Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006210.01.T01 | KEH44536.1 | 80.184 | 217 | 35 | 2 | 3 | 219 | 74 | 282 | 1.96E-114 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006210.01.T01 | O64886 | 55.665 | 203 | 76 | 2 | 14 | 216 | 240 | 428 | 9.03E-65 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006210.01.T01 | A0A072VS76 | 80.184 | 217 | 35 | 2 | 3 | 219 | 74 | 282 | 9.37e-115 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047797.01 | MsG0180006210.01 | -0.808864 | 2.511291e-50 | 1.452007e-47 |
| MsG0080048178.01 | MsG0180006210.01 | -0.812065 | 5.113622e-51 | 3.218567e-48 |
| MsG0080048532.01 | MsG0180006210.01 | 0.801350 | 9.387124e-49 | 4.473010e-46 |
| MsG0080048809.01 | MsG0180006210.01 | 0.806716 | 7.185728e-50 | 3.928030e-47 |
| MsG0080048901.01 | MsG0180006210.01 | 0.828944 | 6.781796e-55 | 6.840422e-52 |
| MsG0180000240.01 | MsG0180006210.01 | 0.815287 | 9.988795e-52 | 6.858349e-49 |
| MsG0180000402.01 | MsG0180006210.01 | -0.817747 | 2.809636e-52 | 2.063571e-49 |
| MsG0180000555.01 | MsG0180006210.01 | -0.805389 | 1.367017e-49 | 7.222919e-47 |
| MsG0180000741.01 | MsG0180006210.01 | -0.806479 | 8.062097e-50 | 4.380494e-47 |
| MsG0180000821.01 | MsG0180006210.01 | -0.807078 | 6.023937e-50 | 3.323881e-47 |
| MsG0180002894.01 | MsG0180006210.01 | -0.813882 | 2.043308e-51 | 1.350544e-48 |
| MsG0180004600.01 | MsG0180006210.01 | -0.803741 | 3.015962e-49 | 1.527456e-46 |
| MsG0180006064.01 | MsG0180006210.01 | 0.800620 | 1.322964e-48 | 6.188610e-46 |
| MsG0180006210.01 | MsG0280006346.01 | 0.802569 | 5.272427e-49 | 2.591231e-46 |
| MsG0180006210.01 | MsG0280007547.01 | -0.805480 | 1.308113e-49 | 6.928092e-47 |
| MsG0180006210.01 | MsG0280007818.01 | -0.814585 | 1.429270e-51 | 9.628471e-49 |
| MsG0180006210.01 | MsG0280007826.01 | -0.831973 | 1.231746e-55 | 1.358092e-52 |
| MsG0180006210.01 | MsG0280007864.01 | 0.837795 | 4.210803e-57 | 5.530563e-54 |
| MsG0180006210.01 | MsG0280009754.01 | -0.831321 | 1.783351e-55 | 1.928524e-52 |
| MsG0180006210.01 | MsG0280010443.01 | -0.808799 | 2.592637e-50 | 1.496421e-47 |
| MsG0180006210.01 | MsG0280011131.01 | -0.801419 | 9.085422e-49 | 4.336734e-46 |
| MsG0180006210.01 | MsG0280011163.01 | -0.800600 | 1.335778e-48 | 6.245339e-46 |
| MsG0180006210.01 | MsG0380012085.01 | -0.816308 | 5.912436e-52 | 4.174862e-49 |
| MsG0180006210.01 | MsG0380012091.01 | -0.811848 | 5.700287e-51 | 3.566936e-48 |
| MsG0180006210.01 | MsG0380012365.01 | -0.837863 | 4.044358e-57 | 5.322965e-54 |
| MsG0180006210.01 | MsG0380013068.01 | -0.800327 | 1.518240e-48 | 7.049667e-46 |
| MsG0180006210.01 | MsG0380014162.01 | 0.817268 | 3.601497e-52 | 2.610476e-49 |
| MsG0180006210.01 | MsG0380015374.01 | -0.822529 | 2.256810e-53 | 1.893919e-50 |
| MsG0180006210.01 | MsG0380017220.01 | -0.835949 | 1.245351e-56 | 1.546344e-53 |
| MsG0180006210.01 | MsG0380017266.01 | 0.859055 | 5.386905e-63 | 1.403898e-59 |
| MsG0180006210.01 | MsG0380017551.01 | 0.844717 | 6.361343e-59 | 1.036042e-55 |
| MsG0180006210.01 | MsG0480018347.01 | -0.820582 | 6.354749e-53 | 5.048011e-50 |
| MsG0180006210.01 | MsG0480018635.01 | -0.801627 | 8.235907e-49 | 3.951827e-46 |
| MsG0180006210.01 | MsG0480020327.01 | 0.800202 | 1.609590e-48 | 7.449790e-46 |
| MsG0180006210.01 | MsG0480020559.01 | -0.811315 | 7.444015e-51 | 4.592746e-48 |
| MsG0180006210.01 | MsG0480020634.01 | -0.808256 | 3.386692e-50 | 1.927286e-47 |
| MsG0180006210.01 | MsG0480020964.01 | -0.819752 | 9.849553e-53 | 7.646250e-50 |
| MsG0180006210.01 | MsG0480021900.01 | -0.804251 | 2.362411e-49 | 1.212167e-46 |
| MsG0180006210.01 | MsG0480021948.01 | -0.807772 | 4.293941e-50 | 2.412470e-47 |
| MsG0180006210.01 | MsG0480022105.01 | -0.830519 | 2.805148e-55 | 2.962393e-52 |
| MsG0180006210.01 | MsG0480022482.01 | -0.804142 | 2.489238e-49 | 1.273761e-46 |
| MsG0180006210.01 | MsG0480022533.01 | -0.807626 | 4.610466e-50 | 2.580523e-47 |
| MsG0180006210.01 | MsG0480022597.01 | -0.818040 | 2.411985e-52 | 1.785660e-49 |
| MsG0180006210.01 | MsG0480022598.01 | -0.807736 | 4.368678e-50 | 2.452279e-47 |
| MsG0180006210.01 | MsG0480022615.01 | 0.821039 | 4.990923e-53 | 4.015969e-50 |
| MsG0180006210.01 | MsG0480023099.01 | -0.802419 | 5.659870e-49 | 2.771317e-46 |
| MsG0180006210.01 | MsG0580024157.01 | -0.816453 | 5.487279e-52 | 3.889544e-49 |
| MsG0180006210.01 | MsG0580024304.01 | -0.817406 | 3.353127e-52 | 2.439814e-49 |
| MsG0180006210.01 | MsG0580024363.01 | 0.872946 | 2.150909e-67 | 9.167580e-64 |
| MsG0180006210.01 | MsG0580024433.01 | -0.800662 | 1.297393e-48 | 6.075502e-46 |
| MsG0180006210.01 | MsG0580024477.01 | -0.806738 | 7.110403e-50 | 3.889131e-47 |
| MsG0180006210.01 | MsG0580024853.01 | -0.854450 | 1.221404e-61 | 2.728657e-58 |
| MsG0180006210.01 | MsG0580027401.01 | -0.800649 | 1.305384e-48 | 6.110913e-46 |
| MsG0180006210.01 | MsG0580029198.01 | -0.810191 | 1.303112e-50 | 7.803670e-48 |
| MsG0180006210.01 | MsG0580029999.01 | 0.812823 | 3.491698e-51 | 2.242537e-48 |
| MsG0180006210.01 | MsG0680030553.01 | -0.801466 | 8.884905e-49 | 4.246073e-46 |
| MsG0180006210.01 | MsG0680034036.01 | -0.806140 | 9.507136e-50 | 5.121202e-47 |
| MsG0180006210.01 | MsG0680034753.01 | -0.805223 | 1.480527e-49 | 7.789485e-47 |
| MsG0180006210.01 | MsG0680035716.01 | -0.812923 | 3.320715e-51 | 2.138419e-48 |
| MsG0180006210.01 | MsG0780036548.01 | -0.804066 | 2.581569e-49 | 1.318476e-46 |
| MsG0180006210.01 | MsG0780037512.01 | -0.821689 | 3.533591e-53 | 2.895121e-50 |
| MsG0180006210.01 | MsG0780037975.01 | -0.800588 | 1.343461e-48 | 6.279328e-46 |
| MsG0180006210.01 | MsG0780038386.01 | -0.802149 | 6.432645e-49 | 3.127936e-46 |
| MsG0180006210.01 | MsG0780038644.01 | -0.800290 | 1.544455e-48 | 7.164669e-46 |
| MsG0180006210.01 | MsG0780040788.01 | -0.800816 | 1.207089e-48 | 5.674453e-46 |
| MsG0180006210.01 | MsG0880042161.01 | -0.821046 | 4.970964e-53 | 4.000779e-50 |
| MsG0180006210.01 | MsG0880042698.01 | -0.803898 | 2.797554e-49 | 1.422639e-46 |
| MsG0180006210.01 | MsG0880043292.01 | -0.807427 | 5.082406e-50 | 2.830036e-47 |
| MsG0180006210.01 | MsG0880044574.01 | -0.818179 | 2.243073e-52 | 1.667094e-49 |
| MsG0180006210.01 | MsG0880045936.01 | -0.830124 | 3.503152e-55 | 3.657480e-52 |
| MsG0180006210.01 | MsG0880046264.01 | -0.803180 | 3.942167e-49 | 1.967949e-46 |
| MsG0180006210.01 | MsG0880047285.01 | 0.800735 | 1.253628e-48 | 5.881340e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006210.01.T01 | MTR_1g116110 | 80.184 | 217 | 35 | 2 | 3 | 219 | 74 | 282 | 2.38e-118 | 338 |
| MsG0180006210.01.T01 | MTR_1g116110 | 83.010 | 206 | 32 | 1 | 14 | 219 | 110 | 312 | 2.85e-118 | 339 |
| MsG0180006210.01.T01 | MTR_1g116110 | 83.010 | 206 | 32 | 1 | 14 | 219 | 200 | 402 | 8.08e-117 | 338 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006210.01.T01 | AT2G44520 | 55.665 | 203 | 76 | 2 | 14 | 216 | 240 | 428 | 9.21e-66 | 209 |
Find 46 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGGCTGCTTTGTATTTC+TGG | 0.083161 | 1:-101477925 | MsG0180006210.01.T01:CDS |
| TCTCAAAGCAAAATCCTTAT+TGG | 0.138649 | 1:+101476352 | None:intergenic |
| CTTGCCTGCCTTTGATCTTT+TGG | 0.182188 | 1:+101476565 | None:intergenic |
| TTCAGATGGGCTGCAGCTTC+TGG | 0.254382 | 1:-101477974 | MsG0180006210.01.T01:CDS |
| TATACAATCACCATTTGAAT+TGG | 0.325734 | 1:-101476964 | MsG0180006210.01.T01:CDS |
| ATGGCCTTTAAAAGCCAATA+AGG | 0.333255 | 1:-101476366 | MsG0180006210.01.T01:three_prime_UTR |
| TATACTCAAAACTCTGAAAC+AGG | 0.335386 | 1:-101476989 | MsG0180006210.01.T01:CDS |
| ACTAAATAGTTTGATTCTTC+CGG | 0.355070 | 1:-101477942 | MsG0180006210.01.T01:CDS |
| CATTGTGTAATATTTATCAT+TGG | 0.433851 | 1:-101476469 | MsG0180006210.01.T01:exon |
| CGTTGACTTCTAAGAAGTGT+TGG | 0.489983 | 1:+101476652 | None:intergenic |
| CAAAAGATCAAAGGCAGGCA+AGG | 0.508343 | 1:-101476564 | MsG0180006210.01.T01:CDS |
| TCTGAAGTTTCCACAGAGGA+TGG | 0.508508 | 1:+101476609 | None:intergenic |
| TGAAGTTTCCACAGAGGATG+GGG | 0.513270 | 1:+101476611 | None:intergenic |
| TTAACGAAATCCAATTCAAA+TGG | 0.516877 | 1:+101476954 | None:intergenic |
| CTGAAGTTTCCACAGAGGAT+GGG | 0.528347 | 1:+101476610 | None:intergenic |
| TCCGAGCTCTTTCCTTAGTG+CGG | 0.538953 | 1:+101476748 | None:intergenic |
| TGCCAGAAATACAAAGCAGC+CGG | 0.540109 | 1:+101477923 | None:intergenic |
| TATTACACAATGTCGTATGA+AGG | 0.554978 | 1:+101476480 | None:intergenic |
| GCAATGGAAGCATATGCTAC+AGG | 0.556784 | 1:+101476525 | None:intergenic |
| TCAGAGATGTATGACAAGAA+TGG | 0.558162 | 1:-101476591 | MsG0180006210.01.T01:CDS |
| AACGGGGAGATAAAGAAGAC+TGG | 0.572845 | 1:+101476713 | None:intergenic |
| TTCTTAGAAGTCAACGCAGA+GGG | 0.574626 | 1:-101476645 | MsG0180006210.01.T01:CDS |
| AATGGTAACCAAAAGATCAA+AGG | 0.578992 | 1:-101476573 | MsG0180006210.01.T01:CDS |
| CGTGAGGACTATGCTGCGGG+AGG | 0.580386 | 1:-101477866 | MsG0180006210.01.T01:CDS |
| AAAAGATCAAAGGCAGGCAA+GGG | 0.583612 | 1:-101476563 | MsG0180006210.01.T01:CDS |
| ACCGCACTAAGGAAAGAGCT+CGG | 0.586450 | 1:-101476749 | MsG0180006210.01.T01:CDS |
| TATTGCAAGTGTAAGTGCAG+TGG | 0.601469 | 1:+101476800 | None:intergenic |
| TGTCGTGAGGACTATGCTGC+GGG | 0.601768 | 1:-101477869 | MsG0180006210.01.T01:CDS |
| GTGAGGACTATGCTGCGGGA+GGG | 0.614597 | 1:-101477865 | MsG0180006210.01.T01:CDS |
| ACAATGTCGTATGAAGGAGC+AGG | 0.622299 | 1:+101476486 | None:intergenic |
| TAAGCAAGGGCCATAAAATG+TGG | 0.623266 | 1:+101477896 | None:intergenic |
| GTAACCAAAAGATCAAAGGC+AGG | 0.624561 | 1:-101476569 | MsG0180006210.01.T01:CDS |
| TTGAATTGGATTTCGTTAAG+CGG | 0.626280 | 1:-101476950 | MsG0180006210.01.T01:intron |
| TTTGAAATCCCCATCCTCTG+TGG | 0.629315 | 1:-101476619 | MsG0180006210.01.T01:CDS |
| GCTTCTAATTCACCGCCGCA+CGG | 0.637444 | 1:-101476679 | MsG0180006210.01.T01:CDS |
| CCTCACGACACATATAAGCA+AGG | 0.639408 | 1:+101477882 | None:intergenic |
| ATGGAAGCATATGCTACAGG+TGG | 0.647561 | 1:+101476528 | None:intergenic |
| CTCACGACACATATAAGCAA+GGG | 0.650006 | 1:+101477883 | None:intergenic |
| ATACTCAAAACTCTGAAACA+GGG | 0.654782 | 1:-101476988 | MsG0180006210.01.T01:CDS |
| CCTTGCTTATATGTGTCGTG+AGG | 0.692006 | 1:-101477882 | MsG0180006210.01.T01:CDS |
| TCTATAAAACGAAAACGCTG+CGG | 0.692808 | 1:+101476773 | None:intergenic |
| AGTGTTGGTTATCCGTGCGG+CGG | 0.696361 | 1:+101476667 | None:intergenic |
| GTGTCGTGAGGACTATGCTG+CGG | 0.715426 | 1:-101477870 | MsG0180006210.01.T01:CDS |
| AGAAGTGTTGGTTATCCGTG+CGG | 0.717760 | 1:+101476664 | None:intergenic |
| CTTCTTAGAAGTCAACGCAG+AGG | 0.741087 | 1:-101476646 | MsG0180006210.01.T01:CDS |
| CATCTCTGAAGTTTCCACAG+AGG | 0.745544 | 1:+101476605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTATTTTGAAATTATA+TGG | - | Chr1:101476500-101476519 | MsG0180006210.01.T01:CDS | 10.0% |
| !! | TAAATGAATGAAAAATATTG+AGG | + | Chr1:101476746-101476765 | None:intergenic | 15.0% |
| !!! | ATTGTAATTGTTTTTTCAAA+TGG | - | Chr1:101477910-101477929 | MsG0180006210.01.T01:CDS | 15.0% |
| !!! | GCATTTTTTTTTTTTTTTGA+GGG | + | Chr1:101476678-101476697 | None:intergenic | 15.0% |
| !!! | TGCATTTTTTTTTTTTTTTG+AGG | + | Chr1:101476679-101476698 | None:intergenic | 15.0% |
| !!! | TTTTCTTATAATGTTTTGTT+TGG | - | Chr1:101477871-101477890 | MsG0180006210.01.T01:CDS | 15.0% |
| !! | CATTGTGTAATATTTATCAT+TGG | - | Chr1:101477826-101477845 | MsG0180006210.01.T01:intron | 20.0% |
| !! | CCAAAAAAAATTTATTTGTG+CGG | + | Chr1:101476613-101476632 | None:intergenic | 20.0% |
| !!! | ATTTTGTACAAATATGCTAA+TGG | - | Chr1:101478003-101478022 | MsG0180006210.01.T01:CDS | 20.0% |
| !!! | ATTTTTCATTCATTTAGTGA+TGG | - | Chr1:101476750-101476769 | MsG0180006210.01.T01:CDS | 20.0% |
| !!! | CGCACAAATAAATTTTTTTT+GGG | - | Chr1:101476611-101476630 | MsG0180006210.01.T01:CDS | 20.0% |
| ! | AAAAAAAATGCATGTTACAC+TGG | - | Chr1:101476687-101476706 | MsG0180006210.01.T01:CDS | 25.0% |
| ! | AAAAGGCTTGAAATTCAAAA+AGG | + | Chr1:101477178-101477197 | None:intergenic | 25.0% |
