Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019730.01.T01 | RHN59886.1 | 97.959 | 147 | 3 | 0 | 129 | 275 | 162 | 308 | 7.22E-103 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019730.01.T01 | Q9SIV9 | 86.395 | 147 | 20 | 0 | 129 | 275 | 289 | 435 | 1.58E-90 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019730.01.T01 | A0A396I2N3 | 97.959 | 147 | 3 | 0 | 129 | 275 | 162 | 308 | 3.45e-103 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048874.01 | MsG0480019730.01 | 0.800540 | 1.374069e-48 | 6.414413e-46 |
| MsG0180000470.01 | MsG0480019730.01 | 0.838795 | 2.326006e-57 | 3.149495e-54 |
| MsG0180000650.01 | MsG0480019730.01 | 0.814955 | 1.183563e-51 | 8.052953e-49 |
| MsG0180002089.01 | MsG0480019730.01 | 0.825161 | 5.451993e-54 | 4.930618e-51 |
| MsG0180002195.01 | MsG0480019730.01 | 0.809037 | 2.306751e-50 | 1.339911e-47 |
| MsG0180002234.01 | MsG0480019730.01 | 0.808683 | 2.746103e-50 | 1.580145e-47 |
| MsG0180002282.01 | MsG0480019730.01 | 0.806674 | 7.333012e-50 | 4.004115e-47 |
| MsG0180004264.01 | MsG0480019730.01 | 0.806405 | 8.360503e-50 | 4.533888e-47 |
| MsG0280011032.01 | MsG0480019730.01 | 0.810457 | 1.141710e-50 | 6.885324e-48 |
| MsG0380011759.01 | MsG0480019730.01 | 0.823377 | 1.431548e-53 | 1.230356e-50 |
| MsG0380012085.01 | MsG0480019730.01 | 0.812893 | 3.371288e-51 | 2.169338e-48 |
| MsG0480019435.01 | MsG0480019730.01 | 0.806048 | 9.938333e-50 | 5.340998e-47 |
| MsG0480019730.01 | MsG0480019732.01 | 0.819177 | 1.332001e-52 | 1.017577e-49 |
| MsG0480019730.01 | MsG0480021853.01 | 0.800324 | 1.520480e-48 | 7.059533e-46 |
| MsG0480019730.01 | MsG0480022259.01 | 0.805188 | 1.506184e-49 | 7.917412e-47 |
| MsG0480019730.01 | MsG0480023248.01 | 0.804150 | 2.480313e-49 | 1.269441e-46 |
| MsG0480019730.01 | MsG0580024363.01 | -0.808878 | 2.494116e-50 | 1.442560e-47 |
| MsG0480019730.01 | MsG0580024621.01 | 0.822359 | 2.471223e-53 | 2.063901e-50 |
| MsG0480019730.01 | MsG0580027687.01 | 0.852031 | 6.027672e-61 | 1.243258e-57 |
| MsG0480019730.01 | MsG0580027688.01 | 0.859542 | 3.847716e-63 | 1.019811e-59 |
| MsG0480019730.01 | MsG0580027833.01 | 0.803624 | 3.189176e-49 | 1.610333e-46 |
| MsG0480019730.01 | MsG0580027922.01 | 0.818062 | 2.384895e-52 | 1.766713e-49 |
| MsG0480019730.01 | MsG0580029554.01 | 0.804709 | 1.896558e-49 | 9.847522e-47 |
| MsG0480019730.01 | MsG0680030800.01 | 0.812790 | 3.550517e-51 | 2.278359e-48 |
| MsG0480019730.01 | MsG0680032801.01 | 0.853544 | 2.228503e-61 | 4.832220e-58 |
| MsG0480019730.01 | MsG0680032844.01 | 0.802764 | 4.805608e-49 | 2.373748e-46 |
| MsG0480019730.01 | MsG0680032996.01 | 0.805651 | 1.204298e-49 | 6.406449e-47 |
| MsG0480019730.01 | MsG0680033379.01 | 0.837494 | 5.027700e-57 | 6.542669e-54 |
| MsG0480019730.01 | MsG0680035828.01 | 0.819827 | 9.464061e-53 | 7.362595e-50 |
| MsG0480019730.01 | MsG0780035948.01 | 0.803925 | 2.761603e-49 | 1.405381e-46 |
| MsG0480019730.01 | MsG0780037457.01 | 0.811399 | 7.140297e-51 | 4.415395e-48 |
| MsG0480019730.01 | MsG0780038439.01 | 0.812017 | 5.236964e-51 | 3.292030e-48 |
| MsG0480019730.01 | MsG0780039178.01 | 0.810439 | 1.152271e-50 | 6.945558e-48 |
| MsG0480019730.01 | MsG0780039867.01 | -0.809127 | 2.206568e-50 | 1.284855e-47 |
| MsG0480019730.01 | MsG0780040576.01 | -0.818528 | 1.870637e-52 | 1.403756e-49 |
| MsG0480019730.01 | MsG0780040596.01 | 0.809308 | 2.017482e-50 | 1.180421e-47 |
| MsG0480019730.01 | MsG0780040788.01 | 0.815396 | 9.445241e-52 | 6.504477e-49 |
| MsG0480019730.01 | MsG0880042161.01 | 0.825815 | 3.814795e-54 | 3.514858e-51 |
