Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017067.01.T01 | XP_003602914.1 | 92.188 | 128 | 9 | 1 | 1 | 127 | 1 | 128 | 1.42E-75 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017067.01.T01 | G7J540 | 92.188 | 128 | 9 | 1 | 1 | 127 | 1 | 128 | 6.80e-76 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000172.01 | MsG0380017067.01 | 0.811476 | 6.870133e-51 | 4.257005e-48 |
| MsG0180000479.01 | MsG0380017067.01 | 0.817923 | 2.563758e-52 | 1.892098e-49 |
| MsG0180003948.01 | MsG0380017067.01 | 0.813866 | 2.060310e-51 | 1.361176e-48 |
| MsG0180004186.01 | MsG0380017067.01 | 0.819726 | 9.983901e-53 | 7.745009e-50 |
| MsG0180004752.01 | MsG0380017067.01 | 0.822974 | 1.777495e-53 | 1.510589e-50 |
| MsG0180005419.01 | MsG0380017067.01 | 0.807603 | 4.663381e-50 | 2.608463e-47 |
| MsG0180005559.01 | MsG0380017067.01 | 0.804705 | 1.900304e-49 | 9.865879e-47 |
| MsG0180005813.01 | MsG0380017067.01 | 0.829103 | 6.206868e-55 | 6.290193e-52 |
| MsG0180006012.01 | MsG0380017067.01 | 0.806083 | 9.770017e-50 | 5.255158e-47 |
| MsG0180006016.01 | MsG0380017067.01 | 0.811524 | 6.705480e-51 | 4.160293e-48 |
| MsG0180006023.01 | MsG0380017067.01 | 0.816557 | 5.200887e-52 | 3.697184e-49 |
| MsG0180006047.01 | MsG0380017067.01 | 0.804279 | 2.331218e-49 | 1.197076e-46 |
| MsG0180006226.01 | MsG0380017067.01 | -0.815496 | 8.974307e-52 | 6.197551e-49 |
| MsG0280006425.01 | MsG0380017067.01 | 0.816107 | 6.557548e-52 | 4.604783e-49 |
| MsG0280010614.01 | MsG0380017067.01 | 0.818279 | 2.129259e-52 | 1.586804e-49 |
| MsG0380012124.01 | MsG0380017067.01 | 0.825083 | 5.687435e-54 | 5.132184e-51 |
| MsG0380016273.01 | MsG0380017067.01 | 0.822330 | 2.509984e-53 | 2.094434e-50 |
| MsG0380017067.01 | MsG0380017228.01 | 0.806936 | 6.455978e-50 | 3.549263e-47 |
| MsG0380017067.01 | MsG0380017410.01 | 0.825351 | 4.914610e-54 | 4.468474e-51 |
| MsG0380017067.01 | MsG0380017946.01 | 0.804350 | 2.252999e-49 | 1.159039e-46 |
| MsG0380017067.01 | MsG0480018998.01 | 0.826789 | 2.236473e-54 | 2.118521e-51 |
| MsG0380017067.01 | MsG0480019038.01 | 0.826870 | 2.139607e-54 | 2.031491e-51 |
| MsG0380017067.01 | MsG0480019395.01 | 0.835445 | 1.671656e-56 | 2.044570e-53 |
| MsG0380017067.01 | MsG0480019816.01 | 0.813727 | 2.211004e-51 | 1.455289e-48 |
| MsG0380017067.01 | MsG0480020444.01 | 0.800266 | 1.562420e-48 | 7.243468e-46 |
| MsG0380017067.01 | MsG0480020445.01 | 0.825581 | 4.334694e-54 | 3.967088e-51 |
| MsG0380017067.01 | MsG0480021134.01 | 0.820628 | 6.205011e-53 | 4.935096e-50 |
| MsG0380017067.01 | MsG0480021240.01 | 0.800488 | 1.407684e-48 | 6.562862e-46 |
| MsG0380017067.01 | MsG0480021298.01 | 0.813744 | 2.192025e-51 | 1.443380e-48 |
| MsG0380017067.01 | MsG0480022479.01 | 0.838402 | 2.937233e-57 | 3.929850e-54 |
| MsG0380017067.01 | MsG0480022480.01 | 0.834735 | 2.524196e-56 | 3.021839e-53 |
| MsG0380017067.01 | MsG0480022719.01 | 0.805165 | 1.523094e-49 | 8.001580e-47 |
| MsG0380017067.01 | MsG0480023245.01 | 0.816860 | 4.447986e-52 | 3.188397e-49 |
| MsG0380017067.01 | MsG0480023318.01 | 0.803739 | 3.019419e-49 | 1.529130e-46 |
| MsG0380017067.01 | MsG0580024035.01 | 0.825727 | 4.004681e-54 | 3.680387e-51 |
| MsG0380017067.01 | MsG0580024205.01 | 0.829682 | 4.489126e-55 | 4.627795e-52 |
| MsG0380017067.01 | MsG0580024682.01 | 0.800946 | 1.135258e-48 | 5.354837e-46 |
| MsG0380017067.01 | MsG0580025989.01 | 0.830737 | 2.481774e-55 | 2.637848e-52 |
| MsG0380017067.01 | MsG0580027129.01 | 0.810819 | 9.535934e-51 | 5.807026e-48 |
| MsG0380017067.01 | MsG0580029798.01 | 0.801483 | 8.814193e-49 | 4.214167e-46 |
| MsG0380017067.01 | MsG0680030436.01 | 0.825585 | 4.325267e-54 | 3.958994e-51 |
| MsG0380017067.01 | MsG0680030529.01 | 0.817558 | 3.097910e-52 | 2.263508e-49 |
| MsG0380017067.01 | MsG0680035681.01 | 0.811087 | 8.344691e-51 | 5.117839e-48 |
| MsG0380017067.01 | MsG0680035737.01 | 0.805790 | 1.126152e-49 | 6.012232e-47 |
| MsG0380017067.01 | MsG0680035777.01 | 0.829213 | 5.836436e-55 | 5.934675e-52 |
| MsG0380017067.01 | MsG0780037415.01 | 0.802238 | 6.167625e-49 | 3.005870e-46 |
| MsG0380017067.01 | MsG0780037599.01 | 0.884347 | 2.071620e-71 | 1.362140e-67 |
| MsG0380017067.01 | MsG0780038444.01 | 0.826937 | 2.061598e-54 | 1.961431e-51 |
| MsG0380017067.01 | MsG0780038837.01 | 0.816039 | 6.791507e-52 | 4.760339e-49 |
| MsG0380017067.01 | MsG0780041310.01 | 0.814245 | 1.699390e-51 | 1.134363e-48 |
| MsG0380017067.01 | MsG0780041370.01 | 0.809430 | 1.899342e-50 | 1.114957e-47 |
| MsG0380017067.01 | MsG0780041469.01 | 0.801426 | 9.055765e-49 | 4.323346e-46 |
| MsG0380017067.01 | MsG0780041754.01 | 0.804619 | 1.980747e-49 | 1.026028e-46 |
| MsG0380017067.01 | MsG0880042811.01 | 0.824910 | 6.246767e-54 | 5.609287e-51 |
| MsG0380017067.01 | MsG0880042967.01 | 0.826657 | 2.405933e-54 | 2.270435e-51 |
| MsG0380017067.01 | MsG0880043262.01 | 0.830071 | 3.609907e-55 | 3.762923e-52 |
| MsG0380017067.01 | MsG0880043285.01 | 0.803344 | 3.645520e-49 | 1.827476e-46 |
