AlfalfaGEDB | MsG0380013934.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013934.01

KEGG: -
GO: GO:0017004 GO:0020037
PFAM: PF01578

Nr:

Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013934.01.T03	YP_009141663.1	100	181	1	181	143	323	4.37E-127	370
MsG0380013934.01.T01	YP_009141663.1	100	323	1	323	1	323	0	651
MsG0380013934.01.T02	YP_009141663.1	100	187	1	187	137	323	3.83E-132	383
MsG0380013934.01.T04	YP_009141663.1	100	129	1	129	195	323	8.83E-88	268

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013934.01.T01	Q9BBP4	88.854	323	36	1	323	1	323	0	582
MsG0380013934.01.T02	Q9BBP4	87.701	187	23	1	187	137	323	4.19E-117	338
MsG0380013934.01.T03	Q9BBP4	87.293	181	23	1	181	143	323	6.37E-112	324
MsG0380013934.01.T04	Q9BBP4	92.248	129	10	1	129	195	323	2.21E-83	249

Trembl:

Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013934.01.T01	A0A1J0I0D3	100.000	323	1	323	1	323	0.0	651
MsG0380013934.01.T02	A0A1J0I0D3	100.000	187	1	187	137	323	1.83e-132	383
MsG0380013934.01.T03	A0A0F6NLW8	100.000	181	1	181	143	323	2.09e-127	370
MsG0380013934.01.T04	A0A1J0I0D3	100.000	129	1	129	195	323	4.22e-88	268

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048560.01	MsG0380013934.01	0.812313	4.515373e-51	2.861330e-48
MsG0080048690.01	MsG0380013934.01	0.824295	8.719599e-54	7.691399e-51
MsG0080048691.01	MsG0380013934.01	0.843677	1.209881e-58	1.907323e-55
MsG0080048692.01	MsG0380013934.01	0.817694	2.887515e-52	2.117675e-49
MsG0080048694.01	MsG0380013934.01	0.819242	1.286894e-52	9.849399e-50
MsG0080048695.01	MsG0380013934.01	0.819575	1.080580e-52	8.347701e-50
MsG0080048697.01	MsG0380013934.01	0.813369	2.650770e-51	1.727883e-48
MsG0080048698.01	MsG0380013934.01	0.801696	7.973147e-49	3.832374e-46
MsG0080049076.01	MsG0380013934.01	0.801561	8.496069e-49	4.069936e-46
MsG0180002439.01	MsG0380013934.01	0.803320	3.688277e-49	1.847770e-46
MsG0380013448.01	MsG0380013934.01	0.820994	5.110612e-53	4.107181e-50
MsG0380013890.01	MsG0380013934.01	0.803410	3.532488e-49	1.773883e-46
MsG0380013892.01	MsG0380013934.01	0.802544	5.334116e-49	2.619998e-46
MsG0380013921.01	MsG0380013934.01	0.808711	2.707528e-50	1.559099e-47
MsG0380013926.01	MsG0380013934.01	0.814629	1.397923e-51	9.428514e-49
MsG0380013928.01	MsG0380013934.01	0.817140	3.848258e-52	2.779742e-49
MsG0380013934.01	MsG0380013940.01	0.841834	3.737289e-58	5.559484e-55
MsG0380013934.01	MsG0380013943.01	0.844319	8.135842e-59	1.308535e-55
MsG0380013934.01	MsG0380013945.01	0.813199	2.888494e-51	1.873983e-48
MsG0380013934.01	MsG0380013953.01	0.810255	1.262135e-50	7.571515e-48
MsG0380013934.01	MsG0380013956.01	0.808375	3.193845e-50	1.823236e-47
MsG0380013934.01	MsG0380013957.01	0.806088	9.748723e-50	5.244327e-47
MsG0380013934.01	MsG0380013966.01	0.826274	2.968128e-54	2.770659e-51
MsG0380013934.01	MsG0380013967.01	0.808720	2.696630e-50	1.553142e-47
MsG0380013934.01	MsG0380013971.01	0.817461	3.258764e-52	2.374814e-49
MsG0380013934.01	MsG0380013975.01	0.813145	2.968727e-51	1.923173e-48
MsG0380013934.01	MsG0380013977.01	0.812427	4.263772e-51	2.710314e-48
MsG0380013934.01	MsG0380013986.01	0.802539	5.346903e-49	2.625954e-46
MsG0380013934.01	MsG0380013997.01	0.815071	1.115204e-51	7.611659e-49
MsG0380013934.01	MsG0380013999.01	0.806941	6.440648e-50	3.541305e-47
MsG0380013934.01	MsG0380014005.01	0.818147	2.281576e-52	1.694143e-49
MsG0380013934.01	MsG0380014016.01	0.807947	3.941260e-50	2.224489e-47
MsG0380013934.01	MsG0380014017.01	0.819984	8.715575e-53	6.810274e-50
MsG0380013934.01	MsG0380014020.01	0.819981	8.730554e-53	6.821280e-50
MsG0380013934.01	MsG0380014023.01	0.815350	9.673029e-52	6.652865e-49
MsG0380013934.01	MsG0380014026.01	0.818694	1.714913e-52	1.292733e-49
MsG0380013934.01	MsG0380014029.01	0.822884	1.865391e-53	1.581257e-50
MsG0380013934.01	MsG0380014031.01	0.985758	1.427750e-164	6.066398e-158
MsG0380013934.01	MsG0380014032.01	0.812212	4.750430e-51	3.002142e-48
MsG0380013934.01	MsG0380014033.01	0.826244	3.017765e-54	2.814547e-51
MsG0380013934.01	MsG0480018296.01	0.822878	1.871641e-53	1.586293e-50
MsG0380013934.01	MsG0480019028.01	0.802260	6.104333e-49	2.976660e-46
MsG0380013934.01	MsG0580027677.01	0.833448	5.302769e-56	6.108821e-53
MsG0380013934.01	MsG0780038197.01	0.805278	1.442269e-49	7.598721e-47
MsG0280010137.01	MsG0380013934.01	0.812987	3.215600e-51	2.074299e-48
MsG0280010142.01	MsG0380013934.01	0.821881	3.188999e-53	2.627246e-50
MsG0280010144.01	MsG0380013934.01	0.810907	9.127580e-51	5.571550e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013934.01.T03	MTR_4g006130	98.895	181	2	0	1	181	143	323	1.48e-129	366
MsG0380013934.01.T03	MTR_4g006180	77.019	161	5	1	10	170	56	184	5.90e-79	233
MsG0380013934.01.T03	MTR_0002s0180	82.353	102	18	0	78	179	243	344	1.44e-55	179
MsG0380013934.01.T03	MTR_0002s0180	57.971	69	29	0	56	124	26	94	3.93e-21	89.0
MsG0380013934.01.T03	MTR_0002s0180	72.340	47	13	0	78	124	87	133	2.14e-16	75.9
MsG0380013934.01.T03	MTR_0002s0180	72.340	47	13	0	78	124	126	172	2.14e-16	75.9
MsG0380013934.01.T03	MTR_0002s0180	72.340	47	13	0	78	124	165	211	2.14e-16	75.9
MsG0380013934.01.T01	MTR_4g006130	99.381	323	2	0	1	323	1	323	0.0	647
MsG0380013934.01.T01	MTR_4g006180	77.019	161	5	1	152	312	56	184	1.54e-77	235
MsG0380013934.01.T01	MTR_0002s0180	82.353	102	18	0	220	321	243	344	2.66e-54	181
MsG0380013934.01.T01	MTR_0002s0180	57.971	69	29	0	198	266	26	94	6.34e-20	89.4
MsG0380013934.01.T01	MTR_0002s0180	72.340	47	13	0	220	266	87	133	1.09e-15	77.0
MsG0380013934.01.T01	MTR_0002s0180	72.340	47	13	0	220	266	126	172	1.09e-15	77.0
MsG0380013934.01.T01	MTR_0002s0180	72.340	47	13	0	220	266	165	211	1.09e-15	77.0
MsG0380013934.01.T01	MTR_4g050940	97.959	49	1	0	92	140	492	540	2.48e-23	100
MsG0380013934.01.T02	MTR_4g006130	98.930	187	2	0	1	187	137	323	1.49e-134	379
MsG0380013934.01.T02	MTR_4g006180	77.019	161	5	1	16	176	56	184	3.99e-79	234
MsG0380013934.01.T02	MTR_0002s0180	82.353	102	18	0	84	185	243	344	8.71e-56	180
MsG0380013934.01.T02	MTR_0002s0180	57.971	69	29	0	62	130	26	94	3.62e-21	89.4
MsG0380013934.01.T02	MTR_0002s0180	72.340	47	13	0	84	130	87	133	1.95e-16	76.3
MsG0380013934.01.T02	MTR_0002s0180	72.340	47	13	0	84	130	126	172	1.95e-16	76.3
MsG0380013934.01.T02	MTR_0002s0180	72.340	47	13	0	84	130	165	211	1.95e-16	76.3
MsG0380013934.01.T04	MTR_4g006130	99.225	129	1	0	1	129	195	323	4.14e-91	266
MsG0380013934.01.T04	MTR_0002s0180	82.353	102	18	0	26	127	243	344	2.79e-55	176
MsG0380013934.01.T04	MTR_0002s0180	57.143	70	30	0	3	72	25	94	1.49e-21	88.2
MsG0380013934.01.T04	MTR_0002s0180	72.340	47	13	0	26	72	87	133	9.45e-17	75.1
MsG0380013934.01.T04	MTR_0002s0180	72.340	47	13	0	26	72	126	172	9.45e-17	75.1
MsG0380013934.01.T04	MTR_0002s0180	72.340	47	13	0	26	72	165	211	9.45e-17	75.1
MsG0380013934.01.T04	MTR_4g006180	95.000	80	4	0	39	118	105	184	2.20e-49	156
MsG0380013934.01.T04	MTR_4g086560	71.429	35	10	0	60	94	2	36	4.45e-11	54.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013934.01.T03	ATCG01040	66.667	186	54	4	1	181	146	328	1.66e-80	242
MsG0380013934.01.T01	ATCG01040	69.486	331	90	6	1	323	1	328	6.79e-158	444
MsG0380013934.01.T02	ATCG01040	67.708	192	54	4	1	187	140	328	1.06e-85	256
MsG0380013934.01.T04	ATCG01040	74.809	131	31	1	1	129	198	328	4.59e-68	208

Find 59 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATAATTTGGATATGTTATT+TGG	0.035368	3:+48458473	MsG0380013934.01.T01:CDS
CTATCGGATTTCTTATAATT+TGG	0.090975	3:+48458460	MsG0380013934.01.T01:CDS
TTAACGATAGGTATTCTTTC+AGG	0.167286	3:+48458288	MsG0380013934.01.T01:CDS
TATTACAGATTGATGCATTT+TGG	0.187687	3:-48457935	None:intergenic
TCTTGGTAAAAGCAAGAATT+TGG	0.187850	3:-48458086	None:intergenic
GTGCGATTATTGTACTTAAA+AGG	0.208149	3:-48457867	None:intergenic
ATTCTTCTCGAAATTATTAT+AGG	0.227957	3:+48458202	MsG0380013934.01.T01:CDS
TACGATTTCATTGACTAATA+AGG	0.242439	3:-48457662	None:intergenic
GGGTTATCGTATTATTAGTC+TGG	0.260155	3:+48458254	MsG0380013934.01.T01:CDS
ATAATTTGGATATGTTATTT+GGG	0.278059	3:+48458474	MsG0380013934.01.T01:CDS
AATCACTAATCTTTCTTTCA+TGG	0.299061	3:+48457797	MsG0380013934.01.T01:CDS
TATTTGGGGATCAATCTATT+AGG	0.301881	3:+48458489	MsG0380013934.01.T01:CDS
ATAAATCACTAAATGGTAAA+TGG	0.304107	3:-48457771	None:intergenic
ACCCAAGGCTTTGCGACTTC+GGG	0.307724	3:+48457904	MsG0380013934.01.T01:CDS
GATTCATATAAATCACTAAA+TGG	0.322875	3:-48457778	None:intergenic
GTCTCAATTTATTCAACAAT+TGG	0.332140	3:+48458224	MsG0380013934.01.T01:CDS
GTATTCTTTCAGGGGCAGTA+TGG	0.344438	3:+48458298	MsG0380013934.01.T01:CDS
GCACGTAAGTATGATGATAT+TGG	0.355525	3:+48457993	MsG0380013934.01.T01:CDS
ATGTAAATAAATCGCGAATA+TGG	0.365724	3:-48458388	None:intergenic
GGGATCAATCTATTAGGAAT+AGG	0.369297	3:+48458495	MsG0380013934.01.T01:CDS
TATTCAACAATTGGATCGTT+GGG	0.371301	3:+48458233	MsG0380013934.01.T01:CDS
CACGTAAGTATGATGATATT+GGG	0.380365	3:+48457994	MsG0380013934.01.T01:CDS
ATAAAGGCCCAAGTTTCCTT+TGG	0.387633	3:-48458357	None:intergenic
TACCCAAGGCTTTGCGACTT+CGG	0.388084	3:+48457903	MsG0380013934.01.T01:CDS
AAACTTGGGCCTTTATTACT+TGG	0.389612	3:+48458364	MsG0380013934.01.T01:CDS
CTTTGGATCCCAATTCCAAT+AGG	0.398232	3:-48458340	None:intergenic
ATCACTAATCTTTCTTTCAT+GGG	0.410243	3:+48457798	MsG0380013934.01.T01:CDS
GAATATGGTCCAAGTAATAA+AGG	0.424917	3:-48458373	None:intergenic
GGAATAGGACTACATAGTTA+TGG	0.437532	3:+48458510	MsG0380013934.01.T01:CDS
GACCCGAAGTCGCAAAGCCT+TGG	0.441648	3:-48457906	None:intergenic
TTATTCAACAATTGGATCGT+TGG	0.445183	3:+48458232	MsG0380013934.01.T01:CDS
AGGTGTAAATTCTTCAATAG+TGG	0.446752	3:+48458434	MsG0380013934.01.T01:CDS
CAGTATGGGCTAACGAGGCA+TGG	0.456884	3:+48458313	MsG0380013934.01.T01:CDS
TAACGATAGGTATTCTTTCA+GGG	0.458341	3:+48458289	MsG0380013934.01.T01:CDS
AGTATGGGCTAACGAGGCAT+GGG	0.460941	3:+48458314	MsG0380013934.01.T01:CDS
ATTGGGATCCAAAGGAAACT+TGG	0.468487	3:+48458349	MsG0380013934.01.T01:CDS
ACCCGAAGTCGCAAAGCCTT+GGG	0.479576	3:-48457905	None:intergenic
GGTTATCGTATTATTAGTCT+GGG	0.494225	3:+48458255	MsG0380013934.01.T01:CDS
AGCCAATGGGATTGTAGAGC+GGG	0.500187	3:-48457964	None:intergenic
GGTAAAAGCAAGAATTTGGA+TGG	0.503442	3:-48458082	None:intergenic
TGAAATAACAATTGATATGA+CGG	0.507150	3:-48457626	None:intergenic
AATTATAAGAAATCCGATAG+AGG	0.510146	3:-48458457	None:intergenic
TATTCTTTCAGGGGCAGTAT+GGG	0.510856	3:+48458299	MsG0380013934.01.T01:CDS
TACGTGCATCATTAGCCAAT+GGG	0.516863	3:-48457977	None:intergenic
TCTTCAATAGTGGCCTCTAT+CGG	0.533237	3:+48458444	MsG0380013934.01.T01:CDS
CGGGATTGTTAATTACTCGT+TGG	0.536402	3:+48457737	MsG0380013934.01.T01:CDS
TTGGGATCCAAAGGAAACTT+GGG	0.548159	3:+48458350	MsG0380013934.01.T01:CDS
TCACTAATCTTTCTTTCATG+GGG	0.566422	3:+48457799	MsG0380013934.01.T01:CDS
TAATTTGGATATGTTATTTG+GGG	0.573007	3:+48458475	MsG0380013934.01.T01:CDS
GTATGGGCTAACGAGGCATG+GGG	0.574025	3:+48458315	MsG0380013934.01.T01:CDS
TACCCGCTCTACAATCCCAT+TGG	0.579531	3:+48457962	MsG0380013934.01.T01:CDS
TTATTAGTCAATGAAATCGT+AGG	0.583517	3:+48457664	MsG0380013934.01.T01:CDS
AACGATAGGTATTCTTTCAG+GGG	0.592337	3:+48458290	MsG0380013934.01.T01:CDS
CTATTGGAATTGGGATCCAA+AGG	0.598303	3:+48458341	MsG0380013934.01.T01:CDS
TTACGTGCATCATTAGCCAA+TGG	0.601096	3:-48457978	None:intergenic
ATTCAACAATTGGATCGTTG+GGG	0.609925	3:+48458234	MsG0380013934.01.T01:CDS
AGGGGCAGTATGGGCTAACG+AGG	0.651343	3:+48458308	MsG0380013934.01.T01:CDS
TAGCCAATGGGATTGTAGAG+CGG	0.669534	3:-48457965	None:intergenic
TATGGGCTAACGAGGCATGG+GGG	0.692845	3:+48458316	MsG0380013934.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGAAAAAATAAAAAATTTGA+AGG	+	Chr3:48458414-48458433	MsG0380013934.01.T01:CDS	10.0%
!!	ATTTAAAAAATCCAAATTCT+TGG	-	Chr3:48458106-48458125	None:intergenic	15.0%
!!	TATAATTTGGATATGTTATT+TGG	+	Chr3:48458473-48458492	MsG0380013934.01.T01:CDS	15.0%
!!!	ATAATTTGGATATGTTATTT+GGG	+	Chr3:48458474-48458493	MsG0380013934.01.T01:CDS	15.0%
!!!	TTTTTTTCCTTTTTAAAACA+CGG	-	Chr3:48457847-48457866	None:intergenic	15.0%
!!	ACAGAAAAAAGTTATTATCA+TGG	-	Chr3:48457713-48457732	None:intergenic	20.0%
!!	ATAAATCACTAAATGGTAAA+TGG	-	Chr3:48457774-48457793	None:intergenic	20.0%
!!	ATTCTTCTCGAAATTATTAT+AGG	+	Chr3:48458202-48458221	MsG0380013934.01.T01:CDS	20.0%
!!	GATTCATATAAATCACTAAA+TGG	-	Chr3:48457781-48457800	None:intergenic	20.0%
!!	TGAAATAACAATTGATATGA+CGG	-	Chr3:48457629-48457648	None:intergenic	20.0%
!!!	AATAACTTTTTTCTGTGTAA+CGG	+	Chr3:48457717-48457736	MsG0380013934.01.T01:CDS	20.0%
!!!	TAATTTGGATATGTTATTTG+GGG	+	Chr3:48458475-48458494	MsG0380013934.01.T01:CDS	20.0%
!!!	TTTTATTTCGACAAAATCAA+CGG	-	Chr3:48458133-48458152	None:intergenic	20.0%
!	AATCACTAATCTTTCTTTCA+TGG	+	Chr3:48457797-48457816	MsG0380013934.01.T01:CDS	25.0%
!	AATTATAAGAAATCCGATAG+AGG	-	Chr3:48458460-48458479	None:intergenic	25.0%
!	ATCACTAATCTTTCTTTCAT+GGG	+	Chr3:48457798-48457817	MsG0380013934.01.T01:CDS	25.0%
!	ATGTAAATAAATCGCGAATA+TGG	-	Chr3:48458391-48458410	None:intergenic	25.0%
!	CTATCGGATTTCTTATAATT+TGG	+	Chr3:48458460-48458479	MsG0380013934.01.T01:CDS	25.0%
!	GTCTCAATTTATTCAACAAT+TGG	+	Chr3:48458224-48458243	MsG0380013934.01.T01:CDS	25.0%
!	TTATTAGTCAATGAAATCGT+AGG	+	Chr3:48457664-48457683	MsG0380013934.01.T01:CDS	25.0%
!!	TACGATTTCATTGACTAATA+AGG	-	Chr3:48457665-48457684	None:intergenic	25.0%
!!	TATTACAGATTGATGCATTT+TGG	-	Chr3:48457938-48457957	None:intergenic	25.0%
!!!	AATTACTCGTTGGTTTTTTT+CGG	+	Chr3:48457747-48457766	MsG0380013934.01.T01:CDS	25.0%
!!!	AGTTATTATCATGGCTTTTT+TGG	-	Chr3:48457704-48457723	None:intergenic	25.0%
!!!	ATAACTTTTTTCTGTGTAAC+GGG	+	Chr3:48457718-48457737	MsG0380013934.01.T01:CDS	25.0%
	AGGTGTAAATTCTTCAATAG+TGG	+	Chr3:48458434-48458453	MsG0380013934.01.T01:CDS	30.0%
	CACGTAAGTATGATGATATT+GGG	+	Chr3:48457994-48458013	MsG0380013934.01.T01:CDS	30.0%
	GAATATGGTCCAAGTAATAA+AGG	-	Chr3:48458376-48458395	None:intergenic	30.0%
	GTGCGATTATTGTACTTAAA+AGG	-	Chr3:48457870-48457889	None:intergenic	30.0%
	TAACGATAGGTATTCTTTCA+GGG	+	Chr3:48458289-48458308	MsG0380013934.01.T01:CDS	30.0%
	TATTCAACAATTGGATCGTT+GGG	+	Chr3:48458233-48458252	MsG0380013934.01.T01:CDS	30.0%
	TATTTGGGGATCAATCTATT+AGG	+	Chr3:48458489-48458508	MsG0380013934.01.T01:CDS	30.0%
	TCACTAATCTTTCTTTCATG+GGG	+	Chr3:48457799-48457818	MsG0380013934.01.T01:CDS	30.0%
	TCTTGGTAAAAGCAAGAATT+TGG	-	Chr3:48458089-48458108	None:intergenic	30.0%
	TTAACGATAGGTATTCTTTC+AGG	+	Chr3:48458288-48458307	MsG0380013934.01.T01:CDS	30.0%
	TTATTCAACAATTGGATCGT+TGG	+	Chr3:48458232-48458251	MsG0380013934.01.T01:CDS	30.0%
!	GGTTATCGTATTATTAGTCT+GGG	+	Chr3:48458255-48458274	MsG0380013934.01.T01:CDS	30.0%
!!	GGGTTTTTCCATTTTTCATA+TGG	+	Chr3:48457819-48457838	MsG0380013934.01.T01:CDS	30.0%
!!	TCTTGCTTTTACCAAGAATT+TGG	+	Chr3:48458092-48458111	MsG0380013934.01.T01:CDS	30.0%
!!!	ATTACTCGTTGGTTTTTTTC+GGG	+	Chr3:48457748-48457767	MsG0380013934.01.T01:CDS	30.0%
!!!	GGTTTTCTGTTTTTAACGAT+AGG	+	Chr3:48458276-48458295	MsG0380013934.01.T01:CDS	30.0%
!!!	TATGGTTCCGTGTTTTAAAA+AGG	+	Chr3:48457837-48457856	MsG0380013934.01.T01:CDS	30.0%
	AAACTTGGGCCTTTATTACT+TGG	+	Chr3:48458364-48458383	MsG0380013934.01.T01:CDS	35.0%
	AACGATAGGTATTCTTTCAG+GGG	+	Chr3:48458290-48458309	MsG0380013934.01.T01:CDS	35.0%
	ACACGGAACCATATGAAAAA+TGG	-	Chr3:48457830-48457849	None:intergenic	35.0%
	ATTCAACAATTGGATCGTTG+GGG	+	Chr3:48458234-48458253	MsG0380013934.01.T01:CDS	35.0%
	CCTTGGGTAAAAATAACACT+TGG	-	Chr3:48457892-48457911	None:intergenic	35.0%
	GCACGTAAGTATGATGATAT+TGG	+	Chr3:48457993-48458012	MsG0380013934.01.T01:CDS	35.0%
	GGAATAGGACTACATAGTTA+TGG	+	Chr3:48458510-48458529	MsG0380013934.01.T01:CDS	35.0%
	GGGATCAATCTATTAGGAAT+AGG	+	Chr3:48458495-48458514	MsG0380013934.01.T01:CDS	35.0%
	GGGTTATCGTATTATTAGTC+TGG	+	Chr3:48458254-48458273	MsG0380013934.01.T01:CDS	35.0%
	GGTAAAAGCAAGAATTTGGA+TGG	-	Chr3:48458085-48458104	None:intergenic	35.0%
!!!	CCAAGTGTTATTTTTACCCA+AGG	+	Chr3:48457889-48457908	MsG0380013934.01.T01:CDS	35.0%
	ATAAAGGCCCAAGTTTCCTT+TGG	-	Chr3:48458360-48458379	None:intergenic	40.0%
	ATTGGGATCCAAAGGAAACT+TGG	+	Chr3:48458349-48458368	MsG0380013934.01.T01:CDS	40.0%
	CGGGATTGTTAATTACTCGT+TGG	+	Chr3:48457737-48457756	MsG0380013934.01.T01:CDS	40.0%
	CTATTGGAATTGGGATCCAA+AGG	+	Chr3:48458341-48458360	MsG0380013934.01.T01:CDS	40.0%
	CTTTGGATCCCAATTCCAAT+AGG	-	Chr3:48458343-48458362	None:intergenic	40.0%
	TACGTGCATCATTAGCCAAT+GGG	-	Chr3:48457980-48457999	None:intergenic	40.0%
	TATTCTTTCAGGGGCAGTAT+GGG	+	Chr3:48458299-48458318	MsG0380013934.01.T01:CDS	40.0%
	TCTTCAATAGTGGCCTCTAT+CGG	+	Chr3:48458444-48458463	MsG0380013934.01.T01:CDS	40.0%
	TTACGTGCATCATTAGCCAA+TGG	-	Chr3:48457981-48458000	None:intergenic	40.0%
	TTGGGATCCAAAGGAAACTT+GGG	+	Chr3:48458350-48458369	MsG0380013934.01.T01:CDS	40.0%
	ATGGGGGTCCTATTGGAATT+GGG	+	Chr3:48458332-48458351	MsG0380013934.01.T01:CDS	45.0%
	GTATTCTTTCAGGGGCAGTA+TGG	+	Chr3:48458298-48458317	MsG0380013934.01.T01:CDS	45.0%
	TAGCCAATGGGATTGTAGAG+CGG	-	Chr3:48457968-48457987	None:intergenic	45.0%
!	GGCTATGCAGCTCTTTTATG+TGG	+	Chr3:48458015-48458034	MsG0380013934.01.T01:CDS	45.0%
	AGCCAATGGGATTGTAGAGC+GGG	-	Chr3:48457967-48457986	None:intergenic	50.0%
	CATGGGGGTCCTATTGGAAT+TGG	+	Chr3:48458331-48458350	MsG0380013934.01.T01:CDS	50.0%
	TACCCAAGGCTTTGCGACTT+CGG	+	Chr3:48457903-48457922	MsG0380013934.01.T01:CDS	50.0%
	TACCCGCTCTACAATCCCAT+TGG	+	Chr3:48457962-48457981	MsG0380013934.01.T01:CDS	50.0%
!	AGTATGGGCTAACGAGGCAT+GGG	+	Chr3:48458314-48458333	MsG0380013934.01.T01:CDS	50.0%
	ACCCAAGGCTTTGCGACTTC+GGG	+	Chr3:48457904-48457923	MsG0380013934.01.T01:CDS	55.0%
	ACCCGAAGTCGCAAAGCCTT+GGG	-	Chr3:48457908-48457927	None:intergenic	55.0%
!	CAGTATGGGCTAACGAGGCA+TGG	+	Chr3:48458313-48458332	MsG0380013934.01.T01:CDS	55.0%
!	GTATGGGCTAACGAGGCATG+GGG	+	Chr3:48458315-48458334	MsG0380013934.01.T01:CDS	55.0%
!	TATGGGCTAACGAGGCATGG+GGG	+	Chr3:48458316-48458335	MsG0380013934.01.T01:CDS	55.0%
	ACGAGGCATGGGGGTCCTAT+TGG	+	Chr3:48458325-48458344	MsG0380013934.01.T01:CDS	60.0%
	GACCCGAAGTCGCAAAGCCT+TGG	-	Chr3:48457909-48457928	None:intergenic	60.0%
!	AGGGGCAGTATGGGCTAACG+AGG	+	Chr3:48458308-48458327	MsG0380013934.01.T01:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	48457580	48458551	48457580	ID=MsG0380013934.01;Name=MsG0380013934.01
Chr3	mRNA	48457580	48458551	48457580	ID=MsG0380013934.01.T01;Parent=MsG0380013934.01;Name=MsG0380013934.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|323
Chr3	exon	48457580	48458551	48457580	ID=MsG0380013934.01.T01:exon:57057;Parent=MsG0380013934.01.T01
Chr3	CDS	48457580	48458551	48457580	ID=MsG0380013934.01.T01:cds;Parent=MsG0380013934.01.T01
Chr3	mRNA	48457988	48458551	48457988	ID=MsG0380013934.01.T02;Parent=MsG0380013934.01;Name=MsG0380013934.01.T02;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|187
Chr3	exon	48457988	48458551	48457988	ID=MsG0380013934.01.T02:exon:57058;Parent=MsG0380013934.01.T02
Chr3	CDS	48457988	48458551	48457988	ID=MsG0380013934.01.T02:cds;Parent=MsG0380013934.01.T02
Chr3	mRNA	48458006	48458551	48458006	ID=MsG0380013934.01.T03;Parent=MsG0380013934.01;Name=MsG0380013934.01.T03;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|181
Chr3	exon	48458006	48458551	48458006	ID=MsG0380013934.01.T03:exon:57059;Parent=MsG0380013934.01.T03
Chr3	CDS	48458006	48458551	48458006	ID=MsG0380013934.01.T03:cds;Parent=MsG0380013934.01.T03
Chr3	mRNA	48458162	48458551	48458162	ID=MsG0380013934.01.T04;Parent=MsG0380013934.01;Name=MsG0380013934.01.T04;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|129
Chr3	exon	48458162	48458551	48458162	ID=MsG0380013934.01.T04:exon:57060;Parent=MsG0380013934.01.T04
Chr3	CDS	48458162	48458551	48458162	ID=MsG0380013934.01.T04:cds;Parent=MsG0380013934.01.T04
Chr3	mRNA	48458166	48458291	48458166	ID=MsG0380013934.01.T05;Parent=MsG0380013934.01;Name=MsG0380013934.01.T05;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|41
Chr3	exon	48458166	48458291	48458166	ID=MsG0380013934.01.T05:exon:57061;Parent=MsG0380013934.01.T05
Chr3	CDS	48458166	48458291	48458166	ID=MsG0380013934.01.T05:cds;Parent=MsG0380013934.01.T05
Chr3	mRNA	48458332	48458415	48458332	ID=MsG0380013934.01.T06;Parent=MsG0380013934.01;Name=MsG0380013934.01.T06;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|27
Chr3	exon	48458332	48458415	48458332	ID=MsG0380013934.01.T06:exon:57062;Parent=MsG0380013934.01.T06
Chr3	CDS	48458332	48458415	48458332	ID=MsG0380013934.01.T06:cds;Parent=MsG0380013934.01.T06
Chr3	mRNA	48458485	48458526	48458485	ID=MsG0380013934.01.T07;Parent=MsG0380013934.01;Name=MsG0380013934.01.T07;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|13
Chr3	exon	48458485	48458526	48458485	ID=MsG0380013934.01.T07:exon:57063;Parent=MsG0380013934.01.T07
Chr3	CDS	48458485	48458526	48458485	ID=MsG0380013934.01.T07:cds;Parent=MsG0380013934.01.T07

Gene Sequence

>MsG0380013934.01.T07

ATGTTATTTGGGGATCAATCTATTAGGAATAGGACTACATAG

>MsG0380013934.01.T03

ATGATATTGGGCTATGCAGCTCTTTTATGTGGATCATTATTATCAGTAGCTATTTTAGTCATTACGTTTCAAGAAGCCATCCAAATTCTTGCTTTTACCAAGAATTTGGATTTTTTAAATAAATCCGTTGATTTTGTCGAAATAAAATACATGAATATGAATGAAAGAAACAATGTTTTACGAAAAACATCTTTTTATTCTTCTCGAAATTATTATAGGTCTCAATTTATTCAACAATTGGATCGTTGGGGTTATCGTATTATTAGTCTGGGTTTTCTGTTTTTAACGATAGGTATTCTTTCAGGGGCAGTATGGGCTAACGAGGCATGGGGGTCCTATTGGAATTGGGATCCAAAGGAAACTTGGGCCTTTATTACTTGGACCATATTCGCGATTTATTTACATACTAGAAAAAATAAAAAATTTGAAGGTGTAAATTCTTCAATAGTGGCCTCTATCGGATTTCTTATAATTTGGATATGTTATTTGGGGATCAATCTATTAGGAATAGGACTACATAGTTATGGTTCATTTACATCTAATTAA

>MsG0380013934.01.T01

ATGATATTTTCAACTTTAGAGCATATATTAACTCATATATCGTTTTCCGTCATATCAATTGTTATTTCAATTCATTTGATAACCTTATTAGTCAATGAAATCGTAGGATTATATGATTTGTCCAAAAAAGCCATGATAATAACTTTTTTCTGTGTAACGGGATTGTTAATTACTCGTTGGTTTTTTTCGGGCCATTTACCATTTAGTGATTTATATGAATCACTAATCTTTCTTTCATGGGGTTTTTCCATTTTTCATATGGTTCCGTGTTTTAAAAAGGAAAAAAACCTTTTAAGTACAATAATCGCACCAAGTGTTATTTTTACCCAAGGCTTTGCGACTTCGGGTCTTTTAACCAAAATGCATCAATCTGTAATATTAGTACCCGCTCTACAATCCCATTGGCTAATGATGCACGTAAGTATGATGATATTGGGCTATGCAGCTCTTTTATGTGGATCATTATTATCAGTAGCTATTTTAGTCATTACGTTTCAAGAAGCCATCCAAATTCTTGCTTTTACCAAGAATTTGGATTTTTTAAATAAATCCGTTGATTTTGTCGAAATAAAATACATGAATATGAATGAAAGAAACAATGTTTTACGAAAAACATCTTTTTATTCTTCTCGAAATTATTATAGGTCTCAATTTATTCAACAATTGGATCGTTGGGGTTATCGTATTATTAGTCTGGGTTTTCTGTTTTTAACGATAGGTATTCTTTCAGGGGCAGTATGGGCTAACGAGGCATGGGGGTCCTATTGGAATTGGGATCCAAAGGAAACTTGGGCCTTTATTACTTGGACCATATTCGCGATTTATTTACATACTAGAAAAAATAAAAAATTTGAAGGTGTAAATTCTTCAATAGTGGCCTCTATCGGATTTCTTATAATTTGGATATGTTATTTGGGGATCAATCTATTAGGAATAGGACTACATAGTTATGGTTCATTTACATCTAATTAA

>MsG0380013934.01.T06

ATGGGGGTCCTATTGGAATTGGGATCCAAAGGAAACTTGGGCCTTTATTACTTGGACCATATTCGCGATTTATTTACATACTAG

>MsG0380013934.01.T05

ATGAAAGAAACAATGTTTTACGAAAAACATCTTTTTATTCTTCTCGAAATTATTATAGGTCTCAATTTATTCAACAATTGGATCGTTGGGGTTATCGTATTATTAGTCTGGGTTTTCTGTTTTTAA

>MsG0380013934.01.T02

ATGATGCACGTAAGTATGATGATATTGGGCTATGCAGCTCTTTTATGTGGATCATTATTATCAGTAGCTATTTTAGTCATTACGTTTCAAGAAGCCATCCAAATTCTTGCTTTTACCAAGAATTTGGATTTTTTAAATAAATCCGTTGATTTTGTCGAAATAAAATACATGAATATGAATGAAAGAAACAATGTTTTACGAAAAACATCTTTTTATTCTTCTCGAAATTATTATAGGTCTCAATTTATTCAACAATTGGATCGTTGGGGTTATCGTATTATTAGTCTGGGTTTTCTGTTTTTAACGATAGGTATTCTTTCAGGGGCAGTATGGGCTAACGAGGCATGGGGGTCCTATTGGAATTGGGATCCAAAGGAAACTTGGGCCTTTATTACTTGGACCATATTCGCGATTTATTTACATACTAGAAAAAATAAAAAATTTGAAGGTGTAAATTCTTCAATAGTGGCCTCTATCGGATTTCTTATAATTTGGATATGTTATTTGGGGATCAATCTATTAGGAATAGGACTACATAGTTATGGTTCATTTACATCTAATTAA

>MsG0380013934.01.T04

ATGAATGAAAGAAACAATGTTTTACGAAAAACATCTTTTTATTCTTCTCGAAATTATTATAGGTCTCAATTTATTCAACAATTGGATCGTTGGGGTTATCGTATTATTAGTCTGGGTTTTCTGTTTTTAACGATAGGTATTCTTTCAGGGGCAGTATGGGCTAACGAGGCATGGGGGTCCTATTGGAATTGGGATCCAAAGGAAACTTGGGCCTTTATTACTTGGACCATATTCGCGATTTATTTACATACTAGAAAAAATAAAAAATTTGAAGGTGTAAATTCTTCAATAGTGGCCTCTATCGGATTTCTTATAATTTGGATATGTTATTTGGGGATCAATCTATTAGGAATAGGACTACATAGTTATGGTTCATTTACATCTAATTAA

Protein sequence

>MsG0380013934.01.T07

MLFGDQSIRNRTT*

>MsG0380013934.01.T03

MILGYAALLCGSLLSVAILVITFQEAIQILAFTKNLDFLNKSVDFVEIKYMNMNERNNVLRKTSFYSSRNYYRSQFIQQLDRWGYRIISLGFLFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRKNKKFEGVNSSIVASIGFLIIWICYLGINLLGIGLHSYGSFTSN*

>MsG0380013934.01.T01

MIFSTLEHILTHISFSVISIVISIHLITLLVNEIVGLYDLSKKAMIITFFCVTGLLITRWFFSGHLPFSDLYESLIFLSWGFSIFHMVPCFKKEKNLLSTIIAPSVIFTQGFATSGLLTKMHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVITFQEAIQILAFTKNLDFLNKSVDFVEIKYMNMNERNNVLRKTSFYSSRNYYRSQFIQQLDRWGYRIISLGFLFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRKNKKFEGVNSSIVASIGFLIIWICYLGINLLGIGLHSYGSFTSN*

>MsG0380013934.01.T06

MGVLLELGSKGNLGLYYLDHIRDLFTY*

>MsG0380013934.01.T05

MKETMFYEKHLFILLEIIIGLNLFNNWIVGVIVLLVWVFCF*

>MsG0380013934.01.T02

MMHVSMMILGYAALLCGSLLSVAILVITFQEAIQILAFTKNLDFLNKSVDFVEIKYMNMNERNNVLRKTSFYSSRNYYRSQFIQQLDRWGYRIISLGFLFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRKNKKFEGVNSSIVASIGFLIIWICYLGINLLGIGLHSYGSFTSN*

>MsG0380013934.01.T04

MNERNNVLRKTSFYSSRNYYRSQFIQQLDRWGYRIISLGFLFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRKNKKFEGVNSSIVASIGFLIIWICYLGINLLGIGLHSYGSFTSN*