| MsG0480019730.01 | MsG0880042454.01 | 0.849967 | 2.301099e-60 | 4.438578e-57 |
| MsG0480019730.01 | MsG0880043941.01 | 0.806904 | 6.557593e-50 | 3.602124e-47 |
| MsG0480019730.01 | MsG0880044323.01 | 0.809409 | 1.919610e-50 | 1.126231e-47 |
| MsG0480019730.01 | MsG0880044573.01 | 0.806145 | 9.481116e-50 | 5.107825e-47 |
| MsG0480019730.01 | MsG0880044574.01 | 0.800743 | 1.249126e-48 | 5.861375e-46 |
| MsG0380016475.01 | MsG0480019730.01 | 0.813212 | 2.869412e-51 | 1.862243e-48 |
| MsG0380017822.01 | MsG0480019730.01 | 0.806906 | 6.551228e-50 | 3.598831e-47 |
| MsG0280006588.01 | MsG0480019730.01 | 0.802261 | 6.100315e-49 | 2.974806e-46 |
| MsG0280008894.01 | MsG0480019730.01 | 0.813457 | 2.535442e-51 | 1.656693e-48 |
| MsG0280009646.01 | MsG0480019730.01 | 0.824648 | 7.201401e-54 | 6.418230e-51 |
| MsG0280010443.01 | MsG0480019730.01 | 0.807854 | 4.123788e-50 | 2.321827e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019730.01.T01 | MTR_0188s0020 | 97.959 | 147 | 3 | 0 | 129 | 275 | 291 | 437 | 9.53e-105 | 313 |
| MsG0480019730.01.T01 | MTR_4g037105 | 82.993 | 147 | 25 | 0 | 129 | 275 | 285 | 431 | 1.13e-90 | 277 |
| MsG0480019730.01.T01 | MTR_1g112630 | 82.313 | 147 | 26 | 0 | 129 | 275 | 287 | 433 | 2.11e-89 | 274 |
| MsG0480019730.01.T01 | MTR_4g115670 | 72.028 | 143 | 40 | 0 | 130 | 272 | 285 | 427 | 5.47e-72 | 229 |
| MsG0480019730.01.T01 | MTR_5g092360 | 52.027 | 148 | 60 | 2 | 126 | 273 | 261 | 397 | 7.64e-43 | 152 |
| MsG0480019730.01.T01 | MTR_3g051240 | 53.147 | 143 | 56 | 2 | 131 | 273 | 260 | 391 | 1.42e-42 | 151 |
| MsG0480019730.01.T01 | MTR_7g104360 | 51.064 | 141 | 56 | 3 | 134 | 272 | 267 | 396 | 2.73e-40 | 145 |
| MsG0480019730.01.T01 | MTR_1g060360 | 47.482 | 139 | 62 | 1 | 134 | 272 | 267 | 394 | 2.42e-38 | 140 |
| MsG0480019730.01.T01 | MTR_7g104330 | 47.143 | 140 | 63 | 1 | 134 | 273 | 275 | 403 | 1.02e-37 | 139 |
| MsG0480019730.01.T01 | MTR_3g083810 | 41.714 | 175 | 55 | 3 | 134 | 272 | 342 | 505 | 1.28e-35 | 134 |
| MsG0480019730.01.T01 | MTR_3g083820 | 42.286 | 175 | 54 | 4 | 134 | 272 | 342 | 505 | 9.64e-35 | 132 |
| MsG0480019730.01.T01 | MTR_7g056403 | 40.571 | 175 | 57 | 3 | 134 | 272 | 341 | 504 | 1.66e-33 | 129 |
| MsG0480019730.01.T01 | MTR_6g013050 | 38.506 | 174 | 61 | 3 | 134 | 272 | 342 | 504 | 2.95e-33 | 128 |
| MsG0480019730.01.T01 | MTR_6g013050 | 38.095 | 168 | 58 | 3 | 134 | 266 | 342 | 498 | 2.07e-31 | 122 |
| MsG0480019730.01.T01 | MTR_4g037670 | 31.677 | 161 | 83 | 6 | 134 | 282 | 474 | 619 | 2.02e-12 | 67.8 |
| MsG0480019730.01.T01 | MTR_5g092450 | 46.774 | 62 | 31 | 1 | 223 | 284 | 23 | 82 | 2.62e-11 | 59.3 |
| MsG0480019730.01.T01 | MTR_3g074970 | 33.108 | 148 | 84 | 7 | 134 | 274 | 348 | 487 | 4.37e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019730.01.T01 | AT2G16430 | 86.395 | 147 | 20 | 0 | 129 | 275 | 169 | 315 | 5.96e-93 | 279 |
| MsG0480019730.01.T01 | AT2G16430 | 86.395 | 147 | 20 | 0 | 129 | 275 | 289 | 435 | 1.61e-91 | 280 |
| MsG0480019730.01.T01 | AT4G36350 | 75.172 | 145 | 36 | 0 | 129 | 273 | 285 | 429 | 1.79e-80 | 251 |
| MsG0480019730.01.T01 | AT2G27190 | 67.442 | 172 | 50 | 1 | 110 | 275 | 265 | 436 | 1.07e-78 | 246 |
| MsG0480019730.01.T01 | AT1G56360 | 73.611 | 144 | 38 | 0 | 129 | 272 | 285 | 428 | 1.95e-78 | 246 |
| MsG0480019730.01.T01 | AT2G18130 | 72.222 | 144 | 40 | 0 | 130 | 273 | 267 | 410 | 3.11e-77 | 242 |
| MsG0480019730.01.T01 | AT3G46120 | 66.061 | 165 | 53 | 2 | 109 | 273 | 192 | 353 | 2.09e-74 | 233 |
| MsG0480019730.01.T01 | AT5G34850 | 70.629 | 143 | 42 | 0 | 130 | 272 | 284 | 426 | 7.24e-71 | 226 |
| MsG0480019730.01.T01 | AT3G20500 | 51.748 | 143 | 58 | 1 | 130 | 272 | 263 | 394 | 4.51e-44 | 155 |
| MsG0480019730.01.T01 | AT3G52780 | 52.482 | 141 | 54 | 2 | 134 | 272 | 267 | 396 | 1.83e-42 | 151 |
| MsG0480019730.01.T01 | AT3G52810 | 48.344 | 151 | 61 | 2 | 129 | 273 | 261 | 400 | 3.81e-40 | 145 |
| MsG0480019730.01.T01 | AT3G52820 | 47.143 | 140 | 63 | 1 | 134 | 273 | 268 | 396 | 1.63e-37 | 138 |
| MsG0480019730.01.T01 | AT3G07130 | 40.698 | 172 | 58 | 4 | 134 | 272 | 335 | 495 | 2.98e-31 | 122 |
| MsG0480019730.01.T01 | AT4G13700 | 50.442 | 113 | 45 | 2 | 134 | 246 | 336 | 437 | 5.48e-30 | 118 |
| MsG0480019730.01.T01 | AT2G32770 | 35.638 | 188 | 78 | 4 | 117 | 272 | 309 | 485 | 4.17e-29 | 116 |
| MsG0480019730.01.T01 | AT2G32770 | 38.012 | 171 | 63 | 4 | 134 | 272 | 355 | 514 | 1.41e-28 | 115 |
| MsG0480019730.01.T01 | AT3G07130 | 34.146 | 205 | 58 | 5 | 134 | 272 | 335 | 528 | 3.04e-25 | 105 |
| MsG0480019730.01.T01 | AT2G32770 | 36.145 | 166 | 63 | 4 | 134 | 267 | 274 | 428 | 3.60e-25 | 104 |
| MsG0480019730.01.T01 | AT4G13700 | 55.385 | 65 | 29 | 0 | 134 | 198 | 336 | 400 | 2.72e-18 | 84.7 |
| MsG0480019730.01.T01 | AT3G52780 | 52.857 | 70 | 31 | 1 | 134 | 201 | 267 | 336 | 2.88e-18 | 84.3 |
Find 55 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCATATAATATCGTAAA+TGG | 0.292313 | 4:-25988702 | MsG0480019730.01.T01:CDS |
| GAGAAACTTTCTGTTCTTCT+TGG | 0.301378 | 4:+25990384 | None:intergenic |
| AGGTTTCAAACCTTAGTTTC+TGG | 0.310018 | 4:-25990734 | MsG0480019730.01.T01:CDS |
| GAGTTTGGAGTTACCCCTTC+TGG | 0.331359 | 4:+25990360 | None:intergenic |
| CTTCTCTCTGTTCAATTATG+AGG | 0.333568 | 4:-25990851 | MsG0480019730.01.T01:CDS |
| AAAGTTGATGTTGTGTTTGC+TGG | 0.344435 | 4:-25988849 | MsG0480019730.01.T01:CDS |
| TCTCAAACAACTTCAATATC+TGG | 0.347931 | 4:-25990407 | MsG0480019730.01.T01:CDS |
| GGTTTCAAACCTTAGTTTCT+GGG | 0.363723 | 4:-25990733 | MsG0480019730.01.T01:CDS |
| AAGAGCTACCAAGAGTTAAC+AGG | 0.379038 | 4:-25988989 | MsG0480019730.01.T01:CDS |
| CTGTTAAGAGTGATTCCCTT+TGG | 0.403017 | 4:-25988320 | MsG0480019730.01.T01:CDS |
| GCATTTAGAGAAGCCAGCTT+TGG | 0.403959 | 4:-25988413 | MsG0480019730.01.T01:CDS |
| AATCTGTAGCCCAGAAACTA+AGG | 0.442655 | 4:+25990724 | None:intergenic |
| TTCTCTCTGTTCAATTATGA+GGG | 0.471968 | 4:-25990850 | MsG0480019730.01.T01:CDS |
| AGATGGCCATTCAGTAGATC+TGG | 0.474347 | 4:+25990429 | None:intergenic |
| GGAGATGGAGGGAATATTGA+AGG | 0.475816 | 4:-25988630 | MsG0480019730.01.T01:CDS |
| TGGAGGGAATATTGAAGGCT+TGG | 0.478696 | 4:-25988625 | MsG0480019730.01.T01:CDS |
| TCTCCAATGTTTATGTATAC+CGG | 0.496808 | 4:+25988648 | None:intergenic |
| TCTCTAAATGCCGAGTACTC+TGG | 0.513274 | 4:+25988425 | None:intergenic |
| AGGACACATGCTTACATAGC+TGG | 0.517686 | 4:-25988365 | MsG0480019730.01.T01:CDS |
| TCTTCAAGCCATGTGTATTG+TGG | 0.521338 | 4:+25989011 | None:intergenic |
| TGAGAGTAATGTTTGAGTCA+TGG | 0.529431 | 4:-25988884 | MsG0480019730.01.T01:CDS |
| TATTGAAGTTGTTTGAGAGA+TGG | 0.529872 | 4:+25990412 | None:intergenic |
| CCAAATCTATTGAAAACCAA+AGG | 0.537997 | 4:+25988304 | None:intergenic |
| TGTAAAAGATCTATCAGCTC+CGG | 0.538281 | 4:-25988667 | MsG0480019730.01.T01:CDS |
| CAGAAAGTTTCTCGCCAGAA+GGG | 0.542147 | 4:-25990374 | MsG0480019730.01.T01:CDS |
| TCAAAGTGGTTGATCTGAAG+AGG | 0.545228 | 4:-25990477 | MsG0480019730.01.T01:CDS |
| ACAGAAAGTTTCTCGCCAGA+AGG | 0.546568 | 4:-25990375 | MsG0480019730.01.T01:CDS |
| TACATAAACATTGGAGATGG+AGG | 0.548402 | 4:-25988642 | MsG0480019730.01.T01:CDS |