| MsG0380017067.01 | MsG0880043745.01 | 0.804517 | 2.079591e-49 | 1.074383e-46 |
| MsG0380017067.01 | MsG0880043921.01 | 0.830330 | 3.121069e-55 | 3.278068e-52 |
| MsG0380017067.01 | MsG0880044100.01 | 0.811313 | 7.453829e-51 | 4.598476e-48 |
| MsG0380017067.01 | MsG0880044546.01 | 0.804819 | 1.798384e-49 | 9.364973e-47 |
| MsG0380017067.01 | MsG0880045106.01 | 0.800365 | 1.491317e-48 | 6.931319e-46 |
| MsG0380017067.01 | MsG0880045256.01 | 0.800315 | 1.526778e-48 | 7.087207e-46 |
| MsG0380017067.01 | MsG0880046226.01 | 0.834921 | 2.266506e-56 | 2.728974e-53 |
| MsG0380017067.01 | MsG0880046317.01 | 0.823988 | 1.029718e-53 | 9.004747e-51 |
| MsG0380017067.01 | MsG0880046467.01 | 0.806393 | 8.406654e-50 | 4.557563e-47 |
| MsG0380017067.01 | MsG0880046642.01 | 0.803256 | 3.802397e-49 | 1.901856e-46 |
| MsG0380017067.01 | MsG0880046762.01 | 0.814786 | 1.290488e-51 | 8.740515e-49 |
| MsG0380017067.01 | MsG0880047233.01 | 0.820500 | 6.636668e-53 | 5.260237e-50 |
| MsG0380017067.01 | MsG0880047497.01 | 0.817016 | 4.103759e-52 | 2.954362e-49 |
| MsG0280007071.01 | MsG0380017067.01 | 0.815468 | 9.105573e-52 | 6.283287e-49 |
| MsG0280007191.01 | MsG0380017067.01 | 0.806483 | 8.047236e-50 | 4.372888e-47 |
| MsG0280007609.01 | MsG0380017067.01 | 0.814679 | 1.362918e-51 | 9.204569e-49 |
| MsG0280008286.01 | MsG0380017067.01 | 0.834838 | 2.377560e-56 | 2.855551e-53 |
| MsG0280008849.01 | MsG0380017067.01 | 0.801962 | 7.028162e-49 | 3.401128e-46 |
| MsG0280008856.01 | MsG0380017067.01 | 0.827718 | 1.340351e-54 | 1.304556e-51 |
| MsG0280010173.01 | MsG0380017067.01 | 0.809328 | 1.997519e-50 | 1.169406e-47 |
| MsG0280010416.01 | MsG0380017067.01 | 0.815143 | 1.075333e-51 | 7.353698e-49 |
| MsG0280010459.01 | MsG0380017067.01 | 0.834979 | 2.190795e-56 | 2.642513e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017067.01.T01 | MTR_3g100330 | 92.188 | 128 | 9 | 1 | 1 | 127 | 1 | 128 | 1.72e-79 | 234 |
| MsG0380017067.01.T01 | MTR_5g066100 | 67.969 | 128 | 37 | 2 | 1 | 127 | 2 | 126 | 5.17e-49 | 160 |
| MsG0380017067.01.T01 | MTR_4g093930 | 44.800 | 125 | 66 | 2 | 4 | 127 | 5 | 127 | 1.71e-30 | 114 |
| MsG0380017067.01.T01 | MTR_2g009520 | 41.803 | 122 | 67 | 2 | 3 | 123 | 4 | 122 | 1.67e-26 | 103 |
| MsG0380017067.01.T01 | MTR_2g020420 | 44.715 | 123 | 66 | 2 | 1 | 122 | 1 | 122 | 1.07e-22 | 92.4 |
| MsG0380017067.01.T01 | MTR_2g020420 | 44.715 | 123 | 66 | 2 | 1 | 122 | 1 | 122 | 1.25e-22 | 92.4 |
| MsG0380017067.01.T01 | MTR_4g118660 | 41.463 | 123 | 68 | 3 | 1 | 122 | 42 | 161 | 2.02e-20 | 85.9 |
| MsG0380017067.01.T01 | MTR_6g059870 | 37.398 | 123 | 72 | 3 | 1 | 122 | 1 | 119 | 6.10e-17 | 75.9 |
| MsG0380017067.01.T01 | MTR_5g097170 | 35.938 | 128 | 77 | 3 | 1 | 127 | 1 | 124 | 1.69e-16 | 74.7 |
| MsG0380017067.01.T01 | MTR_7g114150 | 37.500 | 128 | 76 | 3 | 1 | 127 | 1 | 125 | 5.96e-16 | 73.2 |
| MsG0380017067.01.T01 | MTR_3g091040 | 37.398 | 123 | 72 | 3 | 1 | 122 | 1 | 119 | 3.15e-15 | 71.2 |
| MsG0380017067.01.T01 | MTR_1g081970 | 37.984 | 129 | 74 | 4 | 1 | 127 | 1 | 125 | 2.83e-14 | 68.6 |
| MsG0380017067.01.T01 | MTR_1g060440 | 37.500 | 128 | 76 | 3 | 1 | 127 | 1 | 125 | 1.01e-13 | 67.0 |
| MsG0380017067.01.T01 | MTR_3g082810 | 33.607 | 122 | 76 | 3 | 1 | 121 | 1 | 118 | 1.79e-13 | 66.2 |
| MsG0380017067.01.T01 | MTR_1g081960 | 37.288 | 118 | 68 | 4 | 1 | 116 | 51 | 164 | 3.60e-12 | 62.0 |
| MsG0380017067.01.T01 | MTR_2g014480 | 49.153 | 59 | 26 | 2 | 68 | 123 | 3 | 60 | 6.27e-11 | 58.5 |
| MsG0380017067.01.T01 | MTR_4g015840 | 50.847 | 59 | 25 | 2 | 68 | 123 | 3 | 60 | 7.69e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017067.01.T01 | AT2G01710 | 56.154 | 130 | 52 | 3 | 2 | 127 | 5 | 133 | 9.26e-37 | 127 |
| MsG0380017067.01.T01 | AT2G01710 | 56.154 | 130 | 52 | 3 | 2 | 127 | 49 | 177 | 1.87e-36 | 127 |
| MsG0380017067.01.T01 | AT5G64360 | 44.355 | 124 | 64 | 4 | 7 | 127 | 17 | 138 | 3.55e-20 | 85.1 |
| MsG0380017067.01.T01 | AT5G64360 | 44.355 | 124 | 64 | 4 | 7 | 127 | 17 | 138 | 4.14e-20 | 85.1 |
| MsG0380017067.01.T01 | AT5G64360 | 44.355 | 124 | 64 | 4 | 7 | 127 | 17 | 138 | 4.14e-20 | 85.1 |
| MsG0380017067.01.T01 | AT5G64360 | 44.355 | 124 | 64 | 4 | 7 | 127 | 17 | 138 | 4.14e-20 | 85.1 |
| MsG0380017067.01.T01 | AT5G64360 | 44.355 | 124 | 64 | 4 | 7 | 127 | 17 | 138 | 4.14e-20 | 85.1 |
| MsG0380017067.01.T01 | AT5G64360 | 44.355 | 124 | 64 | 4 | 7 | 127 | 17 | 138 | 4.14e-20 | 85.1 |
| MsG0380017067.01.T01 | AT5G64360 | 44.355 | 124 | 64 | 4 | 7 | 127 | 17 | 138 | 4.14e-20 | 85.1 |
| MsG0380017067.01.T01 | AT4G19570 | 40.310 | 129 | 72 | 3 | 1 | 128 | 1 | 125 | 1.59e-19 | 83.6 |
| MsG0380017067.01.T01 | AT4G19580 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.89e-19 | 82.0 |
| MsG0380017067.01.T01 | AT5G09540 | 42.063 | 126 | 68 | 4 | 5 | 127 | 11 | 134 | 8.63e-19 | 79.7 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G37380 | 40.650 | 123 | 68 | 3 | 1 | 122 | 1 | 119 | 1.60e-18 | 80.5 |
| MsG0380017067.01.T01 | AT5G53150 | 38.211 | 123 | 71 | 3 | 1 | 122 | 1 | 119 | 3.30e-18 | 79.7 |
| MsG0380017067.01.T01 | AT5G53150 | 38.211 | 123 | 71 | 3 | 1 | 122 | 1 | 119 | 7.79e-18 | 78.6 |
| MsG0380017067.01.T01 | AT5G53150 | 38.211 | 123 | 71 | 3 | 1 | 122 | 1 | 119 | 7.79e-18 | 78.6 |
| MsG0380017067.01.T01 | AT5G53150 | 38.211 | 123 | 71 | 3 | 1 | 122 | 1 | 119 | 7.79e-18 | 78.6 |
| MsG0380017067.01.T01 | AT5G53150 | 38.211 | 123 | 71 | 3 | 1 | 122 | 1 | 119 | 8.06e-18 | 78.6 |
| MsG0380017067.01.T01 | AT5G53150 | 38.211 | 123 | 71 | 3 | 1 | 122 | 1 | 119 | 8.06e-18 | 78.6 |
| MsG0380017067.01.T01 | AT4G19590 | 38.400 | 125 | 73 | 3 | 1 | 124 | 1 | 122 | 1.26e-17 | 77.8 |
| MsG0380017067.01.T01 | AT4G19590 | 38.400 | 125 | 73 | 3 | 1 | 124 | 1 | 122 | 1.36e-17 | 77.4 |
| MsG0380017067.01.T01 | AT3G04980 | 40.625 | 128 | 71 | 3 | 1 | 127 | 1 | 124 | 6.07e-17 | 76.3 |
| MsG0380017067.01.T01 | AT3G04980 | 40.625 | 128 | 71 | 3 | 1 | 127 | 1 | 124 | 6.07e-17 | 76.3 |
| MsG0380017067.01.T01 | AT3G06340 | 36.585 | 123 | 74 | 3 | 1 | 122 | 1 | 120 | 2.29e-16 | 74.3 |
| MsG0380017067.01.T01 | AT3G06340 | 36.585 | 123 | 74 | 3 | 1 | 122 | 1 | 120 | 2.29e-16 | 74.3 |
| MsG0380017067.01.T01 | AT3G06340 | 36.585 | 123 | 74 | 3 | 1 | 122 | 1 | 120 | 2.29e-16 | 74.3 |
| MsG0380017067.01.T01 | AT3G06340 | 36.585 | 123 | 74 | 3 | 1 | 122 | 1 | 120 | 2.29e-16 | 74.3 |
| MsG0380017067.01.T01 | AT1G62970 | 39.167 | 120 | 70 | 3 | 7 | 123 | 17 | 136 | 2.52e-16 | 74.3 |
| MsG0380017067.01.T01 | AT2G05230 | 34.109 | 129 | 80 | 3 | 1 | 128 | 1 | 125 | 1.05e-15 | 72.4 |
| MsG0380017067.01.T01 | AT2G05250 | 34.109 | 129 | 80 | 3 | 1 | 128 | 1 | 125 | 1.05e-15 | 72.4 |
| MsG0380017067.01.T01 | AT4G19590 | 37.719 | 114 | 67 | 3 | 12 | 124 | 1 | 111 | 3.34e-15 | 70.9 |
| MsG0380017067.01.T01 | AT5G27240 | 41.129 | 124 | 66 | 4 | 1 | 122 | 1 | 119 | 1.35e-14 | 69.3 |
| MsG0380017067.01.T01 | AT5G27240 | 41.129 | 124 | 66 | 4 | 1 | 122 | 1 | 119 | 1.35e-14 | 69.3 |
| MsG0380017067.01.T01 | AT5G27240 | 41.129 | 124 | 66 | 4 | 1 | 122 | 1 | 119 | 1.35e-14 | 69.3 |
| MsG0380017067.01.T01 | AT2G25560 | 35.772 | 123 | 74 | 3 | 1 | 122 | 1 | 119 | 1.43e-14 | 69.3 |
| MsG0380017067.01.T01 | AT3G04980 | 40.909 | 110 | 60 | 3 | 19 | 127 | 1 | 106 | 1.66e-13 | 66.2 |
| MsG0380017067.01.T01 | AT5G18750 | 36.885 | 122 | 71 | 4 | 3 | 122 | 2 | 119 | 4.64e-13 | 65.1 |
| MsG0380017067.01.T01 | AT5G37440 | 35.537 | 121 | 69 | 4 | 9 | 128 | 21 | 133 | 1.15e-11 | 60.5 |
Find 26 sgRNAs with CRISPR-Local
Find 27 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCGAAGCAGAACGGTTAC+TGG | 0.326509 | 3:-91555794 | MsG0380017067.01.T01:CDS |
