AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029938.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029938.01.T01 MTR_5g095230 90.891 516 11 1 30 509 1 516 0.0 953
MsG0580029938.01.T01 MTR_2g072250 74.031 516 98 1 30 509 1 516 0.0 784
MsG0580029938.01.T01 MTR_2g072260 70.736 516 112 2 30 509 1 513 0.0 703
MsG0580029938.01.T01 MTR_2g055470 63.776 519 150 2 29 509 2 520 0.0 699
MsG0580029938.01.T01 MTR_2g055430 65.039 512 143 1 34 509 9 520 0.0 696
MsG0580029938.01.T01 MTR_2g072400 65.166 511 141 2 36 509 8 518 0.0 686
MsG0580029938.01.T01 MTR_2g072340 64.706 510 143 2 36 508 8 517 0.0 682
MsG0580029938.01.T01 MTR_5g095230 96.501 343 12 0 30 372 1 343 0.0 681
MsG0580029938.01.T01 MTR_2g023680 61.014 513 164 1 33 509 8 520 0.0 644
MsG0580029938.01.T01 MTR_2g072380 62.970 505 125 3 41 508 13 492 0.0 614
MsG0580029938.01.T01 MTR_2g072270 53.425 511 194 6 39 507 15 523 0.0 550
MsG0580029938.01.T01 MTR_8g042000 52.132 516 199 6 36 507 13 524 0.0 520
MsG0580029938.01.T01 MTR_8g042060 50.389 514 211 5 36 507 13 524 3.70e-179 514
MsG0580029938.01.T01 MTR_4g031820 48.438 512 223 7 35 507 19 528 2.39e-178 512
MsG0580029938.01.T01 MTR_8g042040 51.509 497 214 5 36 507 13 507 7.52e-177 507
MsG0580029938.01.T01 MTR_8g042020 49.903 513 214 5 36 507 13 523 3.13e-176 506
MsG0580029938.01.T01 MTR_2g072330 53.992 476 152 5 34 508 6 415 4.55e-173 494
MsG0580029938.01.T01 MTR_4g031820 47.648 489 239 5 35 507 19 506 8.47e-172 494
MsG0580029938.01.T01 MTR_2g072380 66.477 352 82 1 193 508 1 352 2.27e-170 484
MsG0580029938.01.T01 MTR_2g072310 65.909 352 84 1 193 508 1 352 2.12e-169 482
MsG0580029938.01.T01 MTR_2g055430 66.964 336 111 0 34 369 9 344 1.52e-166 476
MsG0580029938.01.T01 MTR_2g023680 64.412 340 121 0 33 372 8 347 2.27e-158 455
MsG0580029938.01.T01 MTR_8g042060 46.304 514 196 6 36 507 13 488 2.37e-152 444
MsG0580029938.01.T01 MTR_2g072330 51.220 369 113 5 141 508 2 304 1.89e-119 353
MsG0580029938.01.T01 MTR_8g042000 51.014 345 157 5 36 372 13 353 1.30e-117 352
MsG0580029938.01.T01 MTR_4g113650 37.876 499 256 6 55 507 29 519 7.28e-112 342
MsG0580029938.01.T01 MTR_4g031820 47.256 328 168 5 35 359 19 344 6.13e-110 332
MsG0580029938.01.T01 MTR_7g098550 35.070 499 269 7 50 507 21 505 2.61e-103 319
MsG0580029938.01.T01 MTR_1g085680 33.865 502 285 6 49 508 21 517 4.02e-99 308
MsG0580029938.01.T01 MTR_7g098550 34.469 499 264 9 50 507 21 497 2.83e-97 303
MsG0580029938.01.T01 MTR_6g017325 32.177 519 292 10 35 508 5 508 2.11e-87 278
MsG0580029938.01.T01 MTR_1g022040 31.161 491 285 5 57 507 26 503 7.91e-86 273
MsG0580029938.01.T01 MTR_7g006900 32.649 487 266 10 69 509 4 474 5.93e-82 263
MsG0580029938.01.T01 MTR_1g101040 28.629 496 300 9 56 507 30 515 2.70e-77 252
MsG0580029938.01.T01 MTR_2g055530 55.455 220 60 1 66 285 6 187 4.68e-77 241
MsG0580029938.01.T01 MTR_2g072420 75.352 142 35 0 367 508 1 142 8.44e-75 233
MsG0580029938.01.T01 MTR_1g101050 29.637 496 291 11 56 507 30 511 3.18e-74 243
MsG0580029938.01.T01 MTR_6g072490 29.459 499 289 13 56 507 31 513 1.86e-72 239
MsG0580029938.01.T01 MTR_8g008530 27.916 523 317 8 35 507 7 519 2.49e-68 228
MsG0580029938.01.T01 MTR_3g093530 27.505 509 316 8 45 506 21 523 3.99e-68 228
MsG0580029938.01.T01 MTR_0025s0110 27.955 533 302 12 33 507 18 526 5.31e-68 228
MsG0580029938.01.T01 MTR_7g055793 29.225 503 295 8 52 500 22 517 5.37e-67 225
MsG0580029938.01.T01 MTR_0147s0030 28.155 515 310 9 39 500 17 524 2.18e-66 223
MsG0580029938.01.T01 MTR_7g055793 29.670 455 272 7 87 500 15 462 1.09e-63 214
MsG0580029938.01.T01 MTR_1g069200 25.573 524 317 10 35 507 11 512 5.95e-60 206
MsG0580029938.01.T01 MTR_2g061200 28.039 510 313 11 51 508 23 530 4.03e-58 201
MsG0580029938.01.T01 MTR_8g469360 30.628 382 219 6 161 505 48 420 2.94e-54 188
MsG0580029938.01.T01 MTR_7g098550 33.546 313 194 5 50 358 21 323 2.52e-53 184
MsG0580029938.01.T01 MTR_7g006900 30.588 340 216 7 39 369 11 339 3.65e-44 160
MsG0580029938.01.T01 MTR_2g072410 62.963 81 30 0 39 119 11 91 1.18e-30 115
MsG0580029938.01.T01 MTR_5g009110 24.115 452 241 15 119 480 103 542 3.86e-25 109
MsG0580029938.01.T01 MTR_3g062900 43.269 104 59 0 392 495 1 104 4.69e-25 100
MsG0580029938.01.T01 MTR_1g062190 24.242 429 238 15 119 482 108 514 1.03e-24 107
MsG0580029938.01.T01 MTR_5g009110 24.627 402 206 13 165 480 4 394 5.73e-24 104
MsG0580029938.01.T01 MTR_7g079440 23.059 438 247 15 119 492 218 629 3.21e-21 97.8
MsG0580029938.01.T01 MTR_0727s0010 43.373 83 47 0 426 508 13 95 4.08e-21 88.6
MsG0580029938.01.T01 MTR_5g019010 20.144 417 265 11 119 480 68 471 4.24e-14 75.1
MsG0580029938.01.T01 MTR_5g021390 22.333 300 182 8 228 480 186 481 1.29e-12 70.5
MsG0580029938.01.T01 MTR_5g018980 20.776 361 223 11 171 480 126 474 4.00e-12 68.9
MsG0580029938.01.T01 MTR_1g035750 21.692 461 288 18 111 506 52 504 1.34e-11 67.0
MsG0580029938.01.T01 MTR_1g035140 20.729 439 279 13 116 502 66 487 1.44e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029938.01.T01 AT3G14690 49.807 518 214 6 30 507 1 512 0.0 534
MsG0580029938.01.T01 AT3G14690 49.711 519 215 6 29 507 35 547 0.0 534
MsG0580029938.01.T01 AT3G14610 52.200 500 194 5 47 507 19 512 0.0 529
MsG0580029938.01.T01 AT3G14660 51.210 496 198 5 50 507 23 512 2.27e-180 516
MsG0580029938.01.T01 AT3G14640 51.205 498 197 6 50 507 23 514 3.19e-180 516
MsG0580029938.01.T01 AT3G14640 51.205 498 197 6 50 507 45 536 1.43e-179 515
MsG0580029938.01.T01 AT3G14650 50.806 496 200 5 50 507 23 512 1.96e-179 514
MsG0580029938.01.T01 AT3G14620 51.896 501 192 5 47 507 24 515 3.66e-179 513
MsG0580029938.01.T01 AT3G14680 50.806 496 200 5 50 507 23 512 7.01e-179 513
MsG0580029938.01.T01 AT3G14630 47.417 542 239 7 5 507 29 563 7.07e-173 499
MsG0580029938.01.T01 AT3G14630 49.511 511 210 7 39 507 4 508 8.93e-173 497
MsG0580029938.01.T01 AT2G26710 37.381 527 269 7 29 507 2 515 9.14e-125 375
MsG0580029938.01.T01 AT3G14660 50.568 352 131 4 193 507 21 366 6.94e-121 359
MsG0580029938.01.T01 AT3G14660 50.000 322 153 4 50 369 23 338 1.35e-109 331
MsG0580029938.01.T01 AT1G75130 34.004 497 272 7 55 509 23 505 1.87e-97 304
MsG0580029938.01.T01 AT2G46960 34.706 510 270 11 48 508 23 518 1.86e-96 301
MsG0580029938.01.T01 AT4G27710 33.461 523 297 6 30 507 1 517 3.44e-96 301
MsG0580029938.01.T01 AT2G46950 34.195 503 278 8 48 508 80 571 4.21e-95 300
MsG0580029938.01.T01 AT5G38450 30.874 515 308 7 35 507 8 516 1.29e-79 258
MsG0580029938.01.T01 AT2G46960 35.122 410 208 8 146 508 4 402 3.06e-76 246
MsG0580029938.01.T01 AT1G67110 29.709 515 307 7 36 508 10 511 5.40e-76 248
MsG0580029938.01.T01 AT5G52400 28.679 530 304 14 32 507 10 519 1.18e-73 242
MsG0580029938.01.T01 AT5G24910 30.074 542 299 12 29 506 7 532 1.51e-72 240
MsG0580029938.01.T01 AT1G17060 40.502 279 156 3 41 313 16 290 9.48e-72 231
MsG0580029938.01.T01 AT5G24900 29.006 493 292 8 61 502 37 522 4.00e-70 233
MsG0580029938.01.T01 AT5G24900 31.510 384 217 5 161 502 26 405 1.12e-60 205
MsG0580029938.01.T01 AT2G46950 33.837 331 203 7 48 373 80 399 4.73e-54 188
MsG0580029938.01.T01 AT4G27710 32.370 346 217 6 35 373 11 346 1.30e-53 185
MsG0580029938.01.T01 AT5G38450 28.746 327 225 4 35 356 8 331 3.07e-37 142
MsG0580029938.01.T01 AT1G67110 28.528 326 218 5 36 356 10 325 1.01e-34 134
MsG0580029938.01.T01 AT5G24910 26.216 370 230 10 29 371 7 360 1.95e-30 123
MsG0580029938.01.T01 AT3G53130 23.944 426 243 13 119 482 108 514 2.01e-25 110
MsG0580029938.01.T01 AT1G31800 23.488 430 240 14 119 483 139 544 1.62e-23 104
MsG0580029938.01.T01 AT3G26125 23.312 459 269 15 125 508 85 535 7.23e-20 93.2
MsG0580029938.01.T01 AT1G13140 21.798 445 275 13 125 504 85 521 1.87e-18 89.0
MsG0580029938.01.T01 AT1G13150 23.944 426 248 16 150 508 104 520 1.98e-17 85.5
MsG0580029938.01.T01 AT1G13140 21.233 438 260 12 125 504 85 495 8.53e-16 80.5
MsG0580029938.01.T01 AT1G11610 23.765 425 243 15 119 483 64 467 9.98e-16 80.1
MsG0580029938.01.T01 AT1G11610 23.628 419 251 14 119 483 64 467 1.10e-15 80.1
MsG0580029938.01.T01 AT1G57750 23.864 440 259 15 126 506 73 495 1.92e-15 79.3
MsG0580029938.01.T01 AT2G44890 20.631 412 259 11 130 481 78 481 6.54e-14 74.7
MsG0580029938.01.T01 AT2G30750 25.714 280 150 9 229 462 179 446 1.09e-13 73.9
MsG0580029938.01.T01 AT5G24960 22.667 300 175 10 232 485 182 470 7.21e-12 68.2

Find 109 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCCTTCCCTTCAGAATT+TGG 0.171134 5:-104227989 MsG0580029938.01.T01:CDS
TCCATTTCTCTGTTTGTAAT+TGG 0.176071 5:+104230052 None:intergenic
AATAGGAGGATTAATGAAAT+TGG 0.205642 5:-104227686 MsG0580029938.01.T01:CDS
GCAATGATTTAATTAGAAAA+TGG 0.211121 5:-104228053 MsG0580029938.01.T01:CDS
AACAGCTTCTCTAGCTTCTT+TGG 0.214282 5:+104229947 None:intergenic
ATTCCTCCAGAAAATCTTTC+AGG 0.221298 5:+104226398 None:intergenic
TGCACCATGATTGTGAATTA+TGG 0.225322 5:-104226445 MsG0580029938.01.T01:CDS
CTACTTCAACTTTACTTGTT+TGG 0.238479 5:-104227454 MsG0580029938.01.T01:CDS
GTTTCGCGAAAGCTCAATTA+TGG 0.257252 5:+104226541 None:intergenic
TCATATTATTCTGCGTAAAT+TGG 0.261176 5:-104226180 MsG0580029938.01.T01:CDS
TCATGGTGCAACAATATAAT+TGG 0.263625 5:+104226458 None:intergenic
AAAATCTTATGATTATTCTT+TGG 0.268531 5:+104228401 None:intergenic
TGCAAGTTGTTCTACTTTGC+AGG 0.275508 5:-104227485 MsG0580029938.01.T01:CDS
TTGTGACGCTTGGTTTGATA+TGG 0.276438 5:-104230003 MsG0580029938.01.T01:CDS
GAAAATAAGAATGACTTATT+AGG 0.284202 5:-104227596 MsG0580029938.01.T01:CDS
AACTCTACCGTTCGTTGCTT+TGG 0.302769 5:+104226373 None:intergenic
TCTCCATACAAAATCCTATA+TGG 0.323570 5:+104229899 None:intergenic
GTTATTTCTCGAACAACATT+TGG 0.349051 5:-104227958 MsG0580029938.01.T01:CDS
CAACACAATGTTAAAATTCA+TGG 0.355477 5:-104229785 MsG0580029938.01.T01:intron
CAATGATTTAATTAGAAAAT+GGG 0.357344 5:-104228052 MsG0580029938.01.T01:CDS
TTGCAGGTTTGTACCTACTA+TGG 0.359334 5:-104227711 MsG0580029938.01.T01:intron
GAATATTGAAGATGTAATTC+AGG 0.371272 5:-104227510 MsG0580029938.01.T01:CDS
ACCAATTACAAACAGAGAAA+TGG 0.372065 5:-104230053 MsG0580029938.01.T01:CDS
TTCTCTATTGGAAGCAAAGA+TGG 0.382599 5:-104226300 MsG0580029938.01.T01:CDS
TTTAACATTGTGTTGGATGT+AGG 0.388508 5:+104229793 None:intergenic
TATATCATCGGTGAGATTCA+TGG 0.389863 5:+104229832 None:intergenic
AAAAGTGGAGCAAGCATAGA+AGG 0.399835 5:-104228340 MsG0580029938.01.T01:CDS
ATTTCTCTGTTTGTAATTGG+TGG 0.401543 5:+104230055 None:intergenic
GCACCATGATTGTGAATTAT+GGG 0.407055 5:-104226444 MsG0580029938.01.T01:CDS
ATAGGAGGATTAATGAAATT+GGG 0.411585 5:-104227685 MsG0580029938.01.T01:CDS
CCACTCCAGCAGATAATGTT+AGG 0.418409 5:+104226492 None:intergenic
TTTCTCTGTTTGTAATTGGT+GGG 0.420505 5:+104230056 None:intergenic
CAAACCAAGCGTCACAATGA+TGG 0.423439 5:+104230009 None:intergenic
TTAAGAGAACAAGGTCTTCA+AGG 0.436422 5:-104229926 MsG0580029938.01.T01:CDS
TTTCGCGAAAGCTCAATTAT+GGG 0.436932 5:+104226542 None:intergenic
TTCCATTTGGATGGGGTCCT+AGG 0.438258 5:-104226343 MsG0580029938.01.T01:CDS
TGCTGAATTGGTTGTGGTTG+AGG 0.441437 5:-104229970 MsG0580029938.01.T01:CDS
GGGCATGGAGGATGCTGAAT+TGG 0.445072 5:-104229982 MsG0580029938.01.T01:CDS
AATACATCTATGATTTGCTC+AGG 0.446365 5:+104228443 None:intergenic
TTTGGAAGTAGTTATGAAGA+AGG 0.447029 5:-104227940 MsG0580029938.01.T01:CDS
TTAAGGATATGATCAACAAA+AGG 0.447635 5:-104227643 MsG0580029938.01.T01:CDS
TTAACATTGTGTTGGATGTA+GGG 0.447689 5:+104229794 None:intergenic
TTGTACCTACTATGGTCAAT+AGG 0.448076 5:-104227703 MsG0580029938.01.T01:CDS
CATAAAGGATCTTCTTAAGA+TGG 0.451748 5:-104229876 MsG0580029938.01.T01:CDS
TGTAATTGGTGGGGCAAAGA+AGG 0.460936 5:+104230066 None:intergenic
AGATATAAAATCTTCACTTA+AGG 0.461164 5:-104227660 MsG0580029938.01.T01:CDS
TCTATTTCACATGATCCATC+TGG 0.465020 5:+104228015 None:intergenic
TTCTCTGTTTGTAATTGGTG+GGG 0.469380 5:+104230057 None:intergenic
ATTCCCATCATTGTGACGCT+TGG 0.486344 5:-104230013 MsG0580029938.01.T01:CDS
GTCTTCAAGGGAATCCATAT+AGG 0.486578 5:-104229913 MsG0580029938.01.T01:CDS
TAGTGGTCTTGCTAGTCTTG+AGG 0.493762 5:-104228366 MsG0580029938.01.T01:CDS
TTAAGAGCAATTACTGTGGC+TGG 0.493931 5:+104226218 None:intergenic
CAAAAGGGTGAAAATATTGA+AGG 0.498444 5:-104227627 MsG0580029938.01.T01:CDS
CAAAGCAAAGGAAGTGAAAG+TGG 0.499097 5:+104230105 None:intergenic
GATCATGTGAAATAGACATA+TGG 0.501447 5:-104228008 MsG0580029938.01.T01:CDS
ATCCTAGGACCCCATCCAAA+TGG 0.501917 5:+104226341 None:intergenic
AGTGGTCTTGCTAGTCTTGA+GGG 0.507608 5:-104228365 MsG0580029938.01.T01:CDS
GGAGGATGCTGAATTGGTTG+TGG 0.511983 5:-104229976 MsG0580029938.01.T01:CDS
CATAACCTCATACAAAATCA+TGG 0.515351 5:+104226577 None:intergenic
AACTTTACTTGTTTGGACAA+TGG 0.516866 5:-104227447 MsG0580029938.01.T01:intron
GGATCTTCTTAAGATGGAAA+AGG 0.517108 5:-104229870 MsG0580029938.01.T01:CDS
TGTGACGCTTGGTTTGATAT+GGG 0.517779 5:-104230002 MsG0580029938.01.T01:CDS
AAACCAAGCGTCACAATGAT+GGG 0.521180 5:+104230010 None:intergenic
GGTTCTGTGAGAATCACCCT+TGG 0.525245 5:+104228464 None:intergenic
CCTAACATTATCTGCTGGAG+TGG 0.533125 5:-104226492 MsG0580029938.01.T01:CDS
TAAGGATATGATCAACAAAA+GGG 0.535704 5:-104227642 MsG0580029938.01.T01:CDS
CGCTTGGTTTGATATGGGCA+TGG 0.537175 5:-104229997 MsG0580029938.01.T01:CDS
GCAAGTTGTTCTACTTTGCA+GGG 0.538368 5:-104227484 MsG0580029938.01.T01:CDS
CACCCCATAATTCACAATCA+TGG 0.542452 5:+104226441 None:intergenic
AACATTATCTGCTGGAGTGG+AGG 0.542694 5:-104226489 MsG0580029938.01.T01:CDS
TTAAGATGGAAAAGGAAGCC+AGG 0.543333 5:-104229862 MsG0580029938.01.T01:CDS
AATTGGTGGGGCAAAGAAGG+TGG 0.550055 5:+104230069 None:intergenic
AGTCTTAATTACCTCCATAG+AGG 0.552576 5:+104227847 None:intergenic
GTGAAAATATTGAAGGAAGG+TGG 0.556564 5:-104227620 MsG0580029938.01.T01:CDS
ACACGGAAACAACGTGAATG+TGG 0.557304 5:-104227537 MsG0580029938.01.T01:CDS
CATCACTAGCCAAATTCTGA+AGG 0.557704 5:+104227980 None:intergenic
ATTGCTCTTAAGCCACAATA+CGG 0.558864 5:-104226206 MsG0580029938.01.T01:CDS
ATCCTCCTATTGACCATAGT+AGG 0.562488 5:+104227698 None:intergenic
TGGGGTCCTAGGATCTGCAT+TGG 0.563202 5:-104226332 MsG0580029938.01.T01:CDS
GAGAAGCTGTTAAGAGAACA+AGG 0.565605 5:-104229935 MsG0580029938.01.T01:CDS
CTAGTCTTGAGGGAGAAAAG+TGG 0.566914 5:-104228355 MsG0580029938.01.T01:CDS
GGAGACCTAACATTATCTGC+TGG 0.567226 5:-104226497 MsG0580029938.01.T01:CDS
GCTGGAGCATGAGCATAGGC+TGG 0.568382 5:+104226236 None:intergenic
GAGATTCATGGATTTAGACC+TGG 0.569485 5:+104229844 None:intergenic
CTAGCCAAATTCTGAAGGGA+AGG 0.581397 5:+104227985 None:intergenic
ATAATATGAGCACCGTATTG+TGG 0.582346 5:+104226194 None:intergenic
TACCTACTATGGTCAATAGG+AGG 0.583831 5:-104227700 MsG0580029938.01.T01:CDS
ATCACTAGCCAAATTCTGAA+GGG 0.584793 5:+104227981 None:intergenic
TAAGAGAACAAGGTCTTCAA+GGG 0.585971 5:-104229925 MsG0580029938.01.T01:CDS
GAGGAAATGTTGTCTCCAGA+TGG 0.591198 5:-104228030 MsG0580029938.01.T01:CDS
TTGGTTTGGAACAAAACCAA+GGG 0.591413 5:-104228480 MsG0580029938.01.T01:CDS
CACGGAAACAACGTGAATGT+GGG 0.596449 5:-104227536 MsG0580029938.01.T01:CDS
TACACGTGGCGTTATATCAT+CGG 0.596840 5:+104229820 None:intergenic
AGGGTGAAAATATTGAAGGA+AGG 0.598142 5:-104227623 MsG0580029938.01.T01:CDS
TTACAAACAGAGAAATGGAA+TGG 0.598701 5:-104230048 MsG0580029938.01.T01:CDS
CGCGAAAGCTCAATTATGGG+AGG 0.599936 5:+104226545 None:intergenic
CACAAGGAAATTAAAGAACA+CGG 0.600350 5:-104227554 MsG0580029938.01.T01:CDS
TGTGGCTGGAGCATGAGCAT+AGG 0.608845 5:+104226232 None:intergenic
CGTGTTCTTTAATTTCCTTG+TGG 0.610561 5:+104227555 None:intergenic
TTTGGTTTGGAACAAAACCA+AGG 0.613316 5:-104228481 MsG0580029938.01.T01:CDS
TGATTTAATTAGAAAATGGG+AGG 0.627740 5:-104228049 MsG0580029938.01.T01:CDS
