AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013975.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013975.01.T01 MTR_4g051370 89.764 508 0 1 1 456 1 508 0.0 898
MsG0380013975.01.T01 MTR_0002s0740 85.236 508 23 1 1 456 1 508 0.0 844
MsG0380013975.01.T01 MTR_5g041300 69.286 140 23 3 230 368 14 134 2.84e-56 184
MsG0380013975.01.T01 MTR_5g092940 97.826 46 1 0 163 208 18 63 2.04e-15 71.2
MsG0380013975.01.T01 MTR_5g041320 83.871 31 5 0 282 312 27 57 2.76e-11 61.2
MsG0380013975.01.T01 MTR_8g039420 93.103 29 2 0 425 453 10 38 4.19e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013975.01.T01 ATCG00680 87.402 508 12 1 1 456 1 508 0.0 883

Find 119 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTTTGGTCCTGGAATA+TGG 0.175670 3:+48548788 MsG0380013975.01.T01:CDS
ACTACTCCGATTGAATTATT+TGG 0.183898 3:+48549093 MsG0380013975.01.T01:CDS
TTGGATGCTCAAGTAGAATT+TGG 0.211864 3:+48549765 MsG0380013975.01.T01:CDS
CTTGCAGGGGTCGCGTGTTT+TGG 0.239036 3:+48548742 MsG0380013975.01.T01:intron
CTATAACGAATCCGGGTATT+TGG 0.240347 3:+48548560 MsG0380013975.01.T01:CDS
CCAAGGGGTTGGTTTACTTT+TGG 0.294501 3:+48549648 MsG0380013975.01.T01:CDS
ATACCCTTCATGACTCGTTT+AGG 0.319965 3:+48548496 MsG0380013975.01.T01:CDS
CCAGAGCTGTATGCATTATA+TGG 0.333216 3:-48548375 None:intergenic
ATATGCTCGACGTGCTCAAT+TGG 0.342007 3:+48549566 MsG0380013975.01.T01:CDS
TACAGCTCTGGTTGCTGGTT+GGG 0.347091 3:+48548387 MsG0380013975.01.T01:CDS
GGTGTAACTGTTGAGTTCTT+TGG 0.350413 3:+48549495 MsG0380013975.01.T01:CDS
TGCTGGTATTGATCCAGATT+TGG 0.356359 3:+48549746 MsG0380013975.01.T01:CDS
TTTGGCGCATTTCATGTAAC+AGG 0.358232 3:+48548766 MsG0380013975.01.T01:CDS
CTCCACATTGGGTCAAGAAC+AGG 0.359360 3:-48548457 None:intergenic
GGAATAGCCGTTGGTTGGTT+AGG 0.371320 3:+48549312 MsG0380013975.01.T01:CDS
TCCGATCCTTATGGACTAAC+TGG 0.374445 3:+48548814 MsG0380013975.01.T01:CDS
TCTACTTGAGCATCCAAATC+TGG 0.379441 3:-48549759 None:intergenic
ATTCCAACCACCCCACGAAT+TGG 0.390336 3:-48548524 None:intergenic
ATATGGGTATCCGATCCTTA+TGG 0.390984 3:+48548805 MsG0380013975.01.T01:CDS
TTGGTCCTACTCGTTATCAA+TGG 0.400981 3:+48549112 MsG0380013975.01.T01:CDS
TTTCATGTAACAGGATTGTT+TGG 0.403310 3:+48548775 MsG0380013975.01.T01:CDS
TACTCGTTATCAATGGGATC+AGG 0.405287 3:+48549119 MsG0380013975.01.T01:CDS
GCTCTGGTTGCTGGTTGGGC+AGG 0.405560 3:+48548391 MsG0380013975.01.T01:CDS
ATGCATACAGCTCTGGTTGC+TGG 0.413487 3:+48548382 MsG0380013975.01.T01:CDS
ATCGGCAATAATCCGGCAAA+AGG 0.425536 3:+48549252 MsG0380013975.01.T01:CDS
CTCTTCGATATATTTCTTGC+TGG 0.428423 3:-48549149 None:intergenic
ACTCTTCCAGTTAGTCCATA+AGG 0.430078 3:-48548820 None:intergenic
GCCTCTCATCATATTGCAGC+AGG 0.432974 3:+48548904 MsG0380013975.01.T01:CDS
CATATTGCAGCAGGGACATT+GGG 0.435192 3:+48548913 MsG0380013975.01.T01:CDS
CCCTCTTTGTCTCTAAAGAT+AGG 0.442243 3:-48549339 None:intergenic
TGCTGGTTGGGCAGGTTCGA+TGG 0.443741 3:+48548399 MsG0380013975.01.T01:CDS
GGATCGGATACCCATATTCC+AGG 0.444199 3:-48548799 None:intergenic
TGATTACATCGGCAATAATC+CGG 0.444716 3:+48549245 MsG0380013975.01.T01:CDS
TCGGCAATAATCCGGCAAAA+GGG 0.447500 3:+48549253 MsG0380013975.01.T01:CDS
ATCAAAGTTTATCAGAAGCT+TGG 0.447640 3:+48549193 MsG0380013975.01.T01:CDS
ACATACCCTGTCTCCACATT+GGG 0.449464 3:-48548468 None:intergenic
ATTGTTTGGTCCTGGAATAT+GGG 0.453454 3:+48548789 MsG0380013975.01.T01:CDS
AGGAGGGACTATAACGAATC+CGG 0.454466 3:+48548552 MsG0380013975.01.T01:CDS
TTCGTAGCAGTCCAAGGGGT+TGG 0.456855 3:+48549637 MsG0380013975.01.T01:CDS
GTAACAGGATTGTTTGGTCC+TGG 0.461221 3:+48548781 MsG0380013975.01.T01:CDS
TTCGATTCTGCCCTTCGAAA+AGG 0.461465 3:-48549453 None:intergenic
TGGTCCTACTCGTTATCAAT+GGG 0.471243 3:+48549113 MsG0380013975.01.T01:CDS
TCTTGACCCAATGTGGAGAC+AGG 0.476109 3:+48548462 MsG0380013975.01.T01:CDS
CCATATAATGCATACAGCTC+TGG 0.478974 3:+48548375 MsG0380013975.01.T01:CDS
TTCTTTGGTGGCGAACTCAA+TGG 0.480528 3:+48549510 MsG0380013975.01.T01:CDS
TATGCTCGACGTGCTCAATT+GGG 0.482004 3:+48549567 MsG0380013975.01.T01:CDS
AAATACAGCAGCGATACTAC+TGG 0.496309 3:-48549025 None:intergenic
TAACCAATTCGTGGGGTGGT+TGG 0.500602 3:+48548521 MsG0380013975.01.T01:CDS
GTAGGACCAAATAATTCAAT+CGG 0.506715 3:-48549099 None:intergenic
CGGCAATAATCCGGCAAAAG+GGG 0.506862 3:+48549254 MsG0380013975.01.T01:CDS
ATTGTTTAGAGCGGGCTCAA+TGG 0.506917 3:+48549278 MsG0380013975.01.T01:CDS
TTTATACAAAGGATTGCGTA+TGG 0.509769 3:+48548981 MsG0380013975.01.T01:CDS
TTATATGGACAGAAAGTAAA+CGG 0.516483 3:-48548360 None:intergenic
AAACCGTCCACACCCCATGC+TGG 0.521118 3:-48548856 None:intergenic
ATATATCGAAGAGTTGGTGC+TGG 0.521877 3:+48549159 MsG0380013975.01.T01:CDS
ATACAGCTCTGGTTGCTGGT+TGG 0.527750 3:+48548386 MsG0380013975.01.T01:CDS
GACGCACACTAAGATGGAAA+AGG 0.529491 3:-48548948 None:intergenic
TCTCCGTCGACTAAAACAAC+CGG 0.533171 3:-48549408 None:intergenic
ATGGACAGAAAGTAAACGGC+CGG 0.534197 3:-48548356 None:intergenic
AACATACCCTGTCTCCACAT+TGG 0.536160 3:-48548469 None:intergenic
GTTGCTGGAACTATGTGGTA+TGG 0.540461 3:+48549063 MsG0380013975.01.T01:CDS
GTTTAGGAATAACCAATTCG+TGG 0.542931 3:+48548512 MsG0380013975.01.T01:CDS
CAAGAAATATATCGAAGAGT+TGG 0.545222 3:+48549153 MsG0380013975.01.T01:CDS
GAGGTGGACGCACACTAAGA+TGG 0.545731 3:-48548954 None:intergenic
TATTCCTAAACGAGTCATGA+AGG 0.546475 3:-48548500 None:intergenic
TTTAGGAATAACCAATTCGT+GGG 0.546912 3:+48548513 MsG0380013975.01.T01:CDS
TACAATCTGTAAATCCAGCA+TGG 0.550889 3:+48548842 MsG0380013975.01.T01:CDS
TGTAAATCCAGCATGGGGTG+TGG 0.553431 3:+48548849 MsG0380013975.01.T01:CDS
GTAACTGTTGAGTTCTTTGG+TGG 0.553925 3:+48549498 MsG0380013975.01.T01:CDS
GGCTCAATGGACAATGGAGA+TGG 0.554201 3:+48549291 MsG0380013975.01.T01:CDS
ACAATCTGTAAATCCAGCAT+GGG 0.554402 3:+48548843 MsG0380013975.01.T01:CDS
GGGACATTGGGCATATTAGC+GGG 0.556996 3:+48548925 MsG0380013975.01.T01:CDS
GGAATAACCAATTCGTGGGG+TGG 0.560254 3:+48548517 MsG0380013975.01.T01:CDS
TCATATTGCAGCAGGGACAT+TGG 0.560322 3:+48548912 MsG0380013975.01.T01:CDS
TCCTATCTTTAGAGACAAAG+AGG 0.564108 3:+48549338 MsG0380013975.01.T01:CDS
GGCAATAATCCGGCAAAAGG+GGG 0.565030 3:+48549255 MsG0380013975.01.T01:CDS
TTGTTGTTGCTGGAACTATG+TGG 0.565145 3:+48549058 MsG0380013975.01.T01:CDS
TCCAGTTAGTCCATAAGGAT+CGG 0.567317 3:-48548815 None:intergenic
CCAAAAGTAAACCAACCCCT+TGG 0.568198 3:-48549648 None:intergenic
TGGGTCAAGAACAGGGTCAG+AGG 0.568443 3:-48548449 None:intergenic
CGGGCTACTTTAAAATCAGA+TGG 0.568576 3:+48549609 MsG0380013975.01.T01:CDS
AGGGACATTGGGCATATTAG+CGG 0.568863 3:+48548924 MsG0380013975.01.T01:CDS
