AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043116.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043116.01.T01 MTR_8g028640 85.890 489 37 5 1 460 1 486 0.0 634
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043116.01.T01 AT4G02720 82.895 152 22 2 307 455 264 414 4.65e-80 254

Find 121 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCGTTGAAGCACTGTATT+TGG 0.183408 8:-19275908 MsG0880043116.01.T01:CDS
AACGATGATTTAGAAGATTA+TGG 0.235360 8:-19275855 MsG0880043116.01.T01:CDS
ATTATGAAGAGAAGGCTAAA+AGG 0.253662 8:-19274954 MsG0880043116.01.T01:CDS
GAATGAATGCAATTCGTATT+AGG 0.315512 8:-19275029 MsG0880043116.01.T01:CDS
GGTCCAACTCATGATCCTTT+TGG 0.336959 8:-19274868 MsG0880043116.01.T01:CDS
TATCGTGGTGTCTAGGGTTT+CGG 0.364175 8:+19276024 None:intergenic
GAAAGAGGAGGAAGAGTAGT+AGG 0.367987 8:-19275560 MsG0880043116.01.T01:CDS
TCAGCTCTTGGAAGCGGCAT+TGG 0.368096 8:+19275222 None:intergenic
TCCTCCGAAGCCTCGCTAAC+CGG 0.389555 8:+19275408 None:intergenic
CTGAATCAGAAGAGGAAGAT+AGG 0.389770 8:-19275668 MsG0880043116.01.T01:CDS
AAATCATCGTTCTCGCGTCT+TGG 0.390861 8:+19275867 None:intergenic
TTTCCGTTATCGTGGTGTCT+AGG 0.392103 8:+19276017 None:intergenic
CGGAGTCAGGTGTGCGGCGG+CGG 0.407742 8:+19276150 None:intergenic
GAAGGCTAAAAGGGAGCATA+AGG 0.408568 8:-19274944 MsG0880043116.01.T01:CDS
TGAGAAAATTGATGTGAAGA+AGG 0.409970 8:-19275814 MsG0880043116.01.T01:CDS
AATTGAGTTGGGTTCTGATT+CGG 0.410027 8:-19275385 MsG0880043116.01.T01:CDS
CGGCTTGTGCAGCGTCATAT+TGG 0.412941 8:-19274904 MsG0880043116.01.T01:CDS
GTCACAGAAGAAACCGGCTT+TGG 0.420176 8:-19275268 MsG0880043116.01.T01:CDS
CTTATATGCCCCTCAGCTCT+TGG 0.426142 8:+19275210 None:intergenic
AGAGGAGATTTCGAAGTTTG+AGG 0.427647 8:-19275088 MsG0880043116.01.T01:CDS
ATTTCGAAGTTTGAGGAACT+TGG 0.429880 8:-19275081 MsG0880043116.01.T01:CDS
ATCTCAAACGGGTAACGAAT+CGG 0.433438 8:-19275982 MsG0880043116.01.T01:CDS
ATAGGAAGAGGAGGAAGAGT+AGG 0.443200 8:-19275650 MsG0880043116.01.T01:CDS
ATACTGAACGGCGACGGTGG+CGG 0.443350 8:+19276057 None:intergenic
TGCTGAAGATAAGCGTGCTT+TGG 0.444395 8:-19274986 MsG0880043116.01.T01:CDS
TCATCGTTCTCGCGTCTTGG+AGG 0.444995 8:+19275870 None:intergenic
AACCCTAGACACCACGATAA+CGG 0.451919 8:-19276020 MsG0880043116.01.T01:CDS
CACGATAACGGAAATTCAAA+CGG 0.453757 8:-19276008 MsG0880043116.01.T01:CDS
TAAAAGGGAGCATAAGGTTA+TGG 0.454765 8:-19274938 MsG0880043116.01.T01:CDS
TTCCGTTATCGTGGTGTCTA+GGG 0.458681 8:+19276018 None:intergenic
CAAGAAGAAAAGTTCTGAAC+CGG 0.463458 8:-19275427 MsG0880043116.01.T01:CDS
TGAACCGGTTAGCGAGGCTT+CGG 0.464599 8:-19275412 MsG0880043116.01.T01:CDS
CTATGGTGGTGCACTTAGGC+CGG 0.465336 8:-19275187 MsG0880043116.01.T01:CDS
GTTTGAGTCACAGAAGAAAC+CGG 0.471304 8:-19275274 MsG0880043116.01.T01:CDS
TTCTCGCGTCTTGGAGGACT+CGG 0.473208 8:+19275876 None:intergenic
AGCAAAATCTGAGTCTGAAT+CGG 0.473595 8:-19275772 MsG0880043116.01.T01:CDS
GGAAGCGGCATTGGCCCAAC+CGG 0.475959 8:+19275231 None:intergenic
AATTGATGTGAAGAAGGATA+AGG 0.477699 8:-19275808 MsG0880043116.01.T01:CDS
GCTTCGGAGGAAATTGAGTT+GGG 0.479948 8:-19275396 MsG0880043116.01.T01:CDS
TTATGAAGAGAAGGCTAAAA+GGG 0.480058 8:-19274953 MsG0880043116.01.T01:CDS
TTCAAACGGGAAATCTCAAA+CGG 0.484673 8:-19275994 MsG0880043116.01.T01:CDS
GGCTTCGGAGGAAATTGAGT+TGG 0.486720 8:-19275397 MsG0880043116.01.T01:CDS
GGAATCTAAAGAATCTGAAT+CGG 0.492329 8:-19275748 MsG0880043116.01.T01:CDS
CTGATGATGGTTTAAGAAAG+AGG 0.500563 8:-19275476 MsG0880043116.01.T01:CDS
CAGAAGAGGAAGATAGGAAG+AGG 0.501143 8:-19275662 MsG0880043116.01.T01:CDS
TGCTGAGGCTTTGAAGTTGA+AGG 0.503552 8:-19275301 MsG0880043116.01.T01:CDS
TGTGTCTGTAGCGTTGGTGA+GGG 0.504385 8:+19276177 None:intergenic
TCGTTGGAGACATCGGAGTC+AGG 0.508578 8:+19276137 None:intergenic
GAAGGAAGAGTAGTAGAAAG+AGG 0.517669 8:-19275575 MsG0880043116.01.T01:CDS
CATATTGGTGGTCAGGATGT+TGG 0.525252 8:-19274889 MsG0880043116.01.T01:CDS
GCAGCGTCATATTGGTGGTC+AGG 0.526877 8:-19274896 MsG0880043116.01.T01:CDS
GCACCAAAAGGATCATGAGT+TGG 0.527290 8:+19274865 None:intergenic
ACGATAACGGAAATTCAAAC+GGG 0.527484 8:-19276007 MsG0880043116.01.T01:CDS
ATGATGAAGAACCACCGGTT+GGG 0.528395 8:-19275245 MsG0880043116.01.T01:CDS
TCGTCGTAGGAATCGTAGCT+AGG 0.529874 8:+19276092 None:intergenic
TCGTATTAGGAAAGAAAACC+AGG 0.532173 8:-19275016 MsG0880043116.01.T01:CDS
AGACCCACTTCTCCTCTCCT+AGG 0.534139 8:+19275117 None:intergenic
GGTCGTTGTGTCTGTAGCGT+TGG 0.534520 8:+19276171 None:intergenic
TTGGTGAGGGGTTTCGATTG+TGG 0.534892 8:+19276190 None:intergenic
ACGGTAGCGAGGGCGATCGT+TGG 0.535819 8:+19276121 None:intergenic
AAGAATCTGAATCGGAATTG+AGG 0.537137 8:-19275740 MsG0880043116.01.T01:CDS
AAGAGGAAGATAGGAAGAGG+AGG 0.539501 8:-19275659 MsG0880043116.01.T01:CDS
GGTGCACTTAGGCCGGGTGA+AGG 0.539632 8:-19275180 MsG0880043116.01.T01:CDS
GTGAGGGGTTTCGATTGTGG+AGG 0.541338 8:+19276193 None:intergenic
TATCTTCAGCACTATAAACC+TGG 0.541478 8:+19274998 None:intergenic
GGTTCTTCATCATCCAAAGC+CGG 0.544025 8:+19275255 None:intergenic
TATGTTTAATTATGAAGAGA+AGG 0.544835 8:-19274962 MsG0880043116.01.T01:CDS
AACAAGGGAAACGTATTCCT+AGG 0.546038 8:-19275134 MsG0880043116.01.T01:CDS
AGCGGCATTGGCCCAACCGG+TGG 0.547670 8:+19275234 None:intergenic
AGAGTAGTAGGAAGAAGAGA+AGG 0.547974 8:-19275548 MsG0880043116.01.T01:CDS
TGCCCCTCAGCTCTTGGAAG+CGG 0.548230 8:+19275216 None:intergenic
TCTGAATCTGACTCTGATGA+TGG 0.548510 8:-19275489 MsG0880043116.01.T01:CDS
TCAAACGGGAAATCTCAAAC+GGG 0.551965 8:-19275993 MsG0880043116.01.T01:CDS
TATGGTGGTGCACTTAGGCC+GGG 0.563708 8:-19275186 MsG0880043116.01.T01:CDS
ATCGAAAGAGGAGAAAGAGA+AGG 0.565595 8:-19275593 MsG0880043116.01.T01:CDS
CTTGTGCAGCGTCATATTGG+TGG 0.565733 8:-19274901 MsG0880043116.01.T01:CDS
TTGTGTCTGTAGCGTTGGTG+AGG 0.572578 8:+19276176 None:intergenic
GATGATGAAGAACCACCGGT+TGG 0.574897 8:-19275246 MsG0880043116.01.T01:CDS
ATGCCGCTTCCAAGAGCTGA+GGG 0.575379 8:-19275219 MsG0880043116.01.T01:CDS
ATTCTGAAGAAGATCGAAAG+AGG 0.576154 8:-19275605 MsG0880043116.01.T01:CDS
GGGATACTGAACGGCGACGG+TGG 0.576670 8:+19276054 None:intergenic
AGAAGTGGGTCTTTCTGCAG+AGG 0.579975 8:-19275106 MsG0880043116.01.T01:CDS
ACCGGTTAGCGAGGCTTCGG+AGG 0.580060 8:-19275409 MsG0880043116.01.T01:CDS
TATTCCTAGGAGAGGAGAAG+TGG 0.585399 8:-19275121 MsG0880043116.01.T01:CDS
CGTCGTAGGAATCGTAGCTA+GGG 0.585453 8:+19276093 None:intergenic
GCTGAGGGGCATATAAGCTA+TGG 0.585758 8:-19275204 MsG0880043116.01.T01:CDS
TTTGGATGATGAAGAACCAC+CGG 0.585914 8:-19275250 MsG0880043116.01.T01:CDS
TAGTGAATCTGAATCAGAAG+AGG 0.587637 8:-19275676 MsG0880043116.01.T01:CDS
TAAGCTATGGTGGTGCACTT+AGG 0.587827 8:-19275191 MsG0880043116.01.T01:CDS
GTTATGTGATGAGTGGTAGC+AGG 0.592296 8:-19275059 MsG0880043116.01.T01:CDS
CGTTTGAATTTCCGTTATCG+TGG 0.593099 8:+19276009 None:intergenic
AATCGGAATTGAGGAAGAAG+AGG 0.595077 8:-19275731 MsG0880043116.01.T01:CDS
AGGGCGATCGTTGGAGACAT+CGG 0.596494 8:+19276130 None:intergenic
GAAAGAGGAAGCCATCGAGA+CGG 0.599226 8:-19275461 MsG0880043116.01.T01:CDS
AAGTTCTGAACCGGTTAGCG+AGG 0.600674 8:-19275418 MsG0880043116.01.T01:CDS
ATCGGAATTGAGGAAGAAGA+GGG 0.601205 8:-19275730 MsG0880043116.01.T01:CDS
TGACGTTGATGAGGAGAAGA+TGG 0.602289 8:-19275334 MsG0880043116.01.T01:CDS
AATGCCGCTTCCAAGAGCTG+AGG 0.605177 8:-19275220 MsG0880043116.01.T01:CDS
AATCGTAGCTAGGGCTACGA+CGG 0.610159 8:+19276102 None:intergenic
AAGAGTATCGCAGATTGAAG+AGG 0.610488 8:-19275944 MsG0880043116.01.T01:CDS
AAAATCTGAGTCTGAATCGG+AGG 0.611446 8:-19275769 MsG0880043116.01.T01:CDS
CTAGGGCTACGACGGTAGCG+AGG 0.611729 8:+19276110 None:intergenic
GTCTGTGTGACGATCGTCGT+AGG 0.619398 8:+19276079 None:intergenic
GGAAGAGTAGTAGAAAGAGG+AGG 0.622035 8:-19275572 MsG0880043116.01.T01:CDS
TAGGGCTACGACGGTAGCGA+GGG 0.629233 8:+19276111 None:intergenic
GATTGAAGAGGCAAAAGATG+AGG 0.629528 8:-19275932 MsG0880043116.01.T01:CDS
CATCGGAGTCAGGTGTGCGG+CGG 0.630078 8:+19276147 None:intergenic
TCGGAATTGAGGAAGAAGAG+GGG 0.641175 8:-19275729 MsG0880043116.01.T01:CDS
AGGTTATGGCTGATTTGCAG+CGG 0.641591 8:-19274924 MsG0880043116.01.T01:CDS
ATTGCGCAATATGTTCAACA+AGG 0.650007 8:-19275150 MsG0880043116.01.T01:CDS
GAGGGGCATATAAGCTATGG+TGG 0.653790 8:-19275201 MsG0880043116.01.T01:CDS
ATTCCTAGGAGAGGAGAAGT+GGG 0.661316 8:-19275120 MsG0880043116.01.T01:CDS
GTGTCTGTAGCGTTGGTGAG+GGG 0.662371 8:+19276178 None:intergenic
GAACTTGGTTATGTGATGAG+TGG 0.665709 8:-19275066 MsG0880043116.01.T01:CDS
GCAATAGCATCTCCTTCACC+CGG 0.667502 8:+19275168 None:intergenic
GGGAAACGTATTCCTAGGAG+AGG 0.668109 8:-19275129 MsG0880043116.01.T01:CDS
AGAAATTGATGACGTTGATG+AGG 0.669999 8:-19275343 MsG0880043116.01.T01:CDS
AGACATCGGAGTCAGGTGTG+CGG 0.688990 8:+19276144 None:intergenic
GATGGCTGAGATGAATGCTG+AGG 0.692306 8:-19275316 MsG0880043116.01.T01:CDS
TTGCGCAATATGTTCAACAA+GGG 0.696691 8:-19275149 MsG0880043116.01.T01:CDS
TGCCGCTTCCAAGAGCTGAG+GGG 0.711878 8:-19275218 MsG0880043116.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTTAATTATGAAGAGA+AGG - Chr8:19276090-19276109 MsG0880043116.01.T01:CDS 20.0%
!!! ATTTTCTCAAAAATTTCTTC+AGG + Chr8:19275227-19275246 None:intergenic 20.0%
! AACGATGATTTAGAAGATTA+TGG - Chr8:19275197-19275216 MsG0880043116.01.T01:CDS 25.0%
AATTGATGTGAAGAAGGATA+AGG - Chr8:19275244-19275263 MsG0880043116.01.T01:CDS 30.0%
ATTATGAAGAGAAGGCTAAA+AGG - Chr8:19276098-19276117 MsG0880043116.01.T01:CDS 30.0%
GAATGAATGCAATTCGTATT+AGG - Chr8:19276023-19276042 MsG0880043116.01.T01:CDS 30.0%
GGAATCTAAAGAATCTGAAT+CGG - Chr8:19275304-19275323 MsG0880043116.01.T01:CDS 30.0%
TGAGAAAATTGATGTGAAGA+AGG - Chr8:19275238-19275257 MsG0880043116.01.T01:CDS 30.0%
TTATGAAGAGAAGGCTAAAA+GGG - Chr8:19276099-19276118 MsG0880043116.01.T01:CDS 30.0%
AAGAATCTGAATCGGAATTG+AGG - Chr8:19275312-19275331 MsG0880043116.01.T01:CDS 35.0%
AGCAAAATCTGAGTCTGAAT+CGG - Chr8:19275280-19275299 MsG0880043116.01.T01:CDS 35.0%
ATTGCGCAATATGTTCAACA+AGG - Chr8:19275902-19275921 MsG0880043116.01.T01:CDS 35.0%
ATTTCGAAGTTTGAGGAACT+TGG - Chr8:19275971-19275990 MsG0880043116.01.T01:CDS 35.0%
TAGTGAATCTGAATCAGAAG+AGG - Chr8:19275376-19275395 MsG0880043116.01.T01:CDS 35.0%
TATCTTCAGCACTATAAACC+TGG + Chr8:19276057-19276076 None:intergenic 35.0%
TCGTATTAGGAAAGAAAACC+AGG - Chr8:19276036-19276055 MsG0880043116.01.T01:CDS 35.0%
TTCAAACGGGAAATCTCAAA+CGG - Chr8:19275058-19275077 MsG0880043116.01.T01:CDS 35.0%
TTGCGCAATATGTTCAACAA+GGG - Chr8:19275903-19275922 MsG0880043116.01.T01:CDS 35.0%
! ATTCTGAAGAAGATCGAAAG+AGG - Chr8:19275447-19275466 MsG0880043116.01.T01:CDS 35.0%
! TAAAAGGGAGCATAAGGTTA+TGG - Chr8:19276114-19276133 MsG0880043116.01.T01:CDS 35.0%
!! AATCGTTGAAGCACTGTATT+TGG - Chr8:19275144-19275163 MsG0880043116.01.T01:CDS 35.0%
!! AATTGAGTTGGGTTCTGATT+CGG - Chr8:19275667-19275686 MsG0880043116.01.T01:CDS 35.0%
!! ACGATAACGGAAATTCAAAC+GGG - Chr8:19275045-19275064 MsG0880043116.01.T01:CDS 35.0%
!! AGAAATTGATGACGTTGATG+AGG - Chr8:19275709-19275728 MsG0880043116.01.T01:CDS 35.0%
!! CAAGAAGAAAAGTTCTGAAC+CGG - Chr8:19275625-19275644 MsG0880043116.01.T01:CDS 35.0%
!! CACGATAACGGAAATTCAAA+CGG - Chr8:19275044-19275063 MsG0880043116.01.T01:CDS 35.0%
!! CTGATGATGGTTTAAGAAAG+AGG - Chr8:19275576-19275595 MsG0880043116.01.T01:CDS 35.0%
AAAATCTGAGTCTGAATCGG+AGG - Chr8:19275283-19275302 MsG0880043116.01.T01:CDS 40.0%
AACAAGGGAAACGTATTCCT+AGG - Chr8:19275918-19275937 MsG0880043116.01.T01:CDS 40.0%
AATCGGAATTGAGGAAGAAG+AGG - Chr8:19275321-19275340 MsG0880043116.01.T01:CDS 40.0%
AGAGGAGATTTCGAAGTTTG+AGG - Chr8:19275964-19275983 MsG0880043116.01.T01:CDS 40.0%
AGAGTAGTAGGAAGAAGAGA+AGG - Chr8:19275504-19275523 MsG0880043116.01.T01:CDS 40.0%
ATCGAAAGAGGAGAAAGAGA+AGG - Chr8:19275459-19275478 MsG0880043116.01.T01:CDS 40.0%
ATCGGAATTGAGGAAGAAGA+GGG - Chr8:19275322-19275341 MsG0880043116.01.T01:CDS 40.0%
ATCTCAAACGGGTAACGAAT+CGG - Chr8:19275070-19275089 MsG0880043116.01.T01:CDS 40.0%
CGTTTGAATTTCCGTTATCG+TGG + Chr8:19275046-19275065 None:intergenic 40.0%
CTGAATCAGAAGAGGAAGAT+AGG - Chr8:19275384-19275403 MsG0880043116.01.T01:CDS 40.0%
GAACTTGGTTATGTGATGAG+TGG - Chr8:19275986-19276005 MsG0880043116.01.T01:CDS 40.0%
GAAGGAAGAGTAGTAGAAAG+AGG - Chr8:19275477-19275496 MsG0880043116.01.T01:CDS 40.0%
GATTGAAGAGGCAAAAGATG+AGG - Chr8:19275120-19275139 MsG0880043116.01.T01:CDS 40.0%
GTTTGAGTCACAGAAGAAAC+CGG - Chr8:19275778-19275797 MsG0880043116.01.T01:CDS 40.0%
TCAAACGGGAAATCTCAAAC+GGG - Chr8:19275059-19275078 MsG0880043116.01.T01:CDS 40.0%
TCTGAATCTGACTCTGATGA+TGG - Chr8:19275563-19275582 MsG0880043116.01.T01:CDS 40.0%
TTTGGATGATGAAGAACCAC+CGG - Chr8:19275802-19275821 MsG0880043116.01.T01:CDS 40.0%
! GAACCATCTTTTGCACCAAA+AGG + Chr8:19276202-19276221 None:intergenic 40.0%
!! AAGAGTATCGCAGATTGAAG+AGG - Chr8:19275108-19275127 MsG0880043116.01.T01:CDS 40.0%
!! GATCCTTTTGGTGCAAAAGA+TGG - Chr8:19276196-19276215 MsG0880043116.01.T01:CDS 40.0%
AAATCATCGTTCTCGCGTCT+TGG + Chr8:19275188-19275207 None:intergenic 45.0%
AACCCTAGACACCACGATAA+CGG - Chr8:19275032-19275051 MsG0880043116.01.T01:CDS 45.0%
AAGAGGAAGATAGGAAGAGG+AGG - Chr8:19275393-19275412 MsG0880043116.01.T01:CDS 45.0%
ATAGGAAGAGGAGGAAGAGT+AGG - Chr8:19275402-19275421 MsG0880043116.01.T01:CDS 45.0%
ATTCCTAGGAGAGGAGAAGT+GGG - Chr8:19275932-19275951 MsG0880043116.01.T01:CDS 45.0%
CAGAAGAGGAAGATAGGAAG+AGG - Chr8:19275390-19275409 MsG0880043116.01.T01:CDS 45.0%
GAAAGAGGAGGAAGAGTAGT+AGG - Chr8:19275492-19275511 MsG0880043116.01.T01:CDS 45.0%
GCACCAAAAGGATCATGAGT+TGG + Chr8:19276190-19276209 None:intergenic 45.0%
GCTTCGGAGGAAATTGAGTT+GGG - Chr8:19275656-19275675 MsG0880043116.01.T01:CDS 45.0%
GGAAGAGTAGTAGAAAGAGG+AGG - Chr8:19275480-19275499 MsG0880043116.01.T01:CDS 45.0%
GGTTCTTCATCATCCAAAGC+CGG + Chr8:19275800-19275819 None:intergenic 45.0%
GTTATGTGATGAGTGGTAGC+AGG - Chr8:19275993-19276012 MsG0880043116.01.T01:CDS 45.0%
TATTCCTAGGAGAGGAGAAG+TGG - Chr8:19275931-19275950 MsG0880043116.01.T01:CDS 45.0%
TCGGAATTGAGGAAGAAGAG+GGG - Chr8:19275323-19275342 MsG0880043116.01.T01:CDS 45.0%
TGCTGAAGATAAGCGTGCTT+TGG - Chr8:19276066-19276085 MsG0880043116.01.T01:CDS 45.0%
TTCCGTTATCGTGGTGTCTA+GGG + Chr8:19275037-19275056 None:intergenic 45.0%
TTTCCGTTATCGTGGTGTCT+AGG + Chr8:19275038-19275057 None:intergenic 45.0%
! ATGATGAAGAACCACCGGTT+GGG - Chr8:19275807-19275826 MsG0880043116.01.T01:CDS 45.0%
! CATATTGGTGGTCAGGATGT+TGG - Chr8:19276163-19276182 MsG0880043116.01.T01:CDS 45.0%
! CTTTTTCTACTCCGTCTCGA+TGG + Chr8:19275605-19275624 None:intergenic 45.0%
! GAAGGCTAAAAGGGAGCATA+AGG - Chr8:19276108-19276127 MsG0880043116.01.T01:CDS 45.0%
! GGTCCAACTCATGATCCTTT+TGG - Chr8:19276184-19276203 MsG0880043116.01.T01:CDS 45.0%
! TAAGCTATGGTGGTGCACTT+AGG - Chr8:19275861-19275880 MsG0880043116.01.T01:CDS 45.0%
! TATCGTGGTGTCTAGGGTTT+CGG + Chr8:19275031-19275050 None:intergenic 45.0%
! TGACGTTGATGAGGAGAAGA+TGG - Chr8:19275718-19275737 MsG0880043116.01.T01:CDS 45.0%
!! AGGTTATGGCTGATTTGCAG+CGG - Chr8:19276128-19276147 MsG0880043116.01.T01:CDS 45.0%
!! GTGTCTAGGGTTTCGGTTTT+CGG + Chr8:19275024-19275043 None:intergenic 45.0%
!! TGCTGAGGCTTTGAAGTTGA+AGG - Chr8:19275751-19275770 MsG0880043116.01.T01:CDS 45.0%
!! TGTCTAGGGTTTCGGTTTTC+GGG + Chr8:19275023-19275042 None:intergenic 45.0%
AATCGTAGCTAGGGCTACGA+CGG + Chr8:19274953-19274972 None:intergenic 50.0%
AGAAGTGGGTCTTTCTGCAG+AGG - Chr8:19275946-19275965 MsG0880043116.01.T01:CDS 50.0%
CGTCGTAGGAATCGTAGCTA+GGG + Chr8:19274962-19274981 None:intergenic 50.0%
CTTATATGCCCCTCAGCTCT+TGG + Chr8:19275845-19275864 None:intergenic 50.0%
CTTGTGCAGCGTCATATTGG+TGG - Chr8:19276151-19276170 MsG0880043116.01.T01:CDS 50.0%
GAAAGAGGAAGCCATCGAGA+CGG - Chr8:19275591-19275610 MsG0880043116.01.T01:CDS 50.0%
GATGATGAAGAACCACCGGT+TGG - Chr8:19275806-19275825 MsG0880043116.01.T01:CDS 50.0%
GATGGCTGAGATGAATGCTG+AGG - Chr8:19275736-19275755 MsG0880043116.01.T01:CDS 50.0%
GCAATAGCATCTCCTTCACC+CGG + Chr8:19275887-19275906 None:intergenic 50.0%
GGCTTCGGAGGAAATTGAGT+TGG - Chr8:19275655-19275674 MsG0880043116.01.T01:CDS 50.0%
GGGAAACGTATTCCTAGGAG+AGG - Chr8:19275923-19275942 MsG0880043116.01.T01:CDS 50.0%
TCGTCGTAGGAATCGTAGCT+AGG + Chr8:19274963-19274982 None:intergenic 50.0%
TTGGTGAGGGGTTTCGATTG+TGG + Chr8:19274865-19274884 None:intergenic 50.0%
! GAGGGGCATATAAGCTATGG+TGG - Chr8:19275851-19275870 MsG0880043116.01.T01:CDS 50.0%
! GCTGAGGGGCATATAAGCTA+TGG - Chr8:19275848-19275867 MsG0880043116.01.T01:CDS 50.0%
! GTCACAGAAGAAACCGGCTT+TGG - Chr8:19275784-19275803 MsG0880043116.01.T01:CDS 50.0%
!! AAGTTCTGAACCGGTTAGCG+AGG - Chr8:19275634-19275653 MsG0880043116.01.T01:CDS 50.0%
!! GGTTTTCGGGGGATACTGAA+CGG + Chr8:19275010-19275029 None:intergenic 50.0%
!! GTCTAGGGTTTCGGTTTTCG+GGG + Chr8:19275022-19275041 None:intergenic 50.0%
!! TCTAGGGTTTCGGTTTTCGG+GGG + Chr8:19275021-19275040 None:intergenic 50.0%
!! TGTGTCTGTAGCGTTGGTGA+GGG + Chr8:19274878-19274897 None:intergenic 50.0%
!! TTGTGTCTGTAGCGTTGGTG+AGG + Chr8:19274879-19274898 None:intergenic 50.0%
AGACATCGGAGTCAGGTGTG+CGG + Chr8:19274911-19274930 None:intergenic 55.0%
AGACCCACTTCTCCTCTCCT+AGG + Chr8:19275938-19275957 None:intergenic 55.0%
AGGGCGATCGTTGGAGACAT+CGG + Chr8:19274925-19274944 None:intergenic 55.0%
CGGCTTGTGCAGCGTCATAT+TGG - Chr8:19276148-19276167 MsG0880043116.01.T01:CDS 55.0%
GGTCGTTGTGTCTGTAGCGT+TGG + Chr8:19274884-19274903 None:intergenic 55.0%
GTCTGTGTGACGATCGTCGT+AGG + Chr8:19274976-19274995 None:intergenic 55.0%
GTGAGGGGTTTCGATTGTGG+AGG + Chr8:19274862-19274881 None:intergenic 55.0%
TCAGCTCTTGGAAGCGGCAT+TGG + Chr8:19275833-19275852 None:intergenic 55.0%
TCATCGTTCTCGCGTCTTGG+AGG + Chr8:19275185-19275204 None:intergenic 55.0%
TCGTTGGAGACATCGGAGTC+AGG + Chr8:19274918-19274937 None:intergenic 55.0%
TGAACCGGTTAGCGAGGCTT+CGG - Chr8:19275640-19275659 MsG0880043116.01.T01:CDS 55.0%
TTCTCGCGTCTTGGAGGACT+CGG + Chr8:19275179-19275198 None:intergenic 55.0%
! AATGCCGCTTCCAAGAGCTG+AGG - Chr8:19275832-19275851 MsG0880043116.01.T01:CDS 55.0%
! ATGCCGCTTCCAAGAGCTGA+GGG - Chr8:19275833-19275852 MsG0880043116.01.T01:CDS 55.0%
! CTATGGTGGTGCACTTAGGC+CGG - Chr8:19275865-19275884 MsG0880043116.01.T01:CDS 55.0%
! GCAGCGTCATATTGGTGGTC+AGG - Chr8:19276156-19276175 MsG0880043116.01.T01:CDS 55.0%
! TATGGTGGTGCACTTAGGCC+GGG - Chr8:19275866-19275885 MsG0880043116.01.T01:CDS 55.0%
!! GTGTCTGTAGCGTTGGTGAG+GGG + Chr8:19274877-19274896 None:intergenic 55.0%
ATACTGAACGGCGACGGTGG+CGG + Chr8:19274998-19275017 None:intergenic 60.0%
TAGGGCTACGACGGTAGCGA+GGG + Chr8:19274944-19274963 None:intergenic 60.0%
TCCTCCGAAGCCTCGCTAAC+CGG + Chr8:19275647-19275666 None:intergenic 60.0%
TGCCCCTCAGCTCTTGGAAG+CGG + Chr8:19275839-19275858 None:intergenic 60.0%
! TGCCGCTTCCAAGAGCTGAG+GGG - Chr8:19275834-19275853 MsG0880043116.01.T01:CDS 60.0%
ACCGGTTAGCGAGGCTTCGG+AGG - Chr8:19275643-19275662 MsG0880043116.01.T01:CDS 65.0%
ACGGTAGCGAGGGCGATCGT+TGG + Chr8:19274934-19274953 None:intergenic 65.0%
CATCGGAGTCAGGTGTGCGG+CGG + Chr8:19274908-19274927 None:intergenic 65.0%
CGGGGGATACTGAACGGCGA+CGG + Chr8:19275004-19275023 None:intergenic 65.0%
CTAGGGCTACGACGGTAGCG+AGG + Chr8:19274945-19274964 None:intergenic 65.0%
GGGATACTGAACGGCGACGG+TGG + Chr8:19275001-19275020 None:intergenic 65.0%
GGTGCACTTAGGCCGGGTGA+AGG - Chr8:19275872-19275891 MsG0880043116.01.T01:CDS 65.0%
!! GGAAGCGGCATTGGCCCAAC+CGG + Chr8:19275824-19275843 None:intergenic 65.0%
!! AGCGGCATTGGCCCAACCGG+TGG + Chr8:19275821-19275840 None:intergenic 70.0%
CGGAGTCAGGTGTGCGGCGG+CGG + Chr8:19274905-19274924 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 19274846 19276228 19274846 ID=MsG0880043116.01;Name=MsG0880043116.01
Chr8 mRNA 19274846 19276228 19274846 ID=MsG0880043116.01.T01;Parent=MsG0880043116.01;Name=MsG0880043116.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|460
Chr8 exon 19274846 19276228 19274846 ID=MsG0880043116.01.T01:exon:5054;Parent=MsG0880043116.01.T01
Chr8 CDS 19274846 19276228 19274846 ID=MsG0880043116.01.T01:cds;Parent=MsG0880043116.01.T01
Gene Sequence

>MsG0880043116.01.T01

ATGGCGAGACTCTCCTCCACAATCGAAACCCCTCACCAACGCTACAGACACAACGACCGCCGCCGCACACCTGACTCCGATGTCTCCAACGATCGCCCTCGCTACCGTCGTAGCCCTAGCTACGATTCCTACGACGATCGTCACACAGACCGCCACCGTCGCCGTTCAGTATCCCCCGAAAACCGAAACCCTAGACACCACGATAACGGAAATTCAAACGGGAAATCTCAAACGGGTAACGAATCGGAACGATTGAGTTACGAAGAGTATCGCAGATTGAAGAGGCAAAAGATGAGGAAATCGTTGAAGCACTGTATTTGGAATGTTACGCCGAGTCCTCCAAGACGCGAGAACGATGATTTAGAAGATTATGGAAAACCTGAAGAAATTTTTGAGAAAATTGATGTGAAGAAGGATAAGGAGATTAAACTGAAAGCAAAATCTGAGTCTGAATCGGAGGAATCTAAAGAATCTGAATCGGAATTGAGGAAGAAGAGGGGAAAAAGTTCTAAGAAATCGCGTGAAAGCGATAGTGAATCTGAATCAGAAGAGGAAGATAGGAAGAGGAGGAAGAGTAGGAAGTATAGTGAGAGTGATAGCGATTCTGAAGAAGATCGAAAGAGGAGAAAGAGAAGGAAGAGTAGTAGAAAGAGGAGGAAGAGTAGTAGGAAGAAGAGAAGGTATAGTGATTCAGAAGAGAGTGAAAGTGATGATGAGTCTGAATCTGACTCTGATGATGGTTTAAGAAAGAGGAAGCCATCGAGACGGAGTAGAAAAAGCAAGAAGAAAAGTTCTGAACCGGTTAGCGAGGCTTCGGAGGAAATTGAGTTGGGTTCTGATTCGGCTGTTGCGAAGAGTAATGAAGAAATTGATGACGTTGATGAGGAGAAGATGGCTGAGATGAATGCTGAGGCTTTGAAGTTGAAGGAATTGTTTGAGTCACAGAAGAAACCGGCTTTGGATGATGAAGAACCACCGGTTGGGCCAATGCCGCTTCCAAGAGCTGAGGGGCATATAAGCTATGGTGGTGCACTTAGGCCGGGTGAAGGAGATGCTATTGCGCAATATGTTCAACAAGGGAAACGTATTCCTAGGAGAGGAGAAGTGGGTCTTTCTGCAGAGGAGATTTCGAAGTTTGAGGAACTTGGTTATGTGATGAGTGGTAGCAGGCATCAGAGAATGAATGCAATTCGTATTAGGAAAGAAAACCAGGTTTATAGTGCTGAAGATAAGCGTGCTTTGGCTATGTTTAATTATGAAGAGAAGGCTAAAAGGGAGCATAAGGTTATGGCTGATTTGCAGCGGCTTGTGCAGCGTCATATTGGTGGTCAGGATGTTGGTCCAACTCATGATCCTTTTGGTGCAAAAGATGGTTCTGATTGA

Protein sequence

>MsG0880043116.01.T01

MARLSSTIETPHQRYRHNDRRRTPDSDVSNDRPRYRRSPSYDSYDDRHTDRHRRRSVSPENRNPRHHDNGNSNGKSQTGNESERLSYEEYRRLKRQKMRKSLKHCIWNVTPSPPRRENDDLEDYGKPEEIFEKIDVKKDKEIKLKAKSESESEESKESESELRKKRGKSSKKSRESDSESESEEEDRKRRKSRKYSESDSDSEEDRKRRKRRKSSRKRRKSSRKKRRYSDSEESESDDESESDSDDGLRKRKPSRRSRKSKKKSSEPVSEASEEIELGSDSAVAKSNEEIDDVDEEKMAEMNAEALKLKELFESQKKPALDDEEPPVGPMPLPRAEGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGLSAEEISKFEELGYVMSGSRHQRMNAIRIRKENQVYSAEDKRALAMFNYEEKAKREHKVMADLQRLVQRHIGGQDVGPTHDPFGAKDGSD*