TAATGTAAATGACAAAGCAA+AGG 0.628622 5:+104230093 None:intergenic
AAAGCAAAGGAAGTGAAAGT+GGG 0.649917 5:+104230106 None:intergenic
GGAATTTCCAAAGCAACGAA+CGG 0.652740 5:-104226380 MsG0580029938.01.T01:CDS
CACCATGATTGTGAATTATG+GGG 0.656392 5:-104226443 MsG0580029938.01.T01:CDS
TCTTCTAGAGACAAACCACA+AGG 0.719349 5:-104227570 MsG0580029938.01.T01:CDS
TTGGTTTGATATGGGCATGG+AGG 0.730690 5:-104229994 MsG0580029938.01.T01:CDS
TGGATGTAGGGAATTACACG+TGG 0.736158 5:+104229806 None:intergenic
TGGCTTAAGAGCAATTACTG+TGG 0.764853 5:+104226214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTAATATTTT+CGG + Chr5:104227313-104227332 None:intergenic 0.0%
!! AAAGATAAAACAAATAAAAT+TGG + Chr5:104227468-104227487 None:intergenic 10.0%
!! AACATATAAAATATTCAAAA+TGG - Chr5:104229350-104229369 MsG0580029938.01.T01:intron 10.0%
!! AATGTTTAATTATGTTATTA+AGG - Chr5:104227428-104227447 MsG0580029938.01.T01:intron 10.0%
!! ACATATAAAATATTCAAAAT+GGG - Chr5:104229351-104229370 MsG0580029938.01.T01:intron 10.0%
!! ATGTTTAATTATGTTATTAA+GGG - Chr5:104227429-104227448 MsG0580029938.01.T01:intron 10.0%
!!! AAAATATATTTTACGATTTA+AGG + Chr5:104227622-104227641 None:intergenic 10.0%
!!! AATATATTTTAATTTGATGA+TGG - Chr5:104227632-104227651 MsG0580029938.01.T01:CDS 10.0%
!!! AATTTCTAAATATTTTGTAA+AGG + Chr5:104228027-104228046 None:intergenic 10.0%
!!! ATTTAAGATAATTTATGATT+TGG - Chr5:104227003-104227022 MsG0580029938.01.T01:intron 10.0%
!!! ATTTCTAAATATTTTGTAAA+GGG + Chr5:104228026-104228045 None:intergenic 10.0%
!!! TATAATTTTTTTGTCATTAT+AGG - Chr5:104229690-104229709 MsG0580029938.01.T01:intron 10.0%
!! AAAATCTTATGATTATTCTT+TGG + Chr5:104227895-104227914 None:intergenic 15.0%
!! AGTAGTAATATATATTGTTT+AGG + Chr5:104227337-104227356 None:intergenic 15.0%
!! ATAAGTCAAAATAATGTATA+TGG - Chr5:104226672-104226691 MsG0580029938.01.T01:intron 15.0%
!! CAATGATTTAATTAGAAAAT+GGG - Chr5:104228241-104228260 MsG0580029938.01.T01:intron 15.0%
!! GTTTATTTAAATGATTTAGT+TGG + Chr5:104226951-104226970 None:intergenic 15.0%
!!! AAGAATTTTTTTATTTGGTT+TGG - Chr5:104227799-104227818 MsG0580029938.01.T01:intron 15.0%
!!! TAATAATGCTTTGAATTTTT+TGG + Chr5:104229587-104229606 None:intergenic 15.0%
!!! TGTTTTATCTTTAATTTTCA+GGG - Chr5:104227476-104227495 MsG0580029938.01.T01:CDS 15.0%
!!! TTAAAAATCAATCACAATTT+TGG - Chr5:104229434-104229453 MsG0580029938.01.T01:intron 15.0%
!!! TTGAATATTTTATATGTTAG+CGG + Chr5:104229348-104229367 None:intergenic 15.0%
!!! TTGTTTTATCTTTAATTTTC+AGG - Chr5:104227475-104227494 MsG0580029938.01.T01:CDS 15.0%
!! AAAAATATTAGATTCCAATC+AGG + Chr5:104229505-104229524 None:intergenic 20.0%
!! AAAATAATGTATATGGAGTT+TGG - Chr5:104226679-104226698 MsG0580029938.01.T01:intron 20.0%
!! AAAATATTAGATTCCAATCA+GGG + Chr5:104229504-104229523 None:intergenic 20.0%
!! AAATTCACTCAAAAAAAGTT+AGG + Chr5:104227278-104227297 None:intergenic 20.0%
!! AATTCACTCAAAAAAAGTTA+GGG + Chr5:104227277-104227296 None:intergenic 20.0%
!! AGATATAAAATCTTCACTTA+AGG - Chr5:104228633-104228652 MsG0580029938.01.T01:intron 20.0%
!! CTTAAATAATGACCTAAAAA+GGG - Chr5:104227144-104227163 MsG0580029938.01.T01:intron 20.0%
!! GAAAATAAGAATGACTTATT+AGG - Chr5:104228697-104228716 MsG0580029938.01.T01:intron 20.0%
!! GCAATGATTTAATTAGAAAA+TGG - Chr5:104228240-104228259 MsG0580029938.01.T01:intron 20.0%
!! TAAATAAACTCTTCTACAAA+TGG - Chr5:104226962-104226981 MsG0580029938.01.T01:intron 20.0%
!! TAAATTCAACTTTGTATACA+GGG + Chr5:104226988-104227007 None:intergenic 20.0%
!! TATACTACAAGTAAGTATTA+TGG + Chr5:104229674-104229693 None:intergenic 20.0%
!! TTAAATTCAACTTTGTATAC+AGG + Chr5:104226989-104227008 None:intergenic 20.0%
!!! AAAATTCAAAGCATTATTAC+TGG - Chr5:104229588-104229607 MsG0580029938.01.T01:intron 20.0%
!!! AACAAAAAACCAAATTTTGA+TGG - Chr5:104228934-104228953 MsG0580029938.01.T01:intron 20.0%
!!! ACAAAAAACCAAATTTTGAT+GGG - Chr5:104228935-104228954 MsG0580029938.01.T01:intron 20.0%
!!! AGAAAATTTTAAGTCAAAAG+AGG + Chr5:104227214-104227233 None:intergenic 20.0%
!!! ATATTTTAGTATTTGGCATT+AGG - Chr5:104229546-104229565 MsG0580029938.01.T01:intron 20.0%
!!! ATTTCTGTCTAAGATAATTT+GGG - Chr5:104226875-104226894 MsG0580029938.01.T01:intron 20.0%
!!! TAGGGAAGAATTTTTTTATT+TGG - Chr5:104227794-104227813 MsG0580029938.01.T01:intron 20.0%
!!! TATTTCTGTCTAAGATAATT+TGG - Chr5:104226874-104226893 MsG0580029938.01.T01:intron 20.0%
!!! TCTTTCTAGTATTTTACTTA+AGG - Chr5:104229027-104229046 MsG0580029938.01.T01:intron 20.0%
!!! TGACTTAAAATTTTCTCTTT+TGG - Chr5:104227218-104227237 MsG0580029938.01.T01:intron 20.0%
! AATAGGAGGATTAATGAAAT+TGG - Chr5:104228607-104228626 MsG0580029938.01.T01:intron 25.0%
! AGAATTAGTGACCTAAATTT+CGG - Chr5:104229394-104229413 MsG0580029938.01.T01:intron 25.0%
! ATAGGAGGATTAATGAAATT+GGG - Chr5:104228608-104228627 MsG0580029938.01.T01:intron 25.0%
! ATAGTTGCAAATGTTATGTA+GGG - Chr5:104227776-104227795 MsG0580029938.01.T01:intron 25.0%
! CAACACAATGTTAAAATTCA+TGG - Chr5:104226508-104226527 MsG0580029938.01.T01:CDS 25.0%
! GAATATTGAAGATGTAATTC+AGG - Chr5:104228783-104228802 MsG0580029938.01.T01:intron 25.0%
! GCCAAATACTAAAATATTAG+AGG + Chr5:104229543-104229562 None:intergenic 25.0%
! GCTTAAATAATGACCTAAAA+AGG - Chr5:104227143-104227162 MsG0580029938.01.T01:intron 25.0%
! TAAATCATTTAGATAAGCTC+TGG - Chr5:104227056-104227075 MsG0580029938.01.T01:intron 25.0%
! TAAGGATATGATCAACAAAA+GGG - Chr5:104228651-104228670 MsG0580029938.01.T01:intron 25.0%
! TAATGTAAATGACAAAGCAA+AGG + Chr5:104226203-104226222 None:intergenic 25.0%
! TATAGTTGCAAATGTTATGT+AGG - Chr5:104227775-104227794 MsG0580029938.01.T01:intron 25.0%
! TCATATTATTCTGCGTAAAT+TGG - Chr5:104230113-104230132 MsG0580029938.01.T01:CDS 25.0%
! TGATTTAATTAGAAAATGGG+AGG - Chr5:104228244-104228263 MsG0580029938.01.T01:intron 25.0%
! TTAAGGATATGATCAACAAA+AGG - Chr5:104228650-104228669 MsG0580029938.01.T01:intron 25.0%
! TTATTTAGCCCATCAAAATT+TGG + Chr5:104228946-104228965 None:intergenic 25.0%
! TTTCCATTCAGAAAAATTGA+AGG - Chr5:104227990-104228009 MsG0580029938.01.T01:CDS 25.0%
! TTTGTAATTAATCACTAGCT+AGG - Chr5:104228531-104228550 MsG0580029938.01.T01:intron 25.0%
!! AATCCATATAGGATTTTGTA+TGG - Chr5:104226391-104226410 MsG0580029938.01.T01:CDS 25.0%
!! ACTTTTGTCCAACAAATTTA+AGG - Chr5:104229055-104229074 MsG0580029938.01.T01:intron 25.0%
!! ATGCAAATATTACCCTTTTT+AGG + Chr5:104227159-104227178 None:intergenic 25.0%
!! CAAGTAATGCATCTTTTAAA+CGG + Chr5:104229244-104229263 None:intergenic 25.0%
!! TAACCTTCAATTTTTCTGAA+TGG + Chr5:104227996-104228015 None:intergenic 25.0%
!! TCTAAGATAATTTGGGATTT+GGG - Chr5:104226882-104226901 MsG0580029938.01.T01:intron 25.0%
!! TGAATTTTTACATTCCTCTA+TGG - Chr5:104228432-104228451 MsG0580029938.01.T01:CDS 25.0%
!!! AAATATTAGAGGCATTTTTC+TGG + Chr5:104229532-104229551 None:intergenic 25.0%
!!! AGAGTTTCATTTTTTCCATT+TGG - Chr5:104229937-104229956 MsG0580029938.01.T01:CDS 25.0%
!!! ATTTTCAAGTTACTAGTTAG+TGG - Chr5:104227910-104227929 MsG0580029938.01.T01:CDS 25.0%
!!! CATGAATTTTAACATTGTGT+TGG + Chr5:104226510-104226529 None:intergenic 25.0%
!!! GAGATAAATGAAGTTTGTTA+GGG - Chr5:104227680-104227699 MsG0580029938.01.T01:CDS 25.0%
!!! GCCTCTAATATTTTAGTATT+TGG - Chr5:104229539-104229558 MsG0580029938.01.T01:intron 25.0%
!!! TTCATTTTTTCCATTTGGAT+GGG - Chr5:104229942-104229961 MsG0580029938.01.T01:CDS 25.0%
!!! TTTCATTTTTTCCATTTGGA+TGG - Chr5:104229941-104229960 MsG0580029938.01.T01:CDS 25.0%
AAACATGACACATGACATTT+AGG + Chr5:104226568-104226587 None:intergenic 30.0%
AACTTTACTTGTTTGGACAA+TGG - Chr5:104228846-104228865 MsG0580029938.01.T01:intron 30.0%
ACAAGTAAGTATTATGGCTT+TGG + Chr5:104229668-104229687 None:intergenic 30.0%
ACAGAAATTATGACCGAATT+CGG - Chr5:104229322-104229341 MsG0580029938.01.T01:intron 30.0%
ACCAATTACAAACAGAGAAA+TGG - Chr5:104226240-104226259 MsG0580029938.01.T01:CDS 30.0%
ATTTCTCTGTTTGTAATTGG+TGG + Chr5:104226241-104226260 None:intergenic 30.0%
CAAAAGGGTGAAAATATTGA+AGG - Chr5:104228666-104228685 MsG0580029938.01.T01:intron 30.0%
CACAAGGAAATTAAAGAACA+CGG - Chr5:104228739-104228758 MsG0580029938.01.T01:intron 30.0%
CATAAAGGATCTTCTTAAGA+TGG - Chr5:104226417-104226436 MsG0580029938.01.T01:CDS 30.0%
CATAACCTCATACAAAATCA+TGG + Chr5:104229719-104229738 None:intergenic 30.0%
CTACTTCAACTTTACTTGTT+TGG - Chr5:104228839-104228858 MsG0580029938.01.T01:intron 30.0%
GATCATGTGAAATAGACATA+TGG - Chr5:104228285-104228304 MsG0580029938.01.T01:intron 30.0%
GGTATCACAATTAGATTGAA+TGG + Chr5:104227546-104227565 None:intergenic 30.0%
GTTGAGAAAAATGTGAAACT+TGG - Chr5:104229775-104229794 MsG0580029938.01.T01:intron 30.0%
TAGCAATCAAGTGAATGATA+AGG + Chr5:104226853-104226872 None:intergenic 30.0%
TCATGGTGCAACAATATAAT+TGG + Chr5:104229838-104229857 None:intergenic 30.0%
TCCATTTCTCTGTTTGTAAT+TGG + Chr5:104226244-104226263 None:intergenic 30.0%
TCTCCATACAAAATCCTATA+TGG + Chr5:104226397-104226416 None:intergenic 30.0%
TGACAAAGCCTTAAATTTGT+TGG + Chr5:104229066-104229085 None:intergenic 30.0%
TTAACATTGTGTTGGATGTA+GGG + Chr5:104226502-104226521 None:intergenic 30.0%
TTACAAACAGAGAAATGGAA+TGG - Chr5:104226245-104226264 MsG0580029938.01.T01:CDS 30.0%
TTTAACATTGTGTTGGATGT+AGG + Chr5:104226503-104226522 None:intergenic 30.0%
TTTCTCTGTTTGTAATTGGT+GGG + Chr5:104226240-104226259 None:intergenic 30.0%
TTTGCAGAAATGTACTTTGA+AGG + Chr5:104228076-104228095 None:intergenic 30.0%
TTTGGAAGTAGTTATGAAGA+AGG - Chr5:104228353-104228372 MsG0580029938.01.T01:CDS 30.0%
! AATTTTTCTGAATGGAAAGC+AGG + Chr5:104227988-104228007 None:intergenic 30.0%
! ACTTTGAAGGTCAAAAATGA+AGG + Chr5:104228063-104228082 None:intergenic 30.0%
! ATTTTTACATTCCTCTATGG+AGG - Chr5:104228435-104228454 MsG0580029938.01.T01:CDS 30.0%
! ATTTTTCTGAATGGAAAGCA+GGG + Chr5:104227987-104228006 None:intergenic 30.0%
! CTGAAAGCTTTATATTCAAC+TGG - Chr5:104229620-104229639 MsG0580029938.01.T01:intron 30.0%
! GATTTTGTATGGAGACATAA+AGG - Chr5:104226402-104226421 MsG0580029938.01.T01:CDS 30.0%
! GGAGATAAATGAAGTTTGTT+AGG - Chr5:104227679-104227698 MsG0580029938.01.T01:CDS 30.0%
! GTCTAAGATAATTTGGGATT+TGG - Chr5:104226881-104226900 MsG0580029938.01.T01:intron 30.0%
! TGGACAAAACTTTTCTCTAT+TGG - Chr5:104229981-104230000 MsG0580029938.01.T01:CDS 30.0%
! TGTTTTGCTTATTGTGATGT+GGG - Chr5:104227658-104227677 MsG0580029938.01.T01:CDS 30.0%
! TTCAATCCTGAAAGATTTTC+TGG - Chr5:104229889-104229908 MsG0580029938.01.T01:CDS 30.0%
!! AATACATCTATGATTTGCTC+AGG + Chr5:104227853-104227872 None:intergenic 30.0%
!! ATCATTGCAACTTTTGAAGA+AGG + Chr5:104228228-104228247 None:intergenic 30.0%
!! GAGGAAGTATTACAAATCTT+TGG - Chr5:104228910-104228929 MsG0580029938.01.T01:intron 30.0%
!! GTTATTTCTCGAACAACATT+TGG - Chr5:104228335-104228354 MsG0580029938.01.T01:CDS 30.0%
!! TTGTTTTGCTTATTGTGATG+TGG - Chr5:104227657-104227676 MsG0580029938.01.T01:CDS 30.0%
!!! GGGTTGATATTGTTTTTTGA+AGG - Chr5:104226902-104226921 MsG0580029938.01.T01:intron 30.0%
!!! TCATTTTTTCCATTTGGATG+GGG - Chr5:104229943-104229962 MsG0580029938.01.T01:CDS 30.0%
AAACATGTCATTCGTGTAAC+TGG + Chr5:104228560-104228579 None:intergenic 35.0%
AAAGCAAAGGAAGTGAAAGT+GGG + Chr5:104226190-104226209 None:intergenic 35.0%
AGGGTGAAAATATTGAAGGA+AGG - Chr5:104228670-104228689 MsG0580029938.01.T01:intron 35.0%
AGTCTTAATTACCTCCATAG+AGG + Chr5:104228449-104228468 None:intergenic 35.0%
ATCACTAGCCAAATTCTGAA+GGG + Chr5:104228315-104228334 None:intergenic 35.0%
ATTCCTCCAGAAAATCTTTC+AGG + Chr5:104229898-104229917 None:intergenic 35.0%
ATTGCTCTTAAGCCACAATA+CGG - Chr5:104230087-104230106 MsG0580029938.01.T01:CDS 35.0%
CACCATGATTGTGAATTATG+GGG - Chr5:104229850-104229869 MsG0580029938.01.T01:CDS 35.0%
CGAATGACATGTTTATTTGC+AGG - Chr5:104228566-104228585 MsG0580029938.01.T01:intron 35.0%
GCACCATGATTGTGAATTAT+GGG - Chr5:104229849-104229868 MsG0580029938.01.T01:CDS 35.0%
GGACAATGGTATTATTGAGT+AGG - Chr5:104228860-104228879 MsG0580029938.01.T01:intron 35.0%
GGATCTTCTTAAGATGGAAA+AGG - Chr5:104226423-104226442 MsG0580029938.01.T01:CDS 35.0%
GTAATTAATCACTAGCTAGG+AGG - Chr5:104228534-104228553 MsG0580029938.01.T01:intron 35.0%
GTGAAAATATTGAAGGAAGG+TGG - Chr5:104228673-104228692 MsG0580029938.01.T01:intron 35.0%
TAAGAGAACAAGGTCTTCAA+GGG - Chr5:104226368-104226387 MsG0580029938.01.T01:CDS 35.0%
TACAATATAGATACCGCACT+GGG + Chr5:104227745-104227764 None:intergenic 35.0%
TATATCATCGGTGAGATTCA+TGG + Chr5:104226464-104226483 None:intergenic 35.0%
TCCTTAGCGACAAAAAAATC+CGG + Chr5:104229274-104229293 None:intergenic 35.0%
TCTATTTCACATGATCCATC+TGG + Chr5:104228281-104228300 None:intergenic 35.0%
TGCACCATGATTGTGAATTA+TGG - Chr5:104229848-104229867 MsG0580029938.01.T01:CDS 35.0%
TTAAGAGAACAAGGTCTTCA+AGG - Chr5:104226367-104226386 MsG0580029938.01.T01:CDS 35.0%
TTACAATATAGATACCGCAC+TGG + Chr5:104227746-104227765 None:intergenic 35.0%
TTCTCTATTGGAAGCAAAGA+TGG - Chr5:104229993-104230012 MsG0580029938.01.T01:CDS 35.0%
TTCTCTGTTTGTAATTGGTG+GGG + Chr5:104226239-104226258 None:intergenic 35.0%
TTGTACCTACTATGGTCAAT+AGG - Chr5:104228590-104228609 MsG0580029938.01.T01:intron 35.0%
TTTCGCGAAAGCTCAATTAT+GGG + Chr5:104229754-104229773 None:intergenic 35.0%
! AATCCTGAAAGATTTTCTGG+AGG - Chr5:104229892-104229911 MsG0580029938.01.T01:CDS 35.0%
! ATAATATGAGCACCGTATTG+TGG + Chr5:104230102-104230121 None:intergenic 35.0%
! CGAATTTAGGCATTTTCGAT+TGG - Chr5:104227705-104227724 MsG0580029938.01.T01:CDS 35.0%
! CGTGTTCTTTAATTTCCTTG+TGG + Chr5:104228741-104228760 None:intergenic 35.0%
! GGTTACCATGATTTTGTATG+AGG - Chr5:104229711-104229730 MsG0580029938.01.T01:intron 35.0%
! GTTTGTTAGGGTTCGAATTT+AGG - Chr5:104227692-104227711 MsG0580029938.01.T01:CDS 35.0%
! TTTGGCTTCTTTAACCAATG+TGG - Chr5:104227236-104227255 MsG0580029938.01.T01:intron 35.0%
!! ATTTTCGATTGGTCCAACAA+TGG - Chr5:104227716-104227735 MsG0580029938.01.T01:intron 35.0%
!! GAGGTCTAAGCTTTTGAAAA+TGG - Chr5:104229093-104229112 MsG0580029938.01.T01:intron 35.0%
!! TTGCAACTTTTGAAGAAGGT+TGG + Chr5:104228224-104228243 None:intergenic 35.0%
!! TTGGTTTGGAACAAAACCAA+GGG - Chr5:104227813-104227832 MsG0580029938.01.T01:intron 35.0%
!! TTTGGTTTGGAACAAAACCA+AGG - Chr5:104227812-104227831 MsG0580029938.01.T01:intron 35.0%
!!! TTACTTTTTAACTAGTGCCC+CGG + Chr5:104227099-104227118 None:intergenic 35.0%
AAAAGTGGAGCAAGCATAGA+AGG - Chr5:104227953-104227972 MsG0580029938.01.T01:CDS 40.0%
AAACCAAGCGTCACAATGAT+GGG + Chr5:104226286-104226305 None:intergenic 40.0%
ACCTTACCAACAATTTGCAC+TGG + Chr5:104226779-104226798 None:intergenic 40.0%
ATACCACTTTGTAGCTCAGT+TGG - Chr5:104227561-104227580 MsG0580029938.01.T01:CDS 40.0%
ATCCTCCTATTGACCATAGT+AGG + Chr5:104228598-104228617 None:intergenic 40.0%
CAAAGCAAAGGAAGTGAAAG+TGG + Chr5:104226191-104226210 None:intergenic 40.0%
CAAAGTCCAGTGCAAATTGT+TGG - Chr5:104226770-104226789 MsG0580029938.01.T01:intron 40.0%
CACCCCATAATTCACAATCA+TGG + Chr5:104229855-104229874 None:intergenic 40.0%
CATCACTAGCCAAATTCTGA+AGG + Chr5:104228316-104228335 None:intergenic 40.0%
CTAAGGATCCTATTGTCATG+AGG - Chr5:104229139-104229158 MsG0580029938.01.T01:intron 40.0%
GAGAAGCTGTTAAGAGAACA+AGG - Chr5:104226358-104226377 MsG0580029938.01.T01:CDS 40.0%
GAGATTCATGGATTTAGACC+TGG + Chr5:104226452-104226471 None:intergenic 40.0%
GCAAGTTGTTCTACTTTGCA+GGG - Chr5:104228809-104228828 MsG0580029938.01.T01:intron 40.0%
GGAATTTCCAAAGCAACGAA+CGG - Chr5:104229913-104229932 MsG0580029938.01.T01:CDS 40.0%
GTCTTCAAGGGAATCCATAT+AGG - Chr5:104226380-104226399 MsG0580029938.01.T01:CDS 40.0%
GTTTCGCGAAAGCTCAATTA+TGG + Chr5:104229755-104229774 None:intergenic 40.0%
TACACGTGGCGTTATATCAT+CGG + Chr5:104226476-104226495 None:intergenic 40.0%
TACCTACTATGGTCAATAGG+AGG - Chr5:104228593-104228612 MsG0580029938.01.T01:intron 40.0%
TACTTTCGCGACCGAAATTT+AGG + Chr5:104229408-104229427 None:intergenic 40.0%
TATATGTTAGCGGCCGAATT+CGG + Chr5:104229338-104229357 None:intergenic 40.0%
TCCAGTGCAAATTGTTGGTA+AGG - Chr5:104226775-104226794 MsG0580029938.01.T01:intron 40.0%
TGCAAGTTGTTCTACTTTGC+AGG - Chr5:104228808-104228827 MsG0580029938.01.T01:intron 40.0%
TGGCTTAAGAGCAATTACTG+TGG + Chr5:104230082-104230101 None:intergenic 40.0%
TTAAGAGCAATTACTGTGGC+TGG + Chr5:104230078-104230097 None:intergenic 40.0%
TTAAGATGGAAAAGGAAGCC+AGG - Chr5:104226431-104226450 MsG0580029938.01.T01:CDS 40.0%
TTCTTTAACCAATGTGGCAC+TGG - Chr5:104227242-104227261 MsG0580029938.01.T01:intron 40.0%
TTGCAGGTTTGTACCTACTA+TGG - Chr5:104228582-104228601 MsG0580029938.01.T01:intron 40.0%
TTGTCGCTAAGGATGAAAGT+CGG - Chr5:104229281-104229300 MsG0580029938.01.T01:intron 40.0%
! AACAGCTTCTCTAGCTTCTT+TGG + Chr5:104226349-104226368 None:intergenic 40.0%
! AAGGCTTTGTCACAATCATG+AGG - Chr5:104229074-104229093 MsG0580029938.01.T01:intron 40.0%
! ATGCATTACTTGTTAGCGAC+CGG - Chr5:104229252-104229271 MsG0580029938.01.T01:intron 40.0%
! TCTTCTAGAGACAAACCACA+AGG - Chr5:104228723-104228742 MsG0580029938.01.T01:intron 40.0%
! TGTGACGCTTGGTTTGATAT+GGG - Chr5:104226291-104226310 MsG0580029938.01.T01:CDS 40.0%
! TTGTGACGCTTGGTTTGATA+TGG - Chr5:104226290-104226309 MsG0580029938.01.T01:CDS 40.0%
! TTTTGTCCAATGCAGATCCT+AGG + Chr5:104229970-104229989 None:intergenic 40.0%
!! AAGCTTTTGAAAATGGCTCC+TGG - Chr5:104229100-104229119 MsG0580029938.01.T01:intron 40.0%
!! AGCTTTTGAAAATGGCTCCT+GGG - Chr5:104229101-104229120 MsG0580029938.01.T01:intron 40.0%
!! TACTTTTTAACTAGTGCCCC+GGG + Chr5:104227098-104227117 None:intergenic 40.0%
!!! ACCGGATTTTTTTGTCGCTA+AGG - Chr5:104229270-104229289 MsG0580029938.01.T01:intron 40.0%
AACATTATCTGCTGGAGTGG+AGG - Chr5:104229804-104229823 MsG0580029938.01.T01:CDS 45.0%
AACTCTACCGTTCGTTGCTT+TGG + Chr5:104229923-104229942 None:intergenic 45.0%
AATGCTAACCAGTGCCACAT+TGG + Chr5:104227253-104227272 None:intergenic 45.0%
ACACGGAAACAACGTGAATG+TGG - Chr5:104228756-104228775 MsG0580029938.01.T01:intron 45.0%
AGCGTAGACCTCATGACAAT+AGG + Chr5:104229150-104229169 None:intergenic 45.0%
AGGATCCTTAGAGCCATTTG+AGG + Chr5:104229130-104229149 None:intergenic 45.0%
ATGGCCTTCCCTTCAGAATT+TGG - Chr5:104228304-104228323 MsG0580029938.01.T01:CDS 45.0%
ATTCCCATCATTGTGACGCT+TGG - Chr5:104226280-104226299 MsG0580029938.01.T01:CDS 45.0%
CAAACCAAGCGTCACAATGA+TGG + Chr5:104226287-104226306 None:intergenic 45.0%
CACGGAAACAACGTGAATGT+GGG - Chr5:104228757-104228776 MsG0580029938.01.T01:intron 45.0%
CCACACTGCAAATGTATTCC+TGG - Chr5:104229472-104229491 MsG0580029938.01.T01:intron 45.0%
CCACTCCAGCAGATAATGTT+AGG + Chr5:104229804-104229823 None:intergenic 45.0%
CCAGGAATACATTTGCAGTG+TGG + Chr5:104229475-104229494 None:intergenic 45.0%
CCTAACATTATCTGCTGGAG+TGG - Chr5:104229801-104229820 MsG0580029938.01.T01:CDS 45.0%
GAGGAAATGTTGTCTCCAGA+TGG - Chr5:104228263-104228282 MsG0580029938.01.T01:intron 45.0%
GGAGACCTAACATTATCTGC+TGG - Chr5:104229796-104229815 MsG0580029938.01.T01:CDS 45.0%
GGATCCTTAGAGCCATTTGA+GGG + Chr5:104229129-104229148 None:intergenic 45.0%
TATTGAGTAGGTACCCTGAG+TGG - Chr5:104228872-104228891 MsG0580029938.01.T01:intron 45.0%
TCTCGATATGTCTCAGTACG+AGG - Chr5:104229191-104229210 MsG0580029938.01.T01:intron 45.0%
TGACCAACTGAGCTACAAAG+TGG + Chr5:104227567-104227586 None:intergenic 45.0%
TGCTGAATTGGTTGTGGTTG+AGG - Chr5:104226323-104226342 MsG0580029938.01.T01:CDS 45.0%
TGGATGTAGGGAATTACACG+TGG + Chr5:104226490-104226509 None:intergenic 45.0%
TGTAATTGGTGGGGCAAAGA+AGG + Chr5:104226230-104226249 None:intergenic 45.0%
! CTAGCCAAATTCTGAAGGGA+AGG + Chr5:104228311-104228330 None:intergenic 45.0%
! TTGGTTTGATATGGGCATGG+AGG - Chr5:104226299-104226318 MsG0580029938.01.T01:CDS 45.0%
!! AGTGGTCTTGCTAGTCTTGA+GGG - Chr5:104227928-104227947 MsG0580029938.01.T01:CDS 45.0%
!! CTAGTCTTGAGGGAGAAAAG+TGG - Chr5:104227938-104227957 MsG0580029938.01.T01:CDS 45.0%
!! TAGTGGTCTTGCTAGTCTTG+AGG - Chr5:104227927-104227946 MsG0580029938.01.T01:CDS 45.0%
!! TAATAAATAATAAAGAAATA+AGG + Chr5:104228184-104228203 None:intergenic 5.0%
!! TTTATTATTTATTATACTAT+AGG - Chr5:104228190-104228209 MsG0580029938.01.T01:intron 5.0%
AATTGGTGGGGCAAAGAAGG+TGG + Chr5:104226227-104226246 None:intergenic 50.0%
ATCCTAGGACCCCATCCAAA+TGG + Chr5:104229955-104229974 None:intergenic 50.0%
CCAACAATGGAATCCCAGTG+CGG - Chr5:104227729-104227748 MsG0580029938.01.T01:intron 50.0%
CGCGAAAGCTCAATTATGGG+AGG + Chr5:104229751-104229770 None:intergenic 50.0%
GGAGGATGCTGAATTGGTTG+TGG - Chr5:104226317-104226336 MsG0580029938.01.T01:CDS 50.0%
GGTTCTGTGAGAATCACCCT+TGG + Chr5:104227832-104227851 None:intergenic 50.0%
TTCCAATCAGGGACAGATCC+AGG + Chr5:104229493-104229512 None:intergenic 50.0%
TTCCATTTGGATGGGGTCCT+AGG - Chr5:104229950-104229969 MsG0580029938.01.T01:CDS 50.0%
TTCCTGGATCTGTCCCTGAT+TGG - Chr5:104229488-104229507 MsG0580029938.01.T01:intron 50.0%
! CGCTTGGTTTGATATGGGCA+TGG - Chr5:104226296-104226315 MsG0580029938.01.T01:CDS 50.0%
! GGATCCCTCAAATGGCTCTA+AGG - Chr5:104229122-104229141 MsG0580029938.01.T01:intron 50.0%
AGAGCCATTTGAGGGATCCC+AGG + Chr5:104229121-104229140 None:intergenic 55.0%
CCGCACTGGGATTCCATTGT+TGG + Chr5:104227732-104227751 None:intergenic 55.0%
GGGCATGGAGGATGCTGAAT+TGG - Chr5:104226311-104226330 MsG0580029938.01.T01:CDS 55.0%
GGTCATGCTAACCAGTGTCC+CGG - Chr5:104227077-104227096 MsG0580029938.01.T01:intron 55.0%
GTACCCTGAGTGGCAAGCAA+GGG - Chr5:104228882-104228901 MsG0580029938.01.T01:intron 55.0%
GTCATGCTAACCAGTGTCCC+GGG - Chr5:104227078-104227097 MsG0580029938.01.T01:intron 55.0%
TCATGCTAACCAGTGTCCCG+GGG - Chr5:104227079-104227098 MsG0580029938.01.T01:intron 55.0%
TGAGTGGCAAGCAAGGGCAA+GGG - Chr5:104228888-104228907 MsG0580029938.01.T01:intron 55.0%
TGGGGTCCTAGGATCTGCAT+TGG - Chr5:104229961-104229980 MsG0580029938.01.T01:CDS 55.0%
TGTGGCTGGAGCATGAGCAT+AGG + Chr5:104230064-104230083 None:intergenic 55.0%
TTGCCCTTGCTTGCCACTCA+GGG + Chr5:104228888-104228907 None:intergenic 55.0%
CTGAGTGGCAAGCAAGGGCA+AGG - Chr5:104228887-104228906 MsG0580029938.01.T01:intron 60.0%
CTTGCCCTTGCTTGCCACTC+AGG + Chr5:104228889-104228908 None:intergenic 60.0%
GCTGGAGCATGAGCATAGGC+TGG + Chr5:104230060-104230079 None:intergenic 60.0%
GGCTCCTGGGATCCCTCAAA+TGG - Chr5:104229114-104229133 MsG0580029938.01.T01:intron 60.0%
GGTACCCTGAGTGGCAAGCA+AGG - Chr5:104228881-104228900 MsG0580029938.01.T01:intron 60.0%
TAACTAGTGCCCCGGGACAC+TGG + Chr5:104227091-104227110 None:intergenic 60.0%
GTGGCAAGCAAGGGCAAGGG+AGG - Chr5:104228891-104228910 MsG0580029938.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 104226172 104230143 104226172 ID=MsG0580029938.01;Name=MsG0580029938.01
Chr5 mRNA 104226172 104230143 104226172 ID=MsG0580029938.01.T01;Parent=MsG0580029938.01;Name=MsG0580029938.01.T01;_AED=0.28;_eAED=0.29;_QI=0|0.25|0|1|1|1|5|0|509
Chr5 exon 104229786 104230143 104229786 ID=MsG0580029938.01.T01:exon:15189;Parent=MsG0580029938.01.T01
Chr5 exon 104228304 104228518 104228304 ID=MsG0580029938.01.T01:exon:15188;Parent=MsG0580029938.01.T01
Chr5 exon 104227859 104228103 104227859 ID=MsG0580029938.01.T01:exon:15187;Parent=MsG0580029938.01.T01
Chr5 exon 104227448 104227727 104227448 ID=MsG0580029938.01.T01:exon:15186;Parent=MsG0580029938.01.T01
Chr5 exon 104226172 104226603 104226172 ID=MsG0580029938.01.T01:exon:15185;Parent=MsG0580029938.01.T01
Chr5 CDS 104229786 104230143 104229786 ID=MsG0580029938.01.T01:cds;Parent=MsG0580029938.01.T01
Chr5 CDS 104228304 104228518 104228304 ID=MsG0580029938.01.T01:cds;Parent=MsG0580029938.01.T01
Chr5 CDS 104227859 104228103 104227859 ID=MsG0580029938.01.T01:cds;Parent=MsG0580029938.01.T01
Chr5 CDS 104227448 104227727 104227448 ID=MsG0580029938.01.T01:cds;Parent=MsG0580029938.01.T01
Chr5 CDS 104226172 104226603 104226172 ID=MsG0580029938.01.T01:cds;Parent=MsG0580029938.01.T01
Gene Sequence

>MsG0580029938.01.T01

TTGATTTCATATATACCCACTTTCACTTCCTTTGCTTTGTCATTTACATTATCCACCTTCTTTGCCCCACCAATTACAAACAGAGAAATGGAATGGTATTCAAGCATCATTCCCATCATTGTGACGCTTGGTTTGATATGGGCATGGAGGATGCTGAATTGGTTGTGGTTGAGGCCAAAGAAGCTAGAGAAGCTGTTAAGAGAACAAGGTCTTCAAGGGAATCCATATAGGATTTTGTATGGAGACATAAAGGATCTTCTTAAGATGGAAAAGGAAGCCAGGTCTAAATCCATGAATCTCACCGATGATATAACGCCACGTGTAATTCCCTACATCCAACACAATGTTAAAATTCATGGGAAGAATTTTTTTATTTGGTTTGGAACAAAACCAAGGGTGATTCTCACAGAACCTGAGCAAATCATAGATGTATTGAACAAGATCTCTGACTTTCCAAAGAATAATCATAAGATTTTCAAGTTACTAGTTAGTGGTCTTGCTAGTCTTGAGGGAGAAAAGTGGAGCAAGCATAGAAGGCTAATCAACCCTGCTTTCCATTCAGAAAAATTGAAGGTTATGACACCAACCTTCTTCAAAAGTTGCAATGATTTAATTAGAAAATGGGAGGAAATGTTGTCTCCAGATGGATCATGTGAAATAGACATATGGCCTTCCCTTCAGAATTTGGCTAGTGATGTTATTTCTCGAACAACATTTGGAAGTAGTTATGAAGAAGGAAGAAGAATATTTCAACTTCAAATTGAGCAAGCTGAACTTATGACAAAAGTTCAAATGAATTTTTACATTCCTCTATGGAGGTTTGTACCTACTATGGTCAATAGGAGGATTAATGAAATTGGGAAAGATATAAAATCTTCACTTAAGGATATGATCAACAAAAGGGTGAAAATATTGAAGGAAGGTGGAGAAAATAAGAATGACTTATTAGGTATTCTTCTAGAGACAAACCACAAGGAAATTAAAGAACACGGAAACAACGTGAATGTGGGAATGAATATTGAAGATGTAATTCAGGAATGCAAGTTGTTCTACTTTGCAGGGCAAGAAACTACTTCAACTTTACTTGTTTGGACAATGGTTACCATGATTTTGTATGAGGTTATGAGATTATATCCTCCCATAATTGAGCTTTCGCGAAACGTTGAGAAAAATGTGAAACTTGGAGACCTAACATTATCTGCTGGAGTGGAGGTTTTCTTGCCAATTATATTGTTGCACCATGATTGTGAATTATGGGGTGATGATGCTAAAATGTTCAATCCTGAAAGATTTTCTGGAGGAATTTCCAAAGCAACGAACGGTAGAGTTTCATTTTTTCCATTTGGATGGGGTCCTAGGATCTGCATTGGACAAAACTTTTCTCTATTGGAAGCAAAGATGGCAATGACGTTGATTTTACAACATTTCTCATTTGAACTTTCTCCAGCCTATGCTCATGCTCCAGCCACAGTAATTGCTCTTAAGCCACAATACGGTGCTCATATTATTCTGCGTAAATTGGAAACATAA

Protein sequence

>MsG0580029938.01.T01

LISYIPTFTSFALSFTLSTFFAPPITNREMEWYSSIIPIIVTLGLIWAWRMLNWLWLRPKKLEKLLREQGLQGNPYRILYGDIKDLLKMEKEARSKSMNLTDDITPRVIPYIQHNVKIHGKNFFIWFGTKPRVILTEPEQIIDVLNKISDFPKNNHKIFKLLVSGLASLEGEKWSKHRRLINPAFHSEKLKVMTPTFFKSCNDLIRKWEEMLSPDGSCEIDIWPSLQNLASDVISRTTFGSSYEEGRRIFQLQIEQAELMTKVQMNFYIPLWRFVPTMVNRRINEIGKDIKSSLKDMINKRVKILKEGGENKNDLLGILLETNHKEIKEHGNNVNVGMNIEDVIQECKLFYFAGQETTSTLLVWTMVTMILYEVMRLYPPIIELSRNVEKNVKLGDLTLSAGVEVFLPIILLHHDCELWGDDAKMFNPERFSGGISKATNGRVSFFPFGWGPRICIGQNFSLLEAKMAMTLILQHFSFELSPAYAHAPATVIALKPQYGAHIILRKLET*