AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000822.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000822.01.T01 MTR_1g007800 92.632 95 6 1 1 95 90 183 1.26e-49 159
MsG0180000822.01.T01 MTR_4g058830 39.560 91 55 0 5 95 47 137 2.64e-18 77.4
MsG0180000822.01.T01 MTR_4g058840 42.529 87 50 0 9 95 105 191 7.92e-18 77.0
MsG0180000822.01.T01 MTR_4g058820 42.529 87 50 0 9 95 105 191 7.92e-18 77.0
MsG0180000822.01.T01 MTR_4g058810 41.379 87 51 0 9 95 105 191 2.10e-17 75.9
MsG0180000822.01.T01 MTR_1g051165 35.632 87 56 0 9 95 113 199 7.46e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000822.01.T01 AT3G01980 56.322 87 38 0 9 95 74 160 9.89e-31 110
MsG0180000822.01.T01 AT3G01980 56.322 87 38 0 9 95 98 184 1.74e-30 110
MsG0180000822.01.T01 AT3G01980 56.322 87 38 0 9 95 98 184 1.74e-30 110
MsG0180000822.01.T01 AT3G01980 56.322 87 38 0 9 95 128 214 3.64e-30 109
MsG0180000822.01.T01 AT3G01980 53.086 81 38 0 9 89 98 178 3.00e-26 97.1
MsG0180000822.01.T01 AT3G01980 53.086 81 38 0 9 89 128 208 5.71e-26 97.1
MsG0180000822.01.T01 AT1G63380 35.632 87 56 0 9 95 112 198 1.60e-14 68.2
MsG0180000822.01.T01 AT1G63380 35.632 87 56 0 9 95 110 196 1.83e-14 68.2
MsG0180000822.01.T01 AT1G63380 35.632 87 56 0 9 95 114 200 1.86e-14 68.2
MsG0180000822.01.T01 AT1G63380 35.632 87 56 0 9 95 117 203 2.04e-14 67.8
MsG0180000822.01.T01 AT3G55290 36.782 87 54 1 9 95 113 198 2.22e-14 67.8
MsG0180000822.01.T01 AT3G55290 36.782 87 54 1 9 95 112 197 2.32e-14 67.8
MsG0180000822.01.T01 AT1G62610 34.483 87 57 0 9 95 109 195 7.96e-14 66.2
MsG0180000822.01.T01 AT1G62610 34.483 87 57 0 9 95 114 200 8.12e-14 66.2
MsG0180000822.01.T01 AT1G62610 34.483 87 57 0 9 95 110 196 8.36e-14 66.2
MsG0180000822.01.T01 AT1G62610 34.483 87 57 0 9 95 108 194 8.40e-14 66.2
MsG0180000822.01.T01 AT2G17845 36.364 88 55 1 9 95 143 230 2.40e-13 65.1
MsG0180000822.01.T01 AT3G46170 35.632 87 55 1 9 95 121 206 1.88e-12 62.4
MsG0180000822.01.T01 AT3G55310 32.184 87 58 1 9 95 112 197 1.74e-11 59.7

Find 93 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCGTCACAGTTAAAATT+TGG 0.112516 1:+11669336 MsG0180000822.01.T01:three_prime_UTR
GATATCACACAGATAAAATT+TGG 0.155998 1:+11669269 MsG0180000822.01.T01:three_prime_UTR
AACAAATAATGTATTATTTC+GGG 0.194269 1:-11669751 None:intergenic
CTTTCCCTTCCCACCGATAA+TGG 0.206019 1:-11668993 None:intergenic
TGTATTTATAACGTCGATAA+TGG 0.234136 1:+11667025 MsG0180000822.01.T01:CDS
CATTGTTTGCCTGTGCCTTT+AGG 0.244487 1:+11669368 MsG0180000822.01.T01:three_prime_UTR
GTAAAACCATTCAGTTTGTT+AGG 0.247891 1:+11669655 MsG0180000822.01.T01:three_prime_UTR
ATGAATGTGTAAGCAAAATT+TGG 0.253798 1:+11669595 MsG0180000822.01.T01:three_prime_UTR
AAACAAATAATGTATTATTT+CGG 0.264261 1:-11669752 None:intergenic
AATGATTGAACCATGGTATT+AGG 0.275785 1:+11669476 MsG0180000822.01.T01:three_prime_UTR
ATTCGTCACAGTTAAAATTT+GGG 0.347921 1:+11669337 MsG0180000822.01.T01:three_prime_UTR
AAGGGAAAGGGCAGAGAAGT+TGG 0.349755 1:+11669007 MsG0180000822.01.T01:CDS
CTGTGCTCCATCAACATATA+TGG 0.350340 1:-11669135 None:intergenic
ATTCTACACACCTCTCTTCC+AGG 0.351963 1:-11669501 None:intergenic
CTGGAGTTCAGCAGTTAGTT+CGG 0.353967 1:+11667099 MsG0180000822.01.T01:CDS
CTGTTAACTCAAGATGATCT+TGG 0.368618 1:-11666899 None:intergenic
GACGAATCATGTCATATCTA+TGG 0.372801 1:-11669321 None:intergenic
TGTTGAAGTTCCGCATCCTT+TGG 0.387285 1:-11666989 None:intergenic
TTTCCCTTCCCACCGATAAT+GGG 0.391273 1:-11668992 None:intergenic
GTATTTATAACGTCGATAAT+GGG 0.394081 1:+11667026 MsG0180000822.01.T01:CDS
GCATATGCCTCAGCCTTGGC+TGG 0.394449 1:+11667080 MsG0180000822.01.T01:CDS
TGCTGCATATGCCTCAGCCT+TGG 0.396535 1:+11667076 MsG0180000822.01.T01:CDS
CAGAGAAATAGAGGACATAA+TGG 0.396914 1:+11669531 MsG0180000822.01.T01:three_prime_UTR
GGATTCTATTCATCTGAAAC+AGG 0.402959 1:+11666870 MsG0180000822.01.T01:CDS
GAGGCATATGCAGCAGCTCC+TGG 0.414436 1:-11667068 None:intergenic
TGGAGTTCAGCAGTTAGTTC+GGG 0.420239 1:+11667100 MsG0180000822.01.T01:CDS
TACCATGGTTCAATCATTAG+AGG 0.426104 1:-11669471 None:intergenic
CAGGCATCGGCTATGGAGAT+AGG 0.432742 1:+11668913 MsG0180000822.01.T01:intron
ATAATGGGAATTCATCTTCC+AGG 0.433329 1:-11668977 None:intergenic
ACACAGATAAAATTTGGGTT+TGG 0.435765 1:+11669275 MsG0180000822.01.T01:three_prime_UTR
TAAAACCATTCAGTTTGTTA+GGG 0.442469 1:+11669656 MsG0180000822.01.T01:three_prime_UTR
AGCTTCACTAAATAAATTTG+TGG 0.446349 1:+11669422 MsG0180000822.01.T01:three_prime_UTR
AAATTTGGTTATAAGAATGA+TGG 0.447407 1:+11669610 MsG0180000822.01.T01:three_prime_UTR
ATATCACACAGATAAAATTT+GGG 0.452055 1:+11669270 MsG0180000822.01.T01:three_prime_UTR
GGAAGATGAATTCCCATTAT+CGG 0.455189 1:+11668980 MsG0180000822.01.T01:CDS
GGCAGAGAAGTTGGTGAAAG+AGG 0.458842 1:+11669016 MsG0180000822.01.T01:exon
CACATAAAGGAACGCATCCT+AGG 0.467073 1:-11669170 None:intergenic
CTTCCAGGGTCCTAATACCA+TGG 0.472428 1:-11669486 None:intergenic
TCAGAAAGAGGGCTTTATCC+AGG 0.475145 1:+11667050 MsG0180000822.01.T01:CDS
ATTCATGTTCAGAGAAATAG+AGG 0.475567 1:+11669522 MsG0180000822.01.T01:three_prime_UTR
GTGGAAGAACAATCACATAA+AGG 0.476583 1:-11669183 None:intergenic
GCTTCACTAAATAAATTTGT+GGG 0.489772 1:+11669423 MsG0180000822.01.T01:three_prime_UTR
AGAGAAATAGAGGACATAAT+GGG 0.491979 1:+11669532 MsG0180000822.01.T01:three_prime_UTR
GGAACAACCATATATGTTGA+TGG 0.493494 1:+11669128 MsG0180000822.01.T01:three_prime_UTR
TCTATCCCTAACAAACTGAA+TGG 0.496507 1:-11669661 None:intergenic
AGAAAGTATTGGTTCTCTAA+AGG 0.507330 1:+11669681 MsG0180000822.01.T01:three_prime_UTR
AATCATGTCATATCTATGGA+TGG 0.508782 1:-11669317 None:intergenic
GTCATCTATCTAATCAGTGA+TGG 0.511788 1:+11669089 MsG0180000822.01.T01:three_prime_UTR
ATTATCGGTGGGAAGGGAAA+GGG 0.515455 1:+11668995 MsG0180000822.01.T01:CDS
TGAGAGTCATAGGAGAGAAG+TGG 0.520603 1:+11669569 MsG0180000822.01.T01:three_prime_UTR
CATTATCGGTGGGAAGGGAA+AGG 0.521918 1:+11668994 MsG0180000822.01.T01:CDS
TTCGTGTATTTGAGAGTCAT+AGG 0.522875 1:+11669559 MsG0180000822.01.T01:three_prime_UTR
TCGATAATGGGTTCAGAAAG+AGG 0.524746 1:+11667038 MsG0180000822.01.T01:CDS
TGTGTACATCTAAAGCCTAA+AGG 0.530003 1:-11669383 None:intergenic
AGGCTGTTGGCCAAAGGATG+CGG 0.532056 1:+11666979 MsG0180000822.01.T01:CDS
AATTTGGTTATAAGAATGAT+GGG 0.543040 1:+11669611 MsG0180000822.01.T01:three_prime_UTR
AAAGGAACGCATCCTAGGCC+TGG 0.552291 1:-11669165 None:intergenic
GCAATAGCATTAACTCTGAT+CGG 0.554201 1:-11668942 None:intergenic
CTGAACTCCAGCCAAGGCTG+AGG 0.556384 1:-11667087 None:intergenic
TATTAAAGGCTGTTGGCCAA+AGG 0.558624 1:+11666973 MsG0180000822.01.T01:CDS
GTATTATTTCGGGAAATCAA+AGG 0.563932 1:-11669741 None:intergenic
GATGGGTCATGCTACATGAC+AGG 0.564383 1:+11669107 MsG0180000822.01.T01:three_prime_UTR
TTGTTAGGGATAGAAAGTAT+TGG 0.569687 1:+11669670 MsG0180000822.01.T01:three_prime_UTR
AATTCCCATTATCGGTGGGA+AGG 0.575283 1:+11668988 MsG0180000822.01.T01:CDS
ATCATGTCATATCTATGGAT+GGG 0.575755 1:-11669316 None:intergenic
CATCTAAAGCCTAAAGGCAC+AGG 0.576611 1:-11669377 None:intergenic
ATTCCCATTATCGGTGGGAA+GGG 0.578456 1:+11668989 MsG0180000822.01.T01:CDS
AGAGTTAATGCTATTGCAAG+AGG 0.584311 1:+11668948 MsG0180000822.01.T01:CDS
AGGCAGCACCACTTGAGAGA+TGG 0.586030 1:+11669036 MsG0180000822.01.T01:three_prime_UTR
CACAGTCTATAACCAGGCCT+AGG 0.587077 1:+11669153 MsG0180000822.01.T01:three_prime_UTR
TTATAAGAATGATGGGTGGA+AGG 0.587486 1:+11669618 MsG0180000822.01.T01:three_prime_UTR
CGATAATGGGTTCAGAAAGA+GGG 0.588137 1:+11667039 MsG0180000822.01.T01:CDS
GGAATTCATCTTCCAGGTGA+AGG 0.588874 1:-11668971 None:intergenic
TTCTACACACCTCTCTTCCA+GGG 0.588968 1:-11669500 None:intergenic
CTTTGAAAAGTTCCTCGCTG+TGG 0.590199 1:-11669202 None:intergenic
TCATCTATCTAATCAGTGAT+GGG 0.590549 1:+11669090 MsG0180000822.01.T01:three_prime_UTR
TATTGCAAGAGGCCTTCACC+TGG 0.592366 1:+11668959 MsG0180000822.01.T01:CDS
TGCGGAACTTCAACAAGGGT+GGG 0.594166 1:+11666997 MsG0180000822.01.T01:CDS
TATCGACGTTATAAATACAA+TGG 0.599236 1:-11667021 None:intergenic
ACATCAAGCCATCTCTCAAG+TGG 0.599720 1:-11669044 None:intergenic
ATGCGGAACTTCAACAAGGG+TGG 0.606430 1:+11666996 MsG0180000822.01.T01:CDS
AGATGAATTCCCATTATCGG+TGG 0.607123 1:+11668983 MsG0180000822.01.T01:CDS
GTATTAGGACCCTGGAAGAG+AGG 0.621345 1:+11669491 MsG0180000822.01.T01:three_prime_UTR
GAACCATGGTATTAGGACCC+TGG 0.634211 1:+11669483 MsG0180000822.01.T01:three_prime_UTR
AGGATGCGGAACTTCAACAA+GGG 0.642788 1:+11666993 MsG0180000822.01.T01:CDS
GATGAATTCCCATTATCGGT+GGG 0.643626 1:+11668984 MsG0180000822.01.T01:CDS
CTAAAGGCACAGGCAAACAA+TGG 0.644013 1:-11669367 None:intergenic
AAGGATGCGGAACTTCAACA+AGG 0.644362 1:+11666992 MsG0180000822.01.T01:CDS
TTGGTTATAAGAATGATGGG+TGG 0.649790 1:+11669614 MsG0180000822.01.T01:three_prime_UTR
ATGGAGCACAGTCTATAACC+AGG 0.654617 1:+11669147 MsG0180000822.01.T01:three_prime_UTR
ATCCTCTAATGATTGAACCA+TGG 0.673858 1:+11669469 MsG0180000822.01.T01:three_prime_UTR
TAACTGCTGAACTCCAGCCA+AGG 0.675105 1:-11667093 None:intergenic
GTGATTGTTCTTCCACAGCG+AGG 0.677621 1:+11669190 MsG0180000822.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAATAATGTATTATTT+CGG - Chr1:11669755-11669774 None:intergenic 10.0%
!! TGAAATAATAAATCTTTAAA+AGG + Chr1:11667943-11667962 MsG0180000822.01.T01:intron 10.0%
!! TTAAAATAATAATTATGAGA+AGG + Chr1:11667828-11667847 MsG0180000822.01.T01:intron 10.0%
!!! GAAATAATAAATCTTTAAAA+GGG + Chr1:11667944-11667963 MsG0180000822.01.T01:intron 10.0%
!!! TCTCATAATTATTATTTTAA+CGG - Chr1:11667828-11667847 None:intergenic 10.0%
!! AACAAATAATGTATTATTTC+GGG - Chr1:11669754-11669773 None:intergenic 15.0%
!! TAGCTTAATTAAGTATAAAT+TGG + Chr1:11668747-11668766 MsG0180000822.01.T01:intron 15.0%
!!! AATAGTGAAGATAAATTTTA+TGG + Chr1:11666938-11666957 MsG0180000822.01.T01:CDS 15.0%
!!! TTATTTAGAGTTTTCTTTTT+TGG - Chr1:11667268-11667287 None:intergenic 15.0%
!! AAATTTGGTTATAAGAATGA+TGG + Chr1:11669610-11669629 MsG0180000822.01.T01:three_prime_UTR 20.0%
!! AATTTGGTTATAAGAATGAT+GGG + Chr1:11669611-11669630 MsG0180000822.01.T01:three_prime_UTR 20.0%
!! ATATCACACAGATAAAATTT+GGG + Chr1:11669270-11669289 MsG0180000822.01.T01:three_prime_UTR 20.0%
!! TATTTCTTACTAATGAGATA+GGG + Chr1:11668404-11668423 MsG0180000822.01.T01:intron 20.0%
!!! AACTTTTATAGCAGATAATA+AGG - Chr1:11668871-11668890 None:intergenic 20.0%
!!! ATTAATGGATATGAAAAGAA+AGG - Chr1:11668074-11668093 None:intergenic 20.0%
!!! TGGCATGATATAATTTTTAT+GGG + Chr1:11668579-11668598 MsG0180000822.01.T01:intron 20.0%
!!! TTATTTCTTACTAATGAGAT+AGG + Chr1:11668403-11668422 MsG0180000822.01.T01:intron 20.0%
!!! TTTTACTTGCTTTTCATATT+TGG + Chr1:11668792-11668811 MsG0180000822.01.T01:intron 20.0%
! AAATAAGAGATTTCATGACT+TGG + Chr1:11667282-11667301 MsG0180000822.01.T01:intron 25.0%
! ACTCCAATGATGATAATTAA+CGG - Chr1:11668229-11668248 None:intergenic 25.0%
! AGCTTCACTAAATAAATTTG+TGG + Chr1:11669422-11669441 MsG0180000822.01.T01:three_prime_UTR 25.0%
! ATGAATGTGTAAGCAAAATT+TGG + Chr1:11669595-11669614 MsG0180000822.01.T01:three_prime_UTR 25.0%
! ATTATCTGCTATAAAAGTTG+AGG + Chr1:11668872-11668891 MsG0180000822.01.T01:intron 25.0%
! ATTCGTCACAGTTAAAATTT+GGG + Chr1:11669337-11669356 MsG0180000822.01.T01:three_prime_UTR 25.0%
! GATATCACACAGATAAAATT+TGG + Chr1:11669269-11669288 MsG0180000822.01.T01:three_prime_UTR 25.0%
! GATTGATAAAAGTAAAGAAC+AGG - Chr1:11667238-11667257 None:intergenic 25.0%
! GCTTCACTAAATAAATTTGT+GGG + Chr1:11669423-11669442 MsG0180000822.01.T01:three_prime_UTR 25.0%
! GTATTTATAACGTCGATAAT+GGG + Chr1:11667026-11667045 MsG0180000822.01.T01:CDS 25.0%
! TAATTGGGTTAAATCAATGT+GGG - Chr1:11667582-11667601 None:intergenic 25.0%
! TATCGACGTTATAAATACAA+TGG - Chr1:11667024-11667043 None:intergenic 25.0%
! TCAAAATCAAGGAAGTAATA+AGG - Chr1:11668327-11668346 None:intergenic 25.0%
! TCATTTATTTGAAAATCAGC+TGG + Chr1:11667202-11667221 MsG0180000822.01.T01:intron 25.0%
! TCCTCTATTAAAGAATTCTT+CGG - Chr1:11667450-11667469 None:intergenic 25.0%
! TGTAACAAAGGTTTAATGTT+AGG + Chr1:11668257-11668276 MsG0180000822.01.T01:intron 25.0%
! TGTATTTATAACGTCGATAA+TGG + Chr1:11667025-11667044 MsG0180000822.01.T01:CDS 25.0%
! TTTGGAAATATTAGAAAGTC+TGG + Chr1:11668810-11668829 MsG0180000822.01.T01:intron 25.0%
!! AATAAATCTTTAAAAGGGAC+AGG + Chr1:11667949-11667968 MsG0180000822.01.T01:intron 25.0%
!! AGTGAAGATAAATTTTATGG+CGG + Chr1:11666941-11666960 MsG0180000822.01.T01:CDS 25.0%
!! ATTTTGTATAGTAACTGAGA+TGG - Chr1:11668025-11668044 None:intergenic 25.0%
!! GTGGCATGATATAATTTTTA+TGG + Chr1:11668578-11668597 MsG0180000822.01.T01:intron 25.0%
!! TTAGAAGCAGATATACTTTT+AGG + Chr1:11667731-11667750 MsG0180000822.01.T01:intron 25.0%
!! TTGTCATTTGGATTATATCT+TGG + Chr1:11667678-11667697 MsG0180000822.01.T01:intron 25.0%
!!! CAAAAGAAAAAGGTACTATT+TGG + Chr1:11668480-11668499 MsG0180000822.01.T01:intron 25.0%
!!! GTAAATTCTTTTGACTTTCA+TGG + Chr1:11667358-11667377 MsG0180000822.01.T01:intron 25.0%
!!! TAAAACCATTCAGTTTGTTA+GGG + Chr1:11669656-11669675 MsG0180000822.01.T01:three_prime_UTR 25.0%
AATCATGTCATATCTATGGA+TGG - Chr1:11669320-11669339 None:intergenic 30.0%
AATGATTGAACCATGGTATT+AGG + Chr1:11669476-11669495 MsG0180000822.01.T01:three_prime_UTR 30.0%
AATGTTATCTGCAGAACAAA+AGG - Chr1:11667165-11667184 None:intergenic 30.0%
AGAAGTTTGAACAGATAGTT+AGG - Chr1:11668647-11668666 None:intergenic 30.0%
AGAGAAATAGAGGACATAAT+GGG + Chr1:11669532-11669551 MsG0180000822.01.T01:three_prime_UTR 30.0%
AGCTGACAAATGAATTTCTA+TGG + Chr1:11668540-11668559 MsG0180000822.01.T01:intron 30.0%
AGTTACTACATTGTTTGTGT+TGG + Chr1:11667649-11667668 MsG0180000822.01.T01:intron 30.0%
ATCATGTCATATCTATGGAT+GGG - Chr1:11669319-11669338 None:intergenic 30.0%
ATTCATGTTCAGAGAAATAG+AGG + Chr1:11669522-11669541 MsG0180000822.01.T01:three_prime_UTR 30.0%
CAGTTAGGTGATTAAATGAT+TGG - Chr1:11668134-11668153 None:intergenic 30.0%
CCTCTATTAAAGAATTCTTC+GGG - Chr1:11667449-11667468 None:intergenic 30.0%
CTAAAAAACTTCATCACACA+AGG - Chr1:11667330-11667349 None:intergenic 30.0%
CTAATTGGGTTAAATCAATG+TGG - Chr1:11667583-11667602 None:intergenic 30.0%
GATTCGTCACAGTTAAAATT+TGG + Chr1:11669336-11669355 MsG0180000822.01.T01:three_prime_UTR 30.0%
GTATTATTTCGGGAAATCAA+AGG - Chr1:11669744-11669763 None:intergenic 30.0%
GTTACTACATTGTTTGTGTT+GGG + Chr1:11667650-11667669 MsG0180000822.01.T01:intron 30.0%
TAAGTTAGGGTAGAGATTAA+TGG - Chr1:11668089-11668108 None:intergenic 30.0%
TCAATTTCCTATTACAGTAG+AGG - Chr1:11668358-11668377 None:intergenic 30.0%
TCATCTATCTAATCAGTGAT+GGG + Chr1:11669090-11669109 MsG0180000822.01.T01:three_prime_UTR 30.0%
TCATTTGGATTATATCTTGG+TGG + Chr1:11667681-11667700 MsG0180000822.01.T01:intron 30.0%
TCTACTGTAATAGGAAATTG+AGG + Chr1:11668357-11668376 MsG0180000822.01.T01:intron 30.0%
TGAGATGATTATGTCAAACT+GGG + Chr1:11668508-11668527 MsG0180000822.01.T01:intron 30.0%
TGTCCGTTAATTATCATCAT+TGG + Chr1:11668223-11668242 MsG0180000822.01.T01:intron 30.0%
TTGAGATGATTATGTCAAAC+TGG + Chr1:11668507-11668526 MsG0180000822.01.T01:intron 30.0%
TTGGTTGTAATAACAGTAGT+TGG - Chr1:11668115-11668134 None:intergenic 30.0%
TTTCGCTAAGCAAAAGAAAA+AGG + Chr1:11668470-11668489 MsG0180000822.01.T01:intron 30.0%
! ACACAGATAAAATTTGGGTT+TGG + Chr1:11669275-11669294 MsG0180000822.01.T01:three_prime_UTR 30.0%
! ACTTCTGTAATTTTATCCTG+CGG + Chr1:11668661-11668680 MsG0180000822.01.T01:intron 30.0%
! ATGATGATAATTAACGGACA+AGG - Chr1:11668223-11668242 None:intergenic 30.0%
! ATTACTTCCTTGATTTTGAG+TGG + Chr1:11668328-11668347 MsG0180000822.01.T01:intron 30.0%
! GTAAAACCATTCAGTTTGTT+AGG + Chr1:11669655-11669674 MsG0180000822.01.T01:three_prime_UTR 30.0%
! TGGTTTTTATTAAAGGCTGT+TGG + Chr1:11666966-11666985 MsG0180000822.01.T01:CDS 30.0%
! TTGTTAGGGATAGAAAGTAT+TGG + Chr1:11669670-11669689 MsG0180000822.01.T01:three_prime_UTR 30.0%
!! ACAGTAGTTGGTAATAAGTT+AGG - Chr1:11668103-11668122 None:intergenic 30.0%
!! AGAAAGTATTGGTTCTCTAA+AGG + Chr1:11669681-11669700 MsG0180000822.01.T01:three_prime_UTR 30.0%
!! AGTGTTGCTTGGTTAATTTA+TGG + Chr1:11667609-11667628 MsG0180000822.01.T01:intron 30.0%
!! CAGTAGTTGGTAATAAGTTA+GGG - Chr1:11668102-11668121 None:intergenic 30.0%
!! TTAATGGGGTATTGGTAAAA+AGG + Chr1:11667881-11667900 MsG0180000822.01.T01:intron 30.0%
!!! AATTTGTTTTGTTCAGGCAT+CGG + Chr1:11668900-11668919 MsG0180000822.01.T01:intron 30.0%
!!! AGAGTTTTCTTTTTTGGCAA+CGG - Chr1:11667262-11667281 None:intergenic 30.0%
!!! GCTATCAATTTGTTTTGTTC+AGG + Chr1:11668894-11668913 MsG0180000822.01.T01:intron 30.0%
AATTATGAGAAGGATGACGA+TGG + Chr1:11667838-11667857 MsG0180000822.01.T01:intron 35.0%
AGAGTTAATGCTATTGCAAG+AGG + Chr1:11668948-11668967 MsG0180000822.01.T01:CDS 35.0%
AGGATTACCACTCAAAATCA+AGG - Chr1:11668338-11668357 None:intergenic 35.0%
ATCCTCTAATGATTGAACCA+TGG + Chr1:11669469-11669488 MsG0180000822.01.T01:three_prime_UTR 35.0%
ATTATGAGAAGGATGACGAT+GGG + Chr1:11667839-11667858 MsG0180000822.01.T01:intron 35.0%
CAGAGAAATAGAGGACATAA+TGG + Chr1:11669531-11669550 MsG0180000822.01.T01:three_prime_UTR 35.0%
CCCGAAGAATTCTTTAATAG+AGG + Chr1:11667446-11667465 MsG0180000822.01.T01:intron 35.0%
CTAGCTAATTCTCTTCTCAA+GGG + Chr1:11667984-11668003 MsG0180000822.01.T01:intron 35.0%
CTGTTAACTCAAGATGATCT+TGG - Chr1:11666902-11666921 None:intergenic 35.0%
CTTGGTTAATTTATGGCTCA+TGG + Chr1:11667616-11667635 MsG0180000822.01.T01:intron 35.0%
GAAATGGAACCCACATAAAA+TGG - Chr1:11667547-11667566 None:intergenic 35.0%
GACGAATCATGTCATATCTA+TGG - Chr1:11669324-11669343 None:intergenic 35.0%
GCAATAGCATTAACTCTGAT+CGG - Chr1:11668945-11668964 None:intergenic 35.0%
GGAACAACCATATATGTTGA+TGG + Chr1:11669128-11669147 MsG0180000822.01.T01:three_prime_UTR 35.0%
GGAACTTCAAGTACTAGTAT+TGG - Chr1:11668626-11668645 None:intergenic 35.0%
GGAAGATGAATTCCCATTAT+CGG + Chr1:11668980-11668999 MsG0180000822.01.T01:CDS 35.0%
GTCATCTATCTAATCAGTGA+TGG + Chr1:11669089-11669108 MsG0180000822.01.T01:three_prime_UTR 35.0%
GTGGAAGAACAATCACATAA+AGG - Chr1:11669186-11669205 None:intergenic 35.0%
TACCATGGTTCAATCATTAG+AGG - Chr1:11669474-11669493 None:intergenic 35.0%
TCTATCCCTAACAAACTGAA+TGG - Chr1:11669664-11669683 None:intergenic 35.0%
TGGTAATCCTCTACTGTAAT+AGG + Chr1:11668348-11668367 MsG0180000822.01.T01:intron 35.0%
TGTTGGGTATACTTGTCATT+TGG + Chr1:11667666-11667685 MsG0180000822.01.T01:intron 35.0%
TTCGTGTATTTGAGAGTCAT+AGG + Chr1:11669559-11669578 MsG0180000822.01.T01:three_prime_UTR 35.0%
! AGATAAATTTTATGGCGGCA+TGG + Chr1:11666946-11666965 MsG0180000822.01.T01:CDS 35.0%
! ATAATGGGAATTCATCTTCC+AGG - Chr1:11668980-11668999 None:intergenic 35.0%
! GGATTCTATTCATCTGAAAC+AGG + Chr1:11666870-11666889 MsG0180000822.01.T01:CDS 35.0%
! TATGTCCCACCATTTTATGT+GGG + Chr1:11667535-11667554 MsG0180000822.01.T01:intron 35.0%
! TGTGTACATCTAAAGCCTAA+AGG - Chr1:11669386-11669405 None:intergenic 35.0%
! TTATGTCCCACCATTTTATG+TGG + Chr1:11667534-11667553 MsG0180000822.01.T01:intron 35.0%
! TTGGTTATAAGAATGATGGG+TGG + Chr1:11669614-11669633 MsG0180000822.01.T01:three_prime_UTR 35.0%
!! TCAAGTACTAGTATTGGCTT+CGG - Chr1:11668620-11668639 None:intergenic 35.0%
!! TTATAAGAATGATGGGTGGA+AGG + Chr1:11669618-11669637 MsG0180000822.01.T01:three_prime_UTR 35.0%
!!! AGTTTTCTTTTTTGGCAACG+GGG - Chr1:11667260-11667279 None:intergenic 35.0%
!!! GAGTTTTCTTTTTTGGCAAC+GGG - Chr1:11667261-11667280 None:intergenic 35.0%
AACGAATAGAGTCGTCAGTT+AGG - Chr1:11668149-11668168 None:intergenic 40.0%
AATAAACAGTGCACTCTAGG+AGG - Chr1:11668181-11668200 None:intergenic 40.0%
AGATGAATTCCCATTATCGG+TGG + Chr1:11668983-11669002 MsG0180000822.01.T01:CDS 40.0%
AGCAACACTCACTCTCTAAT+TGG - Chr1:11667598-11667617 None:intergenic 40.0%
AGTAACTGAGATGGTTGCAA+GGG - Chr1:11668016-11668035 None:intergenic 40.0%
ATATAGTGTCCGGGTTAATG+GGG + Chr1:11667867-11667886 MsG0180000822.01.T01:intron 40.0%
ATGGAACCCACATAAAATGG+TGG - Chr1:11667544-11667563 None:intergenic 40.0%
CAAACACTCGCTCTCTTATT+GGG + Chr1:11667502-11667521 MsG0180000822.01.T01:intron 40.0%
CTATAACAGAGAAACTGCAC+AGG - Chr1:11668720-11668739 None:intergenic 40.0%
CTGTGCTCCATCAACATATA+TGG - Chr1:11669138-11669157 None:intergenic 40.0%
GAGAATAAACAGTGCACTCT+AGG - Chr1:11668184-11668203 None:intergenic 40.0%
GAGTTGCATCGTTGTAACAA+AGG + Chr1:11668245-11668264 MsG0180000822.01.T01:intron 40.0%
GATATAGTGTCCGGGTTAAT+GGG + Chr1:11667866-11667885 MsG0180000822.01.T01:intron 40.0%
GATGAATTCCCATTATCGGT+GGG + Chr1:11668984-11669003 MsG0180000822.01.T01:CDS 40.0%
GCAACACTCACTCTCTAATT+GGG - Chr1:11667597-11667616 None:intergenic 40.0%
GCTAGCTAATTCTCTTCTCA+AGG + Chr1:11667983-11668002 MsG0180000822.01.T01:intron 40.0%
GGAGAGTTCACAATAGAGAT+AGG - Chr1:11668053-11668072 None:intergenic 40.0%
GGGTTCCATTTCCAAAATGT+AGG + Chr1:11667555-11667574 MsG0180000822.01.T01:intron 40.0%
TAGTAACTGAGATGGTTGCA+AGG - Chr1:11668017-11668036 None:intergenic 40.0%
TATTAAAGGCTGTTGGCCAA+AGG + Chr1:11666973-11666992 MsG0180000822.01.T01:CDS 40.0%
TCAAACACTCGCTCTCTTAT+TGG + Chr1:11667501-11667520 MsG0180000822.01.T01:intron 40.0%
TCAAGGAAGTAATAAGGTGC+AGG - Chr1:11668321-11668340 None:intergenic 40.0%
TGATATAGTGTCCGGGTTAA+TGG + Chr1:11667865-11667884 MsG0180000822.01.T01:intron 40.0%
TGGAACCCACATAAAATGGT+GGG - Chr1:11667543-11667562 None:intergenic 40.0%
TTACCAATACCCCATTAACC+CGG - Chr1:11667879-11667898 None:intergenic 40.0%
! ATTAGAGAGTGAGTGTTGCT+TGG + Chr1:11667598-11667617 MsG0180000822.01.T01:intron 40.0%
! CTGTAATTTTATCCTGCGGT+TGG + Chr1:11668665-11668684 MsG0180000822.01.T01:intron 40.0%
! GATAATTAACGGACAAGGTG+CGG - Chr1:11668218-11668237 None:intergenic 40.0%
! GGCGGCATGGTTTTTATTAA+AGG + Chr1:11666959-11666978 MsG0180000822.01.T01:CDS 40.0%
! TCAATGTGGGTCCTACATTT+TGG - Chr1:11667569-11667588 None:intergenic 40.0%
!! ACTAGTATTGGCTTCGGAAT+AGG - Chr1:11668614-11668633 None:intergenic 40.0%
!! CGATAATGGGTTCAGAAAGA+GGG + Chr1:11667039-11667058 MsG0180000822.01.T01:CDS 40.0%
!! TCGATAATGGGTTCAGAAAG+AGG + Chr1:11667038-11667057 MsG0180000822.01.T01:CDS 40.0%
!! TGGGTCCTACATTTTGGAAA+TGG - Chr1:11667563-11667582 None:intergenic 40.0%
!! TTTTAGGAGTTGTCTCTGCA+TGG + Chr1:11667747-11667766 MsG0180000822.01.T01:intron 40.0%
AAGGATGCGGAACTTCAACA+AGG + Chr1:11666992-11667011 MsG0180000822.01.T01:CDS 45.0%
AATTCCCATTATCGGTGGGA+AGG + Chr1:11668988-11669007 MsG0180000822.01.T01:CDS 45.0%
ACATCAAGCCATCTCTCAAG+TGG - Chr1:11669047-11669066 None:intergenic 45.0%
AGGATGCGGAACTTCAACAA+GGG + Chr1:11666993-11667012 MsG0180000822.01.T01:CDS 45.0%
ATAGTGACTCTATCCCGAAG+TGG + Chr1:11668291-11668310 MsG0180000822.01.T01:intron 45.0%
ATGGAGCACAGTCTATAACC+AGG + Chr1:11669147-11669166 MsG0180000822.01.T01:three_prime_UTR 45.0%
ATGGCTGTGATATCGATGTG+TGG + Chr1:11668559-11668578 MsG0180000822.01.T01:intron 45.0%
ATTATCGGTGGGAAGGGAAA+GGG + Chr1:11668995-11669014 MsG0180000822.01.T01:CDS 45.0%
ATTCCCATTATCGGTGGGAA+GGG + Chr1:11668989-11669008 MsG0180000822.01.T01:CDS 45.0%
ATTCTACACACCTCTCTTCC+AGG - Chr1:11669504-11669523 None:intergenic 45.0%
CACATAAAGGAACGCATCCT+AGG - Chr1:11669173-11669192 None:intergenic 45.0%
CATTGTTTGCCTGTGCCTTT+AGG + Chr1:11669368-11669387 MsG0180000822.01.T01:three_prime_UTR 45.0%
CTGGAGTTCAGCAGTTAGTT+CGG + Chr1:11667099-11667118 MsG0180000822.01.T01:CDS 45.0%
GATATGACTAATCCAACCGC+AGG - Chr1:11668680-11668699 None:intergenic 45.0%
GGAATTCATCTTCCAGGTGA+AGG - Chr1:11668974-11668993 None:intergenic 45.0%
TAAGAGAGCGAGTGTTTGAG+AGG - Chr1:11667500-11667519 None:intergenic 45.0%
TGAGAGTCATAGGAGAGAAG+TGG + Chr1:11669569-11669588 MsG0180000822.01.T01:three_prime_UTR 45.0%
TGGAGTTCAGCAGTTAGTTC+GGG + Chr1:11667100-11667119 MsG0180000822.01.T01:CDS 45.0%
TGTTGAAGTTCCGCATCCTT+TGG - Chr1:11666992-11667011 None:intergenic 45.0%
TTCTACACACCTCTCTTCCA+GGG - Chr1:11669503-11669522 None:intergenic 45.0%
TTTCCCTTCCCACCGATAAT+GGG - Chr1:11668995-11669014 None:intergenic 45.0%
! CACAGCGAGGAACTTTTCAA+AGG + Chr1:11669203-11669222 MsG0180000822.01.T01:three_prime_UTR 45.0%
! CATCTAAAGCCTAAAGGCAC+AGG - Chr1:11669380-11669399 None:intergenic 45.0%
! CTAAAGGCACAGGCAAACAA+TGG - Chr1:11669370-11669389 None:intergenic 45.0%
! CTTTGAAAAGTTCCTCGCTG+TGG - Chr1:11669205-11669224 None:intergenic 45.0%
! TCAGAAAGAGGGCTTTATCC+AGG + Chr1:11667050-11667069 MsG0180000822.01.T01:CDS 45.0%
!! ATGGGCACTGATATAGTGTC+CGG + Chr1:11667857-11667876 MsG0180000822.01.T01:intron 45.0%
!!! TTTTGTTCAGGCATCGGCTA+TGG + Chr1:11668906-11668925 MsG0180000822.01.T01:intron 45.0%
AAGGGAAAGGGCAGAGAAGT+TGG + Chr1:11669007-11669026 MsG0180000822.01.T01:CDS 50.0%
AAGGTGCAGGAAAGCCACTT+CGG - Chr1:11668308-11668327 None:intergenic 50.0%
ATGCGGAACTTCAACAAGGG+TGG + Chr1:11666996-11667015 MsG0180000822.01.T01:CDS 50.0%
CACAGTCTATAACCAGGCCT+AGG + Chr1:11669153-11669172 MsG0180000822.01.T01:three_prime_UTR 50.0%
CAGAGAAACTGCACAGGACA+TGG - Chr1:11668714-11668733 None:intergenic 50.0%
CATTATCGGTGGGAAGGGAA+AGG + Chr1:11668994-11669013 MsG0180000822.01.T01:CDS 50.0%
CTTCCAGGGTCCTAATACCA+TGG - Chr1:11669489-11669508 None:intergenic 50.0%
CTTTCCCTTCCCACCGATAA+TGG - Chr1:11668996-11669015 None:intergenic 50.0%
GAACCATGGTATTAGGACCC+TGG + Chr1:11669483-11669502 MsG0180000822.01.T01:three_prime_UTR 50.0%
GATGGGTCATGCTACATGAC+AGG + Chr1:11669107-11669126 MsG0180000822.01.T01:three_prime_UTR 50.0%
GTATTAGGACCCTGGAAGAG+AGG + Chr1:11669491-11669510 MsG0180000822.01.T01:three_prime_UTR 50.0%
GTGATTGTTCTTCCACAGCG+AGG + Chr1:11669190-11669209 MsG0180000822.01.T01:three_prime_UTR 50.0%
TAACTGCTGAACTCCAGCCA+AGG - Chr1:11667096-11667115 None:intergenic 50.0%
TATTGCAAGAGGCCTTCACC+TGG + Chr1:11668959-11668978 MsG0180000822.01.T01:CDS 50.0%
TGCGGAACTTCAACAAGGGT+GGG + Chr1:11666997-11667016 MsG0180000822.01.T01:CDS 50.0%
TGTCCGGGTTAATGGGGTAT+TGG + Chr1:11667873-11667892 MsG0180000822.01.T01:intron 50.0%
! AAACAGTGCACTCTAGGAGG+AGG - Chr1:11668178-11668197 None:intergenic 50.0%
!! GGCAGAGAAGTTGGTGAAAG+AGG + Chr1:11669016-11669035 MsG0180000822.01.T01:exon 50.0%
!! TGGGCACTGATATAGTGTCC+GGG + Chr1:11667858-11667877 MsG0180000822.01.T01:intron 50.0%
AAAGGAACGCATCCTAGGCC+TGG - Chr1:11669168-11669187 None:intergenic 55.0%
AGGCAGCACCACTTGAGAGA+TGG + Chr1:11669036-11669055 MsG0180000822.01.T01:three_prime_UTR 55.0%
AGGCTGTTGGCCAAAGGATG+CGG + Chr1:11666979-11666998 MsG0180000822.01.T01:CDS 55.0%
AGGTGCAGGAAAGCCACTTC+GGG - Chr1:11668307-11668326 None:intergenic 55.0%
TGCTGCATATGCCTCAGCCT+TGG + Chr1:11667076-11667095 MsG0180000822.01.T01:CDS 55.0%
! AGTGCACTCTAGGAGGAGGA+GGG - Chr1:11668174-11668193 None:intergenic 55.0%
!! CAGGCATCGGCTATGGAGAT+AGG + Chr1:11668913-11668932 MsG0180000822.01.T01:intron 55.0%
CTGAACTCCAGCCAAGGCTG+AGG - Chr1:11667090-11667109 None:intergenic 60.0%
GAGGCATATGCAGCAGCTCC+TGG - Chr1:11667071-11667090 None:intergenic 60.0%
GCATATGCCTCAGCCTTGGC+TGG + Chr1:11667080-11667099 MsG0180000822.01.T01:CDS 60.0%
! CAGTGCACTCTAGGAGGAGG+AGG - Chr1:11668175-11668194 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 11666867 11669775 11666867 ID=MsG0180000822.01;Name=MsG0180000822.01
Chr1 mRNA 11666867 11669775 11666867 ID=MsG0180000822.01.T01;Parent=MsG0180000822.01;Name=MsG0180000822.01.T01;_AED=0.38;_eAED=0.38;_QI=0|1|0.5|1|0|0|2|743|123
Chr1 exon 11668916 11669775 11668916 ID=MsG0180000822.01.T01:exon:654;Parent=MsG0180000822.01.T01
Chr1 exon 11666867 11667121 11666867 ID=MsG0180000822.01.T01:exon:653;Parent=MsG0180000822.01.T01
Chr1 CDS 11666867 11667121 11666867 ID=MsG0180000822.01.T01:cds;Parent=MsG0180000822.01.T01
Chr1 CDS 11668916 11669032 11668916 ID=MsG0180000822.01.T01:cds;Parent=MsG0180000822.01.T01
Chr1 three_prime_UTR 11669033 11669775 11669033 ID=MsG0180000822.01.T01:three_prime_utr;Parent=MsG0180000822.01.T01
Gene Sequence

>MsG0180000822.01.T01

TTGGGATTCTATTCATCTGAAACAGGAAAGATCCAAGATCATCTTGAGTTAACAGAGAGTGAGTACAAAAAAATAGTGAAGATAAATTTTATGGCGGCATGGTTTTTATTAAAGGCTGTTGGCCAAAGGATGCGGAACTTCAACAAGGGTGGGTCCATTGTATTTATAACGTCGATAATGGGTTCAGAAAGAGGGCTTTATCCAGGAGCTGCTGCATATGCCTCAGCCTTGGCTGGAGTTCAGCAGTTAGTTCGGGCATCGGCTATGGAGATAGGTAAGTACCGATCAGAGTTAATGCTATTGCAAGAGGCCTTCACCTGGAAGATGAATTCCCATTATCGGTGGGAAGGGAAAGGGCAGAGAAGTTGGTGA

Protein sequence

>MsG0180000822.01.T01

LGFYSSETGKIQDHLELTESEYKKIVKINFMAAWFLLKAVGQRMRNFNKGGSIVFITSIMGSERGLYPGAAAYASALAGVQQLVRASAMEIGKYRSELMLLQEAFTWKMNSHYRWEGKGQRSW*