| TTCCAGTAACCGTTCTGCTT+CGG | 0.360483 | 3:+91555792 | None:intergenic |
| CAAACTCGTTAAGGATGCTT+GGG | 0.376604 | 3:-91555479 | MsG0380017067.01.T01:CDS |
| GTAAGAAACGGATTCTTATC+AGG | 0.393315 | 3:+91555514 | None:intergenic |
| GACTCGCTTCAAACTCGTTA+AGG | 0.423383 | 3:-91555488 | MsG0380017067.01.T01:CDS |
| GAAACCGAACCTCTTCTTGA+AGG | 0.424732 | 3:-91555703 | MsG0380017067.01.T01:CDS |
| CCTGTGAATTGCGATCAATT+TGG | 0.429303 | 3:+91555587 | None:intergenic |
| TCAAACTCGTTAAGGATGCT+TGG | 0.443507 | 3:-91555480 | MsG0380017067.01.T01:CDS |
| GGAACCTTCAAGAAGAGGTT+CGG | 0.467349 | 3:+91555699 | None:intergenic |
| GCAGAACGGTTACTGGAAAT+CGG | 0.494239 | 3:-91555787 | MsG0380017067.01.T01:CDS |
| CCAAATTGATCGCAATTCAC+AGG | 0.501908 | 3:-91555587 | MsG0380017067.01.T01:CDS |
| AAGCGAGTCAGCGTAAGAAA+CGG | 0.502766 | 3:+91555502 | None:intergenic |
| TGCTATGTTGAGTTGTTGAC+CGG | 0.508926 | 3:+91555442 | None:intergenic |
| TGGTGGTTGTTGAGATTGAG+AGG | 0.510306 | 3:+91555631 | None:intergenic |
| GAAGAAGAAGAGCGAGAGTA+CGG | 0.517568 | 3:+91555539 | None:intergenic |
| TCAACAACCACCACCTCGAT+TGG | 0.523308 | 3:-91555621 | MsG0380017067.01.T01:CDS |
| CGGCGTACCAATCGAGGTGG+TGG | 0.534499 | 3:+91555614 | None:intergenic |
| GGAGAACGGCGTACCAATCG+AGG | 0.566993 | 3:+91555608 | None:intergenic |
| TGATCGGAACCTTCAAGAAG+AGG | 0.608536 | 3:+91555694 | None:intergenic |
| ATTGCGATCAATTTGGAGAA+CGG | 0.611753 | 3:+91555594 | None:intergenic |
| AACAATAGCGAGGATCTGAT+CGG | 0.616293 | 3:+91555678 | None:intergenic |
| TGTTGATGTTCTCGAAGCTG+CGG | 0.616667 | 3:-91555659 | MsG0380017067.01.T01:CDS |
| AAACTCGTTAAGGATGCTTG+GGG | 0.642473 | 3:-91555478 | MsG0380017067.01.T01:CDS |
| CAAGCAAAGCCGAAGCAGAA+CGG | 0.656161 | 3:-91555801 | MsG0380017067.01.T01:CDS |
| CGAGAACATCAACAATAGCG+AGG | 0.683416 | 3:+91555668 | None:intergenic |
| GAACGGCGTACCAATCGAGG+TGG | 0.714852 | 3:+91555611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTACAAAAACGAGATCTCAA+AGG | - | Chr3:91555498-91555517 | MsG0380017067.01.T01:CDS | 30.0% | |
| ATTGCGATCAATTTGGAGAA+CGG | + | Chr3:91555661-91555680 | None:intergenic | 35.0% | |
| ! | GTAAGAAACGGATTCTTATC+AGG | + | Chr3:91555741-91555760 | None:intergenic | 35.0% |
| AAACTCGTTAAGGATGCTTG+GGG | - | Chr3:91555774-91555793 | MsG0380017067.01.T01:CDS | 40.0% | |
| AACAATAGCGAGGATCTGAT+CGG | + | Chr3:91555577-91555596 | None:intergenic | 40.0% | |
| CAAACTCGTTAAGGATGCTT+GGG | - | Chr3:91555773-91555792 | MsG0380017067.01.T01:CDS | 40.0% | |
| CCAAATTGATCGCAATTCAC+AGG | - | Chr3:91555665-91555684 | MsG0380017067.01.T01:CDS | 40.0% | |
| CCTGTGAATTGCGATCAATT+TGG | + | Chr3:91555668-91555687 | None:intergenic | 40.0% | |
| TCAAACTCGTTAAGGATGCT+TGG | - | Chr3:91555772-91555791 | MsG0380017067.01.T01:CDS | 40.0% | |
| AAGCGAGTCAGCGTAAGAAA+CGG | + | Chr3:91555753-91555772 | None:intergenic | 45.0% | |
| CGAGAACATCAACAATAGCG+AGG | + | Chr3:91555587-91555606 | None:intergenic | 45.0% | |
| GAAACCGAACCTCTTCTTGA+AGG | - | Chr3:91555549-91555568 | MsG0380017067.01.T01:CDS | 45.0% | |
| GAAGAAGAAGAGCGAGAGTA+CGG | + | Chr3:91555716-91555735 | None:intergenic | 45.0% | |
| GACTCGCTTCAAACTCGTTA+AGG | - | Chr3:91555764-91555783 | MsG0380017067.01.T01:CDS | 45.0% | |
| GCAGAACGGTTACTGGAAAT+CGG | - | Chr3:91555465-91555484 | MsG0380017067.01.T01:CDS | 45.0% | |
| GGAACCTTCAAGAAGAGGTT+CGG | + | Chr3:91555556-91555575 | None:intergenic | 45.0% | |
| TGATCGGAACCTTCAAGAAG+AGG | + | Chr3:91555561-91555580 | None:intergenic | 45.0% | |
| TGGTGGTTGTTGAGATTGAG+AGG | + | Chr3:91555624-91555643 | None:intergenic | 45.0% | |
| TGTTGATGTTCTCGAAGCTG+CGG | - | Chr3:91555593-91555612 | MsG0380017067.01.T01:CDS | 45.0% | |
| TTCCAGTAACCGTTCTGCTT+CGG | + | Chr3:91555463-91555482 | None:intergenic | 45.0% | |
| !! | TTGGGGTGTTTTGTCTGATC+CGG | - | Chr3:91555791-91555810 | MsG0380017067.01.T01:CDS | 45.0% |
| CAAGCAAAGCCGAAGCAGAA+CGG | - | Chr3:91555451-91555470 | MsG0380017067.01.T01:CDS | 50.0% | |
| TCAACAACCACCACCTCGAT+TGG | - | Chr3:91555631-91555650 | MsG0380017067.01.T01:CDS | 50.0% | |
| AGCCGAAGCAGAACGGTTAC+TGG | - | Chr3:91555458-91555477 | MsG0380017067.01.T01:CDS | 55.0% | |
| GAACGGCGTACCAATCGAGG+TGG | + | Chr3:91555644-91555663 | None:intergenic | 60.0% | |
| GGAGAACGGCGTACCAATCG+AGG | + | Chr3:91555647-91555666 | None:intergenic | 60.0% | |
| CGGCGTACCAATCGAGGTGG+TGG | + | Chr3:91555641-91555660 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 91555444 | 91555830 | 91555444 | ID=MsG0380017067.01;Name=MsG0380017067.01 |
| Chr3 | mRNA | 91555444 | 91555830 | 91555444 | ID=MsG0380017067.01.T01;Parent=MsG0380017067.01;Name=MsG0380017067.01.T01;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|128 |
| Chr3 | exon | 91555444 | 91555830 | 91555444 | ID=MsG0380017067.01.T01:exon:20697;Parent=MsG0380017067.01.T01 |
| Chr3 | CDS | 91555444 | 91555830 | 91555444 | ID=MsG0380017067.01.T01:cds;Parent=MsG0380017067.01.T01 |
| Gene Sequence |
| Protein sequence |
