AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013921.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013921.01.T01 MTR_0002s0420 90.370 135 13 0 94 228 518 652 1.16e-78 254
MsG0380013921.01.T01 MTR_8g016520 94.048 84 5 0 1 84 5 88 4.26e-48 161
MsG0380013921.01.T01 MTR_4g051120 97.590 83 2 0 1 83 5 87 3.86e-46 167
MsG0380013921.01.T01 MTR_0002s0510 93.827 81 5 0 1 81 1672 1752 1.68e-43 159
MsG0380013921.01.T01 MTR_2g080240 95.775 71 3 0 1 71 24 94 1.76e-42 142
MsG0380013921.01.T01 MTR_8g056780 100.000 62 0 0 242 303 1 62 5.38e-33 116
MsG0380013921.01.T01 MTR_7g016660 84.091 44 7 0 176 219 3 46 2.82e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013921.01.T01 ATCG00280 96.825 126 4 0 94 219 193 318 3.48e-82 256
MsG0380013921.01.T01 ATCG00170 96.203 79 3 0 1 79 1 79 1.00e-42 157
MsG0380013921.01.T01 ATCG00300 96.774 62 2 0 242 303 1 62 5.58e-32 114

Find 62 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAACAACAAAGTTCTATT+TGG 0.190821 3:+48407224 MsG0380013921.01.T01:CDS
TCTGCTAATAAGTCGTTTAA+TGG 0.223864 3:-48407053 None:intergenic
CTTAGTCCAAGTATTATATT+TGG 0.231830 3:+48408032 MsG0380013921.01.T01:CDS
TATTTACTAAAATCTCCTTT+TGG 0.269825 3:+48408056 MsG0380013921.01.T01:CDS
AGGTACACCAATCAATAAAA+TGG 0.272913 3:-48409512 None:intergenic
GACGATTTGGAAGACATAAT+TGG 0.289718 3:+48408104 MsG0380013921.01.T01:CDS
TTTGTATACTTGGTGGAATC+TGG 0.304089 3:+48408150 MsG0380013921.01.T01:CDS
TTATAGCTTGTTGCTTTGTC+TGG 0.310487 3:+48408273 MsG0380013921.01.T01:CDS
AACTTTGTTGTTCAGCATCT+TGG 0.334259 3:-48407216 None:intergenic
CAAATATAATACTTGGACTA+AGG 0.349842 3:-48408031 None:intergenic
TAAGGGGTCAAAAGGGGTGG+GGG 0.353022 3:+48409393 MsG0380013921.01.T01:intron
ACTGCTACATCTATTTCATT+AGG 0.354727 3:+48407151 MsG0380013921.01.T01:CDS
TTGGGTTCCATTTGTATACT+TGG 0.367420 3:+48408140 MsG0380013921.01.T01:CDS
TGGACTAGCCATCCTTTAGA+AGG 0.382153 3:-48407196 None:intergenic
GGGCTCGTCGTGCACTAGTA+TGG 0.390161 3:+48408198 MsG0380013921.01.T01:CDS
AGCAGATTAATAGACCATTT+CGG 0.411046 3:+48407070 MsG0380013921.01.T01:CDS
GCTTGAGCTTGAGAAGCTTC+CGG 0.413608 3:-48408341 None:intergenic
GTTGTATTTGCTTCTCCTGA+TGG 0.417220 3:+48409535 MsG0380013921.01.T01:CDS
GATTGTTAGTGTGGACGATT+TGG 0.426455 3:+48408091 MsG0380013921.01.T01:CDS
TTAAGGGGTCAAAAGGGGTG+GGG 0.433606 3:+48409392 MsG0380013921.01.T01:intron
ACATAATTGGAGGGCATGTA+TGG 0.439924 3:+48408117 MsG0380013921.01.T01:CDS
GGTTCCATTTGTATACTTGG+TGG 0.444145 3:+48408143 MsG0380013921.01.T01:CDS
GGAGGTACTTATGGCAGAAC+GGG 0.448573 3:+48406991 None:intergenic
AAGGGGTCAAAAGGGGTGGG+GGG 0.458153 3:+48409394 MsG0380013921.01.T01:intron
CTGGATCAAGTAAAGACTCT+AGG 0.462436 3:+48407115 MsG0380013921.01.T01:CDS
CTAGAGTCTTTACTTGATCC+AGG 0.463607 3:-48407114 None:intergenic
TATTTGCTTCTCCTGATGGT+TGG 0.468755 3:+48409539 MsG0380013921.01.T01:CDS
AATTGGAGGGCATGTATGGT+TGG 0.472837 3:+48408121 MsG0380013921.01.T01:CDS
ATTGGAGGGCATGTATGGTT+GGG 0.473140 3:+48408122 MsG0380013921.01.T01:CDS
TCCGGTACATCATTATGGAT+TGG 0.474883 3:+48409586 MsG0380013921.01.T01:CDS
CGTCGTGCACTAGTATGGTC+TGG 0.475241 3:+48408203 MsG0380013921.01.T01:CDS
AAATAACCAAATATAATACT+TGG 0.479056 3:-48408038 None:intergenic
GATTCCACCAAGTATACAAA+TGG 0.483879 3:-48408147 None:intergenic
ACTTGGACTAAGGGTTAAGT+TGG 0.486130 3:-48408021 None:intergenic
TTATTACTTGACCAACCATC+AGG 0.487376 3:-48409550 None:intergenic
GTCTTTCACAATAACGTGAT+AGG 0.489141 3:+48407022 MsG0380013921.01.T01:CDS
GTTATTGTGAAAGACTAGAT+TGG 0.489846 3:-48407014 None:intergenic
TCCAATCCATAATGATGTAC+CGG 0.492547 3:-48409587 None:intergenic
GGCATATACATCACACATCC+TGG 0.495134 3:+48407096 MsG0380013921.01.T01:CDS
TAACAATACCTTCTAAAGGA+TGG 0.495965 3:+48407188 MsG0380013921.01.T01:CDS
