AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003627.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003627.01.T02 MTR_1g067020 99.723 361 0 1 1 360 1 361 0.0 732
MsG0180003627.01.T02 MTR_6g078970 50.000 120 18 3 184 303 5 82 1.58e-23 94.0
MsG0180003627.01.T01 MTR_1g067020 99.723 361 0 1 1 360 1 361 0.0 732
MsG0180003627.01.T01 MTR_6g078970 50.000 120 18 3 184 303 5 82 1.58e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003627.01.T02 AT2G20280 72.776 371 88 6 1 360 1 369 3.70e-160 453
MsG0180003627.01.T01 AT2G20280 72.776 371 88 6 1 360 1 369 3.70e-160 453

Find 30 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAGAAGCTTACGGAAATT+TGG 0.212504 1:+65396295 None:intergenic
TTCAACAACCTTCTGCTTCT+TGG 0.227516 1:+65396067 None:intergenic
TTAGATTAGGGTTTGTGTTT+TGG 0.233492 1:+65396270 None:intergenic
ATCTTGTTTGGGATCGGTTC+TGG 0.237299 1:+65395962 None:intergenic
TAATACCTTTGCATCTTGTT+TGG 0.261505 1:+65395950 None:intergenic
GCCAGTGTTTGGGTTAGATT+AGG 0.279832 1:+65396257 None:intergenic
CCAGTGTTTGGGTTAGATTA+GGG 0.305397 1:+65396258 None:intergenic
ACTGCACGTCACTTGTGTTT+GGG 0.321572 1:+65396344 None:intergenic
CACTGCACGTCACTTGTGTT+TGG 0.341260 1:+65396343 None:intergenic
AATACCTTTGCATCTTGTTT+GGG 0.345954 1:+65395951 None:intergenic
GTTGTTGAAGACAAAACTTT+TGG 0.358058 1:-65396053 MsG0180003627.01.T01:CDS
GTGTACCTGGTGCCAGTGTT+TGG 0.365398 1:+65396246 None:intergenic
GTGTGATTGAAGGGGTATAT+CGG 0.370307 1:-65396323 MsG0180003627.01.T02:five_prime_UTR
TGTACCTGGTGCCAGTGTTT+GGG 0.397179 1:+65396247 None:intergenic
TCTTGTTTGGGATCGGTTCT+GGG 0.408315 1:+65395963 None:intergenic
ACATCAGCTTTCGATTGCTT+CGG 0.413453 1:+65396092 None:intergenic
CTTTGCATCTTGTTTGGGAT+CGG 0.453264 1:+65395956 None:intergenic
GGGATCGGTTCTGGGTTGAA+CGG 0.484565 1:+65395971 None:intergenic
TGTGATTGAAGGGGTATATC+GGG 0.499449 1:-65396322 MsG0180003627.01.T02:five_prime_UTR
TTGAATTGAATCAATTACTA+CGG 0.513438 1:-65396166 MsG0180003627.01.T01:intron
TCAGCTTTCGATTGCTTCGG+AGG 0.547932 1:+65396095 None:intergenic
GCTTCGGAGGCATCTCGTAT+CGG 0.548418 1:+65396108 None:intergenic
GTGACGTGCAGTGTGATTGA+AGG 0.567133 1:-65396333 MsG0180003627.01.T02:five_prime_UTR
CCCTAATCTAACCCAAACAC+TGG 0.579001 1:-65396258 MsG0180003627.01.T01:five_prime_UTR
ATCGGTTCTGGGTTGAACGG+AGG 0.580401 1:+65395974 None:intergenic
CTAACCCAAACACTGGCACC+AGG 0.591263 1:-65396251 MsG0180003627.01.T01:intron
CGATCCCAAACAAGATGCAA+AGG 0.603297 1:-65395955 MsG0180003627.01.T01:intron
TGACGTGCAGTGTGATTGAA+GGG 0.605647 1:-65396332 MsG0180003627.01.T02:five_prime_UTR
TGATGTAGCCAAGAAGCAGA+AGG 0.627538 1:-65396075 MsG0180003627.01.T01:CDS
GACGTGCAGTGTGATTGAAG+GGG 0.780978 1:-65396331 MsG0180003627.01.T02:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAGAGAGA+AGG + Chr1:65395362-65395381 None:intergenic 15.0%
!! TAATCTACAATAAAAGAATA+TGG + Chr1:65391850-65391869 None:intergenic 15.0%
!! TTATTGTAGATTATTCAAAT+GGG - Chr1:65391857-65391876 MsG0180003627.01.T01:three_prime_UTR 15.0%
!! TTTAAAAAACTCACATAATA+CGG + Chr1:65392791-65392810 None:intergenic 15.0%
!! TTTATTGTAGATTATTCAAA+TGG - Chr1:65391856-65391875 MsG0180003627.01.T01:three_prime_UTR 15.0%
!!! TAATATATCTGAATTTTGTT+AGG - Chr1:65392751-65392770 MsG0180003627.01.T01:intron 15.0%
!!! TTTTTAAAGTGTATTACAAA+TGG - Chr1:65393792-65393811 MsG0180003627.01.T01:CDS 15.0%
!!! TTTTTTTTACTCATAACAAA+TGG - Chr1:65394340-65394359 MsG0180003627.01.T01:CDS 15.0%
!! AAAACCAAAAAGTAAGAAAA+AGG + Chr1:65392964-65392983 None:intergenic 20.0%
!! AAATTTAACAGTTGCAAATT+TGG - Chr1:65394087-65394106 MsG0180003627.01.T01:intron 20.0%
!! AATAAAAGAGGAAAATGATT+TGG + Chr1:65395247-65395266 None:intergenic 20.0%
!! AGTTAGGAAAACAAAATATA+TGG + Chr1:65395561-65395580 None:intergenic 20.0%
!! ATAAATCATACAATATCTGT+TGG + Chr1:65393080-65393099 None:intergenic 20.0%
!! ATATACTATAACACATCTTT+AGG - Chr1:65395070-65395089 MsG0180003627.01.T01:intron 20.0%
!! GAAACTCAATAACAAAAATT+AGG + Chr1:65396052-65396071 None:intergenic 20.0%
!! GTATGATTTATTAGATTTGT+TGG - Chr1:65393089-65393108 MsG0180003627.01.T01:intron 20.0%
!! TTCTAACATATTATGTAACA+TGG - Chr1:65393520-65393539 MsG0180003627.01.T01:intron 20.0%
!! TTGAATTGAATCAATTACTA+CGG - Chr1:65391583-65391602 MsG0180003627.01.T01:three_prime_UTR 20.0%
!! TTTATTCTTGCTTATTCAAA+TGG - Chr1:65393218-65393237 MsG0180003627.01.T01:intron 20.0%
!! TTTGGGAGAAAAAATTTAAA+GGG + Chr1:65395324-65395343 None:intergenic 20.0%
!!! ACATCTCTTTGTAATTTTAA+TGG - Chr1:65394000-65394019 MsG0180003627.01.T01:intron 20.0%
!!! AGTAAAAAAAACATTTGCTA+TGG + Chr1:65394331-65394350 None:intergenic 20.0%
!!! AGTTTTTGAAATTCAATTGA+AGG + Chr1:65395434-65395453 None:intergenic 20.0%
!!! ATTATATAGATTTTTCAACC+GGG - Chr1:65392094-65392113 MsG0180003627.01.T01:CDS 20.0%
!!! ATTATGTGAGTTTTTTAAAG+TGG - Chr1:65392792-65392811 MsG0180003627.01.T01:intron 20.0%
!!! ATTTTTTTCTGTAGTTCAAT+GGG - Chr1:65392701-65392720 MsG0180003627.01.T01:intron 20.0%
!!! CATTATATAGATTTTTCAAC+CGG - Chr1:65392093-65392112 MsG0180003627.01.T01:CDS 20.0%
!!! CTTTTTGCATATAAAAAGAA+AGG + Chr1:65394874-65394893 None:intergenic 20.0%
!!! GTAAAAAAAACATTTGCTAT+GGG + Chr1:65394330-65394349 None:intergenic 20.0%
!!! TATCCACTTTCATTTTTTTA+TGG - Chr1:65393140-65393159 MsG0180003627.01.T01:intron 20.0%
!!! TATTTTTTTCTGTAGTTCAA+TGG - Chr1:65392700-65392719 MsG0180003627.01.T01:intron 20.0%
!!! TTATGTGAGTTTTTTAAAGT+GGG - Chr1:65392793-65392812 MsG0180003627.01.T01:intron 20.0%
! AACCAAAAAGCAAATTTGAA+GGG + Chr1:65394207-65394226 None:intergenic 25.0%
! ACAGCATCATAACAAAAAAA+TGG + Chr1:65394142-65394161 None:intergenic 25.0%
! AGTGATTTCATTATCATCAA+AGG + Chr1:65395894-65395913 None:intergenic 25.0%
! CAAAAACTAGAAAGCAATAT+AGG - Chr1:65395446-65395465 MsG0180003627.01.T01:intron 25.0%
! CCAATAAAACATAACAGATT+AGG + Chr1:65392379-65392398 None:intergenic 25.0%
! GAAGATAATACAACATGATT+AGG + Chr1:65393851-65393870 None:intergenic 25.0%
! GACACAAATTATAAAACAAC+TGG + Chr1:65394488-65394507 None:intergenic 25.0%
! GCAAATTATTCTAATAGACA+TGG - Chr1:65394981-65395000 MsG0180003627.01.T01:intron 25.0%
! GTTTGGGAGAAAAAATTTAA+AGG + Chr1:65395325-65395344 None:intergenic 25.0%
! TAACAAAAAAATGGCAGTTA+TGG + Chr1:65394133-65394152 None:intergenic 25.0%
! TAACAATGAAAATGATTACC+AGG + Chr1:65392489-65392508 None:intergenic 25.0%
! TAATAAGAGCCTTTATTGAT+TGG + Chr1:65392067-65392086 None:intergenic 25.0%
! TAGCCATAAAAAAATGAAAG+TGG + Chr1:65393146-65393165 None:intergenic 25.0%
! TATTATCTTCTTAAATGCAG+TGG - Chr1:65393861-65393880 MsG0180003627.01.T01:CDS 25.0%
! TCAATGGAAGAAGAAAAAAA+TGG - Chr1:65393595-65393614 MsG0180003627.01.T01:intron 25.0%
! TCTTATGTTGTTAGATACAA+TGG - Chr1:65392986-65393005 MsG0180003627.01.T01:intron 25.0%
! TGGAAAATTGGAAAATTTGA+AGG - Chr1:65394107-65394126 MsG0180003627.01.T01:CDS 25.0%
! TTTATATTATTCAGTGTTGC+TGG - Chr1:65392724-65392743 MsG0180003627.01.T01:intron 25.0%
!! AAAAGTACATAAACAACGTA+CGG + Chr1:65393253-65393272 None:intergenic 25.0%
!! ATTCAATTGAAGGATTTGTT+TGG + Chr1:65395424-65395443 None:intergenic 25.0%
!! ATTTTCATCTGTGACATTTT+CGG - Chr1:65396315-65396334 MsG0180003627.01.T01:five_prime_UTR 25.0%
!! CCTAATCTGTTATGTTTTAT+TGG - Chr1:65392376-65392395 MsG0180003627.01.T01:intron 25.0%
!! GTATTGATAAAGGATGTATT+TGG + Chr1:65394735-65394754 None:intergenic 25.0%
!! TACGTTGTTTATGTACTTTT+AGG - Chr1:65393253-65393272 MsG0180003627.01.T01:intron 25.0%
!! TTATTGGTAACAGAAAAAGA+AGG - Chr1:65392392-65392411 MsG0180003627.01.T01:intron 25.0%
!! TTCAATTGAAGGATTTGTTT+GGG + Chr1:65395423-65395442 None:intergenic 25.0%
!!! AAATTTGCTTTTTGGTTCAT+TGG - Chr1:65394210-65394229 MsG0180003627.01.T01:intron 25.0%
!!! AAATTTTTTCTCCCAAACAA+AGG - Chr1:65395327-65395346 MsG0180003627.01.T01:CDS 25.0%
!!! AATTGGTAGAGTATTGATAA+AGG + Chr1:65394745-65394764 None:intergenic 25.0%
!!! ATTTTTTGAACTCCTTCATA+TGG + Chr1:65395186-65395205 None:intergenic 25.0%
!!! ATTTTTTTATGGCTAATTCG+AGG - Chr1:65393151-65393170 MsG0180003627.01.T01:intron 25.0%
!!! CTTTCCTTTTTCTTACTTTT+TGG - Chr1:65392957-65392976 MsG0180003627.01.T01:intron 25.0%
!!! GGACATTTTTGTTTGAATAT+GGG - Chr1:65396006-65396025 MsG0180003627.01.T01:CDS 25.0%
!!! TAATTTTAATGGCTTTTCCA+TGG - Chr1:65394011-65394030 MsG0180003627.01.T01:intron 25.0%
!!! TATTTTGTTTTCCTAACTGT+TGG - Chr1:65395563-65395582 MsG0180003627.01.T01:intron 25.0%
!!! TGGACATTTTTGTTTGAATA+TGG - Chr1:65396005-65396024 MsG0180003627.01.T01:CDS 25.0%
!!! TTTTTTGAACTCCTTCATAT+GGG + Chr1:65395185-65395204 None:intergenic 25.0%
AAATTACAAAGAGATGTGCT+AGG + Chr1:65393997-65394016 None:intergenic 30.0%
AATACTCTACCAATTTGTCT+TGG - Chr1:65394750-65394769 MsG0180003627.01.T01:CDS 30.0%
AATGAAAATGATTACCAGGT+GGG + Chr1:65392485-65392504 None:intergenic 30.0%
ACCAATTTGTCTTGGAAAAT+TGG - Chr1:65394758-65394777 MsG0180003627.01.T01:intron 30.0%
AGCATTAAACTATCACATCA+AGG + Chr1:65395800-65395819 None:intergenic 30.0%
AGGAAAAGGGAAATATTGAA+GGG - Chr1:65393748-65393767 MsG0180003627.01.T01:intron 30.0%
AGGAGTTCAAAAAATGTACT+AGG - Chr1:65395191-65395210 MsG0180003627.01.T01:intron 30.0%
ATACAATTCTTACCACCATT+TGG + Chr1:65393338-65393357 None:intergenic 30.0%
ATCTGATAAAATGCCAATTG+AGG - Chr1:65393424-65393443 MsG0180003627.01.T01:intron 30.0%
ATTGGATCTTAGTTTAGACA+TGG - Chr1:65394228-65394247 MsG0180003627.01.T01:intron 30.0%
ATTTGAATGTTCAGAGGAAA+GGG - Chr1:65392854-65392873 MsG0180003627.01.T01:intron 30.0%
CAAGACATCAATCCAAATTA+AGG - Chr1:65395735-65395754 MsG0180003627.01.T01:intron 30.0%
CAGTTGCAAATTTGGAAAAT+TGG - Chr1:65394095-65394114 MsG0180003627.01.T01:CDS 30.0%
GAACCAAAAAGCAAATTTGA+AGG + Chr1:65394208-65394227 None:intergenic 30.0%
GAGAAAAAATTTAAAGGGAG+AGG + Chr1:65395319-65395338 None:intergenic 30.0%
GAGTTCAAAAAATGTACTAG+GGG - Chr1:65395193-65395212 MsG0180003627.01.T01:intron 30.0%
GATAAAATCTGCAATATGAC+TGG - Chr1:65394039-65394058 MsG0180003627.01.T01:intron 30.0%
GATAATGAACATACCTCATA+CGG + Chr1:65393673-65393692 None:intergenic 30.0%
GGAGTTCAAAAAATGTACTA+GGG - Chr1:65395192-65395211 MsG0180003627.01.T01:intron 30.0%
GTAATTAGTGTCTCATCTTT+AGG - Chr1:65394429-65394448 MsG0180003627.01.T01:CDS 30.0%
GTTTAATTCTGATACACTGT+CGG - Chr1:65392524-65392543 MsG0180003627.01.T01:intron 30.0%
TAATACCTTTGCATCTTGTT+TGG + Chr1:65391802-65391821 None:intergenic 30.0%
TAGAACAACTCAGTAGTTAT+AGG + Chr1:65393575-65393594 None:intergenic 30.0%
TCATATAAACCAATCCAGAA+AGG - Chr1:65392351-65392370 MsG0180003627.01.T01:intron 30.0%
TCGAATAAGCCAATCAATAA+AGG - Chr1:65392055-65392074 MsG0180003627.01.T01:CDS 30.0%
TGTGCTTATAAACAAGAACT+AGG + Chr1:65395042-65395061 None:intergenic 30.0%
TGTGTCTAGAAATTTGCAAA+CGG + Chr1:65394697-65394716 None:intergenic 30.0%
TTATAGCTCAAAACATGAGA+AGG + Chr1:65394384-65394403 None:intergenic 30.0%
TTGCATAAAACTAGAAAAGC+AGG + Chr1:65394177-65394196 None:intergenic 30.0%
TTGGATCTTAGTTTAGACAT+GGG - Chr1:65394229-65394248 MsG0180003627.01.T01:intron 30.0%
! AATACCTTTGCATCTTGTTT+GGG + Chr1:65391801-65391820 None:intergenic 30.0%
! ACCAAATGAGTCTTATAAGT+AGG + Chr1:65394648-65394667 None:intergenic 30.0%
! ACTCATAACAAATGGCTTTT+AGG - Chr1:65394348-65394367 MsG0180003627.01.T01:CDS 30.0%
! CCAAATGAGTCTTATAAGTA+GGG + Chr1:65394647-65394666 None:intergenic 30.0%
! CTTAATTTGGATTGATGTCT+TGG + Chr1:65395737-65395756 None:intergenic 30.0%
! GCAGATTTTATCTATATCCA+TGG + Chr1:65394031-65394050 None:intergenic 30.0%
! GTTGTTGAAGACAAAACTTT+TGG - Chr1:65391696-65391715 MsG0180003627.01.T01:three_prime_UTR 30.0%
! GTTTGTAACTTTTATGCATG+AGG - Chr1:65394301-65394320 MsG0180003627.01.T01:intron 30.0%
! TCCAATTTTCCAAGACAAAT+TGG + Chr1:65394762-65394781 None:intergenic 30.0%
! TCCTTTTTAATCGAGGAAAA+GGG - Chr1:65393735-65393754 MsG0180003627.01.T01:intron 30.0%
! TGCAAACGGACTTATATTTA+GGG + Chr1:65394683-65394702 None:intergenic 30.0%
! TTAGATTAGGGTTTGTGTTT+TGG + Chr1:65391482-65391501 None:intergenic 30.0%
! TTAGGTATGCAAACACTTTT+TGG - Chr1:65393271-65393290 MsG0180003627.01.T01:intron 30.0%
! TTGCAAACGGACTTATATTT+AGG + Chr1:65394684-65394703 None:intergenic 30.0%
! TTTTCCTCGATTAAAAAGGA+GGG + Chr1:65393735-65393754 None:intergenic 30.0%
!! AATAGACATGGAATTTGTTG+TGG - Chr1:65394993-65395012 MsG0180003627.01.T01:intron 30.0%
!! AGAAGTTCACTTAGTTTGTA+AGG - Chr1:65394940-65394959 MsG0180003627.01.T01:CDS 30.0%
!! TACCCTTCAAATTTGCTTTT+TGG - Chr1:65394202-65394221 MsG0180003627.01.T01:CDS 30.0%
!! TGTTCTAAAATCCCAAATGA+AGG - Chr1:65393385-65393404 MsG0180003627.01.T01:intron 30.0%
!!! ACACATCTTTAGGTTTTGTT+TGG - Chr1:65395080-65395099 MsG0180003627.01.T01:intron 30.0%
!!! CACATCTTTAGGTTTTGTTT+GGG - Chr1:65395081-65395100 MsG0180003627.01.T01:intron 30.0%
AAAAAACTTCCTCGAATGCA+AGG + Chr1:65395864-65395883 None:intergenic 35.0%
AAACTCACATAATACGGACT+TGG + Chr1:65392785-65392804 None:intergenic 35.0%
AAATGACGATGCTTCTTGTA+AGG + Chr1:65393483-65393502 None:intergenic 35.0%
AACTCACATAATACGGACTT+GGG + Chr1:65392784-65392803 None:intergenic 35.0%
AAGGTAGGTGGTAAGTATAT+TGG - Chr1:65394959-65394978 MsG0180003627.01.T01:CDS 35.0%
AAGTACCCTATTAATAGGGA+TGG - Chr1:65394899-65394918 MsG0180003627.01.T01:CDS 35.0%
AATCATTATCCCACTAAGAG+GGG + Chr1:65395496-65395515 None:intergenic 35.0%
AATGACGATGCTTCTTGTAA+GGG + Chr1:65393482-65393501 None:intergenic 35.0%
ACAAGAGATTGTCCAAAACA+TGG - Chr1:65394548-65394567 MsG0180003627.01.T01:intron 35.0%
ACAAGCTGTTTATCCAAACA+GGG + Chr1:65391896-65391915 None:intergenic 35.0%
ACATTCTGTTCAGTTTCATC+AGG + Chr1:65393966-65393985 None:intergenic 35.0%
AGGAATTTCTCACCTTTGTT+TGG + Chr1:65395342-65395361 None:intergenic 35.0%
AGTGCAAGCTCAAAAGATAT+AGG + Chr1:65394459-65394478 None:intergenic 35.0%
ATAACACAACACTTTAGCAG+TGG + Chr1:65396133-65396152 None:intergenic 35.0%
ATCCTCTCATACGAAAGTAA+AGG - Chr1:65396264-65396283 MsG0180003627.01.T01:five_prime_UTR 35.0%
ATGAAGTGGAAAGCAATATG+TGG - Chr1:65396220-65396239 MsG0180003627.01.T01:intron 35.0%
ATTAAGCCGTTTATCCAAAC+AGG + Chr1:65392134-65392153 None:intergenic 35.0%
ATTGGGATTTATGGTGCAAA+TGG - Chr1:65394274-65394293 MsG0180003627.01.T01:intron 35.0%
ATTGTCCAAAACATGGTTGA+GGG - Chr1:65394555-65394574 MsG0180003627.01.T01:intron 35.0%
CAATCATTATCCCACTAAGA+GGG + Chr1:65395497-65395516 None:intergenic 35.0%
CAATGAAAATGATTACCAGG+TGG + Chr1:65392486-65392505 None:intergenic 35.0%
CCAGTAACAATTGGGATTTA+TGG - Chr1:65394265-65394284 MsG0180003627.01.T01:intron 35.0%
CCATAAATCCCAATTGTTAC+TGG + Chr1:65394268-65394287 None:intergenic 35.0%
CCCTACTTATAAGACTCATT+TGG - Chr1:65394644-65394663 MsG0180003627.01.T01:intron 35.0%
CTACTGAGTTGTTCTATCAA+TGG - Chr1:65393579-65393598 MsG0180003627.01.T01:intron 35.0%
CTCATGATTTGAATGTTCAG+AGG - Chr1:65392848-65392867 MsG0180003627.01.T01:intron 35.0%
CTCTAACAAAGCCTTCATTT+GGG + Chr1:65393399-65393418 None:intergenic 35.0%
CTGGTTGAAAGAAAATGAAG+TGG - Chr1:65396206-65396225 MsG0180003627.01.T01:intron 35.0%
GAGGAAAAGGGAAATATTGA+AGG - Chr1:65393747-65393766 MsG0180003627.01.T01:intron 35.0%
GATTTGAATGTTCAGAGGAA+AGG - Chr1:65392853-65392872 MsG0180003627.01.T01:intron 35.0%
GCAACTTATATATGTCCGTA+GGG - Chr1:65396160-65396179 MsG0180003627.01.T01:intron 35.0%
GGAAAAGGGAAATATTGAAG+GGG - Chr1:65393749-65393768 MsG0180003627.01.T01:intron 35.0%
GTTAGATACAATGGAAGAGT+GGG - Chr1:65392995-65393014 MsG0180003627.01.T01:intron 35.0%
TCCTCTCATACGAAAGTAAA+GGG - Chr1:65396265-65396284 MsG0180003627.01.T01:five_prime_UTR 35.0%
TGAAGTGGAAAGCAATATGT+GGG - Chr1:65396221-65396240 MsG0180003627.01.T01:intron 35.0%
TGATAAAATGCCAATTGAGG+AGG - Chr1:65393427-65393446 MsG0180003627.01.T01:intron 35.0%
TGCAACTTATATATGTCCGT+AGG - Chr1:65396159-65396178 MsG0180003627.01.T01:intron 35.0%
TGCTGTGTGATTATTGTGTA+TGG - Chr1:65394600-65394619 MsG0180003627.01.T01:intron 35.0%
TGGATCTTAGTTTAGACATG+GGG - Chr1:65394230-65394249 MsG0180003627.01.T01:intron 35.0%
TGTTAGATACAATGGAAGAG+TGG - Chr1:65392994-65393013 MsG0180003627.01.T01:intron 35.0%
TTAAGCCGTTTATCCAAACA+GGG + Chr1:65392133-65392152 None:intergenic 35.0%
TTCAAAAAATGTACTAGGGG+AGG - Chr1:65395196-65395215 MsG0180003627.01.T01:intron 35.0%
TTGGGATTTATGGTGCAAAT+GGG - Chr1:65394275-65394294 MsG0180003627.01.T01:intron 35.0%
TTTACTTTCGTATGAGAGGA+TGG + Chr1:65396265-65396284 None:intergenic 35.0%
TTTCCTCGATTAAAAAGGAG+GGG + Chr1:65393734-65393753 None:intergenic 35.0%
TTTGAATGTTCAGAGGAAAG+GGG - Chr1:65392855-65392874 MsG0180003627.01.T01:intron 35.0%
TTTGTGTCTGAATTCCTGTT+TGG - Chr1:65394500-65394519 MsG0180003627.01.T01:intron 35.0%
! AGGAGTTGTAGTTTTCACTT+GGG + Chr1:65393555-65393574 None:intergenic 35.0%
! CGATTCAGTTTTCTGTAGTT+CGG - Chr1:65395957-65395976 MsG0180003627.01.T01:CDS 35.0%
! CTCCTTTTTAATCGAGGAAA+AGG - Chr1:65393734-65393753 MsG0180003627.01.T01:intron 35.0%
! CTTTTCCTCGATTAAAAAGG+AGG + Chr1:65393736-65393755 None:intergenic 35.0%
! GCAAACGGACTTATATTTAG+GGG + Chr1:65394682-65394701 None:intergenic 35.0%
! GCCAAAGTACCCTATTAATA+GGG - Chr1:65394895-65394914 MsG0180003627.01.T01:CDS 35.0%
! GGAATTTCTCACCTTTGTTT+GGG + Chr1:65395341-65395360 None:intergenic 35.0%
! TACCATTTTCCAAAGCCATT+GGG + Chr1:65394529-65394548 None:intergenic 35.0%
! TAGGAGTTGTAGTTTTCACT+TGG + Chr1:65393556-65393575 None:intergenic 35.0%
! TCCCTATTAATAGGGTACTT+TGG + Chr1:65394899-65394918 None:intergenic 35.0%
! TCCCTTTTCCTCGATTAAAA+AGG + Chr1:65393739-65393758 None:intergenic 35.0%
! TGCCAAAGTACCCTATTAAT+AGG - Chr1:65394894-65394913 MsG0180003627.01.T01:CDS 35.0%
! TTGGTAACAGAAAAAGAAGG+AGG - Chr1:65392395-65392414 MsG0180003627.01.T01:intron 35.0%
! TTTTCAATCTCCTCCTCAAT+TGG + Chr1:65393440-65393459 None:intergenic 35.0%
! TTTTGGATTCGAGAAGCTTA+CGG + Chr1:65391465-65391484 None:intergenic 35.0%
! TTTTTGCATGCGACAATGTA+TGG - Chr1:65394405-65394424 MsG0180003627.01.T01:CDS 35.0%
!! ACTGCTAAAGTGTTGTGTTA+TGG - Chr1:65396132-65396151 MsG0180003627.01.T01:intron 35.0%
!! ATGCAAACACTTTTTGGATG+CGG - Chr1:65393277-65393296 MsG0180003627.01.T01:intron 35.0%
!! CAGCATGTTTGTTTTCTGTT+AGG + Chr1:65394585-65394604 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG - Chr1:65391945-65391964 MsG0180003627.01.T01:three_prime_UTR 35.0%
!! GTTCACTTAGTTTGTAAGGT+AGG - Chr1:65394944-65394963 MsG0180003627.01.T01:CDS 35.0%
!! TAACAAATGGCTTTTAGGAG+TGG - Chr1:65394353-65394372 MsG0180003627.01.T01:CDS 35.0%
!!! GATTTTAGAACATATCCAGG+TGG + Chr1:65393377-65393396 None:intergenic 35.0%
!!! GTGTTTGCTTCTTGTTGTTT+TGG - Chr1:65392925-65392944 MsG0180003627.01.T01:intron 35.0%
!!! TCTTGTTGTTTTGGTTCTGA+TGG - Chr1:65392934-65392953 MsG0180003627.01.T01:intron 35.0%
!!! TGGGATTTTAGAACATATCC+AGG + Chr1:65393380-65393399 None:intergenic 35.0%
AAAATGTCCATCACAGTCAC+AGG + Chr1:65395995-65396014 None:intergenic 40.0%
AAATCCCAATTGTTACTGGC+TGG + Chr1:65394264-65394283 None:intergenic 40.0%
AACTGTTGGATCCATCTTCA+GGG - Chr1:65395577-65395596 MsG0180003627.01.T01:intron 40.0%
AAGAATAACCTAGCTCCCTA+CGG + Chr1:65396178-65396197 None:intergenic 40.0%
AAGGAAGGAAGGAAAATGGA+AGG - Chr1:65395107-65395126 MsG0180003627.01.T01:intron 40.0%
ACATCAGCTTTCGATTGCTT+CGG + Chr1:65391660-65391679 None:intergenic 40.0%
ACCCTATTAATAGGGATGGA+GGG - Chr1:65394903-65394922 MsG0180003627.01.T01:CDS 40.0%
ACGAAAGTAAAGGGATGAAG+TGG - Chr1:65396274-65396293 MsG0180003627.01.T01:five_prime_UTR 40.0%
AGGAAGGAAGGAAAATGGAA+GGG - Chr1:65395108-65395127 MsG0180003627.01.T01:intron 40.0%
AGGTTATTCTTGGGAGTTTC+TGG - Chr1:65396187-65396206 MsG0180003627.01.T01:intron 40.0%
AGTACATAAACAACGTACGG+AGG + Chr1:65393250-65393269 None:intergenic 40.0%
ATCCACAAACAAGCTAGCAT+TGG + Chr1:65393904-65393923 None:intergenic 40.0%
ATGACGATGCTTCTTGTAAG+GGG + Chr1:65393481-65393500 None:intergenic 40.0%
CAAGGTTGAGAATACTTCTC+AGG + Chr1:65395782-65395801 None:intergenic 40.0%
CCAATCATTATCCCACTAAG+AGG + Chr1:65395498-65395517 None:intergenic 40.0%
CCTCTAACAAAGCCTTCATT+TGG + Chr1:65393400-65393419 None:intergenic 40.0%
CCTCTTAGTGGGATAATGAT+TGG - Chr1:65395495-65395514 MsG0180003627.01.T01:intron 40.0%
CTTAGTGGGATAATGATTGG+TGG - Chr1:65395498-65395517 MsG0180003627.01.T01:intron 40.0%
GAAAAAGAAGGAGGAAGAGA+AGG - Chr1:65392404-65392423 MsG0180003627.01.T01:intron 40.0%
GACAAGCTGTTTATCCAAAC+AGG + Chr1:65391897-65391916 None:intergenic 40.0%
GAGTTTCCTTTACTTCGCAA+AGG - Chr1:65396065-65396084 MsG0180003627.01.T01:CDS 40.0%
GATTGTCCAAAACATGGTTG+AGG - Chr1:65394554-65394573 MsG0180003627.01.T01:intron 40.0%
GTCTTATAAGTAGGGACACA+TGG + Chr1:65394639-65394658 None:intergenic 40.0%
TAACAGATTAGGAGCCTTTC+TGG + Chr1:65392368-65392387 None:intergenic 40.0%
TAACTGTTGGATCCATCTTC+AGG - Chr1:65395576-65395595 MsG0180003627.01.T01:intron 40.0%
TACCCTATTAATAGGGATGG+AGG - Chr1:65394902-65394921 MsG0180003627.01.T01:CDS 40.0%
TAGAGAGGAAGCAATATGGT+TGG - Chr1:65393300-65393319 MsG0180003627.01.T01:intron 40.0%
TAGGGAGCTAGGTTATTCTT+GGG - Chr1:65396178-65396197 MsG0180003627.01.T01:intron 40.0%
TATCATATGCTTCTAGCCAC+TGG - Chr1:65395834-65395853 MsG0180003627.01.T01:intron 40.0%
TCAAGAGACATTGGAGAAAG+TGG - Chr1:65393019-65393038 MsG0180003627.01.T01:intron 40.0%
TCAATCCAAATTAAGGAGCC+AGG - Chr1:65395742-65395761 MsG0180003627.01.T01:intron 40.0%
TCCCTCCATCCCTATTAATA+GGG + Chr1:65394907-65394926 None:intergenic 40.0%
TCCCTTTACTTTCGTATGAG+AGG + Chr1:65396269-65396288 None:intergenic 40.0%
TCGAGAAGCTTACGGAAATT+TGG + Chr1:65391457-65391476 None:intergenic 40.0%
TGAAGATGGATCCAACAGTT+AGG + Chr1:65395577-65395596 None:intergenic 40.0%
TGTTCAGTTTCATCAGGTTC+TGG + Chr1:65393960-65393979 None:intergenic 40.0%
TTCAACAACCTTCTGCTTCT+TGG + Chr1:65391685-65391704 None:intergenic 40.0%
TTGAACTCCTTCATATGGGA+GGG + Chr1:65395181-65395200 None:intergenic 40.0%
TTTGAACTCCTTCATATGGG+AGG + Chr1:65395182-65395201 None:intergenic 40.0%
! AATGTACTAGGGGAGGATTT+TGG - Chr1:65395203-65395222 MsG0180003627.01.T01:intron 40.0%
! ATTCCTGTTTGGAATCCCAA+TGG - Chr1:65394511-65394530 MsG0180003627.01.T01:intron 40.0%
! CCAGTGTTTGGGTTAGATTA+GGG + Chr1:65391494-65391513 None:intergenic 40.0%
! CTTTGCATCTTGTTTGGGAT+CGG + Chr1:65391796-65391815 None:intergenic 40.0%
! GAAATCCCTCAACCATGTTT+TGG + Chr1:65394563-65394582 None:intergenic 40.0%
! GAAGGATTTGTTTGGGAGTT+AGG + Chr1:65395416-65395435 None:intergenic 40.0%
! GGATAATGATTGGTGGTTGT+TGG - Chr1:65395505-65395524 MsG0180003627.01.T01:intron 40.0%
! GTACCATTTTCCAAAGCCAT+TGG + Chr1:65394530-65394549 None:intergenic 40.0%
! GTGCATGTCATTAGCTGTTT+TGG - Chr1:65392287-65392306 MsG0180003627.01.T01:intron 40.0%
! GTGTGATTGAAGGGGTATAT+CGG - Chr1:65391426-65391445 MsG0180003627.01.T01:three_prime_UTR 40.0%
! TGACGATGTGAGAGATTTTC+TGG + Chr1:65391534-65391553 None:intergenic 40.0%
! TGTGATTGAAGGGGTATATC+GGG - Chr1:65391427-65391446 MsG0180003627.01.T01:three_prime_UTR 40.0%
! TTTTCTGCTTATGCCCTGTT+TGG - Chr1:65391880-65391899 MsG0180003627.01.T01:three_prime_UTR 40.0%
! TTTTGGTCATGTCCAAATGG+TGG - Chr1:65393323-65393342 MsG0180003627.01.T01:intron 40.0%
!! ATCCCAATGGCTTTGGAAAA+TGG - Chr1:65394524-65394543 MsG0180003627.01.T01:intron 40.0%
!! CACTTAGTTTGTAAGGTAGG+TGG - Chr1:65394947-65394966 MsG0180003627.01.T01:CDS 40.0%
!! CCAAATGAAGGCTTTGTTAG+AGG - Chr1:65393397-65393416 MsG0180003627.01.T01:intron 40.0%
!!! GGAAGCAATATGGTTGGTTT+TGG - Chr1:65393306-65393325 MsG0180003627.01.T01:intron 40.0%
!!! TGGTTTTGGTCATGTCCAAA+TGG - Chr1:65393320-65393339 MsG0180003627.01.T01:intron 40.0%
