408103-89408122 None:intergenic 35.0%
TGAATAGGATATCTTCCAGA+AGG - Chr8:89409330-89409349 None:intergenic 35.0%
TGATGAGCAAGTTTGTATTG+AGG + Chr8:89407822-89407841 MsG0880047666.01.T01:intron 35.0%
TGTTGAAGTATATGAAGCTC+TGG + Chr8:89407129-89407148 MsG0880047666.01.T01:intron 35.0%
TTAGAGATGAATGCATGAAC+AGG - Chr8:89409067-89409086 None:intergenic 35.0%
TTCAATCACCTGCAATTACA+TGG - Chr8:89410271-89410290 None:intergenic 35.0%
TTGGATGATTACCTTTAGTG+GGG + Chr8:89410032-89410051 MsG0880047666.01.T01:intron 35.0%
! ATGAGAACAGGCTTTTCTAA+TGG + Chr8:89410511-89410530 MsG0880047666.01.T01:CDS 35.0%
! CGGCTAATTTTTGCTTATTG+CGG - Chr8:89408803-89408822 None:intergenic 35.0%
! CTAATTTTTGCTTATTGCGG+CGG - Chr8:89408800-89408819 None:intergenic 35.0%
! GGATTGAGATTTTGTGAGAA+TGG - Chr8:89409178-89409197 None:intergenic 35.0%
! GTTTTGCTTTGTGTTGGATT+TGG + Chr8:89410366-89410385 MsG0880047666.01.T01:intron 35.0%
! TTCCTTTTTGCAATCTGAAG+CGG + Chr8:89407169-89407188 MsG0880047666.01.T01:intron 35.0%
! TTGTGTTGGATTTGGAATTC+TGG + Chr8:89410374-89410393 MsG0880047666.01.T01:intron 35.0%
! TTTTGCTGCTGTATCTGTTA+CGG + Chr8:89407641-89407660 MsG0880047666.01.T01:intron 35.0%
!! CGTACTAACATAGTATTGGT+AGG + Chr8:89410134-89410153 MsG0880047666.01.T01:intron 35.0%
!! TTTGTGGTTTTGCTTTGTGT+TGG + Chr8:89410360-89410379 MsG0880047666.01.T01:intron 35.0%
!!! CAAGTGTTGTTGCTTTTTTG+AGG - Chr8:89408964-89408983 None:intergenic 35.0%
!!! GATGGTTTTTGAGTCAAAAG+TGG - Chr8:89409035-89409054 None:intergenic 35.0%
!!! GTTACTGCTATTTCAGCTTT+TGG + Chr8:89410408-89410427 MsG0880047666.01.T01:CDS 35.0%
!!! TTTTCCATTGATGATGGTTG+TGG + Chr8:89409243-89409262 MsG0880047666.01.T01:CDS 35.0%
AACATGTTTCCCACGTAGTT+TGG - Chr8:89406774-89406793 None:intergenic 40.0%
AAGTTCCAAAACCCCACTAA+AGG - Chr8:89410046-89410065 None:intergenic 40.0%
ACAGTTCCACATGAATGGAT+CGG - Chr8:89409388-89409407 None:intergenic 40.0%
ACATGTTTCCCACGTAGTTT+GGG - Chr8:89406773-89406792 None:intergenic 40.0%
ACCGCCAGTAAAGTTTATAG+TGG + Chr8:89408765-89408784 MsG0880047666.01.T01:intron 40.0%
ACTTCCACAACCATCATCAA+TGG - Chr8:89409250-89409269 None:intergenic 40.0%
AGGAATGTCCATGTAATTGC+AGG + Chr8:89410260-89410279 MsG0880047666.01.T01:CDS 40.0%
ATCCGCTTCAGATTGCAAAA+AGG - Chr8:89407174-89407193 None:intergenic 40.0%
CAAGATGAATCACAGTGTTC+AGG - Chr8:89409561-89409580 None:intergenic 40.0%
CAATGTCAGGATCAATCCAA+AGG + Chr8:89409816-89409835 MsG0880047666.01.T01:CDS 40.0%
CCTAGTGGCAGCAAAAATAA+CGG + Chr8:89408732-89408751 MsG0880047666.01.T01:intron 40.0%
CTCATAGCAAAAGAACACTC+TGG - Chr8:89409615-89409634 None:intergenic 40.0%
CTTGAACTAAGAACACCTTC+TGG + Chr8:89409312-89409331 MsG0880047666.01.T01:CDS 40.0%
CTTTGAACTCCACATGTTAC+TGG - Chr8:89410489-89410508 None:intergenic 40.0%
GAAACAAGCATGTGATGTGA+TGG + Chr8:89406897-89406916 MsG0880047666.01.T01:intron 40.0%
GAAATATCAGTCCAGCAAAC+AGG - Chr8:89407754-89407773 None:intergenic 40.0%
GAACCTCAGATCTTGCTTAA+GGG + Chr8:89410092-89410111 MsG0880047666.01.T01:intron 40.0%
GAGTTCAAAGCAATGAGAAC+AGG + Chr8:89410499-89410518 MsG0880047666.01.T01:CDS 40.0%
GCCACTATAAACTTTACTGG+CGG - Chr8:89408769-89408788 None:intergenic 40.0%
GCCAGTAAAGTTTATAGTGG+CGG + Chr8:89408768-89408787 MsG0880047666.01.T01:intron 40.0%
GCTAAAGAACCAGTAACATG+TGG + Chr8:89410477-89410496 MsG0880047666.01.T01:CDS 40.0%
GCTGAAATGCAACGTTGATA+AGG + Chr8:89406675-89406694 MsG0880047666.01.T01:CDS 40.0%
TCAAAATGCGAGAATTCTGG+GGG + Chr8:89408612-89408631 MsG0880047666.01.T01:intron 40.0%
TCTTCACAGTTCCACATGAA+TGG - Chr8:89409393-89409412 None:intergenic 40.0%
TGAATGCATGAACAGGTACT+AGG - Chr8:89409060-89409079 None:intergenic 40.0%
TGCAATTTCTATCTGATGGC+AGG - Chr8:89407795-89407814 None:intergenic 40.0%
TGGGAAACATGTTCAGTTGA+CGG + Chr8:89406781-89406800 MsG0880047666.01.T01:intron 40.0%
TGTTCACAAAACACAGGCTT+TGG - Chr8:89409534-89409553 None:intergenic 40.0%
TTCATGTGGAACTGTGAAGA+CGG + Chr8:89409393-89409412 MsG0880047666.01.T01:CDS 40.0%
TTGGAATTGGAGGTGGTATT+TGG + Chr8:89410436-89410455 MsG0880047666.01.T01:CDS 40.0%
! AAGGCATTTCTTAGAGCTGA+TGG + Chr8:89406694-89406713 MsG0880047666.01.T01:CDS 40.0%
! ATGAACAGGTACTAGGTTGA+TGG - Chr8:89409053-89409072 None:intergenic 40.0%
! ATGATAATGCAAGGCACAGT+AGG + Chr8:89410240-89410259 MsG0880047666.01.T01:CDS 40.0%
! CTAGTGTTTTTCCTGTTTGC+TGG + Chr8:89407740-89407759 MsG0880047666.01.T01:intron 40.0%
! GATTACCTTTAGTGGGGTTT+TGG + Chr8:89410038-89410057 MsG0880047666.01.T01:intron 40.0%
! GTGCAAAGTATCTATCGACT+TGG + Chr8:89410013-89410032 MsG0880047666.01.T01:intron 40.0%
! TGGCAGATCATGATAATGCA+AGG + Chr8:89410231-89410250 MsG0880047666.01.T01:intron 40.0%
! TGTTGAAGGTGCGTTTGTAT+TGG + Chr8:89406747-89406766 MsG0880047666.01.T01:CDS 40.0%
!! AAAGTATTGATGAGGCGTGA+TGG + Chr8:89407615-89407634 MsG0880047666.01.T01:intron 40.0%
!! GAGTGTTCTTTTGCTATGAG+TGG + Chr8:89409615-89409634 MsG0880047666.01.T01:CDS 40.0%
!!! ATTTCAGCTTTTGGAGCACT+TGG + Chr8:89410417-89410436 MsG0880047666.01.T01:CDS 40.0%
AAAAACATGCAGGCCCTTAG+CGG - Chr8:89407681-89407700 None:intergenic 45.0%
AACTGCCAGTTTACACCTAG+TGG + Chr8:89408717-89408736 MsG0880047666.01.T01:intron 45.0%
ACAGGAACCAAGATACACGT+AGG - Chr8:89407709-89407728 None:intergenic 45.0%
AGTTGTCCCTTTACATGACC+AGG + Chr8:89408094-89408113 MsG0880047666.01.T01:intron 45.0%
CGAACCTCAGATCTTGCTTA+AGG + Chr8:89410091-89410110 MsG0880047666.01.T01:intron 45.0%
CTTGTTGAGCTGCGAGAAAT+AGG + Chr8:89407847-89407866 MsG0880047666.01.T01:intron 45.0%
GATATTTCCCTCCTGGTGTT+CGG + Chr8:89407766-89407785 MsG0880047666.01.T01:intron 45.0%
GATCCCTTAAGCAAGATCTG+AGG - Chr8:89410098-89410117 None:intergenic 45.0%
GCCGCCACTATAAACTTTAC+TGG - Chr8:89408772-89408791 None:intergenic 45.0%
GGAACTTGATCATAAGGCTG+AGG - Chr8:89409744-89409763 None:intergenic 45.0%
GGATCGGTGACTAAAATGTG+TGG - Chr8:89409372-89409391 None:intergenic 45.0%
GTAGGCACCAAAAAACATGC+AGG - Chr8:89407691-89407710 None:intergenic 45.0%
GTGTATTGCGGCAGTTGTAT+GGG + Chr8:89408682-89408701 MsG0880047666.01.T01:intron 45.0%
GTTCAGTTGACGGTTCTTGA+AGG + Chr8:89406791-89406810 MsG0880047666.01.T01:intron 45.0%
TAGTCACCGATCCATTCATG+TGG + Chr8:89409379-89409398 MsG0880047666.01.T01:CDS 45.0%
TCTCATATCCTCCCATATGC+AGG + Chr8:89407541-89407560 MsG0880047666.01.T01:intron 45.0%
TGAGGTTCGAACTTTGTCGA+TGG - Chr8:89410080-89410099 None:intergenic 45.0%
TGTAAGATCCTGCATATGGG+AGG - Chr8:89407552-89407571 None:intergenic 45.0%
TGTCAGGATCAATCCAAAGG+TGG + Chr8:89409819-89409838 MsG0880047666.01.T01:CDS 45.0%
TGTGGTGTTTGCGATGTTGA+AGG + Chr8:89406733-89406752 MsG0880047666.01.T01:CDS 45.0%
TGTGTATTGCGGCAGTTGTA+TGG + Chr8:89408681-89408700 MsG0880047666.01.T01:intron 45.0%
TTGATATTCCAGTGACGACG+CGG + Chr8:89409787-89409806 MsG0880047666.01.T01:CDS 45.0%
! ATGTGATGGTGCTTTGCTGA+AGG + Chr8:89406911-89406930 MsG0880047666.01.T01:intron 45.0%
! GATTTGGAATTCTGGCTGCA+GGG + Chr8:89410382-89410401 MsG0880047666.01.T01:intron 45.0%
! TGCAATCTGAAGCGGATTTC+AGG + Chr8:89407177-89407196 MsG0880047666.01.T01:intron 45.0%
! TGTATCTGTTACGGTTGGCT+GGG + Chr8:89407650-89407669 MsG0880047666.01.T01:intron 45.0%
! TGTATTGGCCCAAACTACGT+GGG + Chr8:89406762-89406781 MsG0880047666.01.T01:intron 45.0%
! TTGTATTGGCCCAAACTACG+TGG + Chr8:89406761-89406780 MsG0880047666.01.T01:intron 45.0%
! TTTGGAGCACTTGGAATTGG+AGG + Chr8:89410426-89410445 MsG0880047666.01.T01:CDS 45.0%
!! TTTGGTGCCTACGTGTATCT+TGG + Chr8:89407699-89407718 MsG0880047666.01.T01:intron 45.0%
!!! CCGTTATTTTTGCTGCCACT+AGG - Chr8:89408735-89408754 None:intergenic 45.0%
!!! CTAAGGGCCTGCATGTTTTT+TGG + Chr8:89407681-89407700 MsG0880047666.01.T01:intron 45.0%
!!! GCTTTTGGAGCACTTGGAAT+TGG + Chr8:89410423-89410442 MsG0880047666.01.T01:CDS 45.0%
!!! ATTTTATTTTTTAAAAAAAG+TGG + Chr8:89408543-89408562 MsG0880047666.01.T01:intron 5.0%
ACAAGTTCCACCACCACCTT+TGG - Chr8:89409835-89409854 None:intergenic 50.0%
AGAGGGACTGCTCCTTTATG+AGG + Chr8:89408233-89408252 MsG0880047666.01.T01:intron 50.0%
AGGGAGGAGCAAGTTTGAAG+AGG + Chr8:89408274-89408293 MsG0880047666.01.T01:intron 50.0%
CAGGATCAATCCAAAGGTGG+TGG + Chr8:89409822-89409841 MsG0880047666.01.T01:CDS 50.0%
CTGGACTGATATTTCCCTCC+TGG + Chr8:89407759-89407778 MsG0880047666.01.T01:intron 50.0%
CTGTATCTGTTACGGTTGGC+TGG + Chr8:89407649-89407668 MsG0880047666.01.T01:intron 50.0%
GCTGATGGTATTGCTGCAAC+TGG + Chr8:89406709-89406728 MsG0880047666.01.T01:CDS 50.0%
GCTGCTGTATCTGTTACGGT+TGG + Chr8:89407645-89407664 MsG0880047666.01.T01:intron 50.0%
GGGAGGAGCAAGTTTGAAGA+GGG + Chr8:89408275-89408294 MsG0880047666.01.T01:intron 50.0%
GGTATTGCTGCAACTGGATG+TGG + Chr8:89406715-89406734 MsG0880047666.01.T01:CDS 50.0%
TATTGCGGCAGTTGTATGGG+CGG + Chr8:89408685-89408704 MsG0880047666.01.T01:intron 50.0%
TGCTGCCACTAGGTGTAAAC+TGG - Chr8:89408725-89408744 None:intergenic 50.0%
! GATCAATCCAAAGGTGGTGG+TGG + Chr8:89409825-89409844 MsG0880047666.01.T01:CDS 50.0%
! GGATTTGGAATTCTGGCTGC+AGG + Chr8:89410381-89410400 MsG0880047666.01.T01:intron 50.0%
! GTATTGATGAGGCGTGATGG+TGG + Chr8:89407618-89407637 MsG0880047666.01.T01:intron 50.0%
!! AAAGGTGGTGGTGGAACTTG+TGG + Chr8:89409834-89409853 MsG0880047666.01.T01:CDS 50.0%
ATGGCAGGAAACCGAACACC+AGG - Chr8:89407780-89407799 None:intergenic 55.0%
CAGGAAACCGAACACCAGGA+GGG - Chr8:89407776-89407795 None:intergenic 55.0%
GACGCGGTGTCTTCAATGTC+AGG + Chr8:89409803-89409822 MsG0880047666.01.T01:CDS 55.0%
TGGCTGGGAGTTTCCGCTAA+GGG + Chr8:89407665-89407684 MsG0880047666.01.T01:intron 55.0%
TTGGCTGGGAGTTTCCGCTA+AGG + Chr8:89407664-89407683 MsG0880047666.01.T01:intron 55.0%
! GGAGCACTTGGAATTGGAGG+TGG + Chr8:89410429-89410448 MsG0880047666.01.T01:CDS 55.0%
GCAGGAAACCGAACACCAGG+AGG - Chr8:89407777-89407796 None:intergenic 60.0%
TGAAGACACCGCGTCGTCAC+TGG - Chr8:89409798-89409817 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 89406673 89410530 89406673 ID=MsG0880047666.01;Name=MsG0880047666.01
Chr8 mRNA 89406673 89410530 89406673 ID=MsG0880047666.01.T01;Parent=MsG0880047666.01;Name=MsG0880047666.01.T01;_AED=0.39;_eAED=0.46;_QI=0|0|0|1|1|0.75|4|0|331
Chr8 exon 89406673 89406779 89406673 ID=MsG0880047666.01.T01:exon:18121;Parent=MsG0880047666.01.T01
Chr8 exon 89409209 89409924 89409209 ID=MsG0880047666.01.T01:exon:18122;Parent=MsG0880047666.01.T01
Chr8 exon 89410237 89410281 89410237 ID=MsG0880047666.01.T01:exon:18123;Parent=MsG0880047666.01.T01
Chr8 exon 89410403 89410530 89410403 ID=MsG0880047666.01.T01:exon:18124;Parent=MsG0880047666.01.T01
Chr8 CDS 89406673 89406779 89406673 ID=MsG0880047666.01.T01:cds;Parent=MsG0880047666.01.T01
Chr8 CDS 89409209 89409924 89409209 ID=MsG0880047666.01.T01:cds;Parent=MsG0880047666.01.T01
Chr8 CDS 89410237 89410281 89410237 ID=MsG0880047666.01.T01:cds;Parent=MsG0880047666.01.T01
Chr8 CDS 89410403 89410530 89410403 ID=MsG0880047666.01.T01:cds;Parent=MsG0880047666.01.T01
Gene Sequence

>MsG0880047666.01.T01

TGGCTGAAATGCAACGTTGATAAGGCATTTCTTAGAGCTGATGGTATTGCTGCAACTGGATGTGGTGTTTGCGATGTTGAAGGTGCGTTTGTATTGGCCCAAACTACAACTTCATGTGGTTCCATTCCAATCCAATATCCTTTTTCCATTGATGATGGTTGTGGAAGTCCATATTACAGATTCATTCTTTCTTGTTCTGATACACAAAAGCTTGAACTAAGAACACCTTCTGGAAGATATCCTATTCATAATGTTAGCTATATTGATCCACACATTTTAGTCACCGATCCATTCATGTGGAACTGTGAAGACGGTGTCAATTATCGACCAACAAGACCATTTAGTTTAGACACAAGCACACGTTTCAAGCTTTCATCTCAAAATCAGTATCTTTTTTTCAATTGTAGTGAAGAAAAAGTTATTGTTAAACCAAAGCCTGTGTTTTGTGAACAATTTCCTGAACACTGTGATTCATCTTGTGATAGTGCTAGTTATCTTTGTAGACATTTGCCAGAGTGTTCTTTTGCTATGAGTGGTAGTTCTTGTTGTTCTTATAAACCTAAAGCTACTGAATCTTTGAGGTTGATGCTTGAGTATTGTACAAGTTATGCTAGTGTTTATTGGAGAAATGTTGGAGCACCTCAGCCTTATGATCAAGTTCCTCAATATGGGATTAGAGTTGATTTTGATATTCCAGTGACGACGCGGTGTCTTCAATGTCAGGATCAATCCAAAGGTGGTGGTGGAACTTGTGGATTTGATACACAGACTCAGAGTTTCTTGTGTTTATGTAAGGAAGGAAATTTCACTACTCATTGTAATGATCATGATAATGCAAGGCACAGTAGGAATGTCCATGTAATTGCAGGGACAGTTACTGCTATTTCAGCTTTTGGAGCACTTGGAATTGGAGGTGGTATTTGGTACTTAAAGAAAATGAAAGCTAAAGAACCAGTAACATGTGGAGTTCAAAGCAATGAGAACAGGCTTTTCTAA

Protein sequence

>MsG0880047666.01.T01

WLKCNVDKAFLRADGIAATGCGVCDVEGAFVLAQTTTSCGSIPIQYPFSIDDGCGSPYYRFILSCSDTQKLELRTPSGRYPIHNVSYIDPHILVTDPFMWNCEDGVNYRPTRPFSLDTSTRFKLSSQNQYLFFNCSEEKVIVKPKPVFCEQFPEHCDSSCDSASYLCRHLPECSFAMSGSSCCSYKPKATESLRLMLEYCTSYASVYWRNVGAPQPYDQVPQYGIRVDFDIPVTTRCLQCQDQSKGGGGTCGFDTQTQSFLCLCKEGNFTTHCNDHDNARHSRNVHVIAGTVTAISAFGALGIGGGIWYLKKMKAKEPVTCGVQSNENRLF*