TTTAAGGGGTCAAAAGGGGT+GGG 0.499658 3:+48409391 MsG0380013921.01.T01:intron
TAGATGTAGCAGTAGCTTGA+CGG 0.516966 3:-48407141 None:intergenic
TCAGGAGAAGCAAATACAAC+AGG 0.517061 3:-48409532 None:intergenic
TCTTAACTAAACCCTTTGCA+TGG 0.520783 3:+48408177 MsG0380013921.01.T01:CDS
ATGTATATGCCATTCCGAAA+TGG 0.525535 3:-48407084 None:intergenic
TGGATCAAGTAAAGACTCTA+GGG 0.538268 3:+48407116 MsG0380013921.01.T01:CDS
AAATATAATACTTGGACTAA+GGG 0.541982 3:-48408030 None:intergenic
AGAGGGGTGGATTGTTAGTG+TGG 0.548597 3:+48408082 MsG0380013921.01.T01:CDS
GCACGACGAGCCCATGCAAA+GGG 0.561557 3:-48408188 None:intergenic
CTTAACTAAACCCTTTGCAT+GGG 0.565570 3:+48408178 MsG0380013921.01.T01:CDS
ATTGGATTAGTATTTCTAGT+GGG 0.580331 3:+48409604 MsG0380013921.01.T01:CDS
TTGAGAAGCTTCCGGTCCAG+TGG 0.585881 3:-48408333 None:intergenic
ATTAATAGACCATTTCGGAA+TGG 0.587547 3:+48407075 MsG0380013921.01.T01:CDS
GATTGGATTAGTATTTCTAG+TGG 0.595754 3:+48409603 MsG0380013921.01.T01:CDS
TGGAGGTACTTATGGCAGAA+CGG 0.603183 3:+48406990 None:intergenic
TGCACGACGAGCCCATGCAA+AGG 0.603460 3:-48408189 None:intergenic
GATTTGGAAGACATAATTGG+AGG 0.608351 3:+48408107 MsG0380013921.01.T01:CDS
GTGGGACCATAAAACTCACT+AGG 0.627713 3:-48408314 None:intergenic
TGAGAAGCTTCCGGTCCAGT+GGG 0.627895 3:-48408332 None:intergenic
ATTTGGAAGACATAATTGGA+GGG 0.634064 3:+48408108 MsG0380013921.01.T01:CDS
TTTCACAATAACGTGATAGG+TGG 0.645396 3:+48407025 MsG0380013921.01.T01:CDS
TCAGTATGGGAATGTACATG+CGG 0.691247 3:+48407257 MsG0380013921.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAATTTTATTGATTT+AGG - Chr3:48409022-48409041 None:intergenic 10.0%
!! AAAAAATAAAAAACGCATTA+TGG - Chr3:48409374-48409393 None:intergenic 15.0%
!! AAATAAAATGACTACTATTT+AGG + Chr3:48407886-48407905 MsG0380013921.01.T01:intron 15.0%
!! AAATAACCAAATATAATACT+TGG - Chr3:48408041-48408060 None:intergenic 15.0%
!! TTTATCATACATAGATAAAA+GGG - Chr3:48409212-48409231 None:intergenic 15.0%
!!! AATAAAAATGTTGTATTTTC+CGG + Chr3:48409568-48409587 MsG0380013921.01.T01:CDS 15.0%
!!! AATGCGTTTTTTATTTTTTA+AGG + Chr3:48409375-48409394 MsG0380013921.01.T01:intron 15.0%
!!! ATAAAATAGAAATTAGCTTT+TGG - Chr3:48409148-48409167 None:intergenic 15.0%
!!! ATGCGTTTTTTATTTTTTAA+GGG + Chr3:48409376-48409395 MsG0380013921.01.T01:intron 15.0%
!!! TCTAATATCTAATCTTTTTT+CGG + Chr3:48408950-48408969 MsG0380013921.01.T01:intron 15.0%
!!! TTGATTTTAGTATACATATT+GGG + Chr3:48408875-48408894 MsG0380013921.01.T01:intron 15.0%
!!! TTTGATTTTAGTATACATAT+TGG + Chr3:48408874-48408893 MsG0380013921.01.T01:intron 15.0%
!! AAATATAATACTTGGACTAA+GGG - Chr3:48408033-48408052 None:intergenic 20.0%
!! ACAAGCTATAAAAACAAAAA+CGG - Chr3:48408264-48408283 None:intergenic 20.0%
!! CTTTATCATACATAGATAAA+AGG - Chr3:48409213-48409232 None:intergenic 20.0%
!! GAATATATAATTTCTTGCTA+CGG + Chr3:48407524-48407543 MsG0380013921.01.T01:intron 20.0%
!! TTATCATACATAGATAAAAG+GGG - Chr3:48409211-48409230 None:intergenic 20.0%
!!! AAGAAATGAATCCTAATTTT+AGG + Chr3:48407334-48407353 MsG0380013921.01.T01:intron 20.0%
!!! ATTTACTAAAATCTCCTTTT+GGG + Chr3:48408057-48408076 MsG0380013921.01.T01:CDS 20.0%
!!! CTAATATCTAATCTTTTTTC+GGG + Chr3:48408951-48408970 MsG0380013921.01.T01:intron 20.0%
!!! GTATTCACTTAATTTTGTTA+GGG + Chr3:48407908-48407927 MsG0380013921.01.T01:intron 20.0%
!!! TATTTACTAAAATCTCCTTT+TGG + Chr3:48408056-48408075 MsG0380013921.01.T01:CDS 20.0%
!!! TGCGTTTTTTATTTTTTAAG+GGG + Chr3:48409377-48409396 MsG0380013921.01.T01:intron 20.0%
! AAATAAAAAACGCATTATGG+AGG - Chr3:48409371-48409390 None:intergenic 25.0%
! AAATTATCCTTGTTCATACA+TGG - Chr3:48407668-48407687 None:intergenic 25.0%
! AATAAAAAACGCATTATGGA+GGG - Chr3:48409370-48409389 None:intergenic 25.0%
! AATTATCCTTGTTCATACAT+GGG - Chr3:48407667-48407686 None:intergenic 25.0%
! CAAATATAATACTTGGACTA+AGG - Chr3:48408034-48408053 None:intergenic 25.0%
! CTTAGTCCAAGTATTATATT+TGG + Chr3:48408032-48408051 MsG0380013921.01.T01:CDS 25.0%
! GCATTAATATTTACCTAAAC+CGG - Chr3:48408428-48408447 None:intergenic 25.0%
! TATACCATATTTCAATGGAT+TGG - Chr3:48407296-48407315 None:intergenic 25.0%
! TGGAAAAACATAATCAGTAT+GGG + Chr3:48407244-48407263 MsG0380013921.01.T01:CDS 25.0%
! TTAATTTCTTCTGCAGTATT+GGG + Chr3:48407780-48407799 MsG0380013921.01.T01:intron 25.0%
! TTGGAAAAACATAATCAGTA+TGG + Chr3:48407243-48407262 MsG0380013921.01.T01:CDS 25.0%
!! AAATGGTATAGTTCTTTTGT+TGG + Chr3:48409420-48409439 MsG0380013921.01.T01:CDS 25.0%
!! ACTTAATTTTGTTAGGGATA+GGG + Chr3:48407914-48407933 MsG0380013921.01.T01:intron 25.0%
!! ACTTCATCCATTTTATTGAT+TGG + Chr3:48409505-48409524 MsG0380013921.01.T01:CDS 25.0%
!! CTTTTAACAATACCTTCTAA+AGG + Chr3:48407184-48407203 MsG0380013921.01.T01:CDS 25.0%
!! GGTATTCACTTAATTTTGTT+AGG + Chr3:48407907-48407926 MsG0380013921.01.T01:intron 25.0%
!! TTTACTAAAATCTCCTTTTG+GGG + Chr3:48408058-48408077 MsG0380013921.01.T01:CDS 25.0%
!!! ATTATATGGACTGGATTAAA+GGG - Chr3:48407369-48407388 None:intergenic 25.0%
!!! ATTGGATTAGTATTTCTAGT+GGG + Chr3:48409604-48409623 MsG0380013921.01.T01:CDS 25.0%
!!! GTATTTAAGGCTTCTTATTT+TGG + Chr3:48407949-48407968 MsG0380013921.01.T01:intron 25.0%
!!! TAGTTCTTTTGTTGGTAAAT+TGG + Chr3:48409428-48409447 MsG0380013921.01.T01:CDS 25.0%
!!! TATTTTTTAAGGGGTCAAAA+GGG + Chr3:48409386-48409405 MsG0380013921.01.T01:intron 25.0%
!!! TTATTTTTTAAGGGGTCAAA+AGG + Chr3:48409385-48409404 MsG0380013921.01.T01:intron 25.0%
!!! TTTATTGATTTAGGTTAGCT+CGG - Chr3:48409013-48409032 None:intergenic 25.0%
AAATCAATCATTTGTCCTTG+TGG - Chr3:48407464-48407483 None:intergenic 30.0%
AAATCCATTCGCTAAGAAAA+AGG + Chr3:48409039-48409058 MsG0380013921.01.T01:intron 30.0%
ACGGAATTTAAAGAACCTAA+CGG - Chr3:48408619-48408638 None:intergenic 30.0%
ACTGCTACATCTATTTCATT+AGG + Chr3:48407151-48407170 MsG0380013921.01.T01:CDS 30.0%
AGCAGATTAATAGACCATTT+CGG + Chr3:48407070-48407089 MsG0380013921.01.T01:CDS 30.0%
AGGTACACCAATCAATAAAA+TGG - Chr3:48409515-48409534 None:intergenic 30.0%
ATACCGGATTAATAGTATTC+TGG + Chr3:48407594-48407613 MsG0380013921.01.T01:intron 30.0%
ATAGTTCTTTCGAACTATAC+CGG + Chr3:48409085-48409104 MsG0380013921.01.T01:intron 30.0%
ATTAATAGACCATTTCGGAA+TGG + Chr3:48407075-48407094 MsG0380013921.01.T01:CDS 30.0%
ATTCAAAGCAATTTACGAGA+AGG + Chr3:48407488-48407507 MsG0380013921.01.T01:intron 30.0%
ATTTGGAAGACATAATTGGA+GGG + Chr3:48408108-48408127 MsG0380013921.01.T01:CDS 30.0%
CTCCTGAAAAAGACATTATA+TGG - Chr3:48407383-48407402 None:intergenic 30.0%
CTGAACAACAAAGTTCTATT+TGG + Chr3:48407224-48407243 MsG0380013921.01.T01:CDS 30.0%
CTGGATCATGCATATATATA+CGG - Chr3:48409261-48409280 None:intergenic 30.0%
CTTAATTTCTTCTGCAGTAT+TGG + Chr3:48407779-48407798 MsG0380013921.01.T01:intron 30.0%
GAAAAAGACATTATATGGAC+TGG - Chr3:48407378-48407397 None:intergenic 30.0%
GATTTCATGTCTCAATTAAG+AGG - Chr3:48408832-48408851 None:intergenic 30.0%
GCTTGTATACCATATTTCAA+TGG - Chr3:48407301-48407320 None:intergenic 30.0%
GTATGATAAAGTGACTCTAT+TGG + Chr3:48409222-48409241 MsG0380013921.01.T01:intron 30.0%
GTTATTGTGAAAGACTAGAT+TGG - Chr3:48407017-48407036 None:intergenic 30.0%
TAATATTTACCTAAACCGGT+AGG - Chr3:48408424-48408443 None:intergenic 30.0%
TACCGGATTAATAGTATTCT+GGG + Chr3:48407595-48407614 MsG0380013921.01.T01:intron 30.0%
TCTGCTAATAAGTCGTTTAA+TGG - Chr3:48407056-48407075 None:intergenic 30.0%
TTAGGTTCTTTAAATTCCGT+GGG + Chr3:48408619-48408638 MsG0380013921.01.T01:intron 30.0%
TTCCATACATAACCAAAGAA+TGG - Chr3:48407860-48407879 None:intergenic 30.0%
TTCCATTCTTTGGTTATGTA+TGG + Chr3:48407855-48407874 MsG0380013921.01.T01:intron 30.0%
! CACTTAATTTTGTTAGGGAT+AGG + Chr3:48407913-48407932 MsG0380013921.01.T01:intron 30.0%
! CTTAATTTTGTTAGGGATAG+GGG + Chr3:48407915-48407934 MsG0380013921.01.T01:intron 30.0%
! GAAGAATCTTTTCCATTCTT+TGG + Chr3:48407845-48407864 MsG0380013921.01.T01:intron 30.0%
! GGCTTTTCTTCTAGTATTTA+AGG + Chr3:48407936-48407955 MsG0380013921.01.T01:intron 30.0%
! GTCCATATAATGTCTTTTTC+AGG + Chr3:48407378-48407397 MsG0380013921.01.T01:intron 30.0%
! TAACAATACCTTCTAAAGGA+TGG + Chr3:48407188-48407207 MsG0380013921.01.T01:CDS 30.0%
! TATTTTCCGGTACATCATTA+TGG + Chr3:48409581-48409600 MsG0380013921.01.T01:CDS 30.0%
! TCTCGTAAATTGCTTTGAAT+GGG - Chr3:48407488-48407507 None:intergenic 30.0%
! TTACTAAAATCTCCTTTTGG+GGG + Chr3:48408059-48408078 MsG0380013921.01.T01:CDS 30.0%
! TTCTCGTAAATTGCTTTGAA+TGG - Chr3:48407489-48407508 None:intergenic 30.0%
!! AAAAGGGGTATTAATTCGTA+TGG - Chr3:48409196-48409215 None:intergenic 30.0%
!! CATTATATGGACTGGATTAA+AGG - Chr3:48407370-48407389 None:intergenic 30.0%
!! GATTGGATTAGTATTTCTAG+TGG + Chr3:48409603-48409622 MsG0380013921.01.T01:CDS 30.0%
!! TTATATGGACTGGATTAAAG+GGG - Chr3:48407368-48407387 None:intergenic 30.0%
!! TTCTTTTGTTGGTAAATTGG+AGG + Chr3:48409431-48409450 MsG0380013921.01.T01:CDS 30.0%
!!! AATTCCTTTTTCAAATCCTG+CGG - Chr3:48408776-48408795 None:intergenic 30.0%
!!! ATTTTTTAAGGGGTCAAAAG+GGG + Chr3:48409387-48409406 MsG0380013921.01.T01:intron 30.0%
!!! TTTAAGGCTTCTTATTTTGG+AGG + Chr3:48407952-48407971 MsG0380013921.01.T01:intron 30.0%
AAAGATTCTTCAAGAGTCTC+AGG - Chr3:48407836-48407855 None:intergenic 35.0%
AATATTAATGCGTTCTCCGA+CGG + Chr3:48408437-48408456 MsG0380013921.01.T01:intron 35.0%
ATAGTTCGAAAGAACTATCG+AGG - Chr3:48409083-48409102 None:intergenic 35.0%
ATGTATATGCCATTCCGAAA+TGG - Chr3:48407087-48407106 None:intergenic 35.0%
ATTATGTCTCTCCTAGAAGT+TGG + Chr3:48408671-48408690 MsG0380013921.01.T01:intron 35.0%
CGGTATTTATCATGCACTTT+GGG + Chr3:48407809-48407828 MsG0380013921.01.T01:intron 35.0%
CTTAACTAAACCCTTTGCAT+GGG + Chr3:48408178-48408197 MsG0380013921.01.T01:CDS 35.0%
GATTCCACCAAGTATACAAA+TGG - Chr3:48408150-48408169 None:intergenic 35.0%
GATTTGGAAGACATAATTGG+AGG + Chr3:48408107-48408126 MsG0380013921.01.T01:CDS 35.0%
GTCTTTCACAATAACGTGAT+AGG + Chr3:48407022-48407041 MsG0380013921.01.T01:CDS 35.0%
GTTAGGTTCTTTAAATTCCG+TGG + Chr3:48408618-48408637 MsG0380013921.01.T01:intron 35.0%
TACGCCAATCCATTGAAATA+TGG + Chr3:48407289-48407308 MsG0380013921.01.T01:intron 35.0%
TAGTTCGAAAGAACTATCGA+GGG - Chr3:48409082-48409101 None:intergenic 35.0%
TCCAATCCATAATGATGTAC+CGG - Chr3:48409590-48409609 None:intergenic 35.0%
TCCTATTCGTAGGTCATTTA+TGG + Chr3:48408725-48408744 MsG0380013921.01.T01:intron 35.0%
TCTTAACTAAACCCTTTGCA+TGG + Chr3:48408177-48408196 MsG0380013921.01.T01:CDS 35.0%
TGAAAAAAGACATACAGCCT+TGG + Chr3:48408558-48408577 MsG0380013921.01.T01:intron 35.0%
TGGATCAAGTAAAGACTCTA+GGG + Chr3:48407116-48407135 MsG0380013921.01.T01:CDS 35.0%
TTATTACTTGACCAACCATC+AGG - Chr3:48409553-48409572 None:intergenic 35.0%
TTCAAATAGGTTCATTGCTC+CGG - Chr3:48407621-48407640 None:intergenic 35.0%
TTGGGTTCCATTTGTATACT+TGG + Chr3:48408140-48408159 MsG0380013921.01.T01:CDS 35.0%
TTTCACAATAACGTGATAGG+TGG + Chr3:48407025-48407044 MsG0380013921.01.T01:CDS 35.0%
! GACGATTTGGAAGACATAAT+TGG + Chr3:48408104-48408123 MsG0380013921.01.T01:CDS 35.0%
! GCTACTTCTCATTTTGTTCT+AGG + Chr3:48408697-48408716 MsG0380013921.01.T01:intron 35.0%
! GCTTATCCTAGTGAGTTTTA+TGG + Chr3:48408308-48408327 MsG0380013921.01.T01:CDS 35.0%
! TGGAGGTATATATGATACCT+GGG + Chr3:48407969-48407988 MsG0380013921.01.T01:intron 35.0%
! TTGGAGGTATATATGATACC+TGG + Chr3:48407968-48407987 MsG0380013921.01.T01:intron 35.0%
! TTTGTATACTTGGTGGAATC+TGG + Chr3:48408150-48408169 MsG0380013921.01.T01:CDS 35.0%
!! AACTTTGTTGTTCAGCATCT+TGG - Chr3:48407219-48407238 None:intergenic 35.0%
!! TTATAGCTTGTTGCTTTGTC+TGG + Chr3:48408273-48408292 MsG0380013921.01.T01:CDS 35.0%
!!! ATCTAATCTTTTTTCGGGCT+CGG + Chr3:48408956-48408975 MsG0380013921.01.T01:intron 35.0%
!!! GAAATTAGCTTTTGGAGAGA+TGG - Chr3:48409140-48409159 None:intergenic 35.0%
!!! TTAGGTTAGCTCGGTTTTTT+CGG - Chr3:48409004-48409023 None:intergenic 35.0%
AAACCATTAGGACCTCTTAG+AGG - Chr3:48408524-48408543 None:intergenic 40.0%
ACCTTTCCATACTTTGTCTC+TGG + Chr3:48407747-48407766 MsG0380013921.01.T01:intron 40.0%
ACGAATGAGCGACTTCAAAT+AGG - Chr3:48407634-48407653 None:intergenic 40.0%
ACTTGGACTAAGGGTTAAGT+TGG - Chr3:48408024-48408043 None:intergenic 40.0%
AGAGGAGTCATGAAAAGAAC+AGG - Chr3:48408814-48408833 None:intergenic 40.0%
AGGATTAATGGAGATCCACA+AGG + Chr3:48407446-48407465 MsG0380013921.01.T01:intron 40.0%
AGTACTCCAGAGACAAAGTA+TGG - Chr3:48407756-48407775 None:intergenic 40.0%
AGTCGGAATGAGAGGATTAA+TGG + Chr3:48407434-48407453 MsG0380013921.01.T01:intron 40.0%
ATCCTCTCATTCCGACTAAT+TGG - Chr3:48407431-48407450 None:intergenic 40.0%
CCCAAAAATAACTTCTCCGT+CGG - Chr3:48408456-48408475 None:intergenic 40.0%
CTACTCAAGTCCAAACCATT+AGG - Chr3:48408536-48408555 None:intergenic 40.0%
CTAGAGTCTTTACTTGATCC+AGG - Chr3:48407117-48407136 None:intergenic 40.0%
CTAGGATTCTTCCTATTCGT+AGG + Chr3:48408715-48408734 MsG0380013921.01.T01:intron 40.0%
CTGGATCAAGTAAAGACTCT+AGG + Chr3:48407115-48407134 MsG0380013921.01.T01:CDS 40.0%
GAAGTAGCTAACCAACTTCT+AGG - Chr3:48408685-48408704 None:intergenic 40.0%
GATTGTTAGTGTGGACGATT+TGG + Chr3:48408091-48408110 MsG0380013921.01.T01:CDS 40.0%
GCCATAAATGACCTACGAAT+AGG - Chr3:48408729-48408748 None:intergenic 40.0%
GCGGTATTTATCATGCACTT+TGG + Chr3:48407808-48407827 MsG0380013921.01.T01:intron 40.0%
GGATTAATAGTATTCTGGGC+CGG + Chr3:48407599-48407618 MsG0380013921.01.T01:intron 40.0%
GGCCCAGAATACTATTAATC+CGG - Chr3:48407600-48407619 None:intergenic 40.0%
GGGTCAGTCATCCTAAAATT+AGG - Chr3:48407348-48407367 None:intergenic 40.0%
GGTTCCATTTGTATACTTGG+TGG + Chr3:48408143-48408162 MsG0380013921.01.T01:CDS 40.0%
GTTGTATTTGCTTCTCCTGA+TGG + Chr3:48409535-48409554 MsG0380013921.01.T01:CDS 40.0%
TAGATGTAGCAGTAGCTTGA+CGG - Chr3:48407144-48407163 None:intergenic 40.0%
TATATGACTCATGCTCCGTT+AGG + Chr3:48408601-48408620 MsG0380013921.01.T01:intron 40.0%
TATGGTCATGTTCTCTTGAG+TGG - Chr3:48409178-48409197 None:intergenic 40.0%
TATTTGCTTCTCCTGATGGT+TGG + Chr3:48409539-48409558 MsG0380013921.01.T01:CDS 40.0%
TCAGGAGAAGCAAATACAAC+AGG - Chr3:48409535-48409554 None:intergenic 40.0%
TCAGTATGGGAATGTACATG+CGG + Chr3:48407257-48407276 MsG0380013921.01.T01:CDS 40.0%
TCCAGAGACAAAGTATGGAA+AGG - Chr3:48407751-48407770 None:intergenic 40.0%
TCCGGTACATCATTATGGAT+TGG + Chr3:48409586-48409605 MsG0380013921.01.T01:CDS 40.0%
TCGCTAAGAAAAAGGAGAGA+GGG + Chr3:48409047-48409066 MsG0380013921.01.T01:intron 40.0%
TCTAAGAGGTCCTAATGGTT+TGG + Chr3:48408523-48408542 MsG0380013921.01.T01:intron 40.0%
TCTAGTTAGAGACAACGTCT+TGG + Chr3:48408373-48408392 MsG0380013921.01.T01:intron 40.0%
TCTCAAGTGCACCAATTAGT+CGG + Chr3:48407417-48407436 MsG0380013921.01.T01:intron 40.0%
TGAAATCCAATGCTTGACGT+AGG + Chr3:48408845-48408864 MsG0380013921.01.T01:intron 40.0%
TTCGCTAAGAAAAAGGAGAG+AGG + Chr3:48409046-48409065 MsG0380013921.01.T01:intron 40.0%
TTGTTCATACATGGGCTTCT+CGG - Chr3:48407659-48407678 None:intergenic 40.0%
! ACATAATTGGAGGGCATGTA+TGG + Chr3:48408117-48408136 MsG0380013921.01.T01:CDS 40.0%
! CTCTCCTTTTTCTTAGCGAA+TGG - Chr3:48409046-48409065 None:intergenic 40.0%
! GGGAGAAACTATGCGTTTTT+GGG + Chr3:48408475-48408494 MsG0380013921.01.T01:intron 40.0%
! GGGGTGTCATCTAAAATCAA+TGG + Chr3:48409331-48409350 MsG0380013921.01.T01:intron 40.0%
! TACTTCACAAAAGAGCATGC+TGG - Chr3:48409280-48409299 None:intergenic 40.0%
! TTTAGATGACACCCCTTTTG+AGG - Chr3:48409326-48409345 None:intergenic 40.0%
!! TCCGACGGAGAAGTTATTTT+TGG + Chr3:48408452-48408471 MsG0380013921.01.T01:intron 40.0%
!!! ACTATACCGGTTTTCAAGAC+CGG + Chr3:48409098-48409117 MsG0380013921.01.T01:intron 40.0%
!!! ATGTCTTTTTCAGGAGCTAG+AGG + Chr3:48407387-48407406 MsG0380013921.01.T01:intron 40.0%
!!! CCGACGGAGAAGTTATTTTT+GGG + Chr3:48408453-48408472 MsG0380013921.01.T01:intron 40.0%
!!! CGACGGAGAAGTTATTTTTG+GGG + Chr3:48408454-48408473 MsG0380013921.01.T01:intron 40.0%
!!! GACGGAGAAGTTATTTTTGG+GGG + Chr3:48408455-48408474 MsG0380013921.01.T01:intron 40.0%
!!! TAGGTTAGCTCGGTTTTTTC+GGG - Chr3:48409003-48409022 None:intergenic 40.0%
ATAGCTCCGGTCTTGAAAAC+CGG - Chr3:48409107-48409126 None:intergenic 45.0%
ATATATGATACCTGGGCTCC+AGG + Chr3:48407976-48407995 MsG0380013921.01.T01:intron 45.0%
CAACCTAGAGTAGCTAGATG+GGG - Chr3:48407696-48407715 None:intergenic 45.0%
CAACGTCTTGGAGCTAATGT+AGG + Chr3:48408385-48408404 MsG0380013921.01.T01:intron 45.0%
CACCAATTAGTCGGAATGAG+AGG + Chr3:48407426-48407445 MsG0380013921.01.T01:intron 45.0%
CAGTATCCACAACCCCTTTA+CGG - Chr3:48407552-48407571 None:intergenic 45.0%
CATCTAGCTACTCTAGGTTG+GGG + Chr3:48407696-48407715 MsG0380013921.01.T01:intron 45.0%
CCAACCTAGAGTAGCTAGAT+GGG - Chr3:48407697-48407716 None:intergenic 45.0%
CCATCTAGCTACTCTAGGTT+GGG + Chr3:48407695-48407714 MsG0380013921.01.T01:intron 45.0%
CGCTAAGAAAAAGGAGAGAG+GGG + Chr3:48409048-48409067 MsG0380013921.01.T01:intron 45.0%
GAACATCAGATGCTGGATAC+CGG + Chr3:48407578-48407597 MsG0380013921.01.T01:intron 45.0%
GAGAAGCCCATGTATGAACA+AGG + Chr3:48407658-48407677 MsG0380013921.01.T01:intron 45.0%
GCTAAGAAAAAGGAGAGAGG+GGG + Chr3:48409049-48409068 MsG0380013921.01.T01:intron 45.0%
GGCATATACATCACACATCC+TGG + Chr3:48407096-48407115 MsG0380013921.01.T01:CDS 45.0%
GGTTCTTTAAATTCCGTGGG+TGG + Chr3:48408622-48408641 MsG0380013921.01.T01:intron 45.0%
GTGATTCCTACGTCAAGCAT+TGG - Chr3:48408854-48408873 None:intergenic 45.0%
GTGGGACCATAAAACTCACT+AGG - Chr3:48408317-48408336 None:intergenic 45.0%
TATATGATACCTGGGCTCCA+GGG + Chr3:48407977-48407996 MsG0380013921.01.T01:intron 45.0%
TGTTCATACATGGGCTTCTC+GGG - Chr3:48407658-48407677 None:intergenic 45.0%
TTTAAGGGGTCAAAAGGGGT+GGG + Chr3:48409391-48409410 MsG0380013921.01.T01:intron 45.0%
! AATTGGAGGGCATGTATGGT+TGG + Chr3:48408121-48408140 MsG0380013921.01.T01:CDS 45.0%
! ACCTCTTAGAGGTTCTAACC+AGG - Chr3:48408513-48408532 None:intergenic 45.0%
! ATCTAGCTACTCTAGGTTGG+GGG + Chr3:48407697-48407716 MsG0380013921.01.T01:intron 45.0%
! ATTGGAGGGCATGTATGGTT+GGG + Chr3:48408122-48408141 MsG0380013921.01.T01:CDS 45.0%
! CCTCTTAGAGGTTCTAACCA+GGG - Chr3:48408512-48408531 None:intergenic 45.0%
! GAACCTCTAAGAGGTCCTAA+TGG + Chr3:48408518-48408537 MsG0380013921.01.T01:intron 45.0%
! GGGGAGAAACTATGCGTTTT+TGG + Chr3:48408474-48408493 MsG0380013921.01.T01:intron 45.0%
! TCTTCTGCAGTATTGGGCTT+TGG + Chr3:48407786-48407805 MsG0380013921.01.T01:intron 45.0%
!! AAAATCTCCTTTTGGGGGAG+AGG + Chr3:48408064-48408083 MsG0380013921.01.T01:CDS 45.0%
!! AAATCTCCTTTTGGGGGAGA+GGG + Chr3:48408065-48408084 MsG0380013921.01.T01:CDS 45.0%
!! AGTGAGTTTTATGGTCCCAC+TGG + Chr3:48408317-48408336 MsG0380013921.01.T01:CDS 45.0%
!! TGGACTAGCCATCCTTTAGA+AGG - Chr3:48407199-48407218 None:intergenic 45.0%
!! TTTTAAGGGGTCAAAAGGGG+TGG + Chr3:48409390-48409409 MsG0380013921.01.T01:intron 45.0%
ATATGATACCTGGGCTCCAG+GGG + Chr3:48407978-48407997 MsG0380013921.01.T01:intron 50.0%
CCCAACCTAGAGTAGCTAGA+TGG - Chr3:48407698-48407717 None:intergenic 50.0%
CCCATCTAGCTACTCTAGGT+TGG + Chr3:48407694-48407713 MsG0380013921.01.T01:intron 50.0%
CCCTGGTTAGAACCTCTAAG+AGG + Chr3:48408509-48408528 MsG0380013921.01.T01:intron 50.0%
CGTAGGTCATTTATGGCACG+CGG + Chr3:48408732-48408751 MsG0380013921.01.T01:intron 50.0%
CTTCCCCATCTAGCTACTCT+AGG + Chr3:48407690-48407709 MsG0380013921.01.T01:intron 50.0%
CTTGGCAAGAAGTCGTTCTG+CGG + Chr3:48408576-48408595 MsG0380013921.01.T01:intron 50.0%
GCTAATGTAGGATCCGCTCA+AGG + Chr3:48408397-48408416 MsG0380013921.01.T01:intron 50.0%
GCTGCCGCAGGATTTGAAAA+AGG + Chr3:48408769-48408788 MsG0380013921.01.T01:intron 50.0%
GCTGTACGAACATCAGATGC+TGG + Chr3:48407571-48407590 MsG0380013921.01.T01:intron 50.0%
GCTTGAGCTTGAGAAGCTTC+CGG - Chr3:48408344-48408363 None:intergenic 50.0%
GTAGGTCATTTATGGCACGC+GGG + Chr3:48408733-48408752 MsG0380013921.01.T01:intron 50.0%
GTGTCTATAACTTCCCCTCC+AGG - Chr3:48407729-48407748 None:intergenic 50.0%
TAAACCGGTAGGTCCTTGAG+CGG - Chr3:48408413-48408432 None:intergenic 50.0%
TCTTGCTACGGAGCCGTAAA+GGG + Chr3:48407536-48407555 MsG0380013921.01.T01:intron 50.0%
TTAAGGGGTCAAAAGGGGTG+GGG + Chr3:48409392-48409411 MsG0380013921.01.T01:intron 50.0%
TTCTTGCTACGGAGCCGTAA+AGG + Chr3:48407535-48407554 MsG0380013921.01.T01:intron 50.0%
! GTTTTATGGTCCCACTGGAC+CGG + Chr3:48408322-48408341 MsG0380013921.01.T01:CDS 50.0%
! TCTAGCTACTCTAGGTTGGG+GGG + Chr3:48407698-48407717 MsG0380013921.01.T01:intron 50.0%
! TCTGCAGTATTGGGCTTTGG+CGG + Chr3:48407789-48407808 MsG0380013921.01.T01:intron 50.0%
!! AATCTCCTTTTGGGGGAGAG+GGG + Chr3:48408066-48408085 MsG0380013921.01.T01:CDS 50.0%
!! AGAGGGGTGGATTGTTAGTG+TGG + Chr3:48408082-48408101 MsG0380013921.01.T01:CDS 50.0%
!! AGCTTTTGGAGAGATGGCTG+AGG - Chr3:48409134-48409153 None:intergenic 50.0%
!! GCTTTTGGAGAGATGGCTGA+GGG - Chr3:48409133-48409152 None:intergenic 50.0%
!!! TTTTTTCGGGCTCGGCTAAG+TGG + Chr3:48408964-48408983 MsG0380013921.01.T01:intron 50.0%
AAAGGGGTGGGGGGATCAAA+TGG + Chr3:48409403-48409422 MsG0380013921.01.T01:CDS 55.0%
CCTCGATCCACGCCTCAAAA+GGG + Chr3:48409311-48409330 MsG0380013921.01.T01:intron 55.0%
CGCAGAACGACTTCTTGCCA+AGG - Chr3:48408578-48408597 None:intergenic 55.0%
CGTCGTGCACTAGTATGGTC+TGG + Chr3:48408203-48408222 MsG0380013921.01.T01:CDS 55.0%
CTCGATCCACGCCTCAAAAG+GGG + Chr3:48409312-48409331 MsG0380013921.01.T01:intron 55.0%
CTTGCTACGGAGCCGTAAAG+GGG + Chr3:48407537-48407556 MsG0380013921.01.T01:intron 55.0%
TAAGGGGTCAAAAGGGGTGG+GGG + Chr3:48409393-48409412 MsG0380013921.01.T01:intron 55.0%
TATGATACCTGGGCTCCAGG+GGG + Chr3:48407979-48407998 MsG0380013921.01.T01:intron 55.0%
TGAGAAGCTTCCGGTCCAGT+GGG - Chr3:48408335-48408354 None:intergenic 55.0%
TTGAGAAGCTTCCGGTCCAG+TGG - Chr3:48408336-48408355 None:intergenic 55.0%
! TTTTCTTACATCCCCCCCCC+TGG - Chr3:48407997-48408016 None:intergenic 55.0%
!! GCTCAAGGACCTACCGGTTT+AGG + Chr3:48408412-48408431 MsG0380013921.01.T01:intron 55.0%
!! TGGCTGAGGGTTGATAGCTC+CGG - Chr3:48409120-48409139 None:intergenic 55.0%
!!! ATGACACCCCTTTTGAGGCG+TGG - Chr3:48409321-48409340 None:intergenic 55.0%
!!! CCTTTTGAGGCGTGGATCGA+GGG - Chr3:48409313-48409332 None:intergenic 55.0%
AAGGGGTCAAAAGGGGTGGG+GGG + Chr3:48409394-48409413 MsG0380013921.01.T01:intron 60.0%
ACGGAGCCGTAAAGGGGTTG+TGG + Chr3:48407543-48407562 MsG0380013921.01.T01:intron 60.0%
ATCCACCCCTCTCCCCCAAA+AGG - Chr3:48408074-48408093 None:intergenic 60.0%
ATGATACCTGGGCTCCAGGG+GGG + Chr3:48407980-48407999 MsG0380013921.01.T01:intron 60.0%
CCCTCGATCCACGCCTCAAA+AGG + Chr3:48409310-48409329 MsG0380013921.01.T01:intron 60.0%
CTCTGTAGCTACGCCACCCA+CGG - Chr3:48408638-48408657 None:intergenic 60.0%
GCACGACGAGCCCATGCAAA+GGG - Chr3:48408191-48408210 None:intergenic 60.0%
GGATCCGCTCAAGGACCTAC+CGG + Chr3:48408406-48408425 MsG0380013921.01.T01:intron 60.0%
GGGCTCGTCGTGCACTAGTA+TGG + Chr3:48408198-48408217 MsG0380013921.01.T01:CDS 60.0%
TGCACGACGAGCCCATGCAA+AGG - Chr3:48408192-48408211 None:intergenic 60.0%
! GCTACTCTAGGTTGGGGGGT+AGG + Chr3:48407702-48407721 MsG0380013921.01.T01:intron 60.0%
! TTTGGGATCTGCGTGCTCCC+TGG + Chr3:48408492-48408511 MsG0380013921.01.T01:intron 60.0%
!!! CCCTTTTGAGGCGTGGATCG+AGG - Chr3:48409314-48409333 None:intergenic 60.0%
GTTGGGGGGTAGGTCCTGGA+GGG + Chr3:48407712-48407731 MsG0380013921.01.T01:intron 65.0%
TGATACCTGGGCTCCAGGGG+GGG + Chr3:48407981-48408000 MsG0380013921.01.T01:intron 65.0%
TTGGGGGGTAGGTCCTGGAG+GGG + Chr3:48407713-48407732 MsG0380013921.01.T01:intron 65.0%
! CTAGGTTGGGGGGTAGGTCC+TGG + Chr3:48407708-48407727 MsG0380013921.01.T01:intron 65.0%
!! CTCCTTTTGGGGGAGAGGGG+TGG + Chr3:48408069-48408088 MsG0380013921.01.T01:CDS 65.0%
AGAGCTCGTGCAGCTGCCGC+AGG + Chr3:48408757-48408776 MsG0380013921.01.T01:intron 70.0%
ATACCTGGGCTCCAGGGGGG+GGG + Chr3:48407983-48408002 MsG0380013921.01.T01:intron 70.0%
GATACCTGGGCTCCAGGGGG+GGG + Chr3:48407982-48408001 MsG0380013921.01.T01:intron 70.0%
GGTTGGGGGGTAGGTCCTGG+AGG + Chr3:48407711-48407730 MsG0380013921.01.T01:intron 70.0%
! CATCCCCCCCCCTGGAGCCC+AGG - Chr3:48407989-48408008 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48407001 48409651 48407001 ID=MsG0380013921.01;Name=MsG0380013921.01
Chr3 mRNA 48407001 48409651 48407001 ID=MsG0380013921.01.T01;Parent=MsG0380013921.01;Name=MsG0380013921.01.T01;_AED=0.50;_eAED=0.69;_QI=0|0|0|1|0.5|0.33|3|0|303
Chr3 exon 48407001 48407278 48407001 ID=MsG0380013921.01.T01:exon:8490;Parent=MsG0380013921.01.T01
Chr3 exon 48407998 48408376 48407998 ID=MsG0380013921.01.T01:exon:8491;Parent=MsG0380013921.01.T01
Chr3 exon 48409397 48409651 48409397 ID=MsG0380013921.01.T01:exon:8492;Parent=MsG0380013921.01.T01
Chr3 CDS 48407001 48407278 48407001 ID=MsG0380013921.01.T01:cds;Parent=MsG0380013921.01.T01
Chr3 CDS 48407998 48408376 48407998 ID=MsG0380013921.01.T01:cds;Parent=MsG0380013921.01.T01
Chr3 CDS 48409397 48409651 48409397 ID=MsG0380013921.01.T01:cds;Parent=MsG0380013921.01.T01
Gene Sequence

>MsG0380013921.01.T01

ATGGCAGAACGGGCCAATCTAGTCTTTCACAATAACGTGATAGGTGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGACCATTTCGGAATGGCATATACATCACACATCCTGGATCAAGTAAAGACTCTAGGGTTCCGTCAAGCTACTGCTACATCTATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTCTATTTGGAAAAACATAATCAGTATGGGAATGTACATGCGGGGGGGGGATGTAAGAAAAATTACCAACTTAACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCTCCTTTTGGGGGAGAGGGGTGGATTGTTAGTGTGGACGATTTGGAAGACATAATTGGAGGGCATGTATGGTTGGGTTCCATTTGTATACTTGGTGGAATCTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGTCGTGCACTAGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGCAGCTTTATCCGTTTTTGTTTTTATAGCTTGTTGCTTTGTCTGGTTTAATAATACTGCTTATCCTAGTGAGTTTTATGGTCCCACTGGACCGGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGGGTCAAAAGGGGTGGGGGGATCAAATGGTATAGTTCTTTTGTTGGTAAATTGGAGGATTAGAAACATGACTATTGCTTTTCAATTAGCTGTTTTTGCATTAATTGTTACTTCATCCATTTTATTGATTGGTGTACCTGTTGTATTTGCTTCTCCTGATGGTTGGTCAAGTAATAAAAATGTTGTATTTTCCGGTACATCATTATGGATTGGATTAGTATTTCTAGTGGGTATTCTTAATTCTCTCATCTCTTGA

Protein sequence

>MsG0380013921.01.T01

MAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSIWKNIISMGMYMRGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVFVFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLGSKGVGGSNGIVLLLVNWRIRNMTIAFQLAVFALIVTSSILLIGVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS*