AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011141.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011141.01.T01 MTR_2g099500 99.600 250 1 0 1 250 1 250 0.0 514
MsG0280011141.01.T01 MTR_8g019520 80.081 246 48 1 6 250 10 255 1.48e-123 352
MsG0280011141.01.T01 MTR_8g019520 79.757 247 48 2 6 250 10 256 5.55e-122 348
MsG0280011141.01.T01 MTR_2g040990 72.177 248 58 5 6 250 13 252 1.49e-113 326
MsG0280011141.01.T01 MTR_4g134510 67.857 252 76 1 1 247 1 252 1.81e-111 321
MsG0280011141.01.T01 MTR_1g015185 68.775 253 70 3 6 250 11 262 2.66e-108 313
MsG0280011141.01.T01 MTR_4g015830 62.000 250 82 6 1 250 3 239 4.30e-92 271
MsG0280011141.01.T01 MTR_7g068590 58.607 244 91 4 1 244 3 236 3.03e-86 256
MsG0280011141.01.T01 MTR_1g015185 79.286 140 29 0 6 145 11 150 1.18e-70 216
MsG0280011141.01.T01 MTR_8g066480 51.471 136 46 5 116 250 29 145 2.29e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011141.01.T01 AT3G42790 72.653 245 61 3 6 250 11 249 2.46e-118 338
MsG0280011141.01.T01 AT5G20510 69.200 250 71 2 6 250 11 259 1.37e-113 327
MsG0280011141.01.T01 AT1G14510 67.755 245 76 3 6 250 10 251 7.17e-106 306
MsG0280011141.01.T01 AT2G02470 68.340 259 69 6 1 250 1 255 6.78e-105 304
MsG0280011141.01.T01 AT2G02470 68.504 254 68 6 1 250 1 246 4.82e-103 299
MsG0280011141.01.T01 AT5G26210 70.732 246 70 2 6 250 10 254 1.98e-93 275
MsG0280011141.01.T01 AT5G20510 68.519 216 62 2 40 250 4 218 5.28e-92 270
MsG0280011141.01.T01 AT5G05610 60.331 242 84 5 6 247 9 238 3.61e-88 261
MsG0280011141.01.T01 AT5G05610 60.331 242 84 5 6 247 9 238 3.61e-88 261
MsG0280011141.01.T01 AT3G11200 61.570 242 84 5 6 247 11 243 9.77e-86 255
MsG0280011141.01.T01 AT5G20510 74.194 155 40 0 6 160 11 165 1.02e-75 228
MsG0280011141.01.T01 AT3G11200 61.538 208 71 5 40 247 32 230 4.83e-72 220
MsG0280011141.01.T01 AT2G02470 72.785 158 38 2 1 154 1 157 1.04e-66 207

Find 81 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCCTCCTCATCTTT+TGG 0.240666 2:-80074396 None:intergenic
GGTTGTCTGCTCTGAGCTTC+AGG 0.243347 2:-80074357 None:intergenic
TTCTACTTTGGAGCCAGATT+TGG 0.290182 2:+80072278 MsG0280011141.01.T01:CDS
GATTCAATGGGTTATGGTTA+AGG 0.299628 2:-80071196 None:intergenic
ACGGATTGCTTAATGAGAAT+TGG 0.301755 2:+80072111 MsG0280011141.01.T01:CDS
CATTGTTCAATTCGATTCAA+TGG 0.307254 2:-80071209 None:intergenic
AAGGAGAATTTGTGCTTATA+CGG 0.310260 2:+80072092 MsG0280011141.01.T01:CDS
CAAAATGTCATTCCTTCATT+TGG 0.312555 2:-80074870 None:intergenic
AAAACGATGTCGTTTGGATT+AGG 0.323581 2:-80071140 None:intergenic
AATCACATACAAAACTTTGT+TGG 0.336175 2:+80074630 MsG0280011141.01.T01:three_prime_UTR
AACAGGGCGAAGCCACTTGC+GGG 0.339120 2:+80074439 MsG0280011141.01.T01:CDS
CAATTCGATTCAATGGGTTA+TGG 0.346327 2:-80071202 None:intergenic
TTTGGCTGTAATGCCGCTTT+TGG 0.349429 2:-80074378 None:intergenic
GTAACGGGGCTGATGAGTTC+TGG 0.350703 2:+80074475 MsG0280011141.01.T01:CDS
TGCTGGGTATCAACTTTGCC+AGG 0.351612 2:+80072183 MsG0280011141.01.T01:CDS
CTTTGATGATTCCAGTTCTT+CGG 0.353581 2:-80071279 None:intergenic
AAGAAATTATACCGACGGTT+AGG 0.356361 2:-80071303 None:intergenic
ATTATTTACCGCTTTAGAAC+TGG 0.360765 2:-80073109 None:intergenic
GGGCTTGTGGTGATAGTAAC+GGG 0.362851 2:+80074460 MsG0280011141.01.T01:CDS
ATTCAATGGGTTATGGTTAA+GGG 0.365057 2:-80071195 None:intergenic
AGAGATTCCTGAGCCTGTGC+TGG 0.371017 2:+80072166 MsG0280011141.01.T01:CDS
GATTTCAAGAGCCGAAGAAC+TGG 0.371977 2:+80071268 MsG0280011141.01.T01:CDS
ACAGTATTTGAAGTTGTAAC+TGG 0.378246 2:+80073021 MsG0280011141.01.T01:CDS
AGATTGAAAACGATGTCGTT+TGG 0.383693 2:-80071146 None:intergenic
CTTTCCCTTGCATTCTACTT+TGG 0.386606 2:+80072266 MsG0280011141.01.T01:CDS
CGGATTGCTTAATGAGAATT+GGG 0.394937 2:+80072112 MsG0280011141.01.T01:CDS
TTTCTCTTGCATTCCATCCC+TGG 0.397443 2:-80072201 None:intergenic
AGAGCAGGATGATGATGAAC+AGG 0.397479 2:+80074422 MsG0280011141.01.T01:CDS
AGCTTTATCAAATCCAAATC+TGG 0.410286 2:-80072291 None:intergenic
AGCACAGGCTCAGGAATCTC+TGG 0.425752 2:-80072164 None:intergenic
AAAAGATGAGGAGGAAGAAC+TGG 0.426868 2:+80074398 MsG0280011141.01.T01:CDS
TCTTGTTACTGCTGCATGAT+GGG 0.433135 2:-80074587 None:intergenic
TCTGGAGGAACTTCTTCAAC+AGG 0.445499 2:-80072146 None:intergenic
CAGTGGCCACCTTAGTGTTA+TGG 0.446538 2:+80074822 MsG0280011141.01.T01:three_prime_UTR
AGAAAGAAAAGCATATTAAC+CGG 0.449243 2:-80074666 None:intergenic
ATTGTTCAATTCGATTCAAT+GGG 0.450426 2:-80071208 None:intergenic
AGAAATTATACCGACGGTTA+GGG 0.452362 2:-80071302 None:intergenic
GGAGGAAGAACTGGAAGAGC+AGG 0.470600 2:+80074407 MsG0280011141.01.T01:CDS
ACGACATTTGCACCAAATGA+AGG 0.471559 2:+80074858 MsG0280011141.01.T01:three_prime_UTR
CCAGAACTAGAGAAAAGACT+TGG 0.475974 2:-80074798 None:intergenic
CATTAATTTCCATAACACTA+AGG 0.480224 2:-80074831 None:intergenic
CTCTTGTTACTGCTGCATGA+TGG 0.480424 2:-80074588 None:intergenic
TGTTGGAGTCTTCACTGATC+CGG 0.484963 2:+80074647 MsG0280011141.01.T01:three_prime_UTR
TTCTACAGACAATGTGATCC+TGG 0.488698 2:+80071489 MsG0280011141.01.T01:CDS
TTGATACCCAGCACAGGCTC+AGG 0.497706 2:-80072173 None:intergenic
ATCACTGTGAACAGCAACTA+AGG 0.498800 2:-80072234 None:intergenic
TTGCTGTTCACAGTGATACA+TGG 0.507689 2:+80072240 MsG0280011141.01.T01:CDS
ATCTGCGAGAAGTGGTTCCA+TGG 0.517485 2:+80074510 MsG0280011141.01.T01:CDS
GGTATCAACTTTGCCAGGGA+TGG 0.520071 2:+80072188 MsG0280011141.01.T01:CDS
GAGATTCCTGAGCCTGTGCT+GGG 0.523852 2:+80072167 MsG0280011141.01.T01:CDS
TTTCTTTCTAGACGCATTGG+TGG 0.530027 2:+80074680 MsG0280011141.01.T01:three_prime_UTR
ATGGAATGCAAGAGAAAGAC+TGG 0.533268 2:+80072207 MsG0280011141.01.T01:CDS
GAAGCCACTTGCGGGGCTTG+TGG 0.543776 2:+80074447 MsG0280011141.01.T01:CDS
TTGATATGCTCAGCACGAGC+AGG 0.552258 2:-80074552 None:intergenic
GAATCGAATTGAACAATGGA+AGG 0.552287 2:+80071214 MsG0280011141.01.T01:exon
TTGGATTTGATAAAGCTGAC+AGG 0.552742 2:+80072297 MsG0280011141.01.T01:CDS
GGGGCTTGTGGTGATAGTAA+CGG 0.558893 2:+80074459 MsG0280011141.01.T01:CDS
GTTACAACTTCAAATACTGT+TGG 0.565683 2:-80073018 None:intergenic
GCTGCGACATCTGCGAGAAG+TGG 0.566172 2:+80074502 MsG0280011141.01.T01:CDS
GAACAGGGCGAAGCCACTTG+CGG 0.571946 2:+80074438 MsG0280011141.01.T01:CDS
TGGCTCCAAAGTAGAATGCA+AGG 0.572860 2:-80072271 None:intergenic
TAGTTGAAACATTGTTGACT+AGG 0.574871 2:+80074769 MsG0280011141.01.T01:three_prime_UTR
ATCTAAGTCCAGTTCTAAAG+CGG 0.587642 2:+80073101 MsG0280011141.01.T01:CDS
CATAACACTAAGGTGGCCAC+TGG 0.593168 2:-80074821 None:intergenic
AGTCAACAATGTTTCAACTA+CGG 0.594527 2:-80074766 None:intergenic
ATCACCACAAGCCCCGCAAG+TGG 0.598002 2:-80074451 None:intergenic
TCAGAGCAGACAACCAAAAG+CGG 0.606960 2:+80074365 MsG0280011141.01.T01:CDS
CATTGAATCGAATTGAACAA+TGG 0.620243 2:+80071210 MsG0280011141.01.T01:exon
GCTGGGTATCAACTTTGCCA+GGG 0.620748 2:+80072184 MsG0280011141.01.T01:CDS
TAATTTCCATAACACTAAGG+TGG 0.623750 2:-80074828 None:intergenic
GCAAAGTTGATACCCAGCAC+AGG 0.629760 2:-80072179 None:intergenic
ATCATCAAAGCCCTAACCGT+CGG 0.634254 2:+80071292 MsG0280011141.01.T01:CDS
GGCATTACAGCCAAAAGATG+AGG 0.636479 2:+80074386 MsG0280011141.01.T01:CDS
GGCTCCAAAGTAGAATGCAA+GGG 0.639786 2:-80072270 None:intergenic
ACAGGGCGAAGCCACTTGCG+GGG 0.643480 2:+80074440 MsG0280011141.01.T01:CDS
CAGAACTAGAGAAAAGACTT+GGG 0.649772 2:-80074797 None:intergenic
ACAGGCTCAGGAATCTCTGG+AGG 0.651339 2:-80072161 None:intergenic
ATTACAGCCAAAAGATGAGG+AGG 0.661732 2:+80074389 MsG0280011141.01.T01:CDS
GAGCAGGATGATGATGAACA+GGG 0.682274 2:+80074423 MsG0280011141.01.T01:CDS
GGCTTGTGGTGATAGTAACG+GGG 0.707309 2:+80074461 MsG0280011141.01.T01:CDS
TCTTCAGTCTCAAACAACAG+TGG 0.724521 2:+80073072 MsG0280011141.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGAAAATGATATTATT+AGG - Chr2:80073949-80073968 None:intergenic 10.0%
!!! AAATAAATACAACTATTTTA+AGG - Chr2:80072034-80072053 None:intergenic 10.0%
!!! AATAAATACAACTATTTTAA+GGG - Chr2:80072033-80072052 None:intergenic 10.0%
!! AAATAAATAAGTTAACAATG+TGG + Chr2:80073615-80073634 MsG0280011141.01.T01:intron 15.0%
!! GTATATAAACATAACTTATT+TGG - Chr2:80074217-80074236 None:intergenic 15.0%
!! TAAATAAAATTCAAAAACCT+TGG - Chr2:80071415-80071434 None:intergenic 15.0%
!!! AAAATGCCTTAATTTTAAAA+AGG - Chr2:80073437-80073456 None:intergenic 15.0%
!!! AAATGCCTTAATTTTAAAAA+GGG - Chr2:80073436-80073455 None:intergenic 15.0%
!!! TTCAATCTTTTTCAAAATTT+TGG + Chr2:80071327-80071346 MsG0280011141.01.T01:intron 15.0%
!!! TTTATTGTCATTTTGAATTT+CGG + Chr2:80073964-80073983 MsG0280011141.01.T01:intron 15.0%
!! AAATAATTGAACCCTAAAAT+TGG - Chr2:80071597-80071616 None:intergenic 20.0%
!! AAGAAAAATCTTATTCAACA+AGG - Chr2:80072476-80072495 None:intergenic 20.0%
!! AAGTATACATATCATTAACA+GGG - Chr2:80074051-80074070 None:intergenic 20.0%
!! AGAAAAATCTTATTCAACAA+GGG - Chr2:80072475-80072494 None:intergenic 20.0%
!! AGATAAAAATAGTTATGCTT+CGG - Chr2:80072333-80072352 None:intergenic 20.0%
!! ATCTGTGAATAAAAAAGTAA+AGG + Chr2:80073488-80073507 MsG0280011141.01.T01:intron 20.0%
!! TATCTAATTGATATCTTGTT+TGG + Chr2:80074269-80074288 MsG0280011141.01.T01:intron 20.0%
!! TCTATTGTTTATCCTATAAT+GGG + Chr2:80073328-80073347 MsG0280011141.01.T01:intron 20.0%
!! TGATAATTCATTGTTCTTTA+TGG + Chr2:80071667-80071686 MsG0280011141.01.T01:intron 20.0%
!! TTAACAATTAGATAAGAACA+CGG - Chr2:80074319-80074338 None:intergenic 20.0%
!!! AAATTAAGGCATTTTTCAAA+TGG + Chr2:80073442-80073461 MsG0280011141.01.T01:intron 20.0%
!!! AGAATCCCTTTTTAAAATTA+AGG + Chr2:80073428-80073447 MsG0280011141.01.T01:intron 20.0%
!!! ATCATCAAAAATTTGTTCAA+CGG - Chr2:80071251-80071270 None:intergenic 20.0%
!!! ATCTAATTGATATCTTGTTT+GGG + Chr2:80074270-80074289 MsG0280011141.01.T01:intron 20.0%
!!! CGCTATTATTATTTTAAACA+GGG - Chr2:80073248-80073267 None:intergenic 20.0%
!!! TCGCTATTATTATTTTAAAC+AGG - Chr2:80073249-80073268 None:intergenic 20.0%
!!! TTATTGTCATTTTGAATTTC+GGG + Chr2:80073965-80073984 MsG0280011141.01.T01:intron 20.0%
!!! TTTATTTTCCACCAATTTTA+GGG + Chr2:80071583-80071602 MsG0280011141.01.T01:intron 20.0%
!!! TTTCATTAAATTTTCTACCA+AGG + Chr2:80071395-80071414 MsG0280011141.01.T01:intron 20.0%
!!! TTTTATTTTCCACCAATTTT+AGG + Chr2:80071582-80071601 MsG0280011141.01.T01:intron 20.0%
!!! TTTTCAAAATTTTGGCAAAA+GGG + Chr2:80071335-80071354 MsG0280011141.01.T01:intron 20.0%
!!! TTTTTCAAAATTTTGGCAAA+AGG + Chr2:80071334-80071353 MsG0280011141.01.T01:intron 20.0%
!!! TTTTTTTGCAATAAACAACA+AGG - Chr2:80073593-80073612 None:intergenic 20.0%
! AAACATAACTTATTTGGAAG+TGG - Chr2:80074211-80074230 None:intergenic 25.0%
! AATCACATACAAAACTTTGT+TGG + Chr2:80074630-80074649 MsG0280011141.01.T01:three_prime_UTR 25.0%
! ACTTGTGAAAAAGTTATATC+AGG + Chr2:80072360-80072379 MsG0280011141.01.T01:intron 25.0%
! AGTTTCAACTAACTATGATA+TGG + Chr2:80074134-80074153 MsG0280011141.01.T01:intron 25.0%
! ATTGACTGATAAATAAAAGG+CGG - Chr2:80071735-80071754 None:intergenic 25.0%
! ATTGTTCAATTCGATTCAAT+GGG - Chr2:80071211-80071230 None:intergenic 25.0%
! CAAGTATACATATCATTAAC+AGG - Chr2:80074052-80074071 None:intergenic 25.0%
! CATTAATTTCCATAACACTA+AGG - Chr2:80074834-80074853 None:intergenic 25.0%
! CTGTTAATGATATGTATACT+TGG + Chr2:80074050-80074069 MsG0280011141.01.T01:intron 25.0%
! GATAAAAATAGTTATGCTTC+GGG - Chr2:80072332-80072351 None:intergenic 25.0%
! GCAAATAAAATTGCAAATCA+AGG - Chr2:80072549-80072568 None:intergenic 25.0%
! GTCTATTGTTTATCCTATAA+TGG + Chr2:80073327-80073346 MsG0280011141.01.T01:intron 25.0%
! GTGAAGTATGATGAATATAT+TGG + Chr2:80073806-80073825 MsG0280011141.01.T01:intron 25.0%
! TAAAGAAAAAACCACTTGAT+AGG - Chr2:80072839-80072858 None:intergenic 25.0%
! TAATGATATGTATACTTGGT+TGG + Chr2:80074054-80074073 MsG0280011141.01.T01:intron 25.0%
! TATCTCTCATCATTATTAAG+CGG - Chr2:80074162-80074181 None:intergenic 25.0%
! TATTCTTGCACTAAAATGTT+TGG + Chr2:80071433-80071452 MsG0280011141.01.T01:intron 25.0%
! TTGTCTCCTTCTTTATTAAT+CGG + Chr2:80073673-80073692 MsG0280011141.01.T01:intron 25.0%
!! AAAGGAACAACTAGTTTAAT+TGG + Chr2:80073506-80073525 MsG0280011141.01.T01:intron 25.0%
!! ACTAAAGAATCGTTTCATTT+TGG - Chr2:80073547-80073566 None:intergenic 25.0%
!! AGAAAGAAAAGCATATTAAC+CGG - Chr2:80074669-80074688 None:intergenic 25.0%
!! TTTTATTCACAGATGCTTAA+CGG - Chr2:80073482-80073501 None:intergenic 25.0%
!!! ATACCATTTTTTCCTGAAAA+AGG + Chr2:80072634-80072653 MsG0280011141.01.T01:intron 25.0%
!!! TAAGCTATTTCTAAGGAAAA+TGG - Chr2:80071933-80071952 None:intergenic 25.0%
!!! TACCATTTTTTCCTGAAAAA+GGG + Chr2:80072635-80072654 MsG0280011141.01.T01:intron 25.0%
!!! TGTTTTAAGATAGTACAAGA+AGG + Chr2:80072770-80072789 MsG0280011141.01.T01:intron 25.0%
!!! TTTTATGAAGTTTGAGACAT+AGG + Chr2:80074708-80074727 MsG0280011141.01.T01:three_prime_UTR 25.0%
AAGGAGAATTTGTGCTTATA+CGG + Chr2:80072092-80072111 MsG0280011141.01.T01:CDS 30.0%
AAGGTATGCAGAAATAAAAG+AGG + Chr2:80073911-80073930 MsG0280011141.01.T01:intron 30.0%
AATAATCTGCTTATCCAAAC+AGG + Chr2:80072007-80072026 MsG0280011141.01.T01:intron 30.0%
ACTTTCAATGCAAAATTGTG+TGG + Chr2:80074235-80074254 MsG0280011141.01.T01:intron 30.0%
AGGATGAGTATGTTAAGTTA+AGG + Chr2:80072380-80072399 MsG0280011141.01.T01:intron 30.0%
AGGGTTCAATTATTTGCAAT+TGG + Chr2:80071602-80071621 MsG0280011141.01.T01:intron 30.0%
AGTCAACAATGTTTCAACTA+CGG - Chr2:80074769-80074788 None:intergenic 30.0%
AGTTAGTTGAAACTTGTGAA+GGG - Chr2:80074128-80074147 None:intergenic 30.0%
ATAGTACAAGAAGGAAAAGT+TGG + Chr2:80072779-80072798 MsG0280011141.01.T01:intron 30.0%
CAAAATGTCATTCCTTCATT+TGG - Chr2:80074873-80074892 None:intergenic 30.0%
CAAAATTTGTAGATCAAGCA+AGG - Chr2:80071371-80071390 None:intergenic 30.0%
CAATACATGAAAGATAACCA+TGG - Chr2:80073308-80073327 None:intergenic 30.0%
CATTGAATCGAATTGAACAA+TGG + Chr2:80071210-80071229 MsG0280011141.01.T01:exon 30.0%
CATTGTTCAATTCGATTCAA+TGG - Chr2:80071212-80071231 None:intergenic 30.0%
CTGTTGTATTCTTTCAGAAA+AGG + Chr2:80072073-80072092 MsG0280011141.01.T01:intron 30.0%
GCATTGAAATTAAACTAACC+AGG - Chr2:80071510-80071529 None:intergenic 30.0%
GTTACAACTTCAAATACTGT+TGG - Chr2:80073021-80073040 None:intergenic 30.0%
TAAGAACTTTACCTTAAGCT+TGG + Chr2:80073739-80073758 MsG0280011141.01.T01:intron 30.0%
TAATTGAACCCTAAAATTGG+TGG - Chr2:80071594-80071613 None:intergenic 30.0%
TAATTTCCATAACACTAAGG+TGG - Chr2:80074831-80074850 None:intergenic 30.0%
TAGACTCCGATTAATAAAGA+AGG - Chr2:80073682-80073701 None:intergenic 30.0%
TAGTTAGTTGAAACTTGTGA+AGG - Chr2:80074129-80074148 None:intergenic 30.0%
TATACATATCATTAACAGGG+TGG - Chr2:80074048-80074067 None:intergenic 30.0%
TATGTATACTTGGTTGGAAA+TGG + Chr2:80074060-80074079 MsG0280011141.01.T01:intron 30.0%
TGAACAAGAAATTATACCGA+CGG - Chr2:80071311-80071330 None:intergenic 30.0%
TTCAAGTGTAGACTGTATAT+AGG + Chr2:80073404-80073423 MsG0280011141.01.T01:intron 30.0%
TTCAAGTGTAGACTGTTTAT+AGG + Chr2:80073216-80073235 MsG0280011141.01.T01:intron 30.0%
TTGCTTATAAGTCATTGTTG+AGG + Chr2:80072565-80072584 MsG0280011141.01.T01:intron 30.0%
TTGTCGCATTTCTATGATTT+AGG + Chr2:80071781-80071800 MsG0280011141.01.T01:intron 30.0%
! AATCATCTGCGTATTTGTTT+TGG + Chr2:80072893-80072912 MsG0280011141.01.T01:intron 30.0%
! AATCGGAGTCTAAAATACTT+TGG + Chr2:80073690-80073709 MsG0280011141.01.T01:intron 30.0%
! ACAGTATTTGAAGTTGTAAC+TGG + Chr2:80073021-80073040 MsG0280011141.01.T01:CDS 30.0%
! AGCTTTATCAAATCCAAATC+TGG - Chr2:80072294-80072313 None:intergenic 30.0%
! ATGATGGAACTGAATAGTTA+TGG + Chr2:80073864-80073883 MsG0280011141.01.T01:intron 30.0%
! CTTGCTTGATCTACAAATTT+TGG + Chr2:80071369-80071388 MsG0280011141.01.T01:intron 30.0%
! TAGTTGAAACATTGTTGACT+AGG + Chr2:80074769-80074788 MsG0280011141.01.T01:three_prime_UTR 30.0%
! TGCGACAAATTTTGCATTAT+AGG - Chr2:80071769-80071788 None:intergenic 30.0%
! TTAATTGGTTTCTTTGAGCA+AGG + Chr2:80073521-80073540 MsG0280011141.01.T01:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + Chr2:80071842-80071861 MsG0280011141.01.T01:intron 30.0%
!! ATTATTTACCGCTTTAGAAC+TGG - Chr2:80073112-80073131 None:intergenic 30.0%
!! ATTCAATGGGTTATGGTTAA+GGG - Chr2:80071198-80071217 None:intergenic 30.0%
!! CGCATTGACTGATAAATAAA+AGG - Chr2:80071738-80071757 None:intergenic 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + Chr2:80071843-80071862 MsG0280011141.01.T01:intron 30.0%
!! TTGGTGTTTCGTTACATTTT+GGG + Chr2:80073709-80073728 MsG0280011141.01.T01:intron 30.0%
!!! ACCATTTTTTCCTGAAAAAG+GGG + Chr2:80072636-80072655 MsG0280011141.01.T01:intron 30.0%
!!! TTTGGTGTTTCGTTACATTT+TGG + Chr2:80073708-80073727 MsG0280011141.01.T01:intron 30.0%
AAGAAATTATACCGACGGTT+AGG - Chr2:80071306-80071325 None:intergenic 35.0%
AATCGAAGATTCCTATCAAG+TGG + Chr2:80072825-80072844 MsG0280011141.01.T01:intron 35.0%
AATGGCAAATTAGGACAAGA+AGG - Chr2:80072957-80072976 None:intergenic 35.0%
AGAAATTATACCGACGGTTA+GGG - Chr2:80071305-80071324 None:intergenic 35.0%
AGATTGAAAACGATGTCGTT+TGG - Chr2:80071149-80071168 None:intergenic 35.0%
CAGAACTAGAGAAAAGACTT+GGG - Chr2:80074800-80074819 None:intergenic 35.0%
CATGGACAAAAGACAATACA+TGG - Chr2:80073290-80073309 None:intergenic 35.0%
CGGATTGCTTAATGAGAATT+GGG + Chr2:80072112-80072131 MsG0280011141.01.T01:CDS 35.0%
GAATCGAATTGAACAATGGA+AGG + Chr2:80071214-80071233 MsG0280011141.01.T01:exon 35.0%
GCTAGAAAGCAGTTATAAAG+TGG - Chr2:80072521-80072540 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG + Chr2:80071818-80071837 MsG0280011141.01.T01:intron 35.0%
GTTAAGTTAAGGCAGTAGTT+TGG + Chr2:80072391-80072410 MsG0280011141.01.T01:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - Chr2:80071808-80071827 None:intergenic 35.0%
TCAATGCAAAATTGTGTGGA+AGG + Chr2:80074239-80074258 MsG0280011141.01.T01:intron 35.0%
TGAATCGCAGTGTAAAACTT+AGG + Chr2:80073187-80073206 MsG0280011141.01.T01:intron 35.0%
TGCAATAAACAACAAGGTCT+TGG - Chr2:80073587-80073606 None:intergenic 35.0%
TGCATCACAAATGGCAAATT+AGG - Chr2:80072966-80072985 None:intergenic 35.0%
TGTTCTCATCTATCTGTCTA+TGG + Chr2:80073378-80073397 MsG0280011141.01.T01:intron 35.0%
TTGCAGAATAACCAAGCTTA+AGG - Chr2:80073753-80073772 None:intergenic 35.0%
TTGGATTTGATAAAGCTGAC+AGG + Chr2:80072297-80072316 MsG0280011141.01.T01:CDS 35.0%
TTGTTTAGTCATCGTTGTGT+TGG + Chr2:80072437-80072456 MsG0280011141.01.T01:intron 35.0%
! AAAACGATGTCGTTTGGATT+AGG - Chr2:80071143-80071162 None:intergenic 35.0%
! ACGGATTGCTTAATGAGAAT+TGG + Chr2:80072111-80072130 MsG0280011141.01.T01:CDS 35.0%
! CAAGCTTTGTACTTGTATGA+TGG + Chr2:80073848-80073867 MsG0280011141.01.T01:intron 35.0%
! CACTTGAATTGCTACTTGTA+AGG + Chr2:80073892-80073911 MsG0280011141.01.T01:intron 35.0%
! CATGTATTGTCTTTTGTCCA+TGG + Chr2:80073288-80073307 MsG0280011141.01.T01:intron 35.0%
! CTTTGATGATTCCAGTTCTT+CGG - Chr2:80071282-80071301 None:intergenic 35.0%
! TAATTTGCCATTTGTGATGC+AGG + Chr2:80072965-80072984 MsG0280011141.01.T01:intron 35.0%
! TCTATGATTTAGGACCTGTT+TGG + Chr2:80071791-80071810 MsG0280011141.01.T01:intron 35.0%
! TGATCTTCACACATTTTCCA+TGG - Chr2:80074530-80074549 None:intergenic 35.0%
! TGGTGTTTCGTTACATTTTG+GGG + Chr2:80073710-80073729 MsG0280011141.01.T01:intron 35.0%
!! AACTATTTTAAGGGCCTGTT+TGG - Chr2:80072024-80072043 None:intergenic 35.0%
!! ATCTAAGTCCAGTTCTAAAG+CGG + Chr2:80073101-80073120 MsG0280011141.01.T01:CDS 35.0%
!! CAATTCGATTCAATGGGTTA+TGG - Chr2:80071205-80071224 None:intergenic 35.0%
!! GATTCAATGGGTTATGGTTA+AGG - Chr2:80071199-80071218 None:intergenic 35.0%
!! GCTTGCATAAGCTATTTCTA+AGG - Chr2:80071940-80071959 None:intergenic 35.0%
!! GTAGCTTTGAATTCTGATGT+AGG + Chr2:80071698-80071717 MsG0280011141.01.T01:intron 35.0%
!! TGAATTTCGGGTTTAGAATG+TGG + Chr2:80073977-80073996 MsG0280011141.01.T01:intron 35.0%
!!! TCCCCTTTTTCAGGAAAAAA+TGG - Chr2:80072640-80072659 None:intergenic 35.0%
AAAAGATGAGGAGGAAGAAC+TGG + Chr2:80074398-80074417 MsG0280011141.01.T01:CDS 40.0%
AAACAACAAGGTCTTGGATG+AGG - Chr2:80073581-80073600 None:intergenic 40.0%
ACAAAAACAAGACACAACGC+AGG - Chr2:80071011-80071030 None:intergenic 40.0%
ACGACATTTGCACCAAATGA+AGG + Chr2:80074858-80074877 MsG0280011141.01.T01:three_prime_UTR 40.0%
AGCCACAATTGATGCTCTTT+CGG + Chr2:80072861-80072880 MsG0280011141.01.T01:intron 40.0%
ATCACTGTGAACAGCAACTA+AGG - Chr2:80072237-80072256 None:intergenic 40.0%
ATGGAATGCAAGAGAAAGAC+TGG + Chr2:80072207-80072226 MsG0280011141.01.T01:CDS 40.0%
ATTACAGCCAAAAGATGAGG+AGG + Chr2:80074389-80074408 MsG0280011141.01.T01:CDS 40.0%
CAATACATGGAGAGTTTGTC+AGG - Chr2:80073277-80073296 None:intergenic 40.0%
CACAGACTAAACAATCTGCA+TGG - Chr2:80073360-80073379 None:intergenic 40.0%
CCAGAACTAGAGAAAAGACT+TGG - Chr2:80074801-80074820 None:intergenic 40.0%
CTTTCCCTTGCATTCTACTT+TGG + Chr2:80072266-80072285 MsG0280011141.01.T01:CDS 40.0%
TCTTCAGTCTCAAACAACAG+TGG + Chr2:80073072-80073091 MsG0280011141.01.T01:CDS 40.0%
TCTTGTTACTGCTGCATGAT+GGG - Chr2:80074590-80074609 None:intergenic 40.0%
TGATGTGACTAAGAGGTCAT+AGG - Chr2:80072705-80072724 None:intergenic 40.0%
TTCTACAGACAATGTGATCC+TGG + Chr2:80071489-80071508 MsG0280011141.01.T01:CDS 40.0%
TTGAAACTTGTGAAGGGAGA+TGG - Chr2:80074122-80074141 None:intergenic 40.0%
TTTCTTTCTAGACGCATTGG+TGG + Chr2:80074680-80074699 MsG0280011141.01.T01:three_prime_UTR 40.0%
! AGTTCTTCCTCCTCATCTTT+TGG - Chr2:80074399-80074418 None:intergenic 40.0%
! GATTTAGGACCTGTTTGGAT+TGG + Chr2:80071796-80071815 MsG0280011141.01.T01:intron 40.0%
! GCACAAGTTTTCAACATGAG+AGG + Chr2:80074183-80074202 MsG0280011141.01.T01:intron 40.0%
! GCTTTTCTTTCTAGACGCAT+TGG + Chr2:80074677-80074696 MsG0280011141.01.T01:three_prime_UTR 40.0%
! TTGCTGTTCACAGTGATACA+TGG + Chr2:80072240-80072259 MsG0280011141.01.T01:CDS 40.0%
!! CCAAGTCTTTTCTCTAGTTC+TGG + Chr2:80074798-80074817 MsG0280011141.01.T01:three_prime_UTR 40.0%
!! TTCTACTTTGGAGCCAGATT+TGG + Chr2:80072278-80072297 MsG0280011141.01.T01:CDS 40.0%
ATCATCAAAGCCCTAACCGT+CGG + Chr2:80071292-80071311 MsG0280011141.01.T01:CDS 45.0%
CATGGCAGCATTTCTATAGC+AGG + Chr2:80072727-80072746 MsG0280011141.01.T01:intron 45.0%
CCATGTGTGATGTGACTAAG+AGG - Chr2:80072712-80072731 None:intergenic 45.0%
CCTCTTAGTCACATCACACA+TGG + Chr2:80072709-80072728 MsG0280011141.01.T01:intron 45.0%
CCTCTTGCAGATGCAAAGTA+AGG - Chr2:80072664-80072683 None:intergenic 45.0%
CCTTACTTTGCATCTGCAAG+AGG + Chr2:80072661-80072680 MsG0280011141.01.T01:intron 45.0%
CTCTTGTTACTGCTGCATGA+TGG - Chr2:80074591-80074610 None:intergenic 45.0%
GAAGGAGACAAGCTGTAAAC+TGG - Chr2:80073664-80073683 None:intergenic 45.0%
GACGTTTCCTGCATCACAAA+TGG - Chr2:80072975-80072994 None:intergenic 45.0%
GATTTCAAGAGCCGAAGAAC+TGG + Chr2:80071268-80071287 MsG0280011141.01.T01:CDS 45.0%
GGCATTACAGCCAAAAGATG+AGG + Chr2:80074386-80074405 MsG0280011141.01.T01:CDS 45.0%
GGCTCCAAAGTAGAATGCAA+GGG - Chr2:80072273-80072292 None:intergenic 45.0%
GTTGAGGCAGTATTCCAACA+CGG + Chr2:80072581-80072600 MsG0280011141.01.T01:intron 45.0%
TCAGAGCAGACAACCAAAAG+CGG + Chr2:80074365-80074384 MsG0280011141.01.T01:CDS 45.0%
TCTGGAGGAACTTCTTCAAC+AGG - Chr2:80072149-80072168 None:intergenic 45.0%
TGGCTCCAAAGTAGAATGCA+AGG - Chr2:80072274-80072293 None:intergenic 45.0%
TGTTGGAGTCTTCACTGATC+CGG + Chr2:80074647-80074666 MsG0280011141.01.T01:three_prime_UTR 45.0%
TTTCTCTTGCATTCCATCCC+TGG - Chr2:80072204-80072223 None:intergenic 45.0%
! AAGTAAGGCTCCCCTTTTTC+AGG - Chr2:80072649-80072668 None:intergenic 45.0%
! AGAGCAGGATGATGATGAAC+AGG + Chr2:80074422-80074441 MsG0280011141.01.T01:CDS 45.0%
! GAGCAGGATGATGATGAACA+GGG + Chr2:80074423-80074442 MsG0280011141.01.T01:CDS 45.0%
!! GACCGAAAGAGCATCAATTG+TGG - Chr2:80072866-80072885 None:intergenic 45.0%
!! GCATGGAGAGTACCCATTAT+AGG - Chr2:80073343-80073362 None:intergenic 45.0%
!!! TTTGGCTGTAATGCCGCTTT+TGG - Chr2:80074381-80074400 None:intergenic 45.0%
!!! TTTTCTCTAGTTCTGGCCAG+TGG + Chr2:80074805-80074824 MsG0280011141.01.T01:three_prime_UTR 45.0%
ATCTGCGAGAAGTGGTTCCA+TGG + Chr2:80074510-80074529 MsG0280011141.01.T01:CDS 50.0%
CAGTGGCCACCTTAGTGTTA+TGG + Chr2:80074822-80074841 MsG0280011141.01.T01:three_prime_UTR 50.0%
CATAACACTAAGGTGGCCAC+TGG - Chr2:80074824-80074843 None:intergenic 50.0%
GCAGTATTCCAACACGGAGA+CGG + Chr2:80072587-80072606 MsG0280011141.01.T01:intron 50.0%
GCTGGGTATCAACTTTGCCA+GGG + Chr2:80072184-80072203 MsG0280011141.01.T01:CDS 50.0%
GGCTTGTGGTGATAGTAACG+GGG + Chr2:80074461-80074480 MsG0280011141.01.T01:CDS 50.0%
GGGCTTGTGGTGATAGTAAC+GGG + Chr2:80074460-80074479 MsG0280011141.01.T01:CDS 50.0%
GGGGCTTGTGGTGATAGTAA+CGG + Chr2:80074459-80074478 MsG0280011141.01.T01:CDS 50.0%
GGTATCAACTTTGCCAGGGA+TGG + Chr2:80072188-80072207 MsG0280011141.01.T01:CDS 50.0%
TGCTGGGTATCAACTTTGCC+AGG + Chr2:80072183-80072202 MsG0280011141.01.T01:CDS 50.0%
TTCAACATCCGTCTCCGTGT+TGG - Chr2:80072598-80072617 None:intergenic 50.0%
TTGATATGCTCAGCACGAGC+AGG - Chr2:80074555-80074574 None:intergenic 50.0%
!! GCAAAGTTGATACCCAGCAC+AGG - Chr2:80072182-80072201 None:intergenic 50.0%
ACAGGCTCAGGAATCTCTGG+AGG - Chr2:80072164-80072183 None:intergenic 55.0%
AGAGATTCCTGAGCCTGTGC+TGG + Chr2:80072166-80072185 MsG0280011141.01.T01:CDS 55.0%
AGCACAGGCTCAGGAATCTC+TGG - Chr2:80072167-80072186 None:intergenic 55.0%
GAGATTCCTGAGCCTGTGCT+GGG + Chr2:80072167-80072186 MsG0280011141.01.T01:CDS 55.0%
GAGGTCATAGGCTCAAGTCG+TGG - Chr2:80072693-80072712 None:intergenic 55.0%
GGAGGAAGAACTGGAAGAGC+AGG + Chr2:80074407-80074426 MsG0280011141.01.T01:CDS 55.0%
TTGATACCCAGCACAGGCTC+AGG - Chr2:80072176-80072195 None:intergenic 55.0%
! GGTTGTCTGCTCTGAGCTTC+AGG - Chr2:80074360-80074379 None:intergenic 55.0%
! GTAACGGGGCTGATGAGTTC+TGG + Chr2:80074475-80074494 MsG0280011141.01.T01:CDS 55.0%
AACAGGGCGAAGCCACTTGC+GGG + Chr2:80074439-80074458 MsG0280011141.01.T01:CDS 60.0%
ATCACCACAAGCCCCGCAAG+TGG - Chr2:80074454-80074473 None:intergenic 60.0%
GAACAGGGCGAAGCCACTTG+CGG + Chr2:80074438-80074457 MsG0280011141.01.T01:CDS 60.0%
GCTGCGACATCTGCGAGAAG+TGG + Chr2:80074502-80074521 MsG0280011141.01.T01:CDS 60.0%
ACAGGGCGAAGCCACTTGCG+GGG + Chr2:80074440-80074459 MsG0280011141.01.T01:CDS 65.0%
GAAGCCACTTGCGGGGCTTG+TGG + Chr2:80074447-80074466 MsG0280011141.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 80071005 80074895 80071005 ID=MsG0280011141.01;Name=MsG0280011141.01
Chr2 mRNA 80071005 80074895 80071005 ID=MsG0280011141.01.T01;Parent=MsG0280011141.01;Name=MsG0280011141.01.T01;_AED=0.49;_eAED=0.49;_QI=224|1|1|1|1|1|5|275|250
Chr2 exon 80071005 80071313 80071005 ID=MsG0280011141.01.T01:exon:10170;Parent=MsG0280011141.01.T01
Chr2 exon 80071478 80071510 80071478 ID=MsG0280011141.01.T01:exon:10171;Parent=MsG0280011141.01.T01
Chr2 exon 80072090 80072318 80072090 ID=MsG0280011141.01.T01:exon:10172;Parent=MsG0280011141.01.T01
Chr2 exon 80072987 80073122 80072987 ID=MsG0280011141.01.T01:exon:10173;Parent=MsG0280011141.01.T01
Chr2 exon 80074351 80074895 80074351 ID=MsG0280011141.01.T01:exon:10174;Parent=MsG0280011141.01.T01
Chr2 five_prime_UTR 80071005 80071228 80071005 ID=MsG0280011141.01.T01:five_prime_utr;Parent=MsG0280011141.01.T01
Chr2 CDS 80071229 80071313 80071229 ID=MsG0280011141.01.T01:cds;Parent=MsG0280011141.01.T01
Chr2 CDS 80071478 80071510 80071478 ID=MsG0280011141.01.T01:cds;Parent=MsG0280011141.01.T01
Chr2 CDS 80072090 80072318 80072090 ID=MsG0280011141.01.T01:cds;Parent=MsG0280011141.01.T01
Chr2 CDS 80072987 80073122 80072987 ID=MsG0280011141.01.T01:cds;Parent=MsG0280011141.01.T01
Chr2 CDS 80074351 80074620 80074351 ID=MsG0280011141.01.T01:cds;Parent=MsG0280011141.01.T01
Chr2 three_prime_UTR 80074621 80074895 80074621 ID=MsG0280011141.01.T01:three_prime_utr;Parent=MsG0280011141.01.T01
Gene Sequence

>MsG0280011141.01.T01

ATGGAAGGTCGAAGTCGCACCGTTGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACTGGAATCATCAAAGCCCTAACCGTCGATGTTGAAGATTTCTACAGACAATGTGATCCTGAAAAGGAGAATTTGTGCTTATACGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCAGAGATTCCTGAGCCTGTGCTGGGTATCAACTTTGCCAGGGATGGAATGCAAGAGAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTGGATTTGATAAAGCTGACAGGAAACGTCTATTCAATTTGATCAATGAACTGCCAACAGTATTTGAAGTTGTAACTGGTGCTGCAAAGAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGCGAGCTCCTGAAGCTCAGAGCAGACAACCAAAAGCGGCATTACAGCCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGCGAAGCCACTTGCGGGGCTTGTGGTGATAGTAACGGGGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAG

Protein sequence

>MsG0280011141.01.T01

MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALQPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR*