AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023014.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023014.01.T01 MTR_8g083140 65.938 320 19 6 93 331 118 428 9.74e-106 316
MsG0480023014.01.T01 MTR_8g083140 90.323 31 3 0 57 87 3 33 1.35e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023014.01.T01 AT5G17900 58.228 237 42 4 152 331 192 428 1.51e-68 221
MsG0480023014.01.T01 AT5G17900 59.130 115 27 3 142 236 164 278 2.36e-13 70.9
MsG0480023014.01.T01 AT4G08580 58.228 237 42 4 152 331 192 428 1.70e-68 221
MsG0480023014.01.T01 AT4G08580 58.228 237 42 4 152 331 192 428 1.70e-68 221

Find 119 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAAAATACTTCATTAT+TGG 0.186759 4:-79693515 MsG0480023014.01.T01:three_prime_UTR
TCCTTTGGATAGTTGATTAC+TGG 0.234182 4:-79693598 MsG0480023014.01.T01:three_prime_UTR
TCTTTACTCTCACTTTCTTT+TGG 0.251237 4:+79699089 None:intergenic
GATAAGCTTAGAGGTAAAAT+TGG 0.289985 4:-79696015 MsG0480023014.01.T01:CDS
AAACAAAAGTGAATCGTTAT+TGG 0.302600 4:-79695990 MsG0480023014.01.T01:CDS
CTTCAATTTCTGCTTCCTTT+AGG 0.304902 4:+79693667 None:intergenic
GGAGAGAAGAAGACGGATTA+AGG 0.319392 4:-79695652 MsG0480023014.01.T01:CDS
CTTCCTTTAGGCTTCGCTAT+AGG 0.327439 4:+79693679 None:intergenic
CGCGATTTCTCTGCACCAAC+CGG 0.331303 4:-79694994 MsG0480023014.01.T01:CDS
GCTTGGAAAGTGAGAGAGAT+TGG 0.332784 4:-79695254 MsG0480023014.01.T01:CDS
ACCAACCGGGGAAGATAAAA+TGG 0.352546 4:-79694980 MsG0480023014.01.T01:CDS
CATAATTTCTTTAACCAGTT+AGG 0.363508 4:-79693373 MsG0480023014.01.T01:three_prime_UTR
TGCCATTCTCTCATTATACT+TGG 0.364123 4:+79693714 None:intergenic
CATTGTTACCGGCTGTTGTA+AGG 0.375763 4:-79693312 MsG0480023014.01.T01:three_prime_UTR
AGAGTAAAGAGAAGAGATTA+TGG 0.378463 4:-79699076 MsG0480023014.01.T01:CDS
AATTCAGAAACATATTGAAT+TGG 0.382973 4:-79695333 MsG0480023014.01.T01:CDS
AATAATGTATTATTGTCCTT+TGG 0.384855 4:-79693613 MsG0480023014.01.T01:three_prime_UTR
GAAATTAGGGTTTGAAGAAA+AGG 0.391988 4:-79696106 MsG0480023014.01.T01:intron
AAAAGGAATTGTTGAATTTG+TGG 0.393893 4:-79696089 MsG0480023014.01.T01:CDS
ACACAAGTATACATAGGATA+TGG 0.401519 4:+79693551 None:intergenic
AAAATAAGTTCAATCAAAAC+CGG 0.407054 4:+79699052 None:intergenic
GTTAAAGAAATTATGTTGTC+AGG 0.411125 4:+79693381 None:intergenic
GGAGGAAGAAGAAGAGGAGG+AGG 0.418431 4:-79695571 MsG0480023014.01.T01:CDS
TGCTTGACTTGCATAACCTT+GGG 0.433125 4:+79694943 None:intergenic
GGAAGCAGAAATTGAAGGAT+TGG 0.436577 4:-79693661 MsG0480023014.01.T01:exon
GGAAGCAAGGAAGAGGAGAA+TGG 0.439115 4:-79695414 MsG0480023014.01.T01:CDS
TTCATATTCCTCTGCCTCGT+TGG 0.442139 4:+79695277 None:intergenic
AGATTGTTGTTGAGGAGATT+CGG 0.443421 4:-79695367 MsG0480023014.01.T01:CDS
AAGGAAGTCATAGTCCTAAC+TGG 0.445996 4:+79693359 None:intergenic
GGAAGAGGAGGAAGAAGAAG+AGG 0.449096 4:-79695577 MsG0480023014.01.T01:CDS
GATATGAAGGTTGAATTCAA+TGG 0.451645 4:-79699148 MsG0480023014.01.T01:CDS
TCAGAAACATATTGAATTGG+AGG 0.452822 4:-79695330 MsG0480023014.01.T01:CDS
TTGGTAGGATCAAGCGGGAT+AGG 0.457251 4:-79695235 MsG0480023014.01.T01:CDS
GTGATACAGTAATAGCTGTA+AGG 0.463519 4:-79696038 MsG0480023014.01.T01:CDS
TCAGGAAGAGGAGGAGGAAG+AGG 0.472397 4:-79695592 MsG0480023014.01.T01:CDS
AGAGGAGGAAGAAGAAGAGG+AGG 0.474008 4:-79695574 MsG0480023014.01.T01:CDS
CATCACGATTACATTGTTAC+CGG 0.477316 4:-79693323 MsG0480023014.01.T01:three_prime_UTR
AGCTGAAGAGGAGGCTCTTG+AGG 0.477467 4:-79695435 MsG0480023014.01.T01:CDS
AAATTCTAGTGGCATCATAT+AGG 0.478296 4:+79693274 None:intergenic
TTGGCTTAAGCATGCTGCTA+TGG 0.482640 4:-79693496 MsG0480023014.01.T01:three_prime_UTR
GAGGCGAGAGCAGGAAGGGT+TGG 0.483849 4:-79695734 MsG0480023014.01.T01:CDS
GTGCTTGACTTGCATAACCT+TGG 0.487046 4:+79694942 None:intergenic
TGGTAGGATCAAGCGGGATA+GGG 0.489340 4:-79695234 MsG0480023014.01.T01:CDS
ATCGAGCACAGTTTATGCAT+TGG 0.490142 4:-79693470 MsG0480023014.01.T01:three_prime_UTR
AATTCAATGGATATGTTCGT+TGG 0.490305 4:-79699135 MsG0480023014.01.T01:CDS
TATGATCACTCATTTAATTG+AGG 0.493572 4:+79693417 None:intergenic
GAAGTTGCGTCAGAGAGATC+AGG 0.497425 4:-79695628 MsG0480023014.01.T01:CDS
GAACAAGATGAGGGATTGCT+AGG 0.497904 4:-79695702 MsG0480023014.01.T01:CDS
ATTGAAGAGGAGGCGAGAGC+AGG 0.499071 4:-79695743 MsG0480023014.01.T01:intron
AAGAACTAAGTGGTCCCATC+TGG 0.502200 4:-79694905 MsG0480023014.01.T01:CDS
AAAGTGAATCGTTATTGGCC+TGG 0.515029 4:-79695985 MsG0480023014.01.T01:intron
GCGCCTATAGCGAAGCCTAA+AGG 0.515281 4:-79693682 MsG0480023014.01.T01:CDS
TCAGGAGGAAGCGCTTCCTC+AGG 0.518120 4:-79695610 MsG0480023014.01.T01:CDS
CTCTTGAGGAAGCAAGGAAG+AGG 0.518804 4:-79695421 MsG0480023014.01.T01:CDS
GATGACCGAGCTGCCACTGT+TGG 0.522346 4:-79695036 MsG0480023014.01.T01:CDS
GCTGTAAGGGATAAGCTTAG+AGG 0.522415 4:-79696024 MsG0480023014.01.T01:CDS
CTAAAGGAAGCAGAAATTGA+AGG 0.528093 4:-79693666 MsG0480023014.01.T01:exon
GGAAGAGGAGAATGGAGGAG+AGG 0.532365 4:-79695406 MsG0480023014.01.T01:CDS
AAGATGAGGGATTGCTAGGG+GGG 0.533693 4:-79695698 MsG0480023014.01.T01:CDS
GACGAGGCAGATTGTTGTTG+AGG 0.535442 4:-79695375 MsG0480023014.01.T01:CDS
TAGTGTCCTCGTTGACCAGA+TGG 0.535720 4:+79694890 None:intergenic
TCAACGAGGACACTACTGAT+TGG 0.539333 4:-79694882 MsG0480023014.01.T01:CDS
AATATAATCCTTACAACAGC+CGG 0.540685 4:+79693304 None:intergenic
GCGATTTCTCTGCACCAACC+GGG 0.543936 4:-79694993 MsG0480023014.01.T01:CDS
AGGCAGAGGAATATGAAGCT+TGG 0.545681 4:-79695271 MsG0480023014.01.T01:CDS
AGGAGGCTCTTGAGGAAGCA+AGG 0.551309 4:-79695427 MsG0480023014.01.T01:CDS
TGATACAGTAATAGCTGTAA+GGG 0.551558 4:-79696037 MsG0480023014.01.T01:CDS
AGCAAGGAAGAGGAGAATGG+AGG 0.552786 4:-79695411 MsG0480023014.01.T01:CDS
AACAAGATGAGGGATTGCTA+GGG 0.553420 4:-79695701 MsG0480023014.01.T01:CDS
AATGGATATGTTCGTTGGCG+AGG 0.555911 4:-79699130 MsG0480023014.01.T01:CDS
TGTTGTTGAGGAGATTCGGA+AGG 0.557175 4:-79695363 MsG0480023014.01.T01:CDS
AGCCAAGTATAATGAGAGAA+TGG 0.558111 4:-79693716 MsG0480023014.01.T01:CDS
AATTTAGAAGAACAAGATGA+GGG 0.561462 4:-79695711 MsG0480023014.01.T01:CDS
CAGTTCCAACAGTGGCAGCT+CGG 0.562006 4:+79695031 None:intergenic
GCTTCCTCAGGAAGAGGAGG+AGG 0.562101 4:-79695598 MsG0480023014.01.T01:CDS
TGAGCGTCTCGAAGCTGAAG+AGG 0.568841 4:-79695447 MsG0480023014.01.T01:CDS
GGAAAGTGAGAGAGATTGGT+AGG 0.569136 4:-79695250 MsG0480023014.01.T01:CDS
TGATGGAACCAACGAGGCAG+AGG 0.569318 4:-79695285 MsG0480023014.01.T01:CDS
GAATTTAGAAGAACAAGATG+AGG 0.569989 4:-79695712 MsG0480023014.01.T01:CDS
AGAGGAGGCGAGAGCAGGAA+GGG 0.571034 4:-79695738 MsG0480023014.01.T01:intron
GAAGAATAAGCAGATGAGCT+AGG 0.571370 4:+79693439 None:intergenic
GGAAGCGCTTCCTCAGGAAG+AGG 0.574937 4:-79695604 MsG0480023014.01.T01:CDS
AAAAGAACACAAGTATACAT+AGG 0.577039 4:+79693545 None:intergenic
GGTTATGCAAGTCAAGCACT+TGG 0.578760 4:-79694938 MsG0480023014.01.T01:CDS
GGAAGAGGAGGAGGAAGAGG+AGG 0.582995 4:-79695589 MsG0480023014.01.T01:CDS
GGAGAGGAGAAGAGATGCTA+TGG 0.584243 4:-79695676 MsG0480023014.01.T01:CDS
TCATTATACTTGGCTCGAAG+TGG 0.594495 4:+79693724 None:intergenic
TAGGATCAAGCGGGATAGGG+AGG 0.598493 4:-79695231 MsG0480023014.01.T01:CDS
AGTGTCCTCGTTGACCAGAT+GGG 0.598875 4:+79694891 None:intergenic
GTCAAGCACTTGGGTCGCAG+TGG 0.599437 4:-79694928 MsG0480023014.01.T01:CDS
TCTTCCTCCTCCTCTTCCTG+AGG 0.605487 4:+79695594 None:intergenic
TCCAGTAATCAACTATCCAA+AGG 0.613536 4:+79693597 None:intergenic
AAGAGGAGGCGAGAGCAGGA+AGG 0.615636 4:-79695739 MsG0480023014.01.T01:intron
AGAGATTGGTAGGATCAAGC+GGG 0.617603 4:-79695240 MsG0480023014.01.T01:CDS
ATTGCTGATGTGGACACTGA+TGG 0.621248 4:-79695302 MsG0480023014.01.T01:CDS
AGCGCTTCCTCAGGAAGAGG+AGG 0.622259 4:-79695601 MsG0480023014.01.T01:CDS
GAGAGATTGGTAGGATCAAG+CGG 0.624400 4:-79695241 MsG0480023014.01.T01:CDS
GGACAAGACAATACTGCCCA+AGG 0.625247 4:-79694959 MsG0480023014.01.T01:CDS
AAAGAGAAGAGATTATGGCC+CGG 0.625322 4:-79699071 MsG0480023014.01.T01:CDS
GAGGAGAAGAGATGCTATGG+CGG 0.626592 4:-79695673 MsG0480023014.01.T01:CDS
CGATTTCTCTGCACCAACCG+GGG 0.628439 4:-79694992 MsG0480023014.01.T01:CDS
GTTGCGTCAGAGAGATCAGG+AGG 0.629878 4:-79695625 MsG0480023014.01.T01:CDS
CAAGATGAGGGATTGCTAGG+GGG 0.631437 4:-79695699 MsG0480023014.01.T01:CDS
AATATTATCAGTTCCAACAG+TGG 0.632023 4:+79695023 None:intergenic
AAGAACAATGTCTGTAACAG+CGG 0.639853 4:-79696066 MsG0480023014.01.T01:CDS
AGATGAGGGATTGCTAGGGG+GGG 0.643593 4:-79695697 MsG0480023014.01.T01:CDS
GGAGGCGAATATTGCTGATG+TGG 0.645251 4:-79695312 MsG0480023014.01.T01:CDS
AAATAAGTTCAATCAAAACC+GGG 0.645936 4:+79699053 None:intergenic
ACAAGATGAGGGATTGCTAG+GGG 0.646627 4:-79695700 MsG0480023014.01.T01:CDS
GTTATGCAAGTCAAGCACTT+GGG 0.647915 4:-79694937 MsG0480023014.01.T01:CDS
GCGTCTCGAAGCTGAAGAGG+AGG 0.648995 4:-79695444 MsG0480023014.01.T01:CDS
AGGATATGGCATAGCCAGTG+TGG 0.666428 4:+79693565 None:intergenic
CTATGGCGGAGAGAAGAAGA+CGG 0.676104 4:-79695659 MsG0480023014.01.T01:CDS
CTGGAAAGACTAGACCACAC+TGG 0.697779 4:-79693579 MsG0480023014.01.T01:three_prime_UTR
GTCGCAGTGGAAGAACTAAG+TGG 0.701720 4:-79694915 MsG0480023014.01.T01:CDS
AGGAGAGGAGAAATGAGACG+AGG 0.721838 4:-79695391 MsG0480023014.01.T01:CDS
GTGGTCCCATCTGGTCAACG+AGG 0.736632 4:-79694896 MsG0480023014.01.T01:CDS
GGACACTGATGGAACCAACG+AGG 0.787565 4:-79695291 MsG0480023014.01.T01:CDS
GTGATGAGTGATGACATGCA+AGG 0.807451 4:+79693340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTTTTATTTTATA+TGG - Chr4:79694263-79694282 MsG0480023014.01.T01:intron 0.0%
!! TTCTATTAATATAATGATTA+AGG - Chr4:79698003-79698022 MsG0480023014.01.T01:intron 10.0%
!!! AAGAATTTTATCTATATTTT+CGG + Chr4:79693667-79693686 None:intergenic 10.0%
!!! ATGTTTATTTTTAAATGAAA+TGG - Chr4:79698291-79698310 MsG0480023014.01.T01:intron 10.0%
!!! CAAATTTTATGTATTTATAT+CGG - Chr4:79694320-79694339 MsG0480023014.01.T01:intron 10.0%
!!! TTTTATATAAAAACATTGAA+TGG + Chr4:79695515-79695534 None:intergenic 10.0%
!! AAATGAAAATACTTCATTAT+TGG - Chr4:79698911-79698930 MsG0480023014.01.T01:intron 15.0%
!! CATAAAAAATAATATAATCC+AGG + Chr4:79698628-79698647 None:intergenic 15.0%
!! TAAATACATAAAATTTGCAA+CGG + Chr4:79694317-79694336 None:intergenic 15.0%
!! TAATATCAACTAATAGAAAA+TGG + Chr4:79697624-79697643 None:intergenic 15.0%
