AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025329.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025329.01.T01 MTR_5g026550 80.208 96 7 1 176 271 45 128 2.06e-44 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025329.01.T01 AT5G61230 65.625 96 21 1 175 270 44 127 2.36e-32 118
MsG0580025329.01.T01 AT5G07840 62.887 97 24 1 175 271 46 130 6.29e-31 114

Find 107 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACAGTCGTGCAATTTA+AGG 0.163304 5:+16990543 MsG0580025329.01.T01:three_prime_UTR
TTATAATTGGTAATCGAATA+AGG 0.191622 5:-16987770 None:intergenic
AAGATTGGATTCATTATAAT+TGG 0.192827 5:-16987783 None:intergenic
CATAGTAAGTTGTTTATTTC+GGG 0.195209 5:-16990390 None:intergenic
TACTAATATGGAAGTCTATA+TGG 0.233043 5:-16990034 None:intergenic
GCATAGTAAGTTGTTTATTT+CGG 0.242323 5:-16990391 None:intergenic
AACTTACTATGCATATAGTA+TGG 0.245986 5:+16990402 MsG0580025329.01.T01:three_prime_UTR
TCCTCTCTTTAGCTGCAATA+TGG 0.279082 5:-16990132 None:intergenic
TCCCTTTGCACCTTATTGTT+TGG 0.291952 5:+16987845 MsG0580025329.01.T01:CDS
GGGGTCACGCCTTTAGATTT+TGG 0.294756 5:-16989897 None:intergenic
CGAATAAGGGTAAAGGAATT+GGG 0.295937 5:-16987756 None:intergenic
TCGAATAAGGGTAAAGGAAT+TGG 0.310059 5:-16987757 None:intergenic
CCTAGTTCTGGCATCAATAT+TGG 0.312139 5:-16989982 None:intergenic
CGAAGGAGGTTGTTGAGGCC+TGG 0.313233 5:+16988190 MsG0580025329.01.T01:CDS
TTGCAGCTAAAGAGAGGAAT+AGG 0.325717 5:+16990137 MsG0580025329.01.T01:CDS
GAAGGAGGTTGTTGAGGCCT+GGG 0.347758 5:+16988191 MsG0580025329.01.T01:CDS
GAATGATTGGCCAAACAATA+AGG 0.358828 5:-16987855 None:intergenic
GACAGATAGATATACTAATA+TGG 0.360153 5:-16990046 None:intergenic
GTGTGGAATTACCGTTGTTA+TGG 0.364841 5:+16990498 MsG0580025329.01.T01:three_prime_UTR
ATTACTGCCCAGGACTTGAA+TGG 0.394427 5:+16990238 MsG0580025329.01.T01:CDS
AGATTGTGAACAACGAAGAT+TGG 0.403102 5:-16987798 None:intergenic
TCATTGATTTGATTGATGTT+CGG 0.411352 5:+16990344 MsG0580025329.01.T01:three_prime_UTR
GTATATGAATGTTTATTATG+AGG 0.414750 5:+16988365 MsG0580025329.01.T01:CDS
AGGACTTTGTCGCAACGAAT+TGG 0.418004 5:-16988164 None:intergenic
ACGAGTCTGGCGGGAATGAT+TGG 0.425248 5:-16987868 None:intergenic
CCAATATTGATGCCAGAACT+AGG 0.426030 5:+16989982 MsG0580025329.01.T01:CDS
TAGGGATGCTGTGAAATTCT+TGG 0.430272 5:+16990156 MsG0580025329.01.T01:CDS
GTATTATTGTTTGAATATGT+TGG 0.431546 5:+16990428 MsG0580025329.01.T01:three_prime_UTR
TGTGAGAGAAGACATGCTTC+AGG 0.432571 5:+16988136 MsG0580025329.01.T01:intron
TATATGAATGTTTATTATGA+GGG 0.440536 5:+16988366 MsG0580025329.01.T01:CDS
AGGAATTGGGGAAAAGGAAA+AGG 0.442944 5:-16987743 None:intergenic
ACGAAGAGAATTAACGAGTC+TGG 0.443842 5:-16987881 None:intergenic
AGCCACAAGCACCCTAGTTC+TGG 0.448987 5:-16989994 None:intergenic
TATAATTGGTAATCGAATAA+GGG 0.450887 5:-16987769 None:intergenic
TCATAGGCCCATTCAAGTCC+TGG 0.450896 5:-16990246 None:intergenic
GGGTAAAGGAATTGGGGAAA+AGG 0.461554 5:-16987749 None:intergenic
AAGTCTCTTCATTTCCTCAT+AGG 0.467730 5:-16990262 None:intergenic
ACTAATATGGAAGTCTATAT+GGG 0.469326 5:-16990033 None:intergenic
TTATGTTGGACAGTGGGGCT+TGG 0.473038 5:+16988995 MsG0580025329.01.T01:CDS
GGAATTGGGGAAAAGGAAAA+GGG 0.481962 5:-16987742 None:intergenic
TTCGACAGCAAGAATTATCT+CGG 0.489219 5:+16990283 MsG0580025329.01.T01:three_prime_UTR
CTCCACCTTGCTGCCGAAGG+TGG 0.490968 5:+16989921 MsG0580025329.01.T01:CDS
GCCAAACAATAAGGTGCAAA+GGG 0.497494 5:-16987846 None:intergenic
CACTCCGAGATGACCACCTT+CGG 0.497622 5:-16989934 None:intergenic
GCTGCCGAAGGTGGTCATCT+CGG 0.507384 5:+16989930 MsG0580025329.01.T01:CDS
TGCACATTATGTTGGACAGT+GGG 0.510070 5:+16988989 MsG0580025329.01.T01:CDS
TTACTGCCCAGGACTTGAAT+GGG 0.512016 5:+16990239 MsG0580025329.01.T01:CDS
GTGAAATTCTTGGTAGAGAA+TGG 0.513179 5:+16990166 MsG0580025329.01.T01:CDS
TCGTGCAATTTAAGGTGTCT+TGG 0.513472 5:+16990551 MsG0580025329.01.T01:three_prime_UTR
CAATCAGTTGCACATTATGT+TGG 0.514699 5:+16988981 MsG0580025329.01.T01:CDS
CTTCGGCAGCAAGGTGGAGA+GGG 0.515210 5:-16989917 None:intergenic
TGCAGCTAAAGAGAGGAATA+GGG 0.519744 5:+16990138 MsG0580025329.01.T01:CDS
AGAGAATTAACGAGTCTGGC+GGG 0.523455 5:-16987877 None:intergenic
TATGTGTAATCATTTATTCA+CGG 0.528623 5:+16990476 MsG0580025329.01.T01:three_prime_UTR
TATTGTTTGAATATGTTGGT+CGG 0.528949 5:+16990432 MsG0580025329.01.T01:three_prime_UTR
TGGTAATCGAATAAGGGTAA+AGG 0.530609 5:-16987763 None:intergenic
AGGACTTGAATGGGCCTATG+AGG 0.531270 5:+16990248 MsG0580025329.01.T01:CDS
AACTTGCAATTGAAAGTCGT+TGG 0.531573 5:+16988936 MsG0580025329.01.T01:CDS
CCTCTCCACCTTGCTGCCGA+AGG 0.532516 5:+16989918 MsG0580025329.01.T01:CDS
AAAGCTTCTCAACGAAGGAA+TGG 0.535311 5:+16989851 MsG0580025329.01.T01:CDS
AGGTGCAAAGGGATTCAAGC+CGG 0.536439 5:-16987835 None:intergenic
CCTCCTCTTCATTACTGCCC+AGG 0.539604 5:+16990228 MsG0580025329.01.T01:CDS
AGGTGGTCATCTCGGAGTGA+TGG 0.540638 5:+16989938 MsG0580025329.01.T01:CDS
CTTCATGTTTATGCAAGGAA+AGG 0.547906 5:+16988243 MsG0580025329.01.T01:CDS
GGCCAAACAATAAGGTGCAA+AGG 0.552499 5:-16987847 None:intergenic
TGCCAGAACTAGGGTGCTTG+TGG 0.552733 5:+16989992 MsG0580025329.01.T01:CDS
GCATGGGGCCCAAAATCTAA+AGG 0.559905 5:+16989888 MsG0580025329.01.T01:CDS
CATAGGCCCATTCAAGTCCT+GGG 0.560704 5:-16990245 None:intergenic
CCTTCGGCAGCAAGGTGGAG+AGG 0.564920 5:-16989918 None:intergenic
ACTTACTATGCATATAGTAT+GGG 0.571177 5:+16990403 MsG0580025329.01.T01:three_prime_UTR
AAGGAAAGGTGATATTAAGC+TGG 0.572436 5:+16988257 MsG0580025329.01.T01:CDS
GAATAAGGGTAAAGGAATTG+GGG 0.573949 5:-16987755 None:intergenic
TGGGGTGATACTGATGATAG+AGG 0.582733 5:+16988210 MsG0580025329.01.T01:CDS
TGGATGTTAATGTGACTGCA+TGG 0.583622 5:+16989871 MsG0580025329.01.T01:CDS
GGTACAGTTAAACATTGGAA+AGG 0.584559 5:+16988957 MsG0580025329.01.T01:CDS
AAGGAGGTTGTTGAGGCCTG+GGG 0.587579 5:+16988192 MsG0580025329.01.T01:CDS
CCTCACTTCATGTTTATGCA+AGG 0.587941 5:+16988238 MsG0580025329.01.T01:CDS
CTTCGCGAAGGAGGTTGTTG+AGG 0.590897 5:+16988185 MsG0580025329.01.T01:CDS
TCGACAGCAAGAATTATCTC+GGG 0.593381 5:+16990284 MsG0580025329.01.T01:three_prime_UTR
CAATATTGATGCCAGAACTA+GGG 0.593402 5:+16989983 MsG0580025329.01.T01:CDS
GGTGCAAAGGGATTCAAGCC+GGG 0.593453 5:-16987834 None:intergenic
GTGATACTGATGATAGAGGT+TGG 0.595901 5:+16988214 MsG0580025329.01.T01:CDS
TCCATATTGCAGCTAAAGAG+AGG 0.596526 5:+16990131 MsG0580025329.01.T01:CDS
GTAATCATTTATTCACGGTG+TGG 0.607510 5:+16990481 MsG0580025329.01.T01:three_prime_UTR
GATGACCACCTTCGGCAGCA+AGG 0.610444 5:-16989926 None:intergenic
TTCGGCAGCAAGGTGGAGAG+GGG 0.614770 5:-16989916 None:intergenic
CTCAACAACCTCCTTCGCGA+AGG 0.617083 5:-16988184 None:intergenic
GACAAAGTCCTTCGCGAAGG+AGG 0.622537 5:+16988176 MsG0580025329.01.T01:CDS
TCTATCATCAGTATCACCCC+AGG 0.626764 5:-16988208 None:intergenic
TCGTTGGTACAGTTAAACAT+TGG 0.628743 5:+16988952 MsG0580025329.01.T01:CDS
AGAATGGAGCATTCTTGCCA+CGG 0.632487 5:+16990182 MsG0580025329.01.T01:CDS
AGTCCTGGGCAGTAATGAAG+AGG 0.632969 5:-16990231 None:intergenic
GAGAAGACATGCTTCAGGAG+AGG 0.635852 5:+16988141 MsG0580025329.01.T01:intron
TTGCACATTATGTTGGACAG+TGG 0.639570 5:+16988988 MsG0580025329.01.T01:CDS
CCTGGGCAGTAATGAAGAGG+AGG 0.640191 5:-16990228 None:intergenic
TCTGCTATCATTGATATCCG+TGG 0.641687 5:-16990199 None:intergenic
TCTTTAGCTGCAATATGGAG+CGG 0.641697 5:-16990127 None:intergenic
GGATGTTAATGTGACTGCAT+GGG 0.642233 5:+16989872 MsG0580025329.01.T01:CDS
GCACATTATGTTGGACAGTG+GGG 0.643686 5:+16988990 MsG0580025329.01.T01:CDS
TGCGACAAAGTCCTTCGCGA+AGG 0.643930 5:+16988173 MsG0580025329.01.T01:CDS
CCTTGCATAAACATGAAGTG+AGG 0.647744 5:-16988238 None:intergenic
AAGAGAATTAACGAGTCTGG+CGG 0.655067 5:-16987878 None:intergenic
GATGTTAATGTGACTGCATG+GGG 0.662007 5:+16989873 MsG0580025329.01.T01:CDS
GGAAAAGGAAAAGGGAACGA+AGG 0.673688 5:-16987734 None:intergenic
ACAGCAAGAATTATCTCGGG+AGG 0.678526 5:+16990287 MsG0580025329.01.T01:three_prime_UTR
GACCACCTTCGGCAGCAAGG+TGG 0.692091 5:-16989923 None:intergenic
ATGGATGAACTGCTTGAGCG+TGG 0.700290 5:+16989957 MsG0580025329.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAAAAATCAAAATT+TGG - Chr5:16990078-16990097 None:intergenic 10.0%
!! TATATGAATGTTTATTATGA+GGG + Chr5:16988366-16988385 MsG0580025329.01.T01:CDS 15.0%
!! AACCAAATAAATCTAAGTAA+AGG - Chr5:16988453-16988472 None:intergenic 20.0%
!! AAGATTGGATTCATTATAAT+TGG - Chr5:16987786-16987805 None:intergenic 20.0%
!! ACCAAATAAATCTAAGTAAA+GGG - Chr5:16988452-16988471 None:intergenic 20.0%
!! ATTTGTCTAATATTCACATA+AGG + Chr5:16988582-16988601 MsG0580025329.01.T01:intron 20.0%
!! GTATATGAATGTTTATTATG+AGG + Chr5:16988365-16988384 MsG0580025329.01.T01:CDS 20.0%
!! GTATTATTGTTTGAATATGT+TGG + Chr5:16990428-16990447 MsG0580025329.01.T01:three_prime_UTR 20.0%
!! TATAATATCATTAGGAGATA+AGG + Chr5:16988620-16988639 MsG0580025329.01.T01:intron 20.0%
!! TATGTGTAATCATTTATTCA+CGG + Chr5:16990476-16990495 MsG0580025329.01.T01:three_prime_UTR 20.0%
!! TTATACTTAAAAATCCTGTT+AGG - Chr5:16989383-16989402 None:intergenic 20.0%
!! TTTCGAAATTAGAAGATAAT+AGG - Chr5:16987914-16987933 None:intergenic 20.0%
!!! AAATTGACTATGTTTTACTT+CGG + Chr5:16988312-16988331 MsG0580025329.01.T01:CDS 20.0%
!!! CCATATTTTATTTTGTAGAT+GGG + Chr5:16988522-16988541 MsG0580025329.01.T01:intron 20.0%
!!! CTTTTTTTACATGATATTGA+AGG - Chr5:16987959-16987978 None:intergenic 20.0%
!!! TATAATTGGTAATCGAATAA+GGG - Chr5:16987772-16987791 None:intergenic 20.0%
!!! TATTAAGGTTTTTCTTTGAA+CGG + Chr5:16988004-16988023 MsG0580025329.01.T01:intron 20.0%
!!! TGATAATTTTCTACTCTTAA+AGG - Chr5:16989771-16989790 None:intergenic 20.0%
!!! TTATAATTGGTAATCGAATA+AGG - Chr5:16987773-16987792 None:intergenic 20.0%
! AAAAAACAAGTCCATAACAA+CGG - Chr5:16990512-16990531 None:intergenic 25.0%
! AACTTACTATGCATATAGTA+TGG + Chr5:16990402-16990421 MsG0580025329.01.T01:three_prime_UTR 25.0%
! AAGATAAATAATGTGCAAGA+AGG + Chr5:16988412-16988431 MsG0580025329.01.T01:intron 25.0%
! AAGTTATGACTAATGAGTTA+AGG + Chr5:16989129-16989148 MsG0580025329.01.T01:intron 25.0%
! AATAAAATATGGCTTTCAGT+AGG - Chr5:16988514-16988533 None:intergenic 25.0%
! ACTAATATGGAAGTCTATAT+GGG - Chr5:16990036-16990055 None:intergenic 25.0%
! ACTTACTATGCATATAGTAT+GGG + Chr5:16990403-16990422 MsG0580025329.01.T01:three_prime_UTR 25.0%
! AGTTATGACTAATGAGTTAA+GGG + Chr5:16989130-16989149 MsG0580025329.01.T01:intron 25.0%
! ATGTATTCTCAAAAACATAG+AGG + Chr5:16988780-16988799 MsG0580025329.01.T01:intron 25.0%
! ATTAACAAACAGTCGTTATT+GGG + Chr5:16989515-16989534 MsG0580025329.01.T01:intron 25.0%
! CATAGTAAGTTGTTTATTTC+GGG - Chr5:16990393-16990412 None:intergenic 25.0%
! CCCATCTACAAAATAAAATA+TGG - Chr5:16988525-16988544 None:intergenic 25.0%
! GACAGATAGATATACTAATA+TGG - Chr5:16990049-16990068 None:intergenic 25.0%
! GATATTGAAGGAAAACAAAT+TGG - Chr5:16987947-16987966 None:intergenic 25.0%
! GCATAGTAAGTTGTTTATTT+CGG - Chr5:16990394-16990413 None:intergenic 25.0%
! TACTAATATGGAAGTCTATA+TGG - Chr5:16990037-16990056 None:intergenic 25.0%
! TATTGTTTGAATATGTTGGT+CGG + Chr5:16990432-16990451 MsG0580025329.01.T01:three_prime_UTR 25.0%
!!! ACACTTATTTTGAGAATCTA+GGG + Chr5:16988042-16988061 MsG0580025329.01.T01:intron 25.0%
!!! ATTTTATTTTGTAGATGGGA+GGG + Chr5:16988526-16988545 MsG0580025329.01.T01:intron 25.0%
!!! GCCATATTTTATTTTGTAGA+TGG + Chr5:16988521-16988540 MsG0580025329.01.T01:intron 25.0%
!!! TACACTTATTTTGAGAATCT+AGG + Chr5:16988041-16988060 MsG0580025329.01.T01:intron 25.0%
!!! TATTTTATTTTGTAGATGGG+AGG + Chr5:16988525-16988544 MsG0580025329.01.T01:intron 25.0%
!!! TCATTGATTTGATTGATGTT+CGG + Chr5:16990344-16990363 MsG0580025329.01.T01:three_prime_UTR 25.0%
!!! TTAGATTTATTTGGTTTGAG+TGG + Chr5:16988457-16988476 MsG0580025329.01.T01:intron 25.0%
!!! TTATAATGTTGTTTCTGAAC+AGG + Chr5:16989824-16989843 MsG0580025329.01.T01:intron 25.0%
AGGTTGAATTTGAATAGTAC+AGG + