AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029283.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029283.01.T01 MTR_5g083780 98.634 366 3 1 1 364 1 366 0.0 723
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029283.01.T01 AT2G40430 54.217 249 103 6 1 246 1 241 8.48e-70 226
MsG0580029283.01.T01 AT2G40430 52.941 170 79 1 197 366 275 443 3.40e-42 153
MsG0580029283.01.T01 AT2G40430 54.217 249 103 6 1 246 1 241 9.26e-70 225
MsG0580029283.01.T01 AT2G40430 52.071 169 80 1 197 365 275 442 6.36e-41 149
MsG0580029283.01.T01 AT2G40430 53.704 162 74 1 197 358 126 286 3.14e-42 149
MsG0580029283.01.T01 AT2G40430 73.563 87 23 0 1 87 1 87 5.10e-35 130

Find 70 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGTATTGTTAGAAAA+TGG 0.156439 5:-94707414 MsG0580029283.01.T01:exon
TCAACAAAAGATGCTCTTTC+TGG 0.195441 5:-94707305 MsG0580029283.01.T01:CDS
ACAGTTAAAGGCACCGGTTC+AGG 0.249592 5:+94705251 None:intergenic
TTGTCGCCTCAGATGTCTTC+TGG 0.261285 5:+94704281 None:intergenic
TTCATTGGCGACTAAACTTT+TGG 0.280238 5:+94705970 None:intergenic
TAAAGTCTACAGAAATGAAT+TGG 0.292665 5:-94705276 MsG0580029283.01.T01:CDS
TCTCCAGCAGGAACAGTTAA+AGG 0.308159 5:+94705239 None:intergenic
TTATTAAGCGAAGAGATAAA+TGG 0.314835 5:-94704040 MsG0580029283.01.T01:CDS
AACCTGTTTCTCCTGGGCTT+TGG 0.342084 5:+94703818 None:intergenic
AAAGTGTATTGTTAGAAAAT+GGG 0.342504 5:-94707413 MsG0580029283.01.T01:exon
AAGTGTCTACCTTAAGCTTT+CGG 0.364930 5:+94704011 None:intergenic
AGGCAACAAGAAAGTGAAAA+AGG 0.370426 5:-94705625 MsG0580029283.01.T01:intron
TTTGATATGTGGGGTGATAA+AGG 0.381349 5:-94705745 MsG0580029283.01.T01:intron
TTCCAAAGCCCAGGAGAAAC+AGG 0.387383 5:-94703820 MsG0580029283.01.T01:CDS
ATTTCTCAAAAGAAATTGAT+AGG 0.389918 5:-94704450 MsG0580029283.01.T01:intron
TCGCTTAATAAAACTTGAAC+AGG 0.391740 5:+94704052 None:intergenic
TGCTAAACAAGAGAGGTTAA+AGG 0.397687 5:-94704256 MsG0580029283.01.T01:CDS
TTGAGTTGAATAAGAGAATT+CGG 0.399925 5:-94704519 MsG0580029283.01.T01:CDS
TGGATCCATCCGAAAGCTTA+AGG 0.404582 5:-94704020 MsG0580029283.01.T01:intron
TTAAACCAACCTGTTTCTCC+TGG 0.418166 5:+94703811 None:intergenic
AAATGAATTGGGCCCTGAAC+CGG 0.418925 5:-94705264 MsG0580029283.01.T01:CDS
ATTCTGACGTATTTGATATG+TGG 0.431247 5:-94705756 MsG0580029283.01.T01:CDS
AAGGCACTGGCTTAACAAAC+TGG 0.432795 5:+94706035 None:intergenic
ATCTTCATGCTTAATTTCCT+CGG 0.441773 5:+94704314 None:intergenic
CGCCAATGAAAATATTCATA+AGG 0.466327 5:-94705957 MsG0580029283.01.T01:intron
GGAGGATCAACCTCGACAGC+TGG 0.470903 5:+94705469 None:intergenic
GGGTTGTTGCACCCTTCTAA+AGG 0.473919 5:-94703879 MsG0580029283.01.T01:CDS
AAAGTCTACAGAAATGAATT+GGG 0.481927 5:-94705275 MsG0580029283.01.T01:CDS
TAAACCAACCTGTTTCTCCT+GGG 0.484368 5:+94703812 None:intergenic
TCAGAAATAGCTTCTCCAGC+AGG 0.486553 5:+94705227 None:intergenic
AAGGCATGTCCTCCTCGCTT+AGG 0.491146 5:-94704237 MsG0580029283.01.T01:CDS
GTCTACCTTAAGCTTTCGGA+TGG 0.500501 5:+94704015 None:intergenic
TCCCACACATGAAAGTCATC+AGG 0.503208 5:-94705431 MsG0580029283.01.T01:intron
CAGTTAAAGGCACCGGTTCA+GGG 0.505603 5:+94705252 None:intergenic
GGAAGAAATCGAAAAGTTCA+AGG 0.508630 5:-94707391 MsG0580029283.01.T01:CDS
TATAAAAGCATAGAGAAGAG+AGG 0.512651 5:-94703851 MsG0580029283.01.T01:CDS
GTGCCTTTAACTGTTCCTGC+TGG 0.514168 5:-94705242 MsG0580029283.01.T01:CDS
AATAAAACTTGAACAGGAGC+AGG 0.514471 5:+94704058 None:intergenic
TTCTGACGTATTTGATATGT+GGG 0.515220 5:-94705755 MsG0580029283.01.T01:CDS
AAGCATAGAGAAGAGAGGGT+TGG 0.525558 5:-94703846 MsG0580029283.01.T01:CDS
GGAAATTAAGCATGAAGATG+AGG 0.529874 5:-94704310 MsG0580029283.01.T01:CDS
TGTTTCTTTAGAGTAGATGA+AGG 0.530522 5:+94706016 None:intergenic
GGTTGGTTGTTCCAAAGCCC+AGG 0.531435 5:-94703829 MsG0580029283.01.T01:CDS
AAGTGTATTGTTAGAAAATG+GGG 0.531516 5:-94707412 MsG0580029283.01.T01:exon
AATCGAAAAGTTCAAGGAAG+GGG 0.536801 5:-94707385 MsG0580029283.01.T01:CDS
TACTTGTGCTTTCCTAAGCG+AGG 0.545713 5:+94704225 None:intergenic
TTTAGAGTAGATGAAGGCAC+TGG 0.552068 5:+94706022 None:intergenic
ACCTGATGACTTTCATGTGT+GGG 0.552896 5:+94705430 None:intergenic
TACATTAGCTACTGCTGTTG+CGG 0.553793 5:-94705309 MsG0580029283.01.T01:CDS
GCTGTCGAGGTTGATCCTCC+AGG 0.559631 5:-94705466 MsG0580029283.01.T01:CDS
ACAAAAGATGCTCTTTCTGG+TGG 0.562367 5:-94707302 MsG0580029283.01.T01:CDS
GAAATCGAAAAGTTCAAGGA+AGG 0.564439 5:-94707387 MsG0580029283.01.T01:CDS
CAAGGAAGGGGAAGAAAGCA+TGG 0.569927 5:-94707373 MsG0580029283.01.T01:CDS
AAATCGAAAAGTTCAAGGAA+GGG 0.576425 5:-94707386 MsG0580029283.01.T01:CDS
TTTATACCGATCCTTTAGAA+GGG 0.578806 5:+94703868 None:intergenic
TACTCATATTCCAGCTGTCG+AGG 0.579607 5:-94705479 MsG0580029283.01.T01:CDS
ATAAAAGCATAGAGAAGAGA+GGG 0.580504 5:-94703850 MsG0580029283.01.T01:CDS
AAAGCCCAGGAGAAACAGGT+TGG 0.580924 5:-94703816 MsG0580029283.01.T01:CDS
TTTGATGTGGCTAGATCTTG+CGG 0.583564 5:-94706122 MsG0580029283.01.T01:intron
GTTGCACCCTTCTAAAGGAT+CGG 0.583877 5:-94703874 MsG0580029283.01.T01:CDS
GCAGGAACAGTTAAAGGCAC+CGG 0.584872 5:+94705245 None:intergenic
GAAAGTAATCACGAAGATGA+TGG 0.598830 5:-94705017 MsG0580029283.01.T01:CDS
TCGACAGCTGGAATATGAGT+AGG 0.600011 5:+94705481 None:intergenic
GTGGGATTAAATGAGCATCC+TGG 0.637097 5:+94705448 None:intergenic
TACCTGATGACTTTCATGTG+TGG 0.645793 5:+94705429 None:intergenic
TTGTGCTTTCCTAAGCGAGG+AGG 0.655472 5:+94704228 None:intergenic
GACAAGTTGCTAAACAAGAG+AGG 0.673783 5:-94704263 MsG0580029283.01.T01:CDS
GGATTAAATGAGCATCCTGG+AGG 0.690842 5:+94705451 None:intergenic
AAATACGTCAGAATCTAACA+CGG 0.731068 5:+94705765 None:intergenic
TCTGACGTATTTGATATGTG+GGG 0.759234 5:-94705754 MsG0580029283.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAAAATAAATAAATAAAAA+TGG + Chr5:94704043-94704062 None:intergenic 10.0%
!! TTAATTTATAATAACCAAAA+TGG + Chr5:94705563-94705582 None:intergenic 10.0%
!! TTTGGTTATTATAAATTAAT+GGG - Chr5:94705564-94705583 MsG0580029283.01.T01:intron 10.0%
!!! AAAAATCATCTTTTATTTTA+GGG + Chr5:94706883-94706902 None:intergenic 10.0%
!!! AATAAAACAAATTTTAAAAG+AGG + Chr5:94705438-94705457 None:intergenic 10.0%
!!! AATTTATTTTAAATTTGATG+TGG - Chr5:94705123-94705142 MsG0580029283.01.T01:intron 10.0%
!!! ATGTATACATTTTTATTTTA+TGG - Chr5:94706480-94706499 MsG0580029283.01.T01:intron 10.0%
!!! CCATTTTTATTTATTTATTT+TGG - Chr5:94704040-94704059 MsG0580029283.01.T01:CDS 10.0%
!!! TAAAAATCATCTTTTATTTT+AGG + Chr5:94706884-94706903 None:intergenic 10.0%
!!! TATTTTATTTTTTCAAAACA+AGG - Chr5:94704639-94704658 MsG0580029283.01.T01:intron 10.0%
!!! TTTTGGTTATTATAAATTAA+TGG - Chr5:94705563-94705582 MsG0580029283.01.T01:intron 10.0%
!! ATTAATTGCAAATATATTAG+TGG + Chr5:94706606-94706625 None:intergenic 15.0%
!! TTAAAATAAATTCAAATCCA+AGG + Chr5:94705115-94705134 None:intergenic 15.0%
!! TTTCTTTAATAATCTATATC+AGG - Chr5:94705464-94705483 MsG0580029283.01.T01:CDS 15.0%
!!! AAAATCATCTTTTATTTTAG+GGG + Chr5:94706882-94706901 None:intergenic 15.0%
!!! ATTAGTCTAAAAAAAAAGTA+AGG + Chr5:94707330-94707349 None:intergenic 15.0%
!!! GTTAAAATTCATTTTCTTTT+AGG - Chr5:94704679-94704698 MsG0580029283.01.T01:intron 15.0%
!! AAAGTGTATTGTTAGAAAAT+GGG - Chr5:94703845-94703864 MsG0580029283.01.T01:CDS 20.0%
!! ATTTCTCAAAAGAAATTGAT+AGG - Chr5:94706808-94706827 MsG0580029283.01.T01:intron 20.0%
!! CTAAATAATAATATGCTTAG+TGG - Chr5:94705351-94705370 MsG0580029283.01.T01:intron 20.0%
!! GAAAACACATCAATTATAAT+AGG + Chr5:94704931-94704950 None:intergenic 20.0%
!! TTACATACTTCTTTCAAAAA+AGG + Chr5:94706525-94706544 None:intergenic 20.0%
!! TTTAATAATCTATATCAGGA+GGG - Chr5:94705468-94705487 MsG0580029283.01.T01:CDS 20.0%
!!! AAAAGTGTATTGTTAGAAAA+TGG - Chr5:94703844-94703863 MsG0580029283.01.T01:CDS 20.0%
!!! AATACACTTTTTCAATTTTC+AGG + Chr5:94703835-94703854 None:intergenic 20.0%
!!! ACTAATTTTCCTACTTATTT+TGG - Chr5:94707344-94707363 MsG0580029283.01.T01:CDS 20.0%
!!! CAGTTTAAATACTTTCTTTT+TGG - Chr5:94706325-94706344 MsG0580029283.01.T01:intron 20.0%
!!! CATAAGTTGTTTTAGTTTTA+GGG - Chr5:94704454-94704473 MsG0580029283.01.T01:CDS 20.0%
!!! GTAACACAATCTTTTTTTTT+AGG - Chr5:94704726-94704745 MsG0580029283.01.T01:intron 20.0%
!!! TCATAAGTTGTTTTAGTTTT+AGG - Chr5:94704453-94704472 MsG0580029283.01.T01:CDS 20.0%
!!! TTTATTTTTTCAAAACAAGG+AGG - Chr5:94704642-94704661 MsG0580029283.01.T01:intron 20.0%
!!! TTTTTAGTTTTAGGTTTGTT+TGG - Chr5:94704134-94704153 MsG0580029283.01.T01:intron 20.0%
! AAAGTCTACAGAAATGAATT+GGG - Chr5:94705983-94706002 MsG0580029283.01.T01:CDS 25.0%
! AAGAACTTTATTGTTTAACC+AGG - Chr5:94705925-94705944 MsG0580029283.01.T01:intron 25.0%
! AAGTGTATTGTTAGAAAATG+GGG - Chr5:94703846-94703865 MsG0580029283.01.T01:CDS 25.0%
! AGCTTATGAAAACAACTTAT+AGG - Chr5:94704796-94704815 MsG0580029283.01.T01:intron 25.0%
! ATCAATGAAAAAGTGAATTC+TGG + Chr5:94705092-94705111 None:intergenic 25.0%
! ATTAAGCTGTTTATTCAAAC+AGG - Chr5:94704872-94704891 MsG0580029283.01.T01:intron 25.0%
! ATTAATGGGATGTTAACATT+AGG - Chr5:94705578-94705597 MsG0580029283.01.T01:intron 25.0%
! CAATTACATAAGCTTGTATA+TGG - Chr5:94704105-94704124 MsG0580029283.01.T01:intron 25.0%
! CTCTATAAAGAAAAGCTATT+AGG - Chr5:94704597-94704616 MsG0580029283.01.T01:intron 25.0%
! CTTTAATAATCTATATCAGG+AGG - Chr5:94705467-94705486 MsG0580029283.01.T01:CDS 25.0%
! GTACAAGTTTATGTAATTCA+TGG + Chr5:94704953-94704972 None:intergenic 25.0%
! TAAAGTCTACAGAAATGAAT+TGG - Chr5:94705982-94706001 MsG0580029283.01.T01:CDS 25.0%
! TATCAAAAGCTTCATACATA+TGG + Chr5:94706122-94706141 None:intergenic 25.0%
! TTAAGCTGTTTATTCAAACA+GGG - Chr5:94704873-94704892 MsG0580029283.01.T01:intron 25.0%
! TTATTAAGCGAAGAGATAAA+TGG - Chr5:94707218-94707237 MsG0580029283.01.T01:intron 25.0%
! TTCTTTCAAAAAAGGAATAC+AGG + Chr5:94706517-94706536 None:intergenic 25.0%
!! CTTAATTTCATTTTGAACAC+TGG - Chr5:94706571-94706590 MsG0580029283.01.T01:intron 25.0%
!! GACCTTATGAATATTTTCAT+TGG + Chr5:94705306-94705325 None:intergenic 25.0%
!! TGGAATGTTATTTATATGAC+TGG + Chr5:94706369-94706388 None:intergenic 25.0%
!! TGTTATTTATATGACTGGAT+TGG + Chr5:94706364-94706383 None:intergenic 25.0%
!!! AAAGCATTTAGTATCCATTT+TGG - Chr5:94705546-94705565 MsG0580029283.01.T01:intron 25.0%
!!! AGTCACTTTCTTTGTTTTAA+TGG + Chr5:94706715-94706734 None:intergenic 25.0%
!!! CATTTTTGAAGTGTTTGTTT+TGG - Chr5:94704543-94704562 MsG0580029283.01.T01:CDS 25.0%
!!! GTCACTTTCTTTGTTTTAAT+GGG + Chr5:94706714-94706733 None:intergenic 25.0%
!!! TATTTTGGTGTGCATAATTA+GGG - Chr5:94707359-94707378 MsG0580029283.01.T01:CDS 25.0%
!!! TGGAAAGTGTTTTTAGTTTT+AGG - Chr5:94704125-94704144 MsG0580029283.01.T01:intron 25.0%
!!! TTATTTTGGTGTGCATAATT+AGG - Chr5:94707358-94707377 MsG0580029283.01.T01:CDS 25.0%
!!! TTGAGTTGAATAAGAGAATT+CGG - Chr5:94706739-94706758 MsG0580029283.01.T01:intron 25.0%
!!! TTTTCAATTTTCAGGAACAA+GGG + Chr5:94703827-94703846 None:intergenic 25.0%
!!! TTTTTCAATTTTCAGGAACA+AGG + Chr5:94703828-94703847 None:intergenic 25.0%
!!! TTTTTCGAAGACAAATCAAA+AGG - Chr5:94704010-94704029 MsG0580029283.01.T01:intron 25.0%
AAACGCAATTGTTGTAGAAA+TGG + Chr5:94707143-94707162 None:intergenic 30.0%
AAATACGTCAGAATCTAACA+CGG + Chr5:94705496-94705515 None:intergenic 30.0%
AAATCGAAAAGTTCAAGGAA+GGG - Chr5:94703872-94703891 MsG0580029283.01.T01:CDS 30.0%
AACTAATGGGAATAAGATCA+AGG + Chr5:94704767-94704786 None:intergenic 30.0%
AAGCTATCTTAGAGAACTAA+TGG + Chr5:94704781-94704800 None:intergenic 30.0%
AATGTGCAGCAACAATAAAA+TGG + Chr5:94705701-94705720 None:intergenic 30.0%
ACATAAACTTGTACGAGAAA+TGG - Chr5:94704959-94704978 MsG0580029283.01.T01:intron 30.0%
ACCAATTCCATTATTGTAAC+AGG - Chr5:94707171-94707190 MsG0580029283.01.T01:intron 30.0%
ACTAATGGGAATAAGATCAA+GGG + Chr5:94704766-94704785 None:intergenic 30.0%
AGCTATCTTAGAGAACTAAT+GGG + Chr5:94704780-94704799 None:intergenic 30.0%
ATCAGATGTTTAGACATTAC+TGG + Chr5:94706658-94706677 None:intergenic 30.0%
ATCTTCATGCTTAATTTCCT+CGG + Chr5:94706947-94706966 None:intergenic 30.0%
ATTCTGACGTATTTGATATG+TGG - Chr5:94705502-94705521 MsG0580029283.01.T01:intron 30.0%
CACTTCAAAAATGACAAAAG+TGG + Chr5:94704536-94704555 None:intergenic 30.0%
CATTAACACAGGTATGATAA+GGG + Chr5:94707076-94707095 None:intergenic 30.0%
CGCCAATGAAAATATTCATA+AGG - Chr5:94705301-94705320 MsG0580029283.01.T01:CDS 30.0%
CTTATCATACCTGTGTTAAT+GGG - Chr5:94707075-94707094 MsG0580029283.01.T01:intron 30.0%
GTTTGCGATGAAAAGAAAAA+AGG + Chr5:94705416-94705435 None:intergenic 30.0%
TAAAGAAACATGCGAAAAAC+CGG - Chr5:94705255-94705274 MsG0580029283.01.T01:CDS 30.0%
TCAGATGTTTAGACATTACT+GGG + Chr5:94706657-94706676 None:intergenic 30.0%
TCGCTTAATAAAACTTGAAC+AGG + Chr5:94707209-94707228 None:intergenic 30.0%
TCTAATAAGCCAATCCAAAT+AGG + Chr5:94704362-94704381 None:intergenic 30.0%
TGTTTGAATCACTATTTGAC+AGG - Chr5:94706688-94706707 MsG0580029283.01.T01:intron 30.0%
TTATGCACACCAAAATAAGT+AGG + Chr5:94707356-94707375 None:intergenic 30.0%
TTCTGACGTATTTGATATGT+GGG - Chr5:94705503-94705522 MsG0580029283.01.T01:intron 30.0%
! ACCTGTTACAATAATGGAAT+TGG + Chr5:94707175-94707194 None:intergenic 30.0%
! ATAAAAGCATAGAGAAGAGA+GGG - Chr5:94707408-94707427 MsG0580029283.01.T01:exon 30.0%
! ATTTGGATTTTGGACAGAAT+GGG - Chr5:94705381-94705400 MsG0580029283.01.T01:intron 30.0%
! TATAAAAGCATAGAGAAGAG+AGG - Chr5:94707407-94707426 MsG0580029283.01.T01:exon 30.0%
! TATTTGGATTTTGGACAGAA+TGG - Chr5:94705380-94705399 MsG0580029283.01.T01:intron 30.0%
! TGGCAAACATATTTGGATTT+TGG - Chr5:94705371-94705390 MsG0580029283.01.T01:intron 30.0%
! TTTATACCGATCCTTTAGAA+GGG + Chr5:94707393-94707412 None:intergenic 30.0%
! TTTTATACCGATCCTTTAGA+AGG + Chr5:94707394-94707413 None:intergenic 30.0%
!! AGATGATTTTTAAGCATCTC+TGG - Chr5:94706892-94706911 MsG0580029283.01.T01:intron 30.0%
!! TGTTTCTTTAGAGTAGATGA+AGG + Chr5:94705245-94705264 None:intergenic 30.0%
!!! ATTCTGTAACCTTGCTTTTT+TGG - Chr5:94706178-94706197 MsG0580029283.01.T01:intron 30.0%
!!! TTCACTTTTTCATTGATCCT+TGG - Chr5:94705095-94705114 MsG0580029283.01.T01:intron 30.0%
!!! TTTATTTTATGGAGACCACA+TGG - Chr5:94706491-94706510 MsG0580029283.01.T01:intron 30.0%
AAAAATCCAGAAGACATCTG+AGG - Chr5:94706971-94706990 MsG0580029283.01.T01:intron 35.0%
AACAATATCTCTAACAGCAG+AGG + Chr5:94705877-94705896 None:intergenic 35.0%
AAGTACCTGTGAGATTGATT+GGG - Chr5:94704398-94704417 MsG0580029283.01.T01:intron 35.0%
AAGTGTCTACCTTAAGCTTT+CGG + Chr5:94707250-94707269 None:intergenic 35.0%
AATAAAACTTGAACAGGAGC+AGG + Chr5:94707203-94707222 None:intergenic 35.0%
AATCGAAAAGTTCAAGGAAG+GGG - Chr5:94703873-94703892 MsG0580029283.01.T01:CDS 35.0%
ACTTACACATAGAGCCTATT+TGG - Chr5:94704345-94704364 MsG0580029283.01.T01:intron 35.0%
AGGCAACAAGAAAGTGAAAA+AGG - Chr5:94705633-94705652 MsG0580029283.01.T01:intron 35.0%
ATCCAAACTGTCTCATTATG+TGG - Chr5:94704898-94704917 MsG0580029283.01.T01:intron 35.0%
CAGCAACAATAAAATGGAAG+AGG + Chr5:94705695-94705714 None:intergenic 35.0%
CCACATCAAGAAAATACATC+TGG + Chr5:94706204-94706223 None:intergenic 35.0%
CCATTAACACAGGTATGATA+AGG + Chr5:94707077-94707096 None:intergenic 35.0%
CCTTATCATACCTGTGTTAA+TGG - Chr5:94707074-94707093 MsG0580029283.01.T01:intron 35.0%
GAAAGTAATCACGAAGATGA+TGG - Chr5:94706241-94706260 MsG0580029283.01.T01:intron 35.0%
GAAATCGAAAAGTTCAAGGA+AGG - Chr5:94703871-94703890 MsG0580029283.01.T01:CDS 35.0%
GCTGAAACCTGTTACAATAA+TGG + Chr5:94707181-94707200 None:intergenic 35.0%
GGAAATTAAGCATGAAGATG+AGG - Chr5:94706948-94706967 MsG0580029283.01.T01:intron 35.0%
GGAAGAAATCGAAAAGTTCA+AGG - Chr5:94703867-94703886 MsG0580029283.01.T01:CDS 35.0%
TAAAATGGAAGAGGAAACAC+TGG + Chr5:94705686-94705705 None:intergenic 35.0%
TAAGTACCTGTGAGATTGAT+TGG - Chr5:94704397-94704416 MsG0580029283.01.T01:intron 35.0%
TACCACATAATGAGACAGTT+TGG + Chr5:94704903-94704922 None:intergenic 35.0%
TCAACAAAAGATGCTCTTTC+TGG - Chr5:94703953-94703972 MsG0580029283.01.T01:intron 35.0%
TCTGACGTATTTGATATGTG+GGG - Chr5:94705504-94705523 MsG0580029283.01.T01:intron 35.0%
TGCTAAACAAGAGAGGTTAA+AGG - Chr5:94707002-94707021 MsG0580029283.01.T01:intron 35.0%
TGCTTAGTGGCAAACATATT+TGG - Chr5:94705364-94705383 MsG0580029283.01.T01:intron 35.0%
TTATACATGAAAGCTTGAGC+AGG + Chr5:94706399-94706418 None:intergenic 35.0%
TTCGAAAAAGAGAGAATCAC+TGG + Chr5:94703999-94704018 None:intergenic 35.0%
TTTGATATGTGGGGTGATAA+AGG - Chr5:94705513-94705532 MsG0580029283.01.T01:intron 35.0%
! CCAGATGTATTTTCTTGATG+TGG - Chr5:94706201-94706220 MsG0580029283.01.T01:intron 35.0%
! GAAAGTCATCAGGTAGTTTT+TGG - Chr5:94705837-94705856 MsG0580029283.01.T01:intron 35.0%
! TATGATAAGGGAAGCACAAA+AGG + Chr5:94707064-94707083 None:intergenic 35.0%
! TGTTAATGGGTGCAATTGTT+TGG - Chr5:94707088-94707107 MsG0580029283.01.T01:intron 35.0%
! TTCATTGGCGACTAAACTTT+TGG + Chr5:94705291-94705310 None:intergenic 35.0%
! TTTGGATTTTGGACAGAATG+GGG - Chr5:94705382-94705401 MsG0580029283.01.T01:intron 35.0%
!! ACTGGATTGGTAATGTAAAC+TGG + Chr5:94706351-94706370 None:intergenic 35.0%
!! CTAGTATGTGGTTGATTTGT+TGG - Chr5:94705033-94705052 MsG0580029283.01.T01:CDS 35.0%
!! TGCATGTTGATAGCTAATGA+AGG - Chr5:94706439-94706458 MsG0580029283.01.T01:intron 35.0%
!! TTATCTGCGTTTCTAGTATG+TGG - Chr5:94705021-94705040 MsG0580029283.01.T01:CDS 35.0%
!! TTGGTTGTAGAGTACTGTAT+TGG - Chr5:94705052-94705071 MsG0580029283.01.T01:CDS 35.0%
!!! TTAAGCATCTCTGGTTCTTT+TGG - Chr5:94706901-94706920 MsG0580029283.01.T01:intron 35.0%
AAAAAGGAATACAGGCCATG+TGG + Chr5:94706509-94706528 None:intergenic 40.0%
AAGCTTGAGCAGGAAAGAAA+TGG + Chr5:94706389-94706408 None:intergenic 40.0%
ACAAAAGATGCTCTTTCTGG+TGG - Chr5:94703956-94703975 MsG0580029283.01.T01:intron 40.0%
ACAATTGCACCCATTAACAC+AGG + Chr5:94707087-94707106 None:intergenic 40.0%
ACCTGATGACTTTCATGTGT+GGG + Chr5:94705831-94705850 None:intergenic 40.0%
AGCAAGGTTACAGAATTAGC+AGG + Chr5:94706174-94706193 None:intergenic 40.0%
ATTCTCCCAATCAATCTCAC+AGG + Chr5:94704406-94704425 None:intergenic 40.0%
CACATAGAGCCTATTTGGAT+TGG - Chr5:94704350-94704369 MsG0580029283.01.T01:intron 40.0%
GACAAGTTGCTAAACAAGAG+AGG - Chr5:94706995-94707014 MsG0580029283.01.T01:intron 40.0%
TACATCTGGCCAAAAAAGCA+AGG + Chr5:94706190-94706209 None:intergenic 40.0%
TACATTAGCTACTGCTGTTG+CGG - Chr5:94705949-94705968 MsG0580029283.01.T01:intron 40.0%
TACCTGATGACTTTCATGTG+TGG + Chr5:94705832-94705851 None:intergenic 40.0%
TTTGATGTGGCTAGATCTTG+CGG - Chr5:94705136-94705155 MsG0580029283.01.T01:intron 40.0%
! AACTTTTGGACACCACTTTC+CGG + Chr5:94705277-94705296 None:intergenic 40.0%
! TAAACCAACCTGTTTCTCCT+GGG + Chr5:94707449-94707468 None:intergenic 40.0%
! TTAAACCAACCTGTTTCTCC+TGG + Chr5:94707450-94707469 None:intergenic 40.0%
! TTGGATTTTGGACAGAATGG+GGG - Chr5:94705383-94705402 MsG0580029283.01.T01:intron 40.0%
! TTTAGAGTAGATGAAGGCAC+TGG + Chr5:94705239-94705258 None:intergenic 40.0%
AAATGAATTGGGCCCTGAAC+CGG - Chr5:94705994-94706013 MsG0580029283.01.T01:CDS 45.0%
AAGCATAGAGAAGAGAGGGT+TGG - Chr5:94707412-94707431 MsG0580029283.01.T01:exon 45.0%
ACATGCGAAAAACCGGAAAG+TGG - Chr5:94705262-94705281 MsG0580029283.01.T01:CDS 45.0%
AGAGAGAGAGAGAGAGATGA+GGG + Chr5:94706857-94706876 None:intergenic 45.0%
AGGTACACGTTATTGCAGAG+CGG - Chr5:94705653-94705672 MsG0580029283.01.T01:intron 45.0%
CAGCAGTAGCTAATGTATCC+TGG + Chr5:94705946-94705965 None:intergenic 45.0%
CAGCATCTCAAAAATTGCCG+AGG - Chr5:94706927-94706946 MsG0580029283.01.T01:intron 45.0%
GGATTAAATGAGCATCCTGG+AGG + Chr5:94705810-94705829 None:intergenic 45.0%
GTCTACCTTAAGCTTTCGGA+TGG + Chr5:94707246-94707265 None:intergenic 45.0%
GTGGGATTAAATGAGCATCC+TGG + Chr5:94705813-94705832 None:intergenic 45.0%
TACTCATATTCCAGCTGTCG+AGG - Chr5:94705779-94705798 MsG0580029283.01.T01:intron 45.0%
TACTTGTGCTTTCCTAAGCG+AGG + Chr5:94707036-94707055 None:intergenic 45.0%
TCAGAAATAGCTTCTCCAGC+AGG + Chr5:94706034-94706053 None:intergenic 45.0%
TCCCACACATGAAAGTCATC+AGG - Chr5:94705827-94705846 MsG0580029283.01.T01:intron 45.0%
TCGACAGCTGGAATATGAGT+AGG + Chr5:94705780-94705799 None:intergenic 45.0%
TCTCCAGCAGGAACAGTTAA+AGG + Chr5:94706022-94706041 None:intergenic 45.0%
TGGATCCATCCGAAAGCTTA+AGG - Chr5:94707238-94707257 MsG0580029283.01.T01:intron 45.0%
TGTCATGCAAACGCAGATGA+AGG - Chr5:94705613-94705632 MsG0580029283.01.T01:intron 45.0%
! GTTGCACCCTTCTAAAGGAT+CGG - Chr5:94707384-94707403 MsG0580029283.01.T01:CDS 45.0%
!! AAGGCACTGGCTTAACAAAC+TGG + Chr5:94705226-94705245 None:intergenic 45.0%
!! CAAAATAAATAAATAAAAAT+GGG + Chr5:94704042-94704061 None:intergenic 5.0%
AAAGCCCAGGAGAAACAGGT+TGG - Chr5:94707442-94707461 MsG0580029283.01.T01:five_prime_UTR 50.0%
CAAGGAAGGGGAAGAAAGCA+TGG - Chr5:94703885-94703904 MsG0580029283.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGATG+AGG + Chr5:94706858-94706877 None:intergenic 50.0%
GATGAGGGAGGATGAGAGAA+TGG + Chr5:94706842-94706861 None:intergenic 50.0%
GGGTTGTTGCACCCTTCTAA+AGG - Chr5:94707379-94707398 MsG0580029283.01.T01:CDS 50.0%
GTGCCTTTAACTGTTCCTGC+TGG - Chr5:94706016-94706035 MsG0580029283.01.T01:CDS 50.0%
TTCCAAAGCCCAGGAGAAAC+AGG - Chr5:94707438-94707457 MsG0580029283.01.T01:five_prime_UTR 50.0%
TTGTCGCCTCAGATGTCTTC+TGG + Chr5:94706980-94706999 None:intergenic 50.0%
TTGTGCTTTCCTAAGCGAGG+AGG + Chr5:94707033-94707052 None:intergenic 50.0%
! AACCTGTTTCTCCTGGGCTT+TGG + Chr5:94707443-94707462 None:intergenic 50.0%
! GCAGGAACAGTTAAAGGCAC+CGG + Chr5:94706016-94706035 None:intergenic 50.0%
!! ACAGTTAAAGGCACCGGTTC+AGG + Chr5:94706010-94706029 None:intergenic 50.0%
!! CAGTTAAAGGCACCGGTTCA+GGG + Chr5:94706009-94706028 None:intergenic 50.0%
AAGGCATGTCCTCCTCGCTT+AGG - Chr5:94707021-94707040 MsG0580029283.01.T01:intron 55.0%
GAGAGAGAGAGAGATGAGGG+AGG + Chr5:94706854-94706873 None:intergenic 55.0%
! GGTTGGTTGTTCCAAAGCCC+AGG - Chr5:94707429-94707448 MsG0580029283.01.T01:five_prime_UTR 55.0%
GGAGGATCAACCTCGACAGC+TGG + Chr5:94705792-94705811 None:intergenic 60.0%
! GCTGTCGAGGTTGATCCTCC+AGG - Chr5:94705792-94705811 MsG0580029283.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 94703811 94707469 94703811 ID=MsG0580029283.01;Name=MsG0580029283.01
Chr5 mRNA 94703811 94707469 94703811 ID=MsG0580029283.01.T01;Parent=MsG0580029283.01;Name=MsG0580029283.01.T01;_AED=0.38;_eAED=0.38;_QI=52|0.9|0.81|1|1|1|11|0|366
Chr5 exon 94703811 94703900 94703811 ID=MsG0580029283.01.T01:exon:49952;Parent=MsG0580029283.01.T01
Chr5 exon 94704021 94704087 94704021 ID=MsG0580029283.01.T01:exon:49951;Parent=MsG0580029283.01.T01
Chr5 exon 94704228 94704350 94704228 ID=MsG0580029283.01.T01:exon:49950;Parent=MsG0580029283.01.T01
Chr5 exon 94704451 94704570 94704451 ID=MsG0580029283.01.T01:exon:49949;Parent=MsG0580029283.01.T01
Chr5 exon 94704987 94705075 94704987 ID=MsG0580029283.01.T01:exon:49948;Parent=MsG0580029283.01.T01
Chr5 exon 94705220 94705333 94705220 ID=MsG0580029283.01.T01:exon:49947;Parent=MsG0580029283.01.T01
Chr5 exon 94705432 94705512 94705432 ID=MsG0580029283.01.T01:exon:49946;Parent=MsG0580029283.01.T01
Chr5 exon 94705626 94705651 94705626 ID=MsG0580029283.01.T01:exon:49945;Parent=MsG0580029283.01.T01
Chr5 exon 94705746 94705794 94705746 ID=MsG0580029283.01.T01:exon:49944;Parent=MsG0580029283.01.T01
Chr5 exon 94705958 94706130 94705958 ID=MsG0580029283.01.T01:exon:49943;Parent=MsG0580029283.01.T01
Chr5 exon 94707249 94707469 94707249 ID=MsG0580029283.01.T01:exon:49942;Parent=MsG0580029283.01.T01
Chr5 five_prime_UTR 94707418 94707469 94707418 ID=MsG0580029283.01.T01:five_prime_utr;Parent=MsG0580029283.01.T01
Chr5 CDS 94707249 94707417 94707249 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94705958 94706130 94705958 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94705746 94705794 94705746 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94705626 94705651 94705626 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94705432 94705512 94705432 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94705220 94705333 94705220 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94704987 94705075 94704987 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94704451 94704570 94704451 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94704228 94704350 94704228 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94704021 94704087 94704021 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Chr5 CDS 94703811 94703900 94703811 ID=MsG0580029283.01.T01:cds;Parent=MsG0580029283.01.T01
Gene Sequence

>MsG0580029283.01.T01

ATGGGGAAGAAATCGAAAAGTTCAAGGAAGGGGAAGAAAGCATGGAGAGCTAACATAAGCACAGAAGAAATCGAAGATTTCTTTGAGAAATCAACAAAAGATGCTCTTTCTGGTGGTTCTCTTCAAGCTGTTTCCAGTGATTCTCTCTTTTTCGAAGACAAATCAAAAGATCTTGCGGTAAAGAAGAAGATCGAAAAACATAGAGAAAAAGTGCTTCATGTTGATAGCATACTACAAAAAAACCAGTTTGTTAAGCCAGTGCCTTCATCTACTCTAAAGAAACATGCGAAAAACCGGAAAGTGGTGTCCAAAAGTTTAGTCGCCAATGAAAATATTCATAAGGAGGGTTCCGTGTTAGATTCTGACGTATTTGATATGTGGGGTGATAAAGATGAAGGCAACAAGAAAGTGAAAAAGTTGTGCAAGCCTACTCATATTCCAGCTGTCGAGGTTGATCCTCCAGGATGCTCATTTAATCCCACACATGAAAGTCATCAGGATACATTAGCTACTGCTGTTGCGGAAGAAATGATTAAAGTCTACAGAAATGAATTGGGCCCTGAACCGGTGCCTTTAACTGTTCCTGCTGGAGAAGCTATTTCTGAAGAAGATATGTATTTTCTTGATGTGGAGAAGAGTGACGATGATGAAAGTAATCACGAAGATGATGGTGAAAATGAAGACGATGCGTCAGAGAAAAAGCCCATTAAAACAAAGAAAGTGACTAGAGTTGAGTTGAATAAGAGAATTCGGCGCAGAGAACAATTGAAAAAAGAAGCTGAATCAAAGAAGAAGAAGAATTTCTCAAAAGAAATTGATAGCATCTCAAAAATTGCCGAGGAAATTAAGCATGAAGATGAGGAAAAATCCAGAAGACATCTGAGGCGACAAGTTGCTAAACAAGAGAGGTTAAAGGCATGTCCTCCTCGCTTAGGAAAGCACAAGTTTCAGCCTGCTCCTGTTCAAGTTTTATTAAGCGAAGAGATAAATGGATCCATCCGAAAGCTTAAGGGTTGTTGCACCCTTCTAAAGGATCGGTATAAAAGCATAGAGAAGAGAGGGTTGGTTGTTCCAAAGCCCAGGAGAAACAGGTTGGTTTAA

Protein sequence

>MsG0580029283.01.T01

MGKKSKSSRKGKKAWRANISTEEIEDFFEKSTKDALSGGSLQAVSSDSLFFEDKSKDLAVKKKIEKHREKVLHVDSILQKNQFVKPVPSSTLKKHAKNRKVVSKSLVANENIHKEGSVLDSDVFDMWGDKDEGNKKVKKLCKPTHIPAVEVDPPGCSFNPTHESHQDTLATAVAEEMIKVYRNELGPEPVPLTVPAGEAISEEDMYFLDVEKSDDDESNHEDDGENEDDASEKKPIKTKKVTRVELNKRIRRREQLKKEAESKKKKNFSKEIDSISKIAEEIKHEDEEKSRRHLRRQVAKQERLKACPPRLGKHKFQPAPVQVLLSEEINGSIRKLKGCCTLLKDRYKSIEKRGLVVPKPRRNRLV*