ACCGTTGTATTAAATGATCC+CGG 0.577532 3:+48548337 MsG0380013975.01.T01:CDS
GAGATGGAATAGCCGTTGGT+TGG 0.578513 3:+48549307 MsG0380013975.01.T01:CDS
GGGTCAAGAACAGGGTCAGA+GGG 0.584216 3:-48548448 None:intergenic
GGAGGGACTATAACGAATCC+GGG 0.589006 3:+48548553 MsG0380013975.01.T01:CDS
AATCCAGCATGGGGTGTGGA+CGG 0.593928 3:+48548853 MsG0380013975.01.T01:CDS
TTATACAAAGGATTGCGTAT+GGG 0.594857 3:+48548982 MsG0380013975.01.T01:CDS
ACTCGTTATCAATGGGATCA+GGG 0.595193 3:+48549120 MsG0380013975.01.T01:CDS
TGGGGTGGTTGGAATATCAC+AGG 0.595673 3:+48548532 MsG0380013975.01.T01:CDS
AATGGAGATGGAATAGCCGT+TGG 0.603237 3:+48549303 MsG0380013975.01.T01:CDS
CCTTCGTAACTCCAAATACC+CGG 0.605669 3:-48548571 None:intergenic
AAGTATAGTGTCGAACAAGT+CGG 0.605792 3:+48549474 MsG0380013975.01.T01:CDS
TATATCGAAGAGTTGGTGCT+GGG 0.606691 3:+48549160 MsG0380013975.01.T01:CDS
CCTATCTTTAGAGACAAAGA+GGG 0.612438 3:+48549339 MsG0380013975.01.T01:CDS
CCTTTGTATAAACGTTGAGG+TGG 0.614258 3:-48548970 None:intergenic
CCACCTCAACGTTTATACAA+AGG 0.614699 3:+48548970 MsG0380013975.01.T01:CDS
CTTGACCCAATGTGGAGACA+GGG 0.614727 3:+48548463 MsG0380013975.01.T01:CDS
TCCACATTGGGTCAAGAACA+GGG 0.616763 3:-48548456 None:intergenic
CAGCAGCGATACTACTGGAA+AGG 0.617666 3:-48549020 None:intergenic
AATCCTTTGTATAAACGTTG+AGG 0.623652 3:-48548973 None:intergenic
ACCCTGTTCTTGACCCAATG+TGG 0.629432 3:+48548455 MsG0380013975.01.T01:CDS
CCCTGCTGCAATATGATGAG+AGG 0.631759 3:-48548905 None:intergenic
TGGACAGAAAGTAAACGGCC+GGG 0.632616 3:-48548355 None:intergenic
CCGGGTATTTGGAGTTACGA+AGG 0.633749 3:+48548571 MsG0380013975.01.T01:CDS
AGCGATACTACTGGAAAGGA+CGG 0.635836 3:-48549016 None:intergenic
ATTCCTAAACGAGTCATGAA+GGG 0.644686 3:-48548499 None:intergenic
GCCGGGATCATTTAATACAA+CGG 0.647593 3:-48548338 None:intergenic
TGATCCCATTGATAACGAGT+AGG 0.648218 3:-48549117 None:intergenic
AGAGCGGGCTCAATGGACAA+TGG 0.671336 3:+48549285 MsG0380013975.01.T01:CDS
CCTCTCATCATATTGCAGCA+GGG 0.678147 3:+48548905 MsG0380013975.01.T01:CDS
TTAGGAATAACCAATTCGTG+GGG 0.695552 3:+48548514 MsG0380013975.01.T01:CDS
CGGAGACGGAATTGTTAGAG+CGG 0.697191 3:+48549425 MsG0380013975.01.T01:CDS
AGGATGTCCTAACCAACCAA+CGG 0.698184 3:-48549319 None:intergenic
ACGGTATGAACACGATACCA+AGG 0.698258 3:-48548319 None:intergenic
CAATCTGTAAATCCAGCATG+GGG 0.708211 3:+48548844 MsG0380013975.01.T01:CDS
GTGGTTGGAATATCACAGGA+GGG 0.712192 3:+48548536 MsG0380013975.01.T01:CDS
GGTGGTTGGAATATCACAGG+AGG 0.719410 3:+48548535 MsG0380013975.01.T01:CDS
CTATCTTTAGAGACAAAGAG+GGG 0.726970 3:+48549340 MsG0380013975.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGAATTCCAAATATTTT+TGG - Chr3:48548718-48548737 None:intergenic 15.0%
!!! GTGAAATTTTTGAATTAGAT+CGG + Chr3:48549589-48549608 MsG0380013975.01.T01:CDS 20.0%
!!! TACTTTTTTTGAAACATTTC+CGG + Chr3:48549389-48549408 MsG0380013975.01.T01:CDS 20.0%
!!! TCATAAAAAGCTAATTTTTC+AGG - Chr3:48549228-48549247 None:intergenic 20.0%
!!! TGAAATTTTTGAATTAGATC+GGG + Chr3:48549590-48549609 MsG0380013975.01.T01:CDS 20.0%
!!! TTAGCTTTTTATGATTACAT+CGG + Chr3:48549234-48549253 MsG0380013975.01.T01:CDS 20.0%
!!! TTCTGATAAACTTTGATTTT+CGG - Chr3:48549190-48549209 None:intergenic 20.0%
