AlfalfaGEDB | MsG0380014578.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014578.01

KEGG: K23343
GO: -
PFAM: PF05667

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014578.01.T01	XP_039687190.1	94.152	342	20	0	1	342	5	346	0	649

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014578.01.T01	B0WTU5	29.902	204	143	0	123	326	349	552	1.54E-24	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014578.01.T01	A0A396IS03	94.152	342	20	0	1	342	5	346	0.0	649

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048843.01	MsG0380014578.01	0.808169	3.533662e-50	2.006351e-47
MsG0080048968.01	MsG0380014578.01	0.817419	3.330554e-52	2.424283e-49
MsG0180000806.01	MsG0380014578.01	0.812759	3.607050e-51	2.312835e-48
MsG0180003627.01	MsG0380014578.01	0.841696	4.062704e-58	6.017190e-55
MsG0180004372.01	MsG0380014578.01	0.800634	1.314541e-48	6.151373e-46
MsG0180005304.01	MsG0380014578.01	0.804366	2.236327e-49	1.150922e-46
MsG0180005765.01	MsG0380014578.01	0.819853	9.335878e-53	7.267998e-50
MsG0180005842.01	MsG0380014578.01	0.817224	3.685114e-52	2.667926e-49
MsG0180005944.01	MsG0380014578.01	0.822318	2.525636e-53	2.106770e-50
MsG0180006016.01	MsG0380014578.01	0.815506	8.929373e-52	6.168017e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014578.01.T01	AT1G55830	50.177	283	136	3	50	329	77	357	3.58e-76	239
MsG0380014578.01.T01	AT1G55830	50.177	283	136	3	50	329	123	403	1.17e-75	239
MsG0380014578.01.T01	AT1G55830	50.177	283	136	3	50	329	204	484	1.04e-74	239

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Find 101 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGAGAGAAGTGCAGC+AGG	0.508410	3:-56687080	MsG0380014578.01.T01:CDS
AAATTGACAAACACAAACCT+CGG	0.647311	3:-56685848	MsG0380014578.01.T01:three_prime_UTR
AACAAGATGCTGATATTGAG+AGG	0.619407	3:-56686408	MsG0380014578.01.T01:CDS
AACCTTTATGGATGTTTACC+AGG	0.508128	3:+56686079	None:intergenic
AACTGTTAGAAGTTCAGAAG+CGG	0.586657	3:-56687738	MsG0380014578.01.T01:CDS
AAGATGAACCCCTGAATAGC+AGG	0.508972	3:-56685906	MsG0380014578.01.T01:CDS
AATCCCAAATGAATCTCTTC+CGG	0.496473	3:+56688117	None:intergenic
AATCCTTCTCCTATTGGTGA+TGG	0.536191	3:-56688088	MsG0380014578.01.T01:CDS
AATGTAAATAAATTGGACAT+AGG	0.540779	3:-56688151	MsG0380014578.01.T01:CDS
ACAGCAGGTTTATAAGCTCC+TGG	0.560649	3:-56686097	MsG0380014578.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCCATAAACAACTTGAAT+TGG	-	Chr3:56686429-56686448	MsG0380014578.01.T01:CDS	30.0%
AAGCTATAAGCTCAAATATG+TGG	-	Chr3:56686555-56686574	MsG0380014578.01.T01:intron	30.0%
AATTGGACAAATGATGAGTT+TGG	+	Chr3:56686103-56686122	None:intergenic	30.0%
AGAGAGAATGTAAGTCAATA+AGG	+	Chr3:56688784-56688803	None:intergenic	30.0%
AGAGGATCTTAAAAGAAACT+AGG	-	Chr3:56688945-56688964	MsG0380014578.01.T01:intron	30.0%
ATCGTGTAATCATATTTACC+AGG	-	Chr3:56688746-56688765	MsG0380014578.01.T01:intron	30.0%
ATCTTGATGCCGTTATTATT+AGG	-	Chr3:56689405-56689424	MsG0380014578.01.T01:intron	30.0%
CACACTTGGTCTATTATATT+AGG	+	Chr3:56688671-56688690	None:intergenic	30.0%
GAGGATCTTAAAAGAAACTA+GGG	-	Chr3:56688946-56688965	MsG0380014578.01.T01:intron	30.0%
GAGGCTTATAATGTATATTC+GGG	+	Chr3:56688358-56688377	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	56685499	56689858	56685499	ID=MsG0380014578.01;Name=MsG0380014578.01
Chr3	mRNA	56685499	56689858	56685499	ID=MsG0380014578.01.T01;Parent=MsG0380014578.01;Name=MsG0380014578.01.T01;_AED=0.45;_eAED=0.45;_QI=354\|1\|1\|1\|0.8\|0.66\|6\|398\|342
Chr3	exon	56685499	56686143	56685499	ID=MsG0380014578.01.T01:exon:23937;Parent=MsG0380014578.01.T01
Chr3	exon	56686313	56686537	56686313	ID=MsG0380014578.01.T01:exon:23936;Parent=MsG0380014578.01.T01
Chr3	exon	56687046	56687192	56687046	ID=MsG0380014578.01.T01:exon:23935;Parent=MsG0380014578.01.T01
Chr3	exon	56687593	56687783	56687593	ID=MsG0380014578.01.T01:exon:23934;Parent=MsG0380014578.01.T01
Chr3	exon	56688063	56688493	56688063	ID=MsG0380014578.01.T01:exon:23933;Parent=MsG0380014578.01.T01
Chr3	exon	56689717	56689858	56689717	ID=MsG0380014578.01.T01:exon:23932;Parent=MsG0380014578.01.T01
Chr3	five_prime_UTR	56689717	56689858	56689717	ID=MsG0380014578.01.T01:five_prime_utr;Parent=MsG0380014578.01.T01
Chr3	five_prime_UTR	56688282	56688493	56688282	ID=MsG0380014578.01.T01:five_prime_utr;Parent=MsG0380014578.01.T01
Chr3	CDS	56688063	56688281	56688063	ID=MsG0380014578.01.T01:cds;Parent=MsG0380014578.01.T01
Chr3	CDS	56687593	56687783	56687593	ID=MsG0380014578.01.T01:cds;Parent=MsG0380014578.01.T01
Chr3	CDS	56687046	56687192	56687046	ID=MsG0380014578.01.T01:cds;Parent=MsG0380014578.01.T01
Chr3	CDS	56686313	56686537	56686313	ID=MsG0380014578.01.T01:cds;Parent=MsG0380014578.01.T01
Chr3	CDS	56685897	56686143	56685897	ID=MsG0380014578.01.T01:cds;Parent=MsG0380014578.01.T01
Chr3	three_prime_UTR	56685499	56685896	56685499	ID=MsG0380014578.01.T01:three_prime_utr;Parent=MsG0380014578.01.T01

Gene Sequence

>MsG0380014578.01.T01

ATGGAGACACAGACACCTGAAATAGGAAGTACCAGCAATGACGCTTCTATCAGTCAGGCCAACAAAGACGAATCCAACTCCGTCAATGATGAATTGAATAGTGTATTAAATGTAAATAAATTGGACATAGGAGATGTTGATGCCGGAAGAGATTCATTTGGGATTGAAGAGAATCCTTCTCCTATTGGTGATGGACATTTGACAGTTTCGGAACAAAAGGGGAAAGAACTCATTGATGAAGTAACTGTTAGAAGTTCAGAAGCGGAGCATCTTGAACAAGAATTGGAACTGATGAAAGCAGCAGCTGAAATGGCATTTAATAACCAACAGTCTGTTGACTCCTACCTTGACCAGTTGACTGAACAAATACTTGCTAAAGGAAATCACCTTTCGACTTTGGAGTCAGAATGGGATGCTATAAGAAAACCCTTGGAAGAGAGAAAGAGAACTCTTGAGGAGTCTCTATATTCAAGCTGTCCAGATGCACAAGCAATGCTCCAAAAGTTGAGAGAAGTGCAGCAGGAAGAAAAGTCCATTTCATCTGAAATTAGAAAGAGGGAGGAGGAACATTCAAAACTCCTTGCAGATCTGGAAAAGCAGCAGAAAGTAGCATCTAGGAAATCCTATACTCACCGTATTGAGGAGATTACAAAAAATAGTCGCAAACAAGATGCTGATATTGAGAGGATCTTAAAAGAAACTAGGGAGGTTCAATTGGAAAGTAATTCTATCCATGAACGCTTGCATCGGACATATGCTGTTGCTGACGAAATGGTCTTTAGGGAAGCAAAGAAAGATCCCACAGGACAGCAGGTTTATAAGCTCCTGGTAAACATCCATAAAGGTTTCGAACAAATATCCGAGAAAATTCTTGCAGCTGATAGAATTAGAAGAGAAGTATCTGAATATGAAATGAAACTGGCAGCCACACCTTCCACTTCCAGAAGCTTAGATTTGAGCAAGCTACAATCTGATCTTGATGCCGTTATTATTAGGGAAGATGAACCCCTGAATAGCAGGCACAGTTGA

Protein sequence

>MsG0380014578.01.T01

METQTPEIGSTSNDASISQANKDESNSVNDELNSVLNVNKLDIGDVDAGRDSFGIEENPSPIGDGHLTVSEQKGKELIDEVTVRSSEAEHLEQELELMKAAAEMAFNNQQSVDSYLDQLTEQILAKGNHLSTLESEWDAIRKPLEERKRTLEESLYSSCPDAQAMLQKLREVQQEEKSISSEIRKREEEHSKLLADLEKQQKVASRKSYTHRIEEITKNSRKQDADIERILKETREVQLESNSIHERLHRTYAVADEMVFREAKKDPTGQQVYKLLVNIHKGFEQISEKILAADRIRREVSEYEMKLAATPSTSRSLDLSKLQSDLDAVIIREDEPLNSRHS*