| ! | ACTAAATAGTTTGATTCTTC+CGG | - | Chr1:101476353-101476372 | MsG0180006210.01.T01:three_prime_UTR | 25.0% |
| ! | ATGAAATTTATGTTGCTGTA+TGG | - | Chr1:101477088-101477107 | MsG0180006210.01.T01:intron | 25.0% |
| ! | CATAGGCTATAATCTTAAAT+AGG | + | Chr1:101477071-101477090 | None:intergenic | 25.0% |
| ! | GTTTATATAGTGATGAAGTT+TGG | - | Chr1:101476470-101476489 | MsG0180006210.01.T01:exon | 25.0% |
| ! | TACAGCAACATAAATTTCAT+AGG | + | Chr1:101477088-101477107 | None:intergenic | 25.0% |
| ! | TATACAATCACCATTTGAAT+TGG | - | Chr1:101477331-101477350 | MsG0180006210.01.T01:intron | 25.0% |
| ! | TCTATATATCTAATCCCTTT+GGG | - | Chr1:101476890-101476909 | MsG0180006210.01.T01:intron | 25.0% |
| ! | TGAAAATAACCCACAAAAAA+AGG | + | Chr1:101476305-101476324 | None:intergenic | 25.0% |
| ! | TTAACGAAATCCAATTCAAA+TGG | + | Chr1:101477344-101477363 | None:intergenic | 25.0% |
| !!! | AAATCCTTATTGGCTTTTAA+AGG | + | Chr1:101477936-101477955 | None:intergenic | 25.0% |
| !!! | CCGCACAAATAAATTTTTTT+TGG | - | Chr1:101476610-101476629 | MsG0180006210.01.T01:CDS | 25.0% |
| AATGGTAACCAAAAGATCAA+AGG | - | Chr1:101477722-101477741 | MsG0180006210.01.T01:intron | 30.0% | |
| ATTCAGTTAAACTAAACCGT+AGG | + | Chr1:101476576-101476595 | None:intergenic | 30.0% | |
| CTCTATATATCTAATCCCTT+TGG | - | Chr1:101476889-101476908 | MsG0180006210.01.T01:intron | 30.0% | |
| CTTGTCTATATCTAATCTCA+CGG | + | Chr1:101477217-101477236 | None:intergenic | 30.0% | |
| TATTACACAATGTCGTATGA+AGG | + | Chr1:101477818-101477837 | None:intergenic | 30.0% | |
| TCTCAAAGCAAAATCCTTAT+TGG | + | Chr1:101477946-101477965 | None:intergenic | 30.0% | |
| TTGAATTGGATTTCGTTAAG+CGG | - | Chr1:101477345-101477364 | MsG0180006210.01.T01:intron | 30.0% | |
| TTTCCAGATATAGAAACCTA+CGG | - | Chr1:101476557-101476576 | MsG0180006210.01.T01:CDS | 30.0% | |
| !! | ATACTCAAAACTCTGAAACA+GGG | - | Chr1:101477307-101477326 | MsG0180006210.01.T01:intron | 30.0% |
| !! | TATACTCAAAACTCTGAAAC+AGG | - | Chr1:101477306-101477325 | MsG0180006210.01.T01:intron | 30.0% |
| !! | TTTGTGGGTTATTTTCAGAT+GGG | - | Chr1:101476308-101476327 | MsG0180006210.01.T01:three_prime_UTR | 30.0% |
| !! | TTTTGTGGGTTATTTTCAGA+TGG | - | Chr1:101476307-101476326 | MsG0180006210.01.T01:three_prime_UTR | 30.0% |
| !!! | ATGTTTTGACCACAATGTTT+TGG | - | Chr1:101477411-101477430 | MsG0180006210.01.T01:intron | 30.0% |
| AAACCGTAGGTTTCTATATC+TGG | + | Chr1:101476563-101476582 | None:intergenic | 35.0% | |
| AAATCCAGTTTGAACCACAA+GGG | - | Chr1:101476527-101476546 | MsG0180006210.01.T01:CDS | 35.0% | |
| AATACACCAGACATGTGAAT+AGG | + | Chr1:101476797-101476816 | None:intergenic | 35.0% | |
| ATAACCCACAAAAAAAGGTG+AGG | + | Chr1:101476300-101476319 | None:intergenic | 35.0% | |
| ATGTTTCTTCCCATGTAAAC+AGG | - | Chr1:101477440-101477459 | MsG0180006210.01.T01:intron | 35.0% | |
| CATTTACCTATTCACATGTC+TGG | - | Chr1:101476788-101476807 | MsG0180006210.01.T01:CDS | 35.0% | |
| GTCTGGTGTATTGCAAATTT+AGG | - | Chr1:101476805-101476824 | MsG0180006210.01.T01:CDS | 35.0% | |
| TAACCCACAAAAAAAGGTGA+GGG | + | Chr1:101476299-101476318 | None:intergenic | 35.0% | |
| TCAGAGATGTATGACAAGAA+TGG | - | Chr1:101477704-101477723 | MsG0180006210.01.T01:intron | 35.0% | |
| TCTATAAAACGAAAACGCTG+CGG | + | Chr1:101477525-101477544 | None:intergenic | 35.0% | |
| TGTTTCTTCCCATGTAAACA+GGG | - | Chr1:101477441-101477460 | MsG0180006210.01.T01:intron | 35.0% | |
| TTGTGGTTCAAACTGGATTT+GGG | + | Chr1:101476527-101476546 | None:intergenic | 35.0% | |
| ! | ATGGCCTTTAAAAGCCAATA+AGG | - | Chr1:101477929-101477948 | MsG0180006210.01.T01:CDS | 35.0% |
| ! | ATTTCAAGCCTTTTTGCTCA+TGG | - | Chr1:101477184-101477203 | MsG0180006210.01.T01:intron | 35.0% |
| ! | TTTCAAGCCTTTTTGCTCAT+GGG | - | Chr1:101477185-101477204 | MsG0180006210.01.T01:intron | 35.0% |
| !! | TCTTTATCTCCCCGTTTTTA+TGG | - | Chr1:101477589-101477608 | MsG0180006210.01.T01:intron | 35.0% |
| AAAAGATCAAAGGCAGGCAA+GGG | - | Chr1:101477732-101477751 | MsG0180006210.01.T01:intron | 40.0% | |
| CAAATCCAGTTTGAACCACA+AGG | - | Chr1:101476526-101476545 | MsG0180006210.01.T01:CDS | 40.0% | |
| CATATGCCAAGAAACCCAAA+GGG | + | Chr1:101476907-101476926 | None:intergenic | 40.0% | |
| CATGAGTCTCCAAAACATTG+TGG | + | Chr1:101477423-101477442 | None:intergenic | 40.0% | |
| CTCACGACACATATAAGCAA+GGG | + | Chr1:101476415-101476434 | None:intergenic | 40.0% | |
| CTTGTGGTTCAAACTGGATT+TGG | + | Chr1:101476528-101476547 | None:intergenic | 40.0% | |
| GTAACCAAAAGATCAAAGGC+AGG | - | Chr1:101477726-101477745 | MsG0180006210.01.T01:intron | 40.0% | |
| GTTTCTTCCCATGTAAACAG+GGG | - | Chr1:101477442-101477461 | MsG0180006210.01.T01:intron | 40.0% | |
| TAAGCAAGGGCCATAAAATG+TGG | + | Chr1:101476402-101476421 | None:intergenic | 40.0% | |
| TAGAAGCCCAGCCATAAAAA+CGG | + | Chr1:101477603-101477622 | None:intergenic | 40.0% | |
| TATATCTAATCTCACGGCCA+TGG | + | Chr1:101477211-101477230 | None:intergenic | 40.0% | |
| TATGAAGGAGCAGGCAAAAA+CGG | + | Chr1:101477803-101477822 | None:intergenic | 40.0% | |
| TATTGCAAGTGTAAGTGCAG+TGG | + | Chr1:101477498-101477517 | None:intergenic | 40.0% | |
| TCATATGCCAAGAAACCCAA+AGG | + | Chr1:101476908-101476927 | None:intergenic | 40.0% | |
| TTCTTAGAAGTCAACGCAGA+GGG | - | Chr1:101477650-101477669 | MsG0180006210.01.T01:intron | 40.0% | |
| TTTCTTCCCATGTAAACAGG+GGG | - | Chr1:101477443-101477462 | MsG0180006210.01.T01:intron | 40.0% | |
| ! | CTGGCAGATACCACATTTTA+TGG | - | Chr1:101476389-101476408 | MsG0180006210.01.T01:three_prime_UTR | 40.0% |
| ! | GTTTTATAGAGACCGCACTA+AGG | - | Chr1:101477535-101477554 | MsG0180006210.01.T01:intron | 40.0% |
| ! | TCTAATCCCTTTGGGTTTCT+TGG | - | Chr1:101476898-101476917 | MsG0180006210.01.T01:intron | 40.0% |
| !! | CGTTGACTTCTAAGAAGTGT+TGG | + | Chr1:101477646-101477665 | None:intergenic | 40.0% |
| !!! | TGTCCCTCACCTTTTTTTGT+GGG | - | Chr1:101476293-101476312 | MsG0180006210.01.T01:three_prime_UTR | 40.0% |
| AACGGGGAGATAAAGAAGAC+TGG | + | Chr1:101477585-101477604 | None:intergenic | 45.0% | |
| ACAATGTCGTATGAAGGAGC+AGG | + | Chr1:101477812-101477831 | None:intergenic | 45.0% | |
| ACTCTCTTGCTGATCCATCT+GGG | - | Chr1:101476838-101476857 | MsG0180006210.01.T01:intron | 45.0% | |
| AGAAGCCCAGCCATAAAAAC+GGG | + | Chr1:101477602-101477621 | None:intergenic | 45.0% | |
| ATGAAGGAGCAGGCAAAAAC+GGG | + | Chr1:101477802-101477821 | None:intergenic | 45.0% | |
| CAAAAGATCAAAGGCAGGCA+AGG | - | Chr1:101477731-101477750 | MsG0180006210.01.T01:intron | 45.0% | |
| CCTCACGACACATATAAGCA+AGG | + | Chr1:101476416-101476435 | None:intergenic | 45.0% | |
| CCTTGCTTATATGTGTCGTG+AGG | - | Chr1:101476413-101476432 | MsG0180006210.01.T01:three_prime_UTR | 45.0% | |
| CTGAAGTTTCCACAGAGGAT+GGG | + | Chr1:101477688-101477707 | None:intergenic | 45.0% | |
| CTGGAAATTTAGTGCCCTTG+TGG | + | Chr1:101476544-101476563 | None:intergenic | 45.0% | |
| CTTCTTAGAAGTCAACGCAG+AGG | - | Chr1:101477649-101477668 | MsG0180006210.01.T01:intron | 45.0% | |
| TACTCTCTTGCTGATCCATC+TGG | - | Chr1:101476837-101476856 | MsG0180006210.01.T01:intron | 45.0% | |
| TGAAGTTTCCACAGAGGATG+GGG | + | Chr1:101477687-101477706 | None:intergenic | 45.0% | |
| TGCCAGAAATACAAAGCAGC+CGG | + | Chr1:101476375-101476394 | None:intergenic | 45.0% | |
| ! | ATGGAAGCATATGCTACAGG+TGG | + | Chr1:101477770-101477789 | None:intergenic | 45.0% |
| ! | CAAAAACGGGAAAGGTGCAA+TGG | + | Chr1:101477789-101477808 | None:intergenic | 45.0% |
| ! | CTTGCCTGCCTTTGATCTTT+TGG | + | Chr1:101477733-101477752 | None:intergenic | 45.0% |
| ! | GCAATGGAAGCATATGCTAC+AGG | + | Chr1:101477773-101477792 | None:intergenic | 45.0% |
| ! | GTTACACTGGTTGCTGCATT+TGG | - | Chr1:101476700-101476719 | MsG0180006210.01.T01:CDS | 45.0% |
| ! | TCTGAAGTTTCCACAGAGGA+TGG | + | Chr1:101477689-101477708 | None:intergenic | 45.0% |
| ! | TTCCGGCTGCTTTGTATTTC+TGG | - | Chr1:101476370-101476389 | MsG0180006210.01.T01:three_prime_UTR | 45.0% |
| ! | TTTGAAATCCCCATCCTCTG+TGG | - | Chr1:101477676-101477695 | MsG0180006210.01.T01:intron | 45.0% |
| !! | AAACAGCATTGGTGGCTATG+AGG | - | Chr1:101476864-101476883 | MsG0180006210.01.T01:intron | 45.0% |
| !! | AGAAGTGTTGGTTATCCGTG+CGG | + | Chr1:101477634-101477653 | None:intergenic | 45.0% |
| !! | ATCTCCCCGTTTTTATGGCT+GGG | - | Chr1:101477594-101477613 | MsG0180006210.01.T01:intron | 45.0% |
| !! | CATCTCTGAAGTTTCCACAG+AGG | + | Chr1:101477693-101477712 | None:intergenic | 45.0% |
| !! | TATCTCCCCGTTTTTATGGC+TGG | - | Chr1:101477593-101477612 | MsG0180006210.01.T01:intron | 45.0% |
| !!! | CTGTCCCTCACCTTTTTTTG+TGG | - | Chr1:101476292-101476311 | MsG0180006210.01.T01:three_prime_UTR | 45.0% |
| ACCGCACTAAGGAAAGAGCT+CGG | - | Chr1:101477546-101477565 | MsG0180006210.01.T01:intron | 50.0% | |
| AGTCACACCCCCTGTTTACA+TGG | + | Chr1:101477453-101477472 | None:intergenic | 50.0% | |
| AGTGCCCTTGTGGTTCAAAC+TGG | + | Chr1:101476534-101476553 | None:intergenic | 50.0% | |
| GAAGCCCAGCCATAAAAACG+GGG | + | Chr1:101477601-101477620 | None:intergenic | 50.0% | |