! GGAAATGTTTCAAAAAAAGT+AGG - Chr3:48549390-48549409 None:intergenic 25.0%
! TATTTGGCATTAGGTTTATT+GGG + Chr3:48548642-48548661 MsG0380013975.01.T01:intron 25.0%
! TTATATGGACAGAAAGTAAA+CGG - Chr3:48548363-48548382 None:intergenic 25.0%
! TTGGATTTGCCAAAAATATT+TGG + Chr3:48548706-48548725 MsG0380013975.01.T01:intron 25.0%
!! AATTCATTTATTTCTTGCAG+GGG + Chr3:48548729-48548748 MsG0380013975.01.T01:intron 25.0%
!! GAATTCATTTATTTCTTGCA+GGG + Chr3:48548728-48548747 MsG0380013975.01.T01:intron 25.0%
AATCCTTTGTATAAACGTTG+AGG - Chr3:48548976-48548995 None:intergenic 30.0%
ACTACTCCGATTGAATTATT+TGG + Chr3:48549093-48549112 MsG0380013975.01.T01:CDS 30.0%
AGATCCAACTACAAAAAAAC+AGG + Chr3:48549806-48549825 MsG0380013975.01.T01:CDS 30.0%
ATCAAAGTTTATCAGAAGCT+TGG + Chr3:48549193-48549212 MsG0380013975.01.T01:CDS 30.0%
CAAGAAATATATCGAAGAGT+TGG + Chr3:48549153-48549172 MsG0380013975.01.T01:CDS 30.0%
CTATTTGGCATTAGGTTTAT+TGG + Chr3:48548641-48548660 MsG0380013975.01.T01:intron 30.0%
GTAGGACCAAATAATTCAAT+CGG - Chr3:48549102-48549121 None:intergenic 30.0%
TTATACAAAGGATTGCGTAT+GGG + Chr3:48548982-48549001 MsG0380013975.01.T01:CDS 30.0%
TTTAGGAATAACCAATTCGT+GGG + Chr3:48548513-48548532 MsG0380013975.01.T01:CDS 30.0%
TTTATACAAAGGATTGCGTA+TGG + Chr3:48548981-48549000 MsG0380013975.01.T01:CDS 30.0%
TTTCATGTAACAGGATTGTT+TGG + Chr3:48548775-48548794 MsG0380013975.01.T01:CDS 30.0%
! GGAATTCATTTATTTCTTGC+AGG + Chr3:48548727-48548746 MsG0380013975.01.T01:intron 30.0%
! TTTGCTCTTCTCTTCTTTTT+CGG + Chr3:48549681-48549700 MsG0380013975.01.T01:CDS 30.0%
!!! ATTTTTGGCAAATCCAAAGA+AGG - Chr3:48548703-48548722 None:intergenic 30.0%
ACAATCTGTAAATCCAGCAT+GGG + Chr3:48548843-48548862 MsG0380013975.01.T01:CDS 35.0%
ACCGTTGTATTAAATGATCC+CGG + Chr3:48548337-48548356 MsG0380013975.01.T01:CDS 35.0%
AGCAAAAACATCTCTGAACA+AGG - Chr3:48549730-48549749 None:intergenic 35.0%
ATTCCTAAACGAGTCATGAA+GGG - Chr3:48548502-48548521 None:intergenic 35.0%
ATTGTTTGGTCCTGGAATAT+GGG + Chr3:48548789-48548808 MsG0380013975.01.T01:CDS 35.0%
CTCTTCGATATATTTCTTGC+TGG - Chr3:48549152-48549171 None:intergenic 35.0%
GTTTAGGAATAACCAATTCG+TGG + Chr3:48548512-48548531 MsG0380013975.01.T01:CDS 35.0%
TACAATCTGTAAATCCAGCA+TGG + Chr3:48548842-48548861 MsG0380013975.01.T01:CDS 35.0%
TATTCCTAAACGAGTCATGA+AGG - Chr3:48548503-48548522 None:intergenic 35.0%
TGATTACATCGGCAATAATC+CGG + Chr3:48549245-48549264 MsG0380013975.01.T01:CDS 35.0%
TTAGGAATAACCAATTCGTG+GGG + Chr3:48548514-48548533 MsG0380013975.01.T01:CDS 35.0%
TTGGATGCTCAAGTAGAATT+TGG + Chr3:48549765-48549784 MsG0380013975.01.T01:CDS 35.0%
! AAGTATAGTGTCGAACAAGT+CGG + Chr3:48549474-48549493 MsG0380013975.01.T01:CDS 35.0%
! ATCTTTTGTGATGAACGTAC+TGG + Chr3:48548673-48548692 MsG0380013975.01.T01:intron 35.0%
! CCTATCTTTAGAGACAAAGA+GGG + Chr3:48549339-48549358 MsG0380013975.01.T01:CDS 35.0%
! CTATCTTTAGAGACAAAGAG+GGG + Chr3:48549340-48549359 MsG0380013975.01.T01:CDS 35.0%
! TAGTTGGATCTCCAAGTTTT+TGG - Chr3:48549797-48549816 None:intergenic 35.0%
! TCCTATCTTTAGAGACAAAG+AGG + Chr3:48549338-48549357 MsG0380013975.01.T01:CDS 35.0%
! TTGCTCTTCTCTTCTTTTTC+GGG + Chr3:48549682-48549701 MsG0380013975.01.T01:CDS 35.0%
! TTTGGAGCATTCCAAAAACT+TGG + Chr3:48549783-48549802 MsG0380013975.01.T01:CDS 35.0%
!! TTGTTCAGAGATGTTTTTGC+TGG + Chr3:48549729-48549748 MsG0380013975.01.T01:CDS 35.0%
!!! ACTGCCTGTTTTTTTGTAGT+TGG - Chr3:48549813-48549832 None:intergenic 35.0%
!!! GCATATTTTTTCACAGTAGC+AGG - Chr3:48549552-48549571 None:intergenic 35.0%
AAAAGGGGGATTGTTTAGAG+CGG + Chr3:48549269-48549288 MsG0380013975.01.T01:CDS 40.0%
AAATACAGCAGCGATACTAC+TGG - Chr3:48549028-48549047 None:intergenic 40.0%
ACGTACTGGAAAACCTTCTT+TGG + Chr3:48548687-48548706 MsG0380013975.01.T01:intron 40.0%
ACTCGTTATCAATGGGATCA+GGG + Chr3:48549120-48549139 MsG0380013975.01.T01:CDS 40.0%
ACTCTTCCAGTTAGTCCATA+AGG - Chr3:48548823-48548842 None:intergenic 40.0%
ATACCCTTCATGACTCGTTT+AGG + Chr3:48548496-48548515 MsG0380013975.01.T01:CDS 40.0%
ATATGGGTATCCGATCCTTA+TGG + Chr3:48548805-48548824 MsG0380013975.01.T01:CDS 40.0%
CAATCTGTAAATCCAGCATG+GGG + Chr3:48548844-48548863 MsG0380013975.01.T01:CDS 40.0%
CCACCTCAACGTTTATACAA+AGG + Chr3:48548970-48548989 MsG0380013975.01.T01:CDS 40.0%
CCAGAGCTGTATGCATTATA+TGG - Chr3:48548378-48548397 None:intergenic 40.0%
CCATATAATGCATACAGCTC+TGG + Chr3:48548375-48548394 MsG0380013975.01.T01:CDS 40.0%
CCTTTGTATAAACGTTGAGG+TGG - Chr3:48548973-48548992 None:intergenic 40.0%
CTATAACGAATCCGGGTATT+TGG + Chr3:48548560-48548579 MsG0380013975.01.T01:CDS 40.0%
GATTGTTTGGTCCTGGAATA+TGG + Chr3:48548788-48548807 MsG0380013975.01.T01:CDS 40.0%
GCCGGGATCATTTAATACAA+CGG - Chr3:48548341-48548360 None:intergenic 40.0%
GGTGTAACTGTTGAGTTCTT+TGG + Chr3:48549495-48549514 MsG0380013975.01.T01:CDS 40.0%
GTAACTGTTGAGTTCTTTGG+TGG + Chr3:48549498-48549517 MsG0380013975.01.T01:CDS 40.0%
TACTCGTTATCAATGGGATC+AGG + Chr3:48549119-48549138 MsG0380013975.01.T01:CDS 40.0%
TCCAGTTAGTCCATAAGGAT+CGG - Chr3:48548818-48548837 None:intergenic 40.0%
TCTACTTGAGCATCCAAATC+TGG - Chr3:48549762-48549781 None:intergenic 40.0%
TGGTCCTACTCGTTATCAAT+GGG + Chr3:48549113-48549132 MsG0380013975.01.T01:CDS 40.0%
TTGGTCCTACTCGTTATCAA+TGG + Chr3:48549112-48549131 MsG0380013975.01.T01:CDS 40.0%
TTTGGCGCATTTCATGTAAC+AGG + Chr3:48548766-48548785 MsG0380013975.01.T01:CDS 40.0%
! CCCTCTTTGTCTCTAAAGAT+AGG - Chr3:48549342-48549361 None:intergenic 40.0%
! TATTTGGAGTTACGAAGGTG+TGG + Chr3:48548576-48548595 MsG0380013975.01.T01:intron 40.0%
! TGTTTTTCGTAGCAGTCCAA+GGG + Chr3:48549632-48549651 MsG0380013975.01.T01:CDS 40.0%
! TTGTTGTTGCTGGAACTATG+TGG + Chr3:48549058-48549077 MsG0380013975.01.T01:CDS 40.0%
! TTTTGATCCTTTTGTTCCGG+GGG + Chr3:48548876-48548895 MsG0380013975.01.T01:CDS 40.0%
!! ATATATCGAAGAGTTGGTGC+TGG + Chr3:48549159-48549178 MsG0380013975.01.T01:CDS 40.0%
!! CGGGCTACTTTAAAATCAGA+TGG + Chr3:48549609-48549628 MsG0380013975.01.T01:CDS 40.0%
!! CGGTTTTGATCCTTTTGTTC+CGG + Chr3:48548873-48548892 MsG0380013975.01.T01:CDS 40.0%
!! GGTTTTGATCCTTTTGTTCC+GGG + Chr3:48548874-48548893 MsG0380013975.01.T01:CDS 40.0%
!! GTTTTGATCCTTTTGTTCCG+GGG + Chr3:48548875-48548894 MsG0380013975.01.T01:CDS 40.0%
!! TATATCGAAGAGTTGGTGCT+GGG + Chr3:48549160-48549179 MsG0380013975.01.T01:CDS 40.0%
!! TGATCCCATTGATAACGAGT+AGG - Chr3:48549120-48549139 None:intergenic 40.0%
!! TGCTGGTATTGATCCAGATT+TGG + Chr3:48549746-48549765 MsG0380013975.01.T01:CDS 40.0%