| ATCTTTCGTAGGCATGTACA+TGG | 0.549448 | 4:+25988826 | None:intergenic |
| CAAATCTATTGAAAACCAAA+GGG | 0.549572 | 4:+25988305 | None:intergenic |
| ATCATAGCTCTTTCATCCAA+AGG | 0.552433 | 4:-25990516 | MsG0480019730.01.T01:CDS |
| TTCAATTATGAGGGAGCAAG+AGG | 0.554949 | 4:-25990841 | MsG0480019730.01.T01:CDS |
| ACAGCTATCATTACATGGAA+GGG | 0.559696 | 4:-25988914 | MsG0480019730.01.T01:CDS |
| AACAGCTATCATTACATGGA+AGG | 0.564929 | 4:-25988915 | MsG0480019730.01.T01:CDS |
| ACAACCACAACCAGAGTACT+CGG | 0.573517 | 4:-25988435 | MsG0480019730.01.T01:CDS |
| TTCGAACCAGATCTACTGAA+TGG | 0.576145 | 4:-25990435 | MsG0480019730.01.T01:CDS |
| ACTAGTGAGGAGATGTACTC+AGG | 0.581512 | 4:-25990754 | MsG0480019730.01.T01:CDS |
| CAGCTATCATTACATGGAAG+GGG | 0.582038 | 4:-25988913 | MsG0480019730.01.T01:CDS |
| TTGTTCTCATGCATTCACCT+TGG | 0.582761 | 4:-25988947 | MsG0480019730.01.T01:CDS |
| TGAGGATGATGAAACTAGTG+AGG | 0.587294 | 4:-25990767 | MsG0480019730.01.T01:CDS |
| GTATACATAAACATTGGAGA+TGG | 0.590351 | 4:-25988645 | MsG0480019730.01.T01:CDS |
| TAGCAACAGCTATCATTACA+TGG | 0.590375 | 4:-25988919 | MsG0480019730.01.T01:CDS |
| AATGCCGAGTACTCTGGTTG+TGG | 0.591969 | 4:+25988431 | None:intergenic |
| GCTCCGGTATACATAAACAT+TGG | 0.596986 | 4:-25988651 | MsG0480019730.01.T01:CDS |
| GGTACTTACAGATCTTTCGT+AGG | 0.602509 | 4:+25988815 | None:intergenic |
| AGAAAGTTTCTCGCCAGAAG+GGG | 0.614693 | 4:-25990373 | MsG0480019730.01.T01:intron |
| AGTATGAGTTATTCAAGATG+AGG | 0.622441 | 4:-25990785 | MsG0480019730.01.T01:CDS |
| ACATAAACATTGGAGATGGA+GGG | 0.632691 | 4:-25988641 | MsG0480019730.01.T01:CDS |
| CTCATACTGATGTACAAGCA+AGG | 0.633695 | 4:+25990800 | None:intergenic |
| AGCTGGCATAGAAATCAAGA+TGG | 0.640995 | 4:-25988348 | MsG0480019730.01.T01:CDS |
| AGCAAACATAGCTTTCGCAG+TGG | 0.662600 | 4:+25990872 | None:intergenic |
| AGTCATCAAAACTCTCAAAG+TGG | 0.668906 | 4:-25990491 | MsG0480019730.01.T01:CDS |
| AATATACACCACAATACACA+TGG | 0.674739 | 4:-25989019 | MsG0480019730.01.T01:CDS |
| TGCATGAGAACAATCAACCA+AGG | 0.682000 | 4:+25988957 | None:intergenic |
| TAGCTGTTGCTATTATACCA+AGG | 0.710700 | 4:+25988930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAACAATACTTAATAT+TGG | - | Chr4:25990635-25990654 | MsG0480019730.01.T01:intron | 10.0% |
| !! | AAATTATTACAAGGATTTAA+AGG | + | Chr4:25989950-25989969 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAATATCTGATT+TGG | - | Chr4:25989225-25989244 | MsG0480019730.01.T01:intron | 15.0% |
| !!! | ATTTTATTTTTTACTTCAGT+AGG | + | Chr4:25989979-25989998 | None:intergenic | 15.0% |
| !!! | CAATTTTTGACATAAAAAAT+AGG | - | Chr4:25990810-25990829 | MsG0480019730.01.T01:CDS | 15.0% |
| !!! | TTTTATTTTTTACTTCAGTA+GGG | + | Chr4:25989978-25989997 | None:intergenic | 15.0% |
| !! | ATCGTTTATGATAAGTATAT+TGG | + | Chr4:25990404-25990423 | None:intergenic | 20.0% |
| !! | ATTGCATATAATATCGTAAA+TGG | - | Chr4:25990493-25990512 | MsG0480019730.01.T01:CDS | 20.0% |
| !!! | AATAAATCTTCATTTTTCTC+AGG | - | Chr4:25990151-25990170 | MsG0480019730.01.T01:intron | 20.0% |
| !!! | CTTGAAGATTTTATTATATC+TGG | - | Chr4:25989403-25989422 | MsG0480019730.01.T01:intron | 20.0% |
| ! | AAAAATCCACTATTAGATGT+TGG | + | Chr4:25989885-25989904 | None:intergenic | 25.0% |
| ! | ATGAATATGATTTGAATTGC+AGG | - | Chr4:25990732-25990751 | MsG0480019730.01.T01:CDS | 25.0% |
| ! | CTTATTGTGTAAACTTGTAA+AGG | - | Chr4:25990074-25990093 | MsG0480019730.01.T01:intron | 25.0% |
| ! | GAGTCATTAAGTTTCATATA+TGG | + | Chr4:25990610-25990629 | None:intergenic | 25.0% |
| ! | TTAAGCATTTACAAGAACAA+TGG | - | Chr4:25989455-25989474 | MsG0480019730.01.T01:intron | 25.0% |
| !! | ATATTTTACAAAACAGTGTG+TGG | + | Chr4:25989855-25989874 | None:intergenic | 25.0% |
| !! | ATTCACAACAAGATTTTAGA+TGG | + | Chr4:25989519-25989538 | None:intergenic | 25.0% |
| !! | TCAAATAGAATTGATTCCAT+TGG | + | Chr4:25989816-25989835 | None:intergenic | 25.0% |
| AAAACCTTCTTTGTACCAAT+GGG | - | Chr4:25989556-25989575 | MsG0480019730.01.T01:intron | 30.0% | |
| AATACCATATGCTGAATATG+AGG | + | Chr4:25989729-25989748 | None:intergenic | 30.0% | |
| AATATACACCACAATACACA+TGG | - | Chr4:25990176-25990195 | MsG0480019730.01.T01:intron | 30.0% | |
| AATCTTCAAGAGCAATTTCA+TGG | + | Chr4:25989393-25989412 | None:intergenic | 30.0% | |
| AATTTGACCTTGTAACATGA+AGG | + | Chr4:25990016-25990035 | None:intergenic | 30.0% | |
| ACATACATGCATTTCACATA+TGG | - | Chr4:25989771-25989790 | MsG0480019730.01.T01:intron | 30.0% | |
| AGCAATTTCATGGTTACTTA+AGG | + | Chr4:25989383-25989402 | None:intergenic | 30.0% | |
| AGGGACGTTAAATTATTACA+AGG | + | Chr4:25989959-25989978 | None:intergenic | 30.0% | |
| AGTATGAGTTATTCAAGATG+AGG | - | Chr4:25988410-25988429 | MsG0480019730.01.T01:CDS | 30.0% | |
| ATCTTCAAAGAGAAAGTCAA+AGG | - | Chr4:25988922-25988941 | MsG0480019730.01.T01:CDS | 30.0% | |
| ATTTGACCTTGTAACATGAA+GGG | + | Chr4:25990015-25990034 | None:intergenic | 30.0% | |
| ATTTGAGTAAGAACCAATGA+TGG | - | Chr4:25989196-25989215 | MsG0480019730.01.T01:intron | 30.0% | |
| GTATACATAAACATTGGAGA+TGG | - | Chr4:25990550-25990569 | MsG0480019730.01.T01:intron | 30.0% | |
| TAAATACGTATGAACAACGA+TGG | - | Chr4:25990676-25990695 | MsG0480019730.01.T01:intron | 30.0% | |
| TATTGAAGTTGTTTGAGAGA+TGG | + | Chr4:25988786-25988805 | None:intergenic | 30.0% | |
| TCAAGAAAAGAAGATCAGAA+GGG | - | Chr4:25988856-25988875 | MsG0480019730.01.T01:CDS | 30.0% | |
| TCTCAAACAACTTCAATATC+TGG | - | Chr4:25988788-25988807 | MsG0480019730.01.T01:intron | 30.0% | |
| TCTCCAATGTTTATGTATAC+CGG | + | Chr4:25990550-25990569 | None:intergenic | 30.0% | |
| TTAACAGGAAAAAAACTCCT+TGG | - | Chr4:25990221-25990240 | MsG0480019730.01.T01:intron | 30.0% | |
| TTCTCTCTGTTCAATTATGA+GGG | - | Chr4:25988345-25988364 | MsG0480019730.01.T01:CDS | 30.0% | |
| TTTACACCAACATCTAATAG+TGG | - | Chr4:25989876-25989895 | MsG0480019730.01.T01:intron | 30.0% | |
| TTTCATATATGGAGCTTACT+TGG | + | Chr4:25990599-25990618 | None:intergenic | 30.0% | |
| ! | TAAATCTTTAGCTTCCTCAA+TGG | + | Chr4:25988577-25988596 | None:intergenic | 30.0% |
| ! | TATTTGAAGCAAGAGTTTAG+TGG | - | Chr4:25989829-25989848 | MsG0480019730.01.T01:intron | 30.0% |
| ! | TCTTTTAAACCTTCCATCAT+TGG | + | Chr4:25989212-25989231 | None:intergenic | 30.0% |
| ! | TGATCTTCTTTTCTTGAGTT+TGG | + | Chr4:25988853-25988872 | None:intergenic | 30.0% |
| ! | TTTTCTCAAGTTTCACTTCT+GGG | + | Chr4:25989496-25989515 | None:intergenic | 30.0% |
| !!! | GTTTTTTTCCTGTTAACTCT+TGG | + | Chr4:25990217-25990236 | None:intergenic | 30.0% |
| AAAAATTGCATGTCCAAAGC+TGG | + | Chr4:25990798-25990817 | None:intergenic | 35.0% | |
| AACAGCTATCATTACATGGA+AGG | - | Chr4:25990280-25990299 | MsG0480019730.01.T01:intron | 35.0% | |
| AACGATGGAGACAGTTAAAA+AGG | - | Chr4:25990691-25990710 | MsG0480019730.01.T01:intron | 35.0% | |
| AAGCAGAGTTTAATGAAACC+TGG | - | Chr4:25988992-25989011 | MsG0480019730.01.T01:CDS | 35.0% | |
| AATGAAACCTGGGATGATTT+GGG | - | Chr4:25989003-25989022 | MsG0480019730.01.T01:CDS | 35.0% | |
| ACAGCTATCATTACATGGAA+GGG | - | Chr4:25990281-25990300 | MsG0480019730.01.T01:intron | 35.0% | |
| ACATAAACATTGGAGATGGA+GGG | - | Chr4:25990554-25990573 | MsG0480019730.01.T01:intron | 35.0% | |
| AGCAGAGTTTAATGAAACCT+GGG | - | Chr4:25988993-25989012 | MsG0480019730.01.T01:CDS | 35.0% | |
| AGGTTTCAAACCTTAGTTTC+TGG | - | Chr4:25988461-25988480 | MsG0480019730.01.T01:intron | 35.0% | |
| AGTCATCAAAACTCTCAAAG+TGG | - | Chr4:25988704-25988723 | MsG0480019730.01.T01:CDS | 35.0% | |
| ATCATAGCTCTTTCATCCAA+AGG | - | Chr4:25988679-25988698 | MsG0480019730.01.T01:CDS | 35.0% | |
| ATTTACAAGAACAATGGCAG+AGG | - | Chr4:25989461-25989480 | MsG0480019730.01.T01:intron | 35.0% | |
| CTAAGAGATATGTTTGTGTC+AGG | - | Chr4:25990456-25990475 | MsG0480019730.01.T01:CDS | 35.0% | |
| CTCAAGAAAAGAAGATCAGA+AGG | - | Chr4:25988855-25988874 | MsG0480019730.01.T01:CDS | 35.0% | |
| CTTCTCTCTGTTCAATTATG+AGG | - | Chr4:25988344-25988363 | MsG0480019730.01.T01:CDS | 35.0% | |
| GAAAACCTTCTTTGTACCAA+TGG | - | Chr4:25989555-25989574 | MsG0480019730.01.T01:intron | 35.0% | |
| GAGAAACTTTCTGTTCTTCT+TGG | + | Chr4:25988814-25988833 | None:intergenic | 35.0% | |
| GGTTTCAAACCTTAGTTTCT+GGG | - | Chr4:25988462-25988481 | MsG0480019730.01.T01:intron | 35.0% | |
| TAACATCCCTTCATGTTACA+AGG | - | Chr4:25990006-25990025 | MsG0480019730.01.T01:intron | 35.0% | |
| TAATCTGCTTCTTGAATTGC+TGG | + | Chr4:25988973-25988992 | None:intergenic | 35.0% | |
| TAATGAAACCTGGGATGATT+TGG | - | Chr4:25989002-25989021 | MsG0480019730.01.T01:CDS | 35.0% | |
| TACATAAACATTGGAGATGG+AGG | - | Chr4:25990553-25990572 | MsG0480019730.01.T01:intron | 35.0% | |
| TAGCAACAGCTATCATTACA+TGG | - | Chr4:25990276-25990295 | MsG0480019730.01.T01:intron | 35.0% | |
| TGAGAGTAATGTTTGAGTCA+TGG | - | Chr4:25990311-25990330 | MsG0480019730.01.T01:intron | 35.0% | |
| TGTAAAAGATCTATCAGCTC+CGG | - | Chr4:25990528-25990547 | MsG0480019730.01.T01:intron | 35.0% | |
| ! | AGCTTTGACTTAGAGTTCTT+TGG | + | Chr4:25989649-25989668 | None:intergenic | 35.0% |
| ! | ATCTTGTTGTGAATGCATCA+AGG | - | Chr4:25989525-25989544 | MsG0480019730.01.T01:intron | 35.0% |
| ! | GACTTTCTCTTTGAAGATCA+GGG | + | Chr4:25988920-25988939 | None:intergenic | 35.0% |
| ! | GCTGATTCTATGATTTCCAA+TGG | - | Chr4:25989797-25989816 | MsG0480019730.01.T01:intron | 35.0% |
| ! | GTTTTCTCAAGTTTCACTTC+TGG | + | Chr4:25989497-25989516 | None:intergenic | 35.0% |
| ! | TAGCTGTTGCTATTATACCA+AGG | + | Chr4:25990268-25990287 | None:intergenic | 35.0% |
| ! | TGACTTTCTCTTTGAAGATC+AGG | + | Chr4:25988921-25988940 | None:intergenic | 35.0% |
| ! | TGATCTAAAGCTTCTGAACA+AGG | - | Chr4:25989272-25989291 | MsG0480019730.01.T01:intron | 35.0% |
| ! | TGTTAGTTCTCTCAAAGTCA+TGG | - | Chr4:25988618-25988637 | MsG0480019730.01.T01:CDS | 35.0% |
| !! | AAAGTTGATGTTGTGTTTGC+TGG | - | Chr4:25990346-25990365 | MsG0480019730.01.T01:intron | 35.0% |
| !! | TAGAGTTCTTTGGCTTTGAA+GGG | + | Chr4:25989639-25989658 | None:intergenic | 35.0% |
| !! | TTAGAGTTCTTTGGCTTTGA+AGG | + | Chr4:25989640-25989659 | None:intergenic | 35.0% |
| AAAGATGCAAAGGTAGCTGT+TGG | - | Chr4:25989060-25989079 | MsG0480019730.01.T01:intron | 40.0% | |
| AAGAGCTACCAAGAGTTAAC+AGG | - | Chr4:25990206-25990225 | MsG0480019730.01.T01:intron | 40.0% | |
| AAGCTTCTGAACAAGGACTT+AGG | - | Chr4:25989279-25989298 | MsG0480019730.01.T01:intron | 40.0% | |
| AATCTGTAGCCCAGAAACTA+AGG | + | Chr4:25988474-25988493 | None:intergenic | 40.0% | |
| AGAGAGATCATTTGTCCATG+AGG | + | Chr4:25990056-25990075 | None:intergenic | 40.0% | |
| AGCAAGAGGTCAAAAAGCAA+AGG | - | Chr4:25988368-25988387 | MsG0480019730.01.T01:CDS | 40.0% | |
| AGCTGGCATAGAAATCAAGA+TGG | - | Chr4:25990847-25990866 | MsG0480019730.01.T01:CDS | 40.0% | |
| AGCTTCTGAACAAGGACTTA+GGG | - | Chr4:25989280-25989299 | MsG0480019730.01.T01:intron | 40.0% | |
| AGTTTCAAACTTCAGCCCAT+TGG | + | Chr4:25989574-25989593 | None:intergenic | 40.0% | |
| ATCTTTCGTAGGCATGTACA+TGG | + | Chr4:25990372-25990391 | None:intergenic | 40.0% | |
| CAGCTATCATTACATGGAAG+GGG | - | Chr4:25990282-25990301 | MsG0480019730.01.T01:intron | 40.0% | |
| CTCATACTGATGTACAAGCA+AGG | + | Chr4:25988398-25988417 | None:intergenic | 40.0% | |
| CTGTTAAGAGTGATTCCCTT+TGG | - | Chr4:25990875-25990894 | MsG0480019730.01.T01:CDS | 40.0% | |
| GAAGCTGATGAAAGATGCAA+AGG | - | Chr4:25989050-25989069 | MsG0480019730.01.T01:intron | 40.0% | |
| GACTCAACAAGTTCATCTCT+GGG | + | Chr4:25989157-25989176 | None:intergenic | 40.0% | |
| GCTCCGGTATACATAAACAT+TGG | - | Chr4:25990544-25990563 | MsG0480019730.01.T01:intron | 40.0% | |
| GGTACTTACAGATCTTTCGT+AGG | + | Chr4:25990383-25990402 | None:intergenic | 40.0% | |
| TCAAAGTGGTTGATCTGAAG+AGG | - | Chr4:25988718-25988737 | MsG0480019730.01.T01:CDS | 40.0% | |
| TCTTCAAGCCATGTGTATTG+TGG | + | Chr4:25990187-25990206 | None:intergenic | 40.0% | |
| TGACTCAACAAGTTCATCTC+TGG | + | Chr4:25989158-25989177 | None:intergenic | 40.0% | |
| TGAGGATGATGAAACTAGTG+AGG | - | Chr4:25988428-25988447 | MsG0480019730.01.T01:CDS | 40.0% | |
| TGCATGAGAACAATCAACCA+AGG | + | Chr4:25990241-25990260 | None:intergenic | 40.0% | |
| TGTTGTGAATGCATCAAGGA+AGG | - | Chr4:25989529-25989548 | MsG0480019730.01.T01:intron | 40.0% | |
| TTCAATTATGAGGGAGCAAG+AGG | - | Chr4:25988354-25988373 | MsG0480019730.01.T01:CDS | 40.0% | |
| TTCAGCACACATCATTGTCT+TGG | - | Chr4:25989703-25989722 | MsG0480019730.01.T01:intron | 40.0% | |
| TTCGAACCAGATCTACTGAA+TGG | - | Chr4:25988760-25988779 | MsG0480019730.01.T01:intron | 40.0% | |
| TTGGCCTCATATTCAGCATA+TGG | - | Chr4:25989722-25989741 | MsG0480019730.01.T01:intron | 40.0% | |
| TTGTTCTCATGCATTCACCT+TGG | - | Chr4:25990248-25990267 | MsG0480019730.01.T01:intron | 40.0% | |
| ! | CAAGTTCATCTCTGGGAATT+TGG | + | Chr4:25989150-25989169 | None:intergenic | 40.0% |
| ! | GAGTAAGAACCAATGATGGA+AGG | - | Chr4:25989200-25989219 | MsG0480019730.01.T01:intron | 40.0% |
| ! | GGAGCTGATAGATCTTTTAC+AGG | + | Chr4:25990529-25990548 | None:intergenic | 40.0% |
| !! | GAGTTTTGATGACTTGCCTT+TGG | + | Chr4:25988698-25988717 | None:intergenic | 40.0% |
| !!! | CTGAAGCTCTTTTGAAGTCT+TGG | + | Chr4:25989688-25989707 | None:intergenic | 40.0% |
| ACAGAAAGTTTCTCGCCAGA+AGG | - | Chr4:25988820-25988839 | MsG0480019730.01.T01:intron | 45.0% | |
| ACTAGTGAGGAGATGTACTC+AGG | - | Chr4:25988441-25988460 | MsG0480019730.01.T01:CDS | 45.0% | |
| AGAAAGTTTCTCGCCAGAAG+GGG | - | Chr4:25988822-25988841 | MsG0480019730.01.T01:intron | 45.0% | |
| AGATGGCCATTCAGTAGATC+TGG | + | Chr4:25988769-25988788 | None:intergenic | 45.0% | |
| AGCAAACATAGCTTTCGCAG+TGG | + | Chr4:25988326-25988345 | None:intergenic | 45.0% | |
| AGGACACATGCTTACATAGC+TGG | - | Chr4:25990830-25990849 | MsG0480019730.01.T01:CDS | 45.0% | |
| ATCACTACCCAAATCATCCC+AGG | + | Chr4:25989013-25989032 | None:intergenic | 45.0% | |
| ATTGTTGAGCTGACACCTCA+TGG | - | Chr4:25990038-25990057 | MsG0480019730.01.T01:intron | 45.0% | |
| CAAGAACAATGGCAGAGGAA+TGG | - | Chr4:25989466-25989485 | MsG0480019730.01.T01:intron | 45.0% | |
| CAGAAAGTTTCTCGCCAGAA+GGG | - | Chr4:25988821-25988840 | MsG0480019730.01.T01:intron | 45.0% | |
| GCATTTAGAGAAGCCAGCTT+TGG | - | Chr4:25990782-25990801 | MsG0480019730.01.T01:CDS | 45.0% | |
| GCTTCTGAACAAGGACTTAG+GGG | - | Chr4:25989281-25989300 | MsG0480019730.01.T01:intron | 45.0% | |
| GGAGATGGAGGGAATATTGA+AGG | - | Chr4:25990565-25990584 | MsG0480019730.01.T01:intron | 45.0% | |
| GGATGCTTCAACTGTAAGAC+CGG | - | Chr4:25988877-25988896 | MsG0480019730.01.T01:CDS | 45.0% | |
| TCAGCCCATTGGTACAAAGA+AGG | + | Chr4:25989563-25989582 | None:intergenic | 45.0% | |
| TCTCTAAATGCCGAGTACTC+TGG | + | Chr4:25990773-25990792 | None:intergenic | 45.0% | |
| TGCAAAGGTAGCTGTTGGAT+TGG | - | Chr4:25989065-25989084 | MsG0480019730.01.T01:intron | 45.0% | |
| TGGAGGGAATATTGAAGGCT+TGG | - | Chr4:25990570-25990589 | MsG0480019730.01.T01:intron | 45.0% | |
| ! | ACAACCACAACCAGAGTACT+CGG | - | Chr4:25990760-25990779 | MsG0480019730.01.T01:CDS | 45.0% |
| ! | ATCAGGGCATTCAGCAATGA+AGG | + | Chr4:25988904-25988923 | None:intergenic | 45.0% |
| ! | GGATGATTTGGGTAGTGATC+TGG | - | Chr4:25989014-25989033 | MsG0480019730.01.T01:CDS | 45.0% |
| ! | GTGATCTGGATCTGATAACG+AGG | - | Chr4:25989028-25989047 | MsG0480019730.01.T01:intron | 45.0% |
| ! | TAGCCTTAGAACTAGAGCTC+AGG | + | Chr4:25989612-25989631 | None:intergenic | 45.0% |
| !! | GAACCTGAGCTCTAGTTCTA+AGG | - | Chr4:25989606-25989625 | MsG0480019730.01.T01:intron | 45.0% |
| !!! | TTTTTTTTTCATAATTATTT+CGG | - | Chr4:25990423-25990442 | MsG0480019730.01.T01:CDS | 5.0% |
| AATGCCGAGTACTCTGGTTG+TGG | + | Chr4:25990767-25990786 | None:intergenic | 50.0% | |
| ACCAAAGGTGACTGCCATTG+AGG | - | Chr4:25988560-25988579 | MsG0480019730.01.T01:intron | 50.0% | |
| AGTCACCTTTGGTCTCCATC+TGG | + | Chr4:25988553-25988572 | None:intergenic | 50.0% | |
| GGCATTCAGCAATGAAGGTC+CGG | + | Chr4:25988899-25988918 | None:intergenic | 50.0% | |
| GTAGCAACAGCACTCAAAGC+TGG | - | Chr4:25989087-25989106 | MsG0480019730.01.T01:intron | 50.0% | |
| TCAGAAGCTTACCTGCCAGA+TGG | - | Chr4:25988535-25988554 | MsG0480019730.01.T01:intron | 50.0% | |
| TCCTCAATGGCAGTCACCTT+TGG | + | Chr4:25988564-25988583 | None:intergenic | 50.0% | |
| ! | GAGTTTGGAGTTACCCCTTC+TGG | + | Chr4:25988838-25988857 | None:intergenic | 50.0% |
| ACCTGCCAGATGGAGACCAA+AGG | - | Chr4:25988545-25988564 | MsG0480019730.01.T01:intron | 55.0% | |
| ACCTTTGGTCTCCATCTGGC+AGG | + | Chr4:25988549-25988568 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 25988310 | 25990907 | 25988310 | ID=MsG0480019730.01;Name=MsG0480019730.01 |
| Chr4 | mRNA | 25988310 | 25990907 | 25988310 | ID=MsG0480019730.01.T01;Parent=MsG0480019730.01;Name=MsG0480019730.01.T01;_AED=0.56;_eAED=0.58;_QI=0|0|0|0.8|1|1|5|0|293 |
| Chr4 | exon | 25990696 | 25990907 | 25990696 | ID=MsG0480019730.01.T01:exon:15986;Parent=MsG0480019730.01.T01 |
| Chr4 | exon | 25990374 | 25990546 | 25990374 | ID=MsG0480019730.01.T01:exon:15985;Parent=MsG0480019730.01.T01 |
| Chr4 | exon | 25988824 | 25989044 | 25988824 | ID=MsG0480019730.01.T01:exon:15984;Parent=MsG0480019730.01.T01 |
| Chr4 | exon | 25988618 | 25988739 | 25988618 | ID=MsG0480019730.01.T01:exon:15983;Parent=MsG0480019730.01.T01 |
| Chr4 | exon | 25988310 | 25988463 | 25988310 | ID=MsG0480019730.01.T01:exon:15982;Parent=MsG0480019730.01.T01 |
| Chr4 | CDS | 25990696 | 25990907 | 25990696 | ID=MsG0480019730.01.T01:cds;Parent=MsG0480019730.01.T01 |
| Chr4 | CDS | 25990374 | 25990546 | 25990374 | ID=MsG0480019730.01.T01:cds;Parent=MsG0480019730.01.T01 |
| Chr4 | CDS | 25988824 | 25989044 | 25988824 | ID=MsG0480019730.01.T01:cds;Parent=MsG0480019730.01.T01 |
| Chr4 | CDS | 25988618 | 25988739 | 25988618 | ID=MsG0480019730.01.T01:cds;Parent=MsG0480019730.01.T01 |
| Chr4 | CDS | 25988310 | 25988463 | 25988310 | ID=MsG0480019730.01.T01:cds;Parent=MsG0480019730.01.T01 |
| Gene Sequence |
| Protein sequence |