!!! TTAGGTTTTGTTTGGGCGAA+AGG - Chr1:65395088-65395107 MsG0180003627.01.T01:intron 40.0%
AAAGTGGGTCAGTGTGCTAA+GGG - Chr1:65392808-65392827 MsG0180003627.01.T01:intron 45.0%
AAGCAGCCTTTGCGAAGTAA+AGG + Chr1:65396074-65396093 None:intergenic 45.0%
AAGCCATTGGGATTCCAAAC+AGG + Chr1:65394517-65394536 None:intergenic 45.0%
AAGGGATGATAACCCTTGCA+TGG - Chr1:65395126-65395145 MsG0180003627.01.T01:intron 45.0%
ACACAACACTTTAGCAGTGG+TGG + Chr1:65396130-65396149 None:intergenic 45.0%
ACTAAGACCCTCCCATATGA+AGG - Chr1:65395171-65395190 MsG0180003627.01.T01:intron 45.0%
ACTGTTGGATCCATCTTCAG+GGG - Chr1:65395578-65395597 MsG0180003627.01.T01:intron 45.0%
AGAGACATTGGAGAAAGTGG+TGG - Chr1:65393022-65393041 MsG0180003627.01.T01:intron 45.0%
AGAGTGGGATCAAGAGACAT+TGG - Chr1:65393010-65393029 MsG0180003627.01.T01:intron 45.0%
AGGGATGATAACCCTTGCAT+GGG - Chr1:65395127-65395146 MsG0180003627.01.T01:intron 45.0%
ATATATGTCCGTAGGGAGCT+AGG - Chr1:65396167-65396186 MsG0180003627.01.T01:intron 45.0%
ATCGTCGTCGTCAATGTCAT+CGG + Chr1:65395668-65395687 None:intergenic 45.0%
ATGGGAGGGTCTTAGTTTCA+TGG + Chr1:65395167-65395186 None:intergenic 45.0%
CATGCCAGCCAGTAACAATT+GGG - Chr1:65394257-65394276 MsG0180003627.01.T01:intron 45.0%
CCCTAATCTAACCCAAACAC+TGG - Chr1:65391491-65391510 MsG0180003627.01.T01:three_prime_UTR 45.0%
CGACGATGATGAATTGGACT+TGG - Chr1:65395681-65395700 MsG0180003627.01.T01:intron 45.0%
CGATCCCAAACAAGATGCAA+AGG - Chr1:65391794-65391813 MsG0180003627.01.T01:three_prime_UTR 45.0%
CTCCCTCCATCCCTATTAAT+AGG + Chr1:65394908-65394927 None:intergenic 45.0%
GATTAGGAGCCTTTCTGGAT+TGG + Chr1:65392363-65392382 None:intergenic 45.0%
GCGAAAGGAAGGAAGGAAAA+TGG - Chr1:65395103-65395122 MsG0180003627.01.T01:intron 45.0%
GGAAGAGAAGGCAAAAGAGA+AGG - Chr1:65392416-65392435 MsG0180003627.01.T01:intron 45.0%
GTAGGCCCTGTTTGGATAAA+CGG - Chr1:65392125-65392144 MsG0180003627.01.T01:CDS 45.0%
GTAGGGAGCTAGGTTATTCT+TGG - Chr1:65396177-65396196 MsG0180003627.01.T01:intron 45.0%
TAAAGTGGGTCAGTGTGCTA+AGG - Chr1:65392807-65392826 MsG0180003627.01.T01:intron 45.0%
TACAGTGATAAGCGTGACGA+TGG - Chr1:65392892-65392911 MsG0180003627.01.T01:intron 45.0%
TATAGACATGCACTTCCACC+TGG - Chr1:65393359-65393378 MsG0180003627.01.T01:intron 45.0%
TGACGACGACGATGATGAAT+TGG - Chr1:65395675-65395694 MsG0180003627.01.T01:intron 45.0%
TGACGTGCAGTGTGATTGAA+GGG - Chr1:65391417-65391436 MsG0180003627.01.T01:three_prime_UTR 45.0%
TGAGGAGGAGATTGAAAAGC+AGG - Chr1:65393442-65393461 MsG0180003627.01.T01:intron 45.0%
TGATGTAGCCAAGAAGCAGA+AGG - Chr1:65391674-65391693 MsG0180003627.01.T01:three_prime_UTR 45.0%
TGATTACCAGGTGGGACTTT+AGG + Chr1:65392477-65392496 None:intergenic 45.0%
! AATTGTTACTGGCTGGCATG+GGG + Chr1:65394257-65394276 None:intergenic 45.0%
! ACTTTTTGGATGCGGTAGAG+AGG - Chr1:65393285-65393304 MsG0180003627.01.T01:intron 45.0%
! ATCTTGTTTGGGATCGGTTC+TGG + Chr1:65391790-65391809 None:intergenic 45.0%
! CAATTGTTACTGGCTGGCAT+GGG + Chr1:65394258-65394277 None:intergenic 45.0%
! CTTGGACGAGTTGAATGAAC+TGG - Chr1:65395699-65395718 MsG0180003627.01.T01:intron 45.0%
! GCCAGTGTTTGGGTTAGATT+AGG + Chr1:65391495-65391514 None:intergenic 45.0%
! GTTTGGAATCCCAATGGCTT+TGG - Chr1:65394517-65394536 MsG0180003627.01.T01:intron 45.0%
! TACTAGGGGAGGATTTTGGA+GGG - Chr1:65395207-65395226 MsG0180003627.01.T01:intron 45.0%
! TAGCCCCTCCTTTTTAATCG+AGG - Chr1:65393728-65393747 MsG0180003627.01.T01:intron 45.0%
! TCTTGTTTGGGATCGGTTCT+GGG + Chr1:65391789-65391808 None:intergenic 45.0%
!! ACTGGGAGTGCTGCTAATAA+TGG - Chr1:65395601-65395620 MsG0180003627.01.T01:intron 45.0%
!! CATCAGGTTCTGGTTCTCTT+TGG + Chr1:65393950-65393969 None:intergenic 45.0%
!! GTCCAATGCTAGCTTGTTTG+TGG - Chr1:65393899-65393918 MsG0180003627.01.T01:intron 45.0%
!! TTTTCTGGTGTGTGTGTACC+TGG + Chr1:65391519-65391538 None:intergenic 45.0%
!!! GTTTTGTTTGGGCGAAAGGA+AGG - Chr1:65395092-65395111 MsG0180003627.01.T01:intron 45.0%
!! ATAAATATTATAAATAAAAG+AGG + Chr1:65395259-65395278 None:intergenic 5.0%
AAGAACAAACCCCCCATGCA+AGG + Chr1:65395142-65395161 None:intergenic 50.0%
ACTGGCATTCCTTGCATTCG+AGG - Chr1:65395852-65395871 MsG0180003627.01.T01:intron 50.0%
AGAACAAACCCCCCATGCAA+GGG + Chr1:65395141-65395160 None:intergenic 50.0%
ATGTAGCTGACCCCTCTTAG+TGG - Chr1:65395483-65395502 MsG0180003627.01.T01:intron 50.0%
CACAGTCACAGGTCCAATGA+GGG + Chr1:65395984-65396003 None:intergenic 50.0%
CAGCTCCTGGCTCCTTAATT+TGG + Chr1:65395750-65395769 None:intergenic 50.0%
CAGGATTAAGCTTCAGCTCC+TGG + Chr1:65395763-65395782 None:intergenic 50.0%
CATTGGACCTGTGACTGTGA+TGG - Chr1:65395985-65396004 MsG0180003627.01.T01:CDS 50.0%
CCATGCCAGCCAGTAACAAT+TGG - Chr1:65394256-65394275 MsG0180003627.01.T01:intron 50.0%
GACGTGCAGTGTGATTGAAG+GGG - Chr1:65391418-65391437 MsG0180003627.01.T01:three_prime_UTR 50.0%
GATGATAACCCTTGCATGGG+GGG - Chr1:65395130-65395149 MsG0180003627.01.T01:intron 50.0%
GCGGTAGAGAGGAAGCAATA+TGG - Chr1:65393296-65393315 MsG0180003627.01.T01:intron 50.0%
GGATGATAACCCTTGCATGG+GGG - Chr1:65395129-65395148 MsG0180003627.01.T01:intron 50.0%
GGGATGATAACCCTTGCATG+GGG - Chr1:65395128-65395147 MsG0180003627.01.T01:intron 50.0%
GGGCTAAGAATGACCGTATG+AGG - Chr1:65393657-65393676 MsG0180003627.01.T01:intron 50.0%
GTGACGTGCAGTGTGATTGA+AGG - Chr1:65391416-65391435 MsG0180003627.01.T01:three_prime_UTR 50.0%
TCACAGTCACAGGTCCAATG+AGG + Chr1:65395985-65396004 None:intergenic 50.0%
TCAGCTTTCGATTGCTTCGG+AGG + Chr1:65391657-65391676 None:intergenic 50.0%
TCGAATGCAAGGAATGCCAG+TGG + Chr1:65395853-65395872 None:intergenic 50.0%
TCGTCGTCGTCAATGTCATC+GGG + Chr1:65395667-65395686 None:intergenic 50.0%
TCTGTAGTTCGGTCCCTCAT+TGG - Chr1:65395968-65395987 MsG0180003627.01.T01:CDS 50.0%
TGTAGCTGACCCCTCTTAGT+GGG - Chr1:65395484-65395503 MsG0180003627.01.T01:intron 50.0%
TGTTTGGGCGAAAGGAAGGA+AGG - Chr1:65395096-65395115 MsG0180003627.01.T01:intron 50.0%
! CCAATTGTTACTGGCTGGCA+TGG + Chr1:65394259-65394278 None:intergenic 50.0%
! GTACTAGGGGAGGATTTTGG+AGG - Chr1:65395206-65395225 MsG0180003627.01.T01:intron 50.0%
! TGTACCTGGTGCCAGTGTTT+GGG + Chr1:65391505-65391524 None:intergenic 50.0%
! TTCAACCGGGTTTTCTGCGT+AGG - Chr1:65392107-65392126 MsG0180003627.01.T01:CDS 50.0%
! TTTTCTGCGTAGGCCCTGTT+TGG - Chr1:65392117-65392136 MsG0180003627.01.T01:CDS 50.0%
!!! TGAAGGGGCTGCGTGTTTTT+TGG - Chr1:65393764-65393783 MsG0180003627.01.T01:intron 50.0%
AGTCAGCCTAAAGTCCCACC+TGG - Chr1:65392468-65392487 MsG0180003627.01.T01:intron 55.0%
CTAACCCAAACACTGGCACC+AGG - Chr1:65391498-65391517 MsG0180003627.01.T01:three_prime_UTR 55.0%
CTTAGCCCTCTCTGCCTGTT+GGG + Chr1:65393645-65393664 None:intergenic 55.0%
GGACGAGAGAGATGCCAGTT+TGG - Chr1:65393616-65393635 MsG0180003627.01.T01:intron 55.0%
GGATCCATCTTCAGGGGACT+GGG - Chr1:65395584-65395603 MsG0180003627.01.T01:intron 55.0%
TCTTAGCCCTCTCTGCCTGT+TGG + Chr1:65393646-65393665 None:intergenic 55.0%
TGGATCCATCTTCAGGGGAC+TGG - Chr1:65395583-65395602 MsG0180003627.01.T01:intron 55.0%
! GTGTACCTGGTGCCAGTGTT+TGG + Chr1:65391506-65391525 None:intergenic 55.0%
!! ATCGGTTCTGGGTTGAACGG+AGG + Chr1:65391778-65391797 None:intergenic 55.0%
!! GCTTCGGAGGCATCTCGTAT+CGG + Chr1:65391644-65391663 None:intergenic 55.0%
!! GGGATCGGTTCTGGGTTGAA+CGG + Chr1:65391781-65391800 None:intergenic 55.0%
ACCACCTGTTGCTGAGGTGC+TGG + Chr1:65395629-65395648 None:intergenic 60.0%
CACTCCCAGTCCCCTGAAGA+TGG + Chr1:65395591-65395610 None:intergenic 60.0%
CAGGGCCTACGCAGAAAACC+CGG + Chr1:65392115-65392134 None:intergenic 60.0%
GTCTGCACCACCTGTTGCTG+AGG + Chr1:65395635-65395654 None:intergenic 60.0%
TGCCAGTTTGGCTGCCCAAC+AGG - Chr1:65393628-65393647 MsG0180003627.01.T01:intron 60.0%
TGCCTGTTGGGCAGCCAAAC+TGG + Chr1:65393633-65393652 None:intergenic 60.0%
! CCACCTGTTGCTGAGGTGCT+GGG + Chr1:65395628-65395647 None:intergenic 60.0%
AGGGGGAAGGGTAGTGAGGG+AGG + Chr1:65395387-65395406 None:intergenic 65.0%
CCCAGCACCTCAGCAACAGG+TGG - Chr1:65395625-65395644 MsG0180003627.01.T01:intron 65.0%
GGCTGCCCAACAGGCAGAGA+GGG - Chr1:65393637-65393656 MsG0180003627.01.T01:intron 65.0%
GGGGAAGGGTAGTGAGGGAG+GGG + Chr1:65395385-65395404 None:intergenic 65.0%
GGGGGAAGGGTAGTGAGGGA+GGG + Chr1:65395386-65395405 None:intergenic 65.0%
GGTCCCAGCACCTCAGCAAC+AGG - Chr1:65395622-65395641 MsG0180003627.01.T01:intron 65.0%
TGGCTGCCCAACAGGCAGAG+AGG - Chr1:65393636-65393655 MsG0180003627.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 65391408 65396363 65391408 ID=MsG0180003627.01;Name=MsG0180003627.01
Chr1 mRNA 65391408 65396337 65391408 ID=MsG0180003627.01.T01;Parent=MsG0180003627.01;Name=MsG0180003627.01.T01;_AED=0.32;_eAED=0.32;_QI=86|1|1|1|0.87|0.88|9|586|360
Chr1 exon 65395956 65396120 65395956 ID=MsG0180003627.01.T01:exon:50639;Parent=MsG0180003627.01.T01
Chr1 exon 65396252 65396337 65396252 ID=MsG0180003627.01.T01:exon:50638;Parent=MsG0180003627.01.T01
Chr1 five_prime_UTR 65396252 65396337 65396252 ID=MsG0180003627.01.T01:five_prime_utr;Parent=MsG0180003627.01.T01
Chr1 CDS 65395956 65396120 65395956 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 CDS 65395282 65395366 65395282 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 CDS 65394858 65394998 65394858 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 CDS 65394683 65394771 65394683 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 CDS 65394308 65394496 65394308 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 CDS 65394093 65394223 65394093 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 CDS 65393788 65393890 65393788 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 CDS 65391994 65392173 65391994 ID=MsG0180003627.01.T01:cds;Parent=MsG0180003627.01.T01
Chr1 three_prime_UTR 65391408 65391993 65391408 ID=MsG0180003627.01.T01:three_prime_utr;Parent=MsG0180003627.01.T01
Chr1 mRNA 65391408 65396363 65391408 ID=MsG0180003627.01.T02;Parent=MsG0180003627.01;Name=MsG0180003627.01.T02;_AED=0.31;_eAED=0.31;_QI=243|1|1|1|1|1|8|586|360
Chr1 exon 65395956 65396363 65395956 ID=MsG0180003627.01.T02:exon:50647;Parent=MsG0180003627.01.T02
Chr1 five_prime_UTR 65396121 65396363 65396121 ID=MsG0180003627.01.T02:five_prime_utr;Parent=MsG0180003627.01.T02
Chr1 CDS 65395956 65396120 65395956 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 CDS 65395282 65395366 65395282 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 CDS 65394858 65394998 65394858 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 CDS 65394683 65394771 65394683 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 CDS 65394308 65394496 65394308 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 CDS 65394093 65394223 65394093 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 CDS 65393788 65393890 65393788 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 CDS 65391994 65392173 65391994 ID=MsG0180003627.01.T02:cds;Parent=MsG0180003627.01.T02
Chr1 three_prime_UTR 65391408 65391993 65391408 ID=MsG0180003627.01.T02:three_prime_utr;Parent=MsG0180003627.01.T02
Gene Sequence

>MsG0180003627.01.T02

ATGCCTCCGAAGCAATCGAAAGCTGATGTAGCCAAGAAGCAGAAGGTTGTTGAAGACAAAACTTTTGGTCTCAAAAACAAAAACAAAAGCAAAGCTGTTCAGAAATATGTTCAGAATCTCAAATCCTCCGTTCAACCCAGAACCGATCCCAAACAAGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCAAAAGAGAAGGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCACCTGGTGTTGATCCCAAGTCCGTATTATGTGAGTTTTTTAAAGTGGGTCAGTGTGCTAAGGGATTCAAATGCAAATTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGACATATACAGTGATAAGCGTGACGATGATACAATGGAAGAGTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAATGAGTATAATCAGAACAAACCAACAGATATTGTATGCAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGTCATGTCCAAATGGTGGTAAGAATTGTATCTATAGACATGCACTTCCACCTGGATATGTTCTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATTGAGGAGGAGATTGAAAAGCAGCGTTCCCAAGTGAAAACTACAACTCCTATAACTACTGAGTTGTTCTATCAATGGAAGAAGAAAAAAATGGACGAGAGAGATGCCAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCCAATGCTAGCTTGTTTGTGGATGATGCTGAAGCATACGACAACTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAACAGGTGGTGCAGACGATGAACTTCCCGATGACATTGACGACGACGATGATGAATTGGACTTGGACGAGTTGAATGAACTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATTAAGGAGCCAGGAGCTGAAGCTTAA

>MsG0180003627.01.T01

ATGCCTCCGAAGCAATCGAAAGCTGATGTAGCCAAGAAGCAGAAGGTTGTTGAAGACAAAACTTTTGGTCTCAAAAACAAAAACAAAAGCAAAGCTGTTCAGAAATATGTTCAGAATCTCAAATCCTCCGTTCAACCCAGAACCGATCCCAAACAAGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCAAAAGAGAAGGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCACCTGGTGTTGATCCCAAGTCCGTATTATGTGAGTTTTTTAAAGTGGGTCAGTGTGCTAAGGGATTCAAATGCAAATTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGACATATACAGTGATAAGCGTGACGATGATACAATGGAAGAGTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAATGAGTATAATCAGAACAAACCAACAGATATTGTATGCAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGTCATGTCCAAATGGTGGTAAGAATTGTATCTATAGACATGCACTTCCACCTGGATATGTTCTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATTGAGGAGGAGATTGAAAAGCAGCGTTCCCAAGTGAAAACTACAACTCCTATAACTACTGAGTTGTTCTATCAATGGAAGAAGAAAAAAATGGACGAGAGAGATGCCAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCCAATGCTAGCTTGTTTGTGGATGATGCTGAAGCATACGACAACTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAACAGGTGGTGCAGACGATGAACTTCCCGATGACATTGACGACGACGATGATGAATTGGACTTGGACGAGTTGAATGAACTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATTAAGGAGCCAGGAGCTGAAGCTTAA

Protein sequence

>MsG0180003627.01.T02

MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEEEKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWSCPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFYQWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPDETEQNGTGSAANNGPSTSATGGADDELPDDIDDDDDELDLDELNELEASLAKTSIQIKEPGAEA*

>MsG0180003627.01.T01

MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEEEKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWSCPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFYQWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPDETEQNGTGSAANNGPSTSATGGADDELPDDIDDDDDELDLDELNELEASLAKTSIQIKEPGAEA*