| GTCACACCCCCTGTTTACAT+GGG | + | Chr1:101477452-101477471 | None:intergenic | 50.0% | |
| TCCGAGCTCTTTCCTTAGTG+CGG | + | Chr1:101477550-101477569 | None:intergenic | 50.0% | |
| ! | TAAACAGGGGGTGTGACTTC+AGG | - | Chr1:101477455-101477474 | MsG0180006210.01.T01:intron | 50.0% |
| CATCTGGGCGGAAACAGCAT+TGG | - | Chr1:101476853-101476872 | MsG0180006210.01.T01:intron | 55.0% | |
| CTCTTGCTGATCCATCTGGG+CGG | - | Chr1:101476841-101476860 | MsG0180006210.01.T01:intron | 55.0% | |
| GCCATGGCCCATGAGCAAAA+AGG | + | Chr1:101477195-101477214 | None:intergenic | 55.0% | |
| GCTTCTAATTCACCGCCGCA+CGG | - | Chr1:101477616-101477635 | MsG0180006210.01.T01:intron | 55.0% | |
| GGAGCAGGCAAAAACGGGAA+AGG | + | Chr1:101477797-101477816 | None:intergenic | 55.0% | |
| GTGTCGTGAGGACTATGCTG+CGG | - | Chr1:101476425-101476444 | MsG0180006210.01.T01:three_prime_UTR | 55.0% | |
| TGTCGTGAGGACTATGCTGC+GGG | - | Chr1:101476426-101476445 | MsG0180006210.01.T01:three_prime_UTR | 55.0% | |
| ! | GCCTTTTTGCTCATGGGCCA+TGG | - | Chr1:101477191-101477210 | MsG0180006210.01.T01:intron | 55.0% |
| !! | AGTGTTGGTTATCCGTGCGG+CGG | + | Chr1:101477631-101477650 | None:intergenic | 55.0% |
| !! | CAATGCTGTTTCCGCCCAGA+TGG | + | Chr1:101476855-101476874 | None:intergenic | 55.0% |
| !! | TTCAGATGGGCTGCAGCTTC+TGG | - | Chr1:101476321-101476340 | MsG0180006210.01.T01:three_prime_UTR | 55.0% |
| GTGAGGACTATGCTGCGGGA+GGG | - | Chr1:101476430-101476449 | MsG0180006210.01.T01:three_prime_UTR | 60.0% | |
| ! | CAGGGGGTGTGACTTCAGGA+TGG | - | Chr1:101477459-101477478 | MsG0180006210.01.T01:intron | 60.0% |
| ! | CTGGGCGGAAACAGCATTGG+TGG | - | Chr1:101476856-101476875 | MsG0180006210.01.T01:intron | 60.0% |
| CGTGAGGACTATGCTGCGGG+AGG | - | Chr1:101476429-101476448 | MsG0180006210.01.T01:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 101476279 | 101478038 | 101476279 | ID=MsG0180006210.01;Name=MsG0180006210.01 |
| Chr1 | mRNA | 101476279 | 101478038 | 101476279 | ID=MsG0180006210.01.T01;Parent=MsG0180006210.01;Name=MsG0180006210.01.T01;_AED=0.48;_eAED=0.56;_QI=0|0|0.33|1|0.5|0.66|3|203|219 |
| Chr1 | exon | 101476279 | 101476855 | 101476279 | ID=MsG0180006210.01.T01:exon:15069;Parent=MsG0180006210.01.T01 |
| Chr1 | exon | 101476951 | 101477036 | 101476951 | ID=MsG0180006210.01.T01:exon:15068;Parent=MsG0180006210.01.T01 |
| Chr1 | exon | 101477839 | 101478038 | 101477839 | ID=MsG0180006210.01.T01:exon:15067;Parent=MsG0180006210.01.T01 |
| Chr1 | CDS | 101477839 | 101478038 | 101477839 | ID=MsG0180006210.01.T01:cds;Parent=MsG0180006210.01.T01 |
| Chr1 | CDS | 101476951 | 101477036 | 101476951 | ID=MsG0180006210.01.T01:cds;Parent=MsG0180006210.01.T01 |
| Chr1 | CDS | 101476482 | 101476855 | 101476482 | ID=MsG0180006210.01.T01:cds;Parent=MsG0180006210.01.T01 |
| Chr1 | three_prime_UTR | 101476279 | 101476481 | 101476279 | ID=MsG0180006210.01.T01:three_prime_utr;Parent=MsG0180006210.01.T01 |
| Gene Sequence |
| Protein sequence |