!! TATTATTGAAAGATATTCAA+GGG + Chr4:79697591-79697610 None:intergenic 15.0%
!! TTTATATAGTTGAATAAACT+GGG - Chr4:79695973-79695992 MsG0480023014.01.T01:intron 15.0%
!!! AAATTAAGTTTGATTACTTT+TGG - Chr4:79695562-79695581 MsG0480023014.01.T01:intron 15.0%
!!! AAGTGTTTATTTTAATTTAC+AGG - Chr4:79693410-79693429 MsG0480023014.01.T01:three_prime_UTR 15.0%
!!! AATCACAAGATATTTTTTTA+AGG + Chr4:79695733-79695752 None:intergenic 15.0%
!!! ATCACAAGTTTTTTTTTTTA+TGG + Chr4:79695658-79695677 None:intergenic 15.0%
!!! CACTTTTTTTTTTTACATAA+AGG - Chr4:79695678-79695697 MsG0480023014.01.T01:CDS 15.0%
!!! TATACAAAAATTTGTTCTTT+TGG - Chr4:79693898-79693917 MsG0480023014.01.T01:intron 15.0%
!!! TATTGTTTGTAACAAATTTT+TGG + Chr4:79695779-79695798 None:intergenic 15.0%
!!! TCTTTTGCATATAAAATAAA+AGG + Chr4:79694094-79694113 None:intergenic 15.0%
!!! TTTTATATAGTTGAATAAAC+TGG - Chr4:79695972-79695991 MsG0480023014.01.T01:intron 15.0%
!! AAAATAAGTTCAATCAAAAC+CGG + Chr4:79693377-79693396 None:intergenic 20.0%
!! AAAATCTAAAAATCTCCATA+AGG + Chr4:79698496-79698515 None:intergenic 20.0%
!! AAATACATAAAATTTGCAAC+GGG + Chr4:79694316-79694335 None:intergenic 20.0%
!! AAATCTAAAAATCTCCATAA+GGG + Chr4:79698495-79698514 None:intergenic 20.0%
!! AATAATGTATTATTGTCCTT+TGG - Chr4:79698813-79698832 MsG0480023014.01.T01:intron 20.0%
!! AATTCAGAAACATATTGAAT+TGG - Chr4:79697093-79697112 MsG0480023014.01.T01:intron 20.0%
!! ACCATTATGCATATAAAATT+AGG - Chr4:79695845-79695864 MsG0480023014.01.T01:intron 20.0%
!! AGTGTGGTTTAAATATTTAA+TGG + Chr4:79694846-79694865 None:intergenic 20.0%
!! CTATTATTGAAAGATATTCA+AGG + Chr4:79697592-79697611 None:intergenic 20.0%
!! TATAAAAAAAACAGGAACAT+AGG + Chr4:79697909-79697928 None:intergenic 20.0%
!! TGAATATCTTTCAATAATAG+CGG - Chr4:79697592-79697611 MsG0480023014.01.T01:intron 20.0%
!! TTATGCATCTATTGAAATTA+GGG - Chr4:79696307-79696326 MsG0480023014.01.T01:intron 20.0%
!! TTTATGCATCTATTGAAATT+AGG - Chr4:79696306-79696325 MsG0480023014.01.T01:intron 20.0%
!!! ACATATTTTGAAAATAGTCA+CGG + Chr4:79694782-79694801 None:intergenic 20.0%
!!! ATTTTATCTATATTTTCGGT+TGG + Chr4:79693663-79693682 None:intergenic 20.0%
!!! CAAATTTTTGTATATGTAAG+AGG + Chr4:79693892-79693911 None:intergenic 20.0%
!!! TAAACATTTAAAATCTGCAA+CGG + Chr4:79695092-79695111 None:intergenic 20.0%
!!! TATAATAAGATGCATTGATA+AGG - Chr4:79697813-79697832 MsG0480023014.01.T01:intron 20.0%
!!! TCCTAATTTTATATGCATAA+TGG + Chr4:79695849-79695868 None:intergenic 20.0%
! AAAAACAAATAAAACCCACA+AGG + Chr4:79697934-79697953 None:intergenic 25.0%
! AAAAGAACACAAGTATACAT+AGG + Chr4:79698884-79698903 None:intergenic 25.0%
! AAAAGGAATTGTTGAATTTG+TGG - Chr4:79696337-79696356 MsG0480023014.01.T01:intron 25.0%
! AAACAAAAGTGAATCGTTAT+TGG - Chr4:79696436-79696455 MsG0480023014.01.T01:intron 25.0%
! AAATAAGTTCAATCAAAACC+GGG + Chr4:79693376-79693395 None:intergenic 25.0%
! AAGCAAATAAAATCAACAAC+CGG + Chr4:79693958-79693977 None:intergenic 25.0%
! AATTTAGAAGAACAAGATGA+GGG - Chr4:79696715-79696734 MsG0480023014.01.T01:intron 25.0%
! ACAAGGACTATAAAAAAAAC+AGG + Chr4:79697917-79697936 None:intergenic 25.0%
! ACCAATTTATAAACAGCAAA+AGG - Chr4:79698121-79698140 MsG0480023014.01.T01:intron 25.0%
! CATAATTTCTTTAACCAGTT+AGG - Chr4:79699053-79699072 MsG0480023014.01.T01:CDS 25.0%
! GAATAGCAAATAATAGGATT+AGG + Chr4:79696159-79696178 None:intergenic 25.0%
! GAGTGTGGTTAAATATTTAA+TGG + Chr4:79694496-79694515 None:intergenic 25.0%
! GTTAAAGAAATTATGTTGTC+AGG + Chr4:79699048-79699067 None:intergenic 25.0%
! TAAGTACATAAAATCTGCAA+CGG + Chr4:79694139-79694158 None:intergenic 25.0%
! TATAAAATTCTCAATGAGTG+TGG + Chr4:79694511-79694530 None:intergenic 25.0%
! TATCCAAAACAAACAGATAA+AGG + Chr4:79698084-79698103 None:intergenic 25.0%
! TATGATCACTCATTTAATTG+AGG + Chr4:79699012-79699031 None:intergenic 25.0%
! TCAAACAAAATGCAGTATAA+AGG + Chr4:79697877-79697896 None:intergenic 25.0%
! TGATTTATATTGAGAAGCTT+TGG - Chr4:79697762-79697781 MsG0480023014.01.T01:intron 25.0%
! TGTAAGATTGTTTAATCCAA+TGG - Chr4:79693591-79693610 MsG0480023014.01.T01:three_prime_UTR 25.0%
! TGTCCCAGAAATTAAAAAAA+GGG - Chr4:79698578-79698597 MsG0480023014.01.T01:intron 25.0%
! TTAATAAAGACGATTGTGAT+TGG - Chr4:79695886-79695905 MsG0480023014.01.T01:intron 25.0%
! TTGTCCCAGAAATTAAAAAA+AGG - Chr4:79698577-79698596 MsG0480023014.01.T01:intron 25.0%
!! AAACATTTAAAATCTGCAAC+GGG + Chr4:79695091-79695110 None:intergenic 25.0%
!! AAACCTTTATCTGTTTGTTT+TGG - Chr4:79698078-79698097 MsG0480023014.01.T01:intron 25.0%
!! ATACTTGTGTTCTTTTTAAC+AGG - Chr4:79698888-79698907 MsG0480023014.01.T01:intron 25.0%
!! ATATTTTCGGTTGGATTTTA+AGG + Chr4:79693654-79693673 None:intergenic 25.0%
!! ATTAAAAAAAGGGGTTTTCT+AGG - Chr4:79698588-79698607 MsG0480023014.01.T01:intron 25.0%
!! CACTCATTGAGAATTTTATA+TGG - Chr4:79694511-79694530 MsG0480023014.01.T01:intron 25.0%
!! TAAGGAGATTGATGTTTTAT+GGG + Chr4:79696210-79696229 None:intergenic 25.0%
!! TTAAGGAGATTGATGTTTTA+TGG + Chr4:79696211-79696230 None:intergenic 25.0%
!!! AAACCCCTTTTTTTAATTTC+TGG + Chr4:79698585-79698604 None:intergenic 25.0%
!!! AACCCCTTTTTTTAATTTCT+GGG + Chr4:79698584-79698603 None:intergenic 25.0%
!!! ACCTTTTGCTGTTTATAAAT+TGG + Chr4:79698125-79698144 None:intergenic 25.0%
!!! CATATTTTGAAAATAGTCAC+GGG + Chr4:79694781-79694800 None:intergenic 25.0%
!!! CTTTTCTTCTGTATTTTTTG+TGG + Chr4:79695383-79695402 None:intergenic 25.0%
!!! GCTGATATTTTAAAATAGTC+AGG + Chr4:79695001-79695020 None:intergenic 25.0%
!!! GTTTTTTTTATAGTCCTTGT+GGG - Chr4:79697917-79697936 MsG0480023014.01.T01:intron 25.0%
!!! TGCATATTTTGAAATAGTCA+CGG + Chr4:79695179-79695198 None:intergenic 25.0%
!!! TGTTTTTTTTATAGTCCTTG+TGG - Chr4:79697916-79697935 MsG0480023014.01.T01:intron 25.0%
!!! TTGGATATTGATTTAGTTTG+CGG - Chr4:79698097-79698116 MsG0480023014.01.T01:intron 25.0%
AAAATAAACATATGCCGTGA+TGG + Chr4:79698282-79698301 None:intergenic 30.0%
AAACCCTGACAAAGTAAAAA+AGG + Chr4:79696120-79696139 None:intergenic 30.0%
AAATATGTCTATGTCCCTTA+TGG - Chr4:79698478-79698497 MsG0480023014.01.T01:intron 30.0%
AAGAAGATACTGCTATTGTT+AGG - Chr4:79696560-79696579 MsG0480023014.01.T01:intron 30.0%
AAGTACATAAAATCTGCAAC+GGG + Chr4:79694138-79694157 None:intergenic 30.0%
AATATAATCCTTACAACAGC+CGG + Chr4:79699125-79699144 None:intergenic 30.0%
AATATTATCAGTTCCAACAG+TGG + Chr4:79697406-79697425 None:intergenic 30.0%
AATGATTAAGGTCTATCTCT+TGG - Chr4:79698015-79698034 MsG0480023014.01.T01:intron 30.0%
AATTCAATGGATATGTTCGT+TGG - Chr4:79693291-79693310 MsG0480023014.01.T01:three_prime_UTR 30.0%
ACACAAGTATACATAGGATA+TGG + Chr4:79698878-79698897 None:intergenic 30.0%
AGAGTAAAGAGAAGAGATTA+TGG - Chr4:79693350-79693369 MsG0480023014.01.T01:three_prime_UTR 30.0%
ATAATCCATAGTTAGCTACA+TGG + Chr4:79698359-79698378 None:intergenic 30.0%
ATCGTATCGCAGTAAAATTA+AGG + Chr4:79696228-79696247 None:intergenic 30.0%
ATGCAGAAATACTATCACAA+GGG - Chr4:79697345-79697364 MsG0480023014.01.T01:intron 30.0%
ATGTTCTACTGAAGTTCATA+TGG - Chr4:79697694-79697713 MsG0480023014.01.T01:intron 30.0%
CTATTTCAAAATATGCAGTG+TGG - Chr4:79695182-79695201 MsG0480023014.01.T01:intron 30.0%
GAAATTAGGGTTTGAAGAAA+AGG - Chr4:79696320-79696339 MsG0480023014.01.T01:intron 30.0%
GAAGGTGAATAGCAAATAAT+AGG + Chr4:79696165-79696184 None:intergenic 30.0%
GAATTTAGAAGAACAAGATG+AGG - Chr4:79696714-79696733 MsG0480023014.01.T01:intron 30.0%
GAGTTAGAGAAAAAGATTGA+AGG + Chr4:79696183-79696202 None:intergenic 30.0%
GATAAAGCTAGCATTTCATA+TGG + Chr4:79698051-79698070 None:intergenic 30.0%
GATAAGCTTAGAGGTAAAAT+TGG - Chr4:79696411-79696430 MsG0480023014.01.T01:intron 30.0%
GGATCAATTAAGTCTTTCAT+CGG + Chr4:79693627-79693646 None:intergenic 30.0%
GTCCCAGAAATTAAAAAAAG+GGG - Chr4:79698579-79698598 MsG0480023014.01.T01:intron 30.0%
GTTAAATAGTTGAGTTACAC+CGG - Chr4:79693936-79693955 MsG0480023014.01.T01:intron 30.0%
TATAAAATCCTCAACAAGTG+TGG + Chr4:79694862-79694881 None:intergenic 30.0%
TATGCAGAAATACTATCACA+AGG - Chr4:79697344-79697363 MsG0480023014.01.T01:intron 30.0%
TCAGAAACATATTGAATTGG+AGG - Chr4:79697096-79697115 MsG0480023014.01.T01:intron 30.0%
TGATACAGTAATAGCTGTAA+GGG - Chr4:79696389-79696408 MsG0480023014.01.T01:intron 30.0%
TGTATTTATATCGGCATACA+CGG - Chr4:79694329-79694348 MsG0480023014.01.T01:intron 30.0%
TTTGGTCTAAACTGAAATCA+AGG - Chr4:79697780-79697799 MsG0480023014.01.T01:intron 30.0%
! AACAAGCCTTATATTCAATG+TGG - Chr4:79693550-79693569 MsG0480023014.01.T01:three_prime_UTR 30.0%
! ATATAGCGATTGTGACATTT+TGG - Chr4:79695938-79695957 MsG0480023014.01.T01:intron 30.0%
! CATTGAATATAAGGCTTGTT+TGG + Chr4:79693550-79693569 None:intergenic 30.0%
! TAGGATGCTAATTTTATACC+TGG - Chr4:79698607-79698626 MsG0480023014.01.T01:intron 30.0%
! TATTTAAACCACACTTGTTG+AGG - Chr4:79694851-79694870 MsG0480023014.01.T01:intron 30.0%
! TCTTTACTCTCACTTTCTTT+TGG + Chr4:79693340-79693359 None:intergenic 30.0%
!! CACTTGTTGAGGATTTTATA+TGG - Chr4:79694862-79694881 MsG0480023014.01.T01:intron 30.0%
!! TTTCAGACAAAAGAAGTACT+TGG + Chr4:79698461-79698480 None:intergenic 30.0%
!!! CAACCTTTTTTACTTTGTCA+GGG - Chr4:79696114-79696133 MsG0480023014.01.T01:intron 30.0%
!!! GCATATTTTGAAATAGTCAC+GGG + Chr4:79695178-79695197 None:intergenic 30.0%
!!! GTAGTGTGTCATTTTTATGA+GGG - Chr4:79694421-79694440 MsG0480023014.01.T01:intron 30.0%
!!! TCAACCTTTTTTACTTTGTC+AGG - Chr4:79696113-79696132 MsG0480023014.01.T01:intron 30.0%
!!! TGTAGTGTGTCATTTTTATG+AGG - Chr4:79694420-79694439 MsG0480023014.01.T01:intron 30.0%
!!! TTCTTCTGTATTTTTTGTGG+TGG + Chr4:79695380-79695399 None:intergenic 30.0%
AAACCTCAGGGTAAATCTAT+CGG + Chr4:79696088-79696107 None:intergenic 35.0%
AAGAACAATGTCTGTAACAG+CGG - Chr4:79696360-79696379 MsG0480023014.01.T01:intron 35.0%
AAGTCACTCAAATAACAACG+AGG + Chr4:79698419-79698438 None:intergenic 35.0%
AGCCAAGTATAATGAGAGAA+TGG - Chr4:79698710-79698729 MsG0480023014.01.T01:intron 35.0%
ATACCATGCAATCTTACTTC+AGG - Chr4:79698542-79698561 MsG0480023014.01.T01:intron 35.0%
ATGATCCATGTAGCTAACTA+TGG - Chr4:79698351-79698370 MsG0480023014.01.T01:intron 35.0%
ATGCATAATATATGCAGGTC+TGG - Chr4:79695340-79695359 MsG0480023014.01.T01:CDS 35.0%
CATCACGATTACATTGTTAC+CGG - Chr4:79699103-79699122 MsG0480023014.01.T01:CDS 35.0%
CTAAAGGAAGCAGAAATTGA+AGG - Chr4:79698760-79698779 MsG0480023014.01.T01:intron 35.0%
CTTCAATTTCTGCTTCCTTT+AGG + Chr4:79698762-79698781 None:intergenic 35.0%
GGACAATGCATAATATATGC+AGG - Chr4:79695335-79695354 MsG0480023014.01.T01:CDS 35.0%
GTGATACAGTAATAGCTGTA+AGG - Chr4:79696388-79696407 MsG0480023014.01.T01:intron 35.0%
TATAAAATCTTCAACGAGCG+CGG + Chr4:79695262-79695281 None:intergenic 35.0%
TCAACGCCACATTGAATATA+AGG + Chr4:79693559-79693578 None:intergenic 35.0%
TCAATCCTCAAAGCAGAAAA+TGG - Chr4:79697316-79697335 MsG0480023014.01.T01:intron 35.0%
TCCAGTAATCAACTATCCAA+AGG + Chr4:79698832-79698851 None:intergenic 35.0%
TCCTTTGGATAGTTGATTAC+TGG - Chr4:79698828-79698847 MsG0480023014.01.T01:intron 35.0%
TGAATAAACTGGGAGAAAGA+GGG - Chr4:79695983-79696002 MsG0480023014.01.T01:intron 35.0%
TGCCATTCTCTCATTATACT+TGG + Chr4:79698715-79698734 None:intergenic 35.0%
TGGTTTGACACTCATCAAAA+TGG - Chr4:79697714-79697733 MsG0480023014.01.T01:intron 35.0%
TTCAAGGGAAAGTGAACTTA+CGG + Chr4:79697576-79697595 None:intergenic 35.0%
TTGAATAAACTGGGAGAAAG+AGG - Chr4:79695982-79696001 MsG0480023014.01.T01:intron 35.0%
TTGTCATGCATTCTCATTGT+AGG - Chr4:79698177-79698196 MsG0480023014.01.T01:intron 35.0%
TTGTTAGGAAAGATGATCGT+AGG - Chr4:79696575-79696594 MsG0480023014.01.T01:intron 35.0%
! AACATTTGAAATGTGCAACG+TGG + Chr4:79694695-79694714 None:intergenic 35.0%
! AATCTCCATTTTCTGCTTTG+AGG + Chr4:79697324-79697343 None:intergenic 35.0%
! ACATTTGAAATGTGCAACGT+GGG + Chr4:79694694-79694713 None:intergenic 35.0%
! AGATTGTTGTTGAGGAGATT+CGG - Chr4:79697059-79697078 MsG0480023014.01.T01:intron 35.0%
! GAAATGGATTCACACATAGA+TGG - Chr4:79698307-79698326 MsG0480023014.01.T01:intron 35.0%
! GTAAAGAGAGAGCAATGTTT+TGG + Chr4:79697668-79697687 None:intergenic 35.0%
! TCATATCGACTATCGTGTAT+CGG + Chr4:79694564-79694583 None:intergenic 35.0%
! TTTGAGGATTGAGAAGGTTT+TGG + Chr4:79697308-79697327 None:intergenic 35.0%
!! CATTCTCATTGTAGGTTGAT+AGG - Chr4:79698185-79698204 MsG0480023014.01.T01:intron 35.0%
!! GAAACCAGCTTTAGCATTTT+AGG - Chr4:79698244-79698263 MsG0480023014.01.T01:intron 35.0%
!! GGATTGTTTCTACATTGAAG+AGG - Chr4:79696670-79696689 MsG0480023014.01.T01:intron 35.0%
!! GTATGATACTGATTCTGATG+AGG - Chr4:79696885-79696904 MsG0480023014.01.T01:intron 35.0%
!! TTAACACTGATTTGCAATGC+AGG - Chr4:79698664-79698683 MsG0480023014.01.T01:intron 35.0%
!! TTGTTTCTACATTGAAGAGG+AGG - Chr4:79696673-79696692 MsG0480023014.01.T01:intron 35.0%
!!! CATCGGCTTATTTTAACCAT+TGG + Chr4:79693610-79693629 None:intergenic 35.0%
!!! TCTGTATTTTTTGTGGTGGT+CGG + Chr4:79695376-79695395 None:intergenic 35.0%
AAAGAGAAGAGATTATGGCC+CGG - Chr4:79693355-79693374 MsG0480023014.01.T01:three_prime_UTR 40.0%
AAAGTGAATCGTTATTGGCC+TGG - Chr4:79696441-79696460 MsG0480023014.01.T01:intron 40.0%
AACAAGATGAGGGATTGCTA+GGG - Chr4:79696725-79696744 MsG0480023014.01.T01:intron 40.0%
AAGGAAAAGAAGAGGTTGAG+AGG - Chr4:79697234-79697253 MsG0480023014.01.T01:intron 40.0%
AAGGAAGTCATAGTCCTAAC+TGG + Chr4:79699070-79699089 None:intergenic 40.0%
AGGAAAAGAAGAGGTTGAGA+GGG - Chr4:79697235-79697254 MsG0480023014.01.T01:intron 40.0%
AGGATATGAAGACGACTAAG+TGG - Chr4:79697833-79697852 MsG0480023014.01.T01:intron 40.0%
ATCGAGCACAGTTTATGCAT+TGG - Chr4:79698956-79698975 MsG0480023014.01.T01:intron 40.0%
ATTGTATCTCTCTCCGACTT+TGG + Chr4:79696950-79696969 None:intergenic 40.0%
CACTGTTGAAGGAAAAGAAG+AGG - Chr4:79697226-79697245 MsG0480023014.01.T01:intron 40.0%
CATAAAATTTGCAACGGGTG+CGG + Chr4:79694311-79694330 None:intergenic 40.0%
CCTATCGGATCTAATATCAC+CGG + Chr4:79696507-79696526 None:intergenic 40.0%
CGGTGATATTAGATCCGATA+GGG - Chr4:79696505-79696524 MsG0480023014.01.T01:intron 40.0%
GAAGAATAAGCAGATGAGCT+AGG + Chr4:79698990-79699009 None:intergenic 40.0%
GCTGTGAAGTTAAGAGAGTA+TGG - Chr4:79697959-79697978 MsG0480023014.01.T01:intron 40.0%
GGAAGCAGAAATTGAAGGAT+TGG - Chr4:79698765-79698784 MsG0480023014.01.T01:intron 40.0%
GGGAGGATCATAGAAGAATT+CGG - Chr4:79696641-79696660 MsG0480023014.01.T01:intron 40.0%
GTTATGCAAGTCAAGCACTT+GGG - Chr4:79697489-79697508 MsG0480023014.01.T01:intron 40.0%
TCAAGGGAAAGTGAACTTAC+GGG + Chr4:79697575-79697594 None:intergenic 40.0%
TGACACTCATCAAAATGGTC+TGG - Chr4:79697719-79697738 MsG0480023014.01.T01:intron 40.0%
TGAGAATGCATGACAAACTC+TGG + Chr4:79698173-79698192 None:intergenic 40.0%
TGAGCTTAACTCAGTTGGTT+GGG - Chr4:79695314-79695333 MsG0480023014.01.T01:CDS 40.0%
TTAAAATCTGCAACGGGAGA+AGG + Chr4:79695085-79695104 None:intergenic 40.0%
TTTGCCTATATGATGCCACT+AGG - Chr4:79699148-79699167 MsG0480023014.01.T01:CDS 40.0%
! AACGAGGTTAGTTAGCTACA+TGG + Chr4:79698403-79698422 None:intergenic 40.0%
! CTTGTCCATTTTATCTTCCC+CGG + Chr4:79697454-79697473 None:intergenic 40.0%
! TCATATCGACTATCGTGCAT+CGG + Chr4:79694916-79694935 None:intergenic 40.0%
! TCATTATACTTGGCTCGAAG+TGG + Chr4:79698705-79698724 None:intergenic 40.0%
!! AAAAGACAGGTTCTAGTTCG+CGG - Chr4:79696024-79696043 MsG0480023014.01.T01:CDS 40.0%
!! CCTGTGTTTTGTTCCAAAGT+CGG - Chr4:79696934-79696953 MsG0480023014.01.T01:intron 40.0%
!! GCTTCGTATTGATTGAGAGT+AGG - Chr4:79696597-79696616 MsG0480023014.01.T01:intron 40.0%
!! TGCTTGACTTGCATAACCTT+GGG + Chr4:79697486-79697505 None:intergenic 40.0%
!! TTCTGCTTTGAGGATTGAGA+AGG + Chr4:79697314-79697333 None:intergenic 40.0%
!!! CTGTATTTTTTGTGGTGGTC+GGG + Chr4:79695375-79695394 None:intergenic 40.0%
!!! GGTCTATCTCTTGGTGTTTT+TGG - Chr4:79698024-79698043 MsG0480023014.01.T01:intron 40.0%
!!! TCGGTTGGATTTTAAGGTGA+GGG + Chr4:79693648-79693667 None:intergenic 40.0%
!!! TGTATTTTTTGTGGTGGTCG+GGG + Chr4:79695374-79695393 None:intergenic 40.0%
!!! TTCGGTTGGATTTTAAGGTG+AGG + Chr4:79693649-79693668 None:intergenic 40.0%
AAGAACTAAGTGGTCCCATC+TGG - Chr4:79697521-79697540 MsG0480023014.01.T01:intron 45.0%
AAGGAGATCGAAGATGCATC+CGG - Chr4:79696485-79696504 MsG0480023014.01.T01:intron 45.0%
AAGGTTGAAGAGCAAACCTC+AGG + Chr4:79696101-79696120 None:intergenic 45.0%
AATGGATATGTTCGTTGGCG+AGG - Chr4:79693296-79693315 MsG0480023014.01.T01:three_prime_UTR 45.0%
ACAAGATGAGGGATTGCTAG+GGG - Chr4:79696726-79696745 MsG0480023014.01.T01:intron 45.0%
ACAGATACCGTGAGGAAGTT+AGG - Chr4:79696620-79696639 MsG0480023014.01.T01:intron 45.0%
ACCAACCGGGGAAGATAAAA+TGG - Chr4:79697446-79697465 MsG0480023014.01.T01:intron 45.0%
AGAGATTGGTAGGATCAAGC+GGG - Chr4:79697186-79697205 MsG0480023014.01.T01:intron 45.0%
AGGCAGAGGAATATGAAGCT+TGG - Chr4:79697155-79697174 MsG0480023014.01.T01:intron 45.0%
AGGTTGAAGAGCAAACCTCA+GGG + Chr4:79696100-79696119 None:intergenic 45.0%
ATCCAAAGCAGCTTCCCTAT+CGG + Chr4:79696522-79696541 None:intergenic 45.0%
ATTGCTGATGTGGACACTGA+TGG - Chr4:79697124-79697143 MsG0480023014.01.T01:intron 45.0%
CAGATACCGTGAGGAAGTTA+GGG - Chr4:79696621-79696640 MsG0480023014.01.T01:intron 45.0%
CATAAAATCTGCAACGGGTG+CGG + Chr4:79694133-79694152 None:intergenic 45.0%
CCGGTGATATTAGATCCGAT+AGG - Chr4:79696504-79696523 MsG0480023014.01.T01:intron 45.0%
CTCGGTCATCAGAATTAGAC+TGG + Chr4:79697380-79697399 None:intergenic 45.0%
CTTCCTTTAGGCTTCGCTAT+AGG + Chr4:79698750-79698769 None:intergenic 45.0%
GAACAAGATGAGGGATTGCT+AGG - Chr4:79696724-79696743 MsG0480023014.01.T01:intron 45.0%
GAGAGATTGGTAGGATCAAG+CGG - Chr4:79697185-79697204 MsG0480023014.01.T01:intron 45.0%
GCAGTATCTTCTTCATGACG+AGG + Chr4:79696553-79696572 None:intergenic 45.0%
GCTGCCTAAAATGCTAAAGC+TGG + Chr4:79698251-79698270 None:intergenic 45.0%
GCTGTAAGGGATAAGCTTAG+AGG - Chr4:79696402-79696421 MsG0480023014.01.T01:intron 45.0%
GCTTGGAAAGTGAGAGAGAT+TGG - Chr4:79697172-79697191 MsG0480023014.01.T01:intron 45.0%
GGAAAGTGAGAGAGATTGGT+AGG - Chr4:79697176-79697195 MsG0480023014.01.T01:intron 45.0%
GGATCATAGAAGAATTCGGC+AGG - Chr4:79696645-79696664 MsG0480023014.01.T01:intron 45.0%
GGTCCTGAAGTAAGATTGCA+TGG + Chr4:79698548-79698567 None:intergenic 45.0%
GGTTATGCAAGTCAAGCACT+TGG - Chr4:79697488-79697507 MsG0480023014.01.T01:intron 45.0%
GTGAGCTTAACTCAGTTGGT+TGG - Chr4:79695313-79695332 MsG0480023014.01.T01:CDS 45.0%
GTGATGAGTGATGACATGCA+AGG + Chr4:79699089-79699108 None:intergenic 45.0%
TCAACGAGGACACTACTGAT+TGG - Chr4:79697544-79697563 MsG0480023014.01.T01:intron 45.0%
TGTTGTTGAGGAGATTCGGA+AGG - Chr4:79697063-79697082 MsG0480023014.01.T01:intron 45.0%
TTCATATTCCTCTGCCTCGT+TGG + Chr4:79697152-79697171 None:intergenic 45.0%
TTGAAATGTGCAACGTGGGA+AGG + Chr4:79694690-79694709 None:intergenic 45.0%
TTGGCTTAAGCATGCTGCTA+TGG - Chr4:79698930-79698949 MsG0480023014.01.T01:intron 45.0%
! CATTGTTACCGGCTGTTGTA+AGG - Chr4:79699114-79699133 MsG0480023014.01.T01:CDS 45.0%
! GATTCTGATGAGGAGTACAC+TGG - Chr4:79696895-79696914 MsG0480023014.01.T01:intron 45.0%
! TCCATTTTATCTTCCCCGGT+TGG + Chr4:79697450-79697469 None:intergenic 45.0%
!! ACACTGATTTGCAATGCAGG+TGG - Chr4:79698667-79698686 MsG0480023014.01.T01:intron 45.0%
!! CCGACTTTGGAACAAAACAC+AGG + Chr4:79696937-79696956 None:intergenic 45.0%
!! GGAGAGAAGAAGACGGATTA+AGG - Chr4:79696774-79696793 MsG0480023014.01.T01:intron 45.0%
!! GTGCTTGACTTGCATAACCT+TGG + Chr4:79697487-79697506 None:intergenic 45.0%
!! TGTATTAAAAAAAATATATA+CGG + Chr4:79695803-79695822 None:intergenic 5.0%
!!! TTTTTAAATTTTTATCATAT+CGG + Chr4:79694758-79694777 None:intergenic 5.0%
AAAAGACCCGTGCTTTCGCA+CGG - Chr4:79693752-79693771 MsG0480023014.01.T01:intron 50.0%
AAGAAGAGGTTGAGAGGGTG+AGG - Chr4:79697240-79697259 MsG0480023014.01.T01:intron 50.0%
AAGATGAGGGATTGCTAGGG+GGG - Chr4:79696728-79696747 MsG0480023014.01.T01:intron 50.0%
AGAGGAGGAAGAAGAAGAGG+AGG - Chr4:79696852-79696871 MsG0480023014.01.T01:intron 50.0%
AGAGTAGGACAGATACCGTG+AGG - Chr4:79696612-79696631 MsG0480023014.01.T01:intron 50.0%
AGCAAGGAAGAGGAGAATGG+AGG - Chr4:79697015-79697034 MsG0480023014.01.T01:intron 50.0%
AGGAGAGGAGAAATGAGACG+AGG - Chr4:79697035-79697054 MsG0480023014.01.T01:intron 50.0%
AGGATATGGCATAGCCAGTG+TGG + Chr4:79698864-79698883 None:intergenic 50.0%
AGTGTCCTCGTTGACCAGAT+GGG + Chr4:79697538-79697557 None:intergenic 50.0%
ATACCGTGAGGAAGTTAGGG+AGG - Chr4:79696624-79696643 MsG0480023014.01.T01:intron 50.0%
ATCCGATAGGGAAGCTGCTT+TGG - Chr4:79696517-79696536 MsG0480023014.01.T01:intron 50.0%
CAAGATGAGGGATTGCTAGG+GGG - Chr4:79696727-79696746 MsG0480023014.01.T01:intron 50.0%
CATAGAAGAATTCGGCAGGC+TGG - Chr4:79696649-79696668 MsG0480023014.01.T01:intron 50.0%
CCAACTGAGTTAAGCTCACG+AGG + Chr4:79695312-79695331 None:intergenic 50.0%
CCTCAGGGTAAATCTATCGG+CGG + Chr4:79696085-79696104 None:intergenic 50.0%
CCTCGTGAGCTTAACTCAGT+TGG - Chr4:79695309-79695328 MsG0480023014.01.T01:CDS 50.0%
CGATCTCCTTATCAGCCCAT+CGG + Chr4:79696475-79696494 None:intergenic 50.0%
CTCTTGAGGAAGCAAGGAAG+AGG - Chr4:79697005-79697024 MsG0480023014.01.T01:intron 50.0%
CTGCTCGAGGAGAAAAAGAC+AGG - Chr4:79696011-79696030 MsG0480023014.01.T01:CDS 50.0%
CTGGAAAGACTAGACCACAC+TGG - Chr4:79698847-79698866 MsG0480023014.01.T01:intron 50.0%
GAAGTTGCGTCAGAGAGATC+AGG - Chr4:79696798-79696817 MsG0480023014.01.T01:intron 50.0%
GAGGAGAAGAGATGCTATGG+CGG - Chr4:79696753-79696772 MsG0480023014.01.T01:intron 50.0%
GATCCTCCCTAACTTCCTCA+CGG + Chr4:79696630-79696649 None:intergenic 50.0%
GATCTCCTTATCAGCCCATC+GGG + Chr4:79696474-79696493 None:intergenic 50.0%
GGAAGAGGAGGAAGAAGAAG+AGG - Chr4:79696849-79696868 MsG0480023014.01.T01:intron 50.0%
GGAAGCAAGGAAGAGGAGAA+TGG - Chr4:79697012-79697031 MsG0480023014.01.T01:intron 50.0%
GGACAAGACAATACTGCCCA+AGG - Chr4:79697467-79697486 MsG0480023014.01.T01:intron 50.0%
GGAGAGGAGAAGAGATGCTA+TGG - Chr4:79696750-79696769 MsG0480023014.01.T01:intron 50.0%
GGAGGCGAATATTGCTGATG+TGG - Chr4:79697114-79697133 MsG0480023014.01.T01:intron 50.0%
GGAGTACACTGGAGTAGCTA+TGG - Chr4:79696906-79696925 MsG0480023014.01.T01:intron 50.0%
GGTGCGGTGCAAACATTGAA+CGG + Chr4:79694117-79694136 None:intergenic 50.0%
GTCGCAGTGGAAGAACTAAG+TGG - Chr4:79697511-79697530 MsG0480023014.01.T01:intron 50.0%
TAGTGTCCTCGTTGACCAGA+TGG + Chr4:79697539-79697558 None:intergenic 50.0%
TGGTAGGATCAAGCGGGATA+GGG - Chr4:79697192-79697211 MsG0480023014.01.T01:intron 50.0%
TTGGTAGGATCAAGCGGGAT+AGG - Chr4:79697191-79697210 MsG0480023014.01.T01:intron 50.0%
! CTATGGCGGAGAGAAGAAGA+CGG - Chr4:79696767-79696786 MsG0480023014.01.T01:intron 50.0%
! GACGAGGCAGATTGTTGTTG+AGG - Chr4:79697051-79697070 MsG0480023014.01.T01:intron 50.0%
!! TTTCTGGGACAAGACGAGAG+TGG + Chr4:79698569-79698588 None:intergenic 50.0%
AAAGACCCGTGCTTTCGCAC+GGG - Chr4:79693753-79693772 MsG0480023014.01.T01:intron 55.0%
AGATGAGGGATTGCTAGGGG+GGG - Chr4:79696729-79696748 MsG0480023014.01.T01:intron 55.0%
AGCTGAAGAGGAGGCTCTTG+AGG - Chr4:79696991-79697010 MsG0480023014.01.T01:intron 55.0%
AGGAGGCTCTTGAGGAAGCA+AGG - Chr4:79696999-79697018 MsG0480023014.01.T01:intron 55.0%
ATTGAAGAGGAGGCGAGAGC+AGG - Chr4:79696683-79696702 MsG0480023014.01.T01:intron 55.0%
CAGTTCCAACAGTGGCAGCT+CGG + Chr4:79697398-79697417 None:intergenic 55.0%
CCGCCGATAGATTTACCCTG+AGG - Chr4:79696082-79696101 MsG0480023014.01.T01:CDS 55.0%
CGATTTCTCTGCACCAACCG+GGG - Chr4:79697434-79697453 MsG0480023014.01.T01:intron 55.0%
CGCGATTTCTCTGCACCAAC+CGG - Chr4:79697432-79697451 MsG0480023014.01.T01:intron 55.0%
GAGGGTGAGGAACATGACAG+AGG - Chr4:79697253-79697272 MsG0480023014.01.T01:intron 55.0%
GCGATTTCTCTGCACCAACC+GGG - Chr4:79697433-79697452 MsG0480023014.01.T01:intron 55.0%
GCGCCTATAGCGAAGCCTAA+AGG - Chr4:79698744-79698763 MsG0480023014.01.T01:intron 55.0%
GGAAGAGGAGAATGGAGGAG+AGG - Chr4:79697020-79697039 MsG0480023014.01.T01:intron 55.0%
GGACACTGATGGAACCAACG+AGG - Chr4:79697135-79697154 MsG0480023014.01.T01:intron 55.0%
GGAGGAAGAAGAAGAGGAGG+AGG - Chr4:79696855-79696874 MsG0480023014.01.T01:intron 55.0%
GGTGAGGAACATGACAGAGG+AGG - Chr4:79697256-79697275 MsG0480023014.01.T01:intron 55.0%
GTTGCGTCAGAGAGATCAGG+AGG - Chr4:79696801-79696820 MsG0480023014.01.T01:intron 55.0%
TAGGATCAAGCGGGATAGGG+AGG - Chr4:79697195-79697214 MsG0480023014.01.T01:intron 55.0%
TCAGGAAGAGGAGGAGGAAG+AGG - Chr4:79696834-79696853 MsG0480023014.01.T01:intron 55.0%
TCTATCGGCGGCAACGAAGA+CGG + Chr4:79696073-79696092 None:intergenic 55.0%
TCTTCCTCCTCCTCTTCCTG+AGG + Chr4:79696835-79696854 None:intergenic 55.0%
TGAGCGTCTCGAAGCTGAAG+AGG - Chr4:79696979-79696998 MsG0480023014.01.T01:intron 55.0%
TGATGGAACCAACGAGGCAG+AGG - Chr4:79697141-79697160 MsG0480023014.01.T01:intron 55.0%
! GGCAGCATTTGCTGCCATCA+CGG - Chr4:79698265-79698284 MsG0480023014.01.T01:intron 55.0%
!! AAGCTCCCGATGGGCTGATA+AGG - Chr4:79696466-79696485 MsG0480023014.01.T01:intron 55.0%
!! AGGACGTGAGGCACTGTTGA+AGG - Chr4:79697215-79697234 MsG0480023014.01.T01:intron 55.0%
AAAGAGGGTGACGCTGCTCG+AGG - Chr4:79695998-79696017 MsG0480023014.01.T01:CDS 60.0%
AAGAGGAGGCGAGAGCAGGA+AGG - Chr4:79696687-79696706 MsG0480023014.01.T01:intron 60.0%
AGAGGAGGCGAGAGCAGGAA+GGG - Chr4:79696688-79696707 MsG0480023014.01.T01:intron 60.0%
AGCCCATCGGGAGCTTTACC+AGG + Chr4:79696462-79696481 None:intergenic 60.0%
AGCGCTTCCTCAGGAAGAGG+AGG - Chr4:79696825-79696844 MsG0480023014.01.T01:intron 60.0%
GATGACCGAGCTGCCACTGT+TGG - Chr4:79697390-79697409 MsG0480023014.01.T01:intron 60.0%
GCGTCTCGAAGCTGAAGAGG+AGG - Chr4:79696982-79697001 MsG0480023014.01.T01:intron 60.0%
GCTTCCTCAGGAAGAGGAGG+AGG - Chr4:79696828-79696847 MsG0480023014.01.T01:intron 60.0%
GGAAGAGGAGGAGGAAGAGG+AGG - Chr4:79696837-79696856 MsG0480023014.01.T01:intron 60.0%
GGCCTGGTAAAGCTCCCGAT+GGG - Chr4:79696457-79696476 MsG0480023014.01.T01:intron 60.0%
GTCAAGCACTTGGGTCGCAG+TGG - Chr4:79697498-79697517 MsG0480023014.01.T01:intron 60.0%
GTGGTCCCATCTGGTCAACG+AGG - Chr4:79697530-79697549 MsG0480023014.01.T01:intron 60.0%
TGGCCTGGTAAAGCTCCCGA+TGG - Chr4:79696456-79696475 MsG0480023014.01.T01:intron 60.0%
!! GGAAGCGCTTCCTCAGGAAG+AGG - Chr4:79696822-79696841 MsG0480023014.01.T01:intron 60.0%
!! TCAGGAGGAAGCGCTTCCTC+AGG - Chr4:79696816-79696835 MsG0480023014.01.T01:intron 60.0%
AACGAAGACGGTGGTGCGGC+GGG + Chr4:79696061-79696080 None:intergenic 65.0%
ACGCGACCCGTGCGAAAGCA+CGG + Chr4:79693762-79693781 None:intergenic 65.0%
AGCGGGATAGGGAGGACGTG+AGG - Chr4:79697203-79697222 MsG0480023014.01.T01:intron 65.0%
AGGGATTGCTAGGGGGGGAG+AGG - Chr4:79696734-79696753 MsG0480023014.01.T01:intron 65.0%
ATCGGCGGCAACGAAGACGG+TGG + Chr4:79696070-79696089 None:intergenic 65.0%
CAACGAAGACGGTGGTGCGG+CGG + Chr4:79696062-79696081 None:intergenic 65.0%
CGGCAACGAAGACGGTGGTG+CGG + Chr4:79696065-79696084 None:intergenic 65.0%
GAGGCGAGAGCAGGAAGGGT+TGG - Chr4:79696692-79696711 MsG0480023014.01.T01:intron 65.0%
ACGAAGACGGTGGTGCGGCG+GGG + Chr4:79696060-79696079 None:intergenic 70.0%
! CGCGACCCGTGCGAAAGCAC+GGG + Chr4:79693761-79693780 None:intergenic 70.0%
AGACGGTGGTGCGGCGGGGT+TGG + Chr4:79696056-79696075 None:intergenic 75.0%
! GGTGGTGCGGCGGGGTTGGT+CGG + Chr4:79696052-79696071 None:intergenic 75.0%
!! GTGGTGCGGCGGGGTTGGTC+GGG + Chr4:79696051-79696070 None:intergenic 75.0%
!! TGGTGCGGCGGGGTTGGTCG+GGG + Chr4:79696050-79696069 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 79693281 79699167 79693281 ID=MsG0480023014.01;Name=MsG0480023014.01
Chr4 mRNA 79693281 79699167 79693281 ID=MsG0480023014.01.T01;Parent=MsG0480023014.01;Name=MsG0480023014.01.T01;_AED=0.21;_eAED=0.21;_QI=0|0.2|0.16|0.83|1|1|6|388|332
Chr4 exon 79693281 79693762 79693281 ID=MsG0480023014.01.T01:exon:6151;Parent=MsG0480023014.01.T01
Chr4 exon 79694874 79695067 79694874 ID=MsG0480023014.01.T01:exon:6150;Parent=MsG0480023014.01.T01
Chr4 exon 79695229 79695487 79695229 ID=MsG0480023014.01.T01:exon:6149;Parent=MsG0480023014.01.T01
Chr4 exon 79695564 79695756 79695564 ID=MsG0480023014.01.T01:exon:6148;Parent=MsG0480023014.01.T01
Chr4 exon 79695986 79696120 79695986 ID=MsG0480023014.01.T01:exon:6147;Parent=MsG0480023014.01.T01
Chr4 exon 79699044 79699167 79699044 ID=MsG0480023014.01.T01:exon:6146;Parent=MsG0480023014.01.T01
Chr4 CDS 79699044 79699167 79699044 ID=MsG0480023014.01.T01:cds;Parent=MsG0480023014.01.T01
Chr4 CDS 79695986 79696120 79695986 ID=MsG0480023014.01.T01:cds;Parent=MsG0480023014.01.T01
Chr4 CDS 79695564 79695756 79695564 ID=MsG0480023014.01.T01:cds;Parent=MsG0480023014.01.T01
Chr4 CDS 79695229 79695487 79695229 ID=MsG0480023014.01.T01:cds;Parent=MsG0480023014.01.T01
Chr4 CDS 79694874 79695067 79694874 ID=MsG0480023014.01.T01:cds;Parent=MsG0480023014.01.T01
Chr4 CDS 79693669 79693762 79693669 ID=MsG0480023014.01.T01:cds;Parent=MsG0480023014.01.T01
Chr4 three_prime_UTR 79693281 79693668 79693281 ID=MsG0480023014.01.T01:three_prime_utr;Parent=MsG0480023014.01.T01
Gene Sequence

>MsG0480023014.01.T01

ATGAAGGTTGAATTCAATGGATATGTTCGTTGGCGAGGTACAGAAGTTCATAACAACCAAAAGAAAGTGAGAGTAAAGAGAAGAGATTATGGCCCGGTTTTGATTGAACTTATTTTGAGTTTATGGTTTGAAGAAAAGGAATTGTTGAATTTGTGGAAGAACAATGTCTGTAACAGCGGTGTCAGTGATACAGTAATAGCTGTAAGGGATAAGCTTAGAGGTAAAATTGGACAAACAAAAGTGAATCGTTATTGGCCTGGAGGCGAGAGCAGGAAGGGTTGGAATTTAGAAGAACAAGATGAGGGATTGCTAGGGGGGGAGAGGAGAAGAGATGCTATGGCGGAGAGAAGAAGACGGATTAAGGAGAAGTTGCGTCAGAGAGATCAGGAGGAAGCGCTTCCTCAGGAAGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAGGAGGAGTCTGAAGATACAATTGCTGAGCGTGAGCGTCTCGAAGCTGAAGAGGAGGCTCTTGAGGAAGCAAGGAAGAGGAGAATGGAGGAGAGGAGAAATGAGACGAGGCAGATTGTTGTTGAGGAGATTCGGAAGGATGAAGAAATTCAGAAACATATTGAATTGGAGGCGAATATTGCTGATGTGGACACTGATGGAACCAACGAGGCAGAGGAATATGAAGCTTGGAAAGTGAGAGAGATTGGTAGGATCAAGCGGGATAGGGAGGACTCTAATTCTGATGACCGAGCTGCCACTGTTGGAACTGATAATATTTTCACACGCGATTTCTCTGCACCAACCGGGGAAGATAAAATGGACAAGACAATACTGCCCAAGGTTATGCAAGTCAAGCACTTGGGTCGCAGTGGAAGAACTAAGTGGTCCCATCTGGTCAACGAGGACACTACTGATTGGAACAACCCGTGGACTTACAATGATCCACTTCGAGCCAAGTATAATGAGAGAATGGCAGCAATGAACGCGCCTATAGCGAAGCCTAAAGGAAGCAGAAATTGA

Protein sequence

>MsG0480023014.01.T01

MKVEFNGYVRWRGTEVHNNQKKVRVKRRDYGPVLIELILSLWFEEKELLNLWKNNVCNSGVSDTVIAVRDKLRGKIGQTKVNRYWPGGESRKGWNLEEQDEGLLGGERRRDAMAERRRRIKEKLRQRDQEEALPQEEEEEEEEEEEEEESEDTIAERERLEAEEEALEEARKRRMEERRNETRQIVVEEIRKDEEIQKHIELEANIADVDTDGTNEAEEYEAWKVREIGRIKRDREDSNSDDRAATVGTDNIFTRDFSAPTGEDKMDKTILPKVMQVKHLGRSGRTKWSHLVNEDTTDWNNPWTYNDPLRAKYNERMAAMNAPIAKPKGSRN*