!!! TCTTCTTTTTCGGGCACATT+TGG + Chr3:48549691-48549710 MsG0380013975.01.T01:CDS 40.0%
!!! TTTCCGGTTGTTTTAGTCGA+CGG + Chr3:48549405-48549424 MsG0380013975.01.T01:CDS 40.0%
!!! TTTGCAGCTTTTGTTGTTGC+TGG + Chr3:48549048-48549067 MsG0380013975.01.T01:CDS 40.0%
AACATACCCTGTCTCCACAT+TGG - Chr3:48548472-48548491 None:intergenic 45.0%
AATGGAGATGGAATAGCCGT+TGG + Chr3:48549303-48549322 MsG0380013975.01.T01:CDS 45.0%
ACATACCCTGTCTCCACATT+GGG - Chr3:48548471-48548490 None:intergenic 45.0%
ACGGTATGAACACGATACCA+AGG - Chr3:48548322-48548341 None:intergenic 45.0%
AGCGATACTACTGGAAAGGA+CGG - Chr3:48549019-48549038 None:intergenic 45.0%
AGGAGGGACTATAACGAATC+CGG + Chr3:48548552-48548571 MsG0380013975.01.T01:CDS 45.0%
AGGATGTCCTAACCAACCAA+CGG - Chr3:48549322-48549341 None:intergenic 45.0%
AGGGACATTGGGCATATTAG+CGG + Chr3:48548924-48548943 MsG0380013975.01.T01:CDS 45.0%
ATATGCTCGACGTGCTCAAT+TGG + Chr3:48549566-48549585 MsG0380013975.01.T01:CDS 45.0%
ATCGGCAATAATCCGGCAAA+AGG + Chr3:48549252-48549271 MsG0380013975.01.T01:CDS 45.0%
ATGGACAGAAAGTAAACGGC+CGG - Chr3:48548359-48548378 None:intergenic 45.0%
CATATTGCAGCAGGGACATT+GGG + Chr3:48548913-48548932 MsG0380013975.01.T01:CDS 45.0%
CCAAAAGTAAACCAACCCCT+TGG - Chr3:48549651-48549670 None:intergenic 45.0%
CCTCTCATCATATTGCAGCA+GGG + Chr3:48548905-48548924 MsG0380013975.01.T01:CDS 45.0%
CCTTCGTAACTCCAAATACC+CGG - Chr3:48548574-48548593 None:intergenic 45.0%
CGAAAACACAATATGTGCCG+CGG - Chr3:48548602-48548621 None:intergenic 45.0%
GACGCACACTAAGATGGAAA+AGG - Chr3:48548951-48548970 None:intergenic 45.0%
GTAACAGGATTGTTTGGTCC+TGG + Chr3:48548781-48548800 MsG0380013975.01.T01:CDS 45.0%
GTGGTTGGAATATCACAGGA+GGG + Chr3:48548536-48548555 MsG0380013975.01.T01:CDS 45.0%
GTTGCTGGAACTATGTGGTA+TGG + Chr3:48549063-48549082 MsG0380013975.01.T01:CDS 45.0%
TATGCTCGACGTGCTCAATT+GGG + Chr3:48549567-48549586 MsG0380013975.01.T01:CDS 45.0%
TCATATTGCAGCAGGGACAT+TGG + Chr3:48548912-48548931 MsG0380013975.01.T01:CDS 45.0%
TCCACATTGGGTCAAGAACA+GGG - Chr3:48548459-48548478 None:intergenic 45.0%
TCGGCAATAATCCGGCAAAA+GGG + Chr3:48549253-48549272 MsG0380013975.01.T01:CDS 45.0%
TTCGATTCTGCCCTTCGAAA+AGG - Chr3:48549456-48549475 None:intergenic 45.0%
TTTGGCGGCTATTTGGCATT+AGG + Chr3:48548633-48548652 MsG0380013975.01.T01:intron 45.0%
! AAAGGGGGATTGTTTAGAGC+GGG + Chr3:48549270-48549289 MsG0380013975.01.T01:CDS 45.0%
! AGCGGATGTTCCTTTTCGAA+GGG + Chr3:48549443-48549462 MsG0380013975.01.T01:CDS 45.0%
! ATTGTTTAGAGCGGGCTCAA+TGG + Chr3:48549278-48549297 MsG0380013975.01.T01:CDS 45.0%
! CGCGGCACATATTGTGTTTT+CGG + Chr3:48548600-48548619 MsG0380013975.01.T01:intron 45.0%
! CTAAACAATCCCCCTTTTGC+CGG - Chr3:48549267-48549286 None:intergenic 45.0%
! GCGGCACATATTGTGTTTTC+GGG + Chr3:48548601-48548620 MsG0380013975.01.T01:intron 45.0%
! GTGTTTTTCGTAGCAGTCCA+AGG + Chr3:48549631-48549650 MsG0380013975.01.T01:CDS 45.0%
! GTTTTTCGTAGCAGTCCAAG+GGG + Chr3:48549633-48549652 MsG0380013975.01.T01:CDS 45.0%
! TCCGATCCTTATGGACTAAC+TGG + Chr3:48548814-48548833 MsG0380013975.01.T01:CDS 45.0%
! TCTCCGTCGACTAAAACAAC+CGG - Chr3:48549411-48549430 None:intergenic 45.0%
! TTTGATCCTTTTGTTCCGGG+GGG + Chr3:48548877-48548896 MsG0380013975.01.T01:CDS 45.0%
!! GTTTTCGGGCTTGTGCTTTT+TGG + Chr3:48548615-48548634 MsG0380013975.01.T01:intron 45.0%
!! TGTGCTTTTTGGCGGCTATT+TGG + Chr3:48548626-48548645 MsG0380013975.01.T01:intron 45.0%
!! TTCTTTGGTGGCGAACTCAA+TGG + Chr3:48549510-48549529 MsG0380013975.01.T01:CDS 45.0%
!!! CCAAGGGGTTGGTTTACTTT+TGG + Chr3:48549648-48549667 MsG0380013975.01.T01:CDS 45.0%
!!! GTTGTTTTAGTCGACGGAGA+CGG + Chr3:48549411-48549430 MsG0380013975.01.T01:CDS 45.0%
!!! TTTTTCGGGCACATTTGGCA+TGG + Chr3:48549696-48549715 MsG0380013975.01.T01:CDS 45.0%
ACCCTGTTCTTGACCCAATG+TGG + Chr3:48548455-48548474 MsG0380013975.01.T01:CDS 50.0%
ATTCCAACCACCCCACGAAT+TGG - Chr3:48548527-48548546 None:intergenic 50.0%
CAGCAGCGATACTACTGGAA+AGG - Chr3:48549023-48549042 None:intergenic 50.0%
CCCTGCTGCAATATGATGAG+AGG - Chr3:48548908-48548927 None:intergenic 50.0%
CGGAGACGGAATTGTTAGAG+CGG + Chr3:48549425-48549444 MsG0380013975.01.T01:CDS 50.0%
CGGCAATAATCCGGCAAAAG+GGG + Chr3:48549254-48549273 MsG0380013975.01.T01:CDS 50.0%
CTCCACATTGGGTCAAGAAC+AGG - Chr3:48548460-48548479 None:intergenic 50.0%
CTTGACCCAATGTGGAGACA+GGG + Chr3:48548463-48548482 MsG0380013975.01.T01:CDS 50.0%
GAGATGGAATAGCCGTTGGT+TGG + Chr3:48549307-48549326 MsG0380013975.01.T01:CDS 50.0%
GCCTCTCATCATATTGCAGC+AGG + Chr3:48548904-48548923 MsG0380013975.01.T01:CDS 50.0%
GGAATAACCAATTCGTGGGG+TGG + Chr3:48548517-48548536 MsG0380013975.01.T01:CDS 50.0%
GGAGGGACTATAACGAATCC+GGG + Chr3:48548553-48548572 MsG0380013975.01.T01:CDS 50.0%
GGATCGGATACCCATATTCC+AGG - Chr3:48548802-48548821 None:intergenic 50.0%
GGCAATAATCCGGCAAAAGG+GGG + Chr3:48549255-48549274 MsG0380013975.01.T01:CDS 50.0%
GGCTCAATGGACAATGGAGA+TGG + Chr3:48549291-48549310 MsG0380013975.01.T01:CDS 50.0%
GGGACATTGGGCATATTAGC+GGG + Chr3:48548925-48548944 MsG0380013975.01.T01:CDS 50.0%
GGTGGTTGGAATATCACAGG+AGG + Chr3:48548535-48548554 MsG0380013975.01.T01:CDS 50.0%
TAACCAATTCGTGGGGTGGT+TGG + Chr3:48548521-48548540 MsG0380013975.01.T01:CDS 50.0%
TCTTGACCCAATGTGGAGAC+AGG + Chr3:48548462-48548481 MsG0380013975.01.T01:CDS 50.0%
TGGACAGAAAGTAAACGGCC+GGG - Chr3:48548358-48548377 None:intergenic 50.0%
TGGGGTGGTTGGAATATCAC+AGG + Chr3:48548532-48548551 MsG0380013975.01.T01:CDS 50.0%
TGTAAATCCAGCATGGGGTG+TGG + Chr3:48548849-48548868 MsG0380013975.01.T01:CDS 50.0%
! ATACAGCTCTGGTTGCTGGT+TGG + Chr3:48548386-48548405 MsG0380013975.01.T01:CDS 50.0%
! ATGCATACAGCTCTGGTTGC+TGG + Chr3:48548382-48548401 MsG0380013975.01.T01:CDS 50.0%
! CCGGGTATTTGGAGTTACGA+AGG + Chr3:48548571-48548590 MsG0380013975.01.T01:CDS 50.0%
! GAGCGGATGTTCCTTTTCGA+AGG + Chr3:48549442-48549461 MsG0380013975.01.T01:CDS 50.0%
! GGAATAGCCGTTGGTTGGTT+AGG + Chr3:48549312-48549331 MsG0380013975.01.T01:CDS 50.0%
! TACAGCTCTGGTTGCTGGTT+GGG + Chr3:48548387-48548406 MsG0380013975.01.T01:CDS 50.0%
!! TTCGGGCTTGTGCTTTTTGG+CGG + Chr3:48548618-48548637 MsG0380013975.01.T01:intron 50.0%
AATCCAGCATGGGGTGTGGA+CGG + Chr3:48548853-48548872 MsG0380013975.01.T01:CDS 55.0%
GAGGTGGACGCACACTAAGA+TGG - Chr3:48548957-48548976 None:intergenic 55.0%
GCTATTCCCCCCGGAACAAA+AGG - Chr3:48548886-48548905 None:intergenic 55.0%
GGGTCAAGAACAGGGTCAGA+GGG - Chr3:48548451-48548470 None:intergenic 55.0%
TGATGAGAGGCTATTCCCCC+CGG - Chr3:48548895-48548914 None:intergenic 55.0%
TGGGTCAAGAACAGGGTCAG+AGG - Chr3:48548452-48548471 None:intergenic 55.0%
TTCGTAGCAGTCCAAGGGGT+TGG + Chr3:48549637-48549656 MsG0380013975.01.T01:CDS 55.0%
! AGAGCGGGCTCAATGGACAA+TGG + Chr3:48549285-48549304 MsG0380013975.01.T01:CDS 55.0%
!!! GGGGTCGCGTGTTTTGGTTT+TGG + Chr3:48548748-48548767 MsG0380013975.01.T01:intron 55.0%
AAACCGTCCACACCCCATGC+TGG - Chr3:48548859-48548878 None:intergenic 60.0%
! CTTGCAGGGGTCGCGTGTTT+TGG + Chr3:48548742-48548761 MsG0380013975.01.T01:intron 60.0%
! GAGTTACGAAGGTGTGGCCG+CGG + Chr3:48548582-48548601 MsG0380013975.01.T01:intron 60.0%
! TGCTGGTTGGGCAGGTTCGA+TGG + Chr3:48548399-48548418 MsG0380013975.01.T01:CDS 60.0%
! GCTCTGGTTGCTGGTTGGGC+AGG + Chr3:48548391-48548410 MsG0380013975.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48548310 48549836 48548310 ID=MsG0380013975.01;Name=MsG0380013975.01
Chr3 mRNA 48548310 48549836 48548310 ID=MsG0380013975.01.T01;Parent=MsG0380013975.01;Name=MsG0380013975.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|456
Chr3 exon 48548310 48548592 48548310 ID=MsG0380013975.01.T01:exon:8515;Parent=MsG0380013975.01.T01
Chr3 exon 48548749 48549836 48548749 ID=MsG0380013975.01.T01:exon:8516;Parent=MsG0380013975.01.T01
Chr3 CDS 48548310 48548592 48548310 ID=MsG0380013975.01.T01:cds;Parent=MsG0380013975.01.T01
Chr3 CDS 48548749 48549836 48548749 ID=MsG0380013975.01.T01:cds;Parent=MsG0380013975.01.T01
Gene Sequence

>MsG0380013975.01.T01

ATGGGTTTGCCTTGGTATCGTGTTCATACCGTTGTATTAAATGATCCCGGCCGTTTACTTTCTGTCCATATAATGCATACAGCTCTGGTTGCTGGTTGGGCAGGTTCGATGGCTCTATATGAATTAGCAGTTTTTGATCCCTCTGACCCTGTTCTTGACCCAATGTGGAGACAGGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCGTGGGGTGGTTGGAATATCACAGGAGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGGGTCGCGTGTTTTGGTTTTGGCGCATTTCATGTAACAGGATTGTTTGGTCCTGGAATATGGGTATCCGATCCTTATGGACTAACTGGAAGAGTACAATCTGTAAATCCAGCATGGGGTGTGGACGGTTTTGATCCTTTTGTTCCGGGGGGAATAGCCTCTCATCATATTGCAGCAGGGACATTGGGCATATTAGCGGGCCTTTTCCATCTTAGTGTGCGTCCACCTCAACGTTTATACAAAGGATTGCGTATGGGAAATATTGAAACCGTCCTTTCCAGTAGTATCGCTGCTGTATTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACTCCGATTGAATTATTTGGTCCTACTCGTTATCAATGGGATCAGGGATACTTCCAGCAAGAAATATATCGAAGAGTTGGTGCTGGGCTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTACATCGGCAATAATCCGGCAAAAGGGGGATTGTTTAGAGCGGGCTCAATGGACAATGGAGATGGAATAGCCGTTGGTTGGTTAGGACATCCTATCTTTAGAGACAAAGAGGGGCGTGAACTTTTTGTACGTCGTATGCCTACTTTTTTTGAAACATTTCCGGTTGTTTTAGTCGACGGAGACGGAATTGTTAGAGCGGATGTTCCTTTTCGAAGGGCAGAATCGAAGTATAGTGTCGAACAAGTCGGTGTAACTGTTGAGTTCTTTGGTGGCGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTCGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGGGCTACTTTAAAATCAGATGGTGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGACATGCTTCGTTTGCTCTTCTCTTCTTTTTCGGGCACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTTTTTGCTGGTATTGATCCAGATTTGGATGCTCAAGTAGAATTTGGAGCATTCCAAAAACTTGGAGATCCAACTACAAAAAAACAGGCAGTCTGA

Protein sequence

>MsG0380013975.01.T01

MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVACFGFGAFHVTGLFGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAENQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFFGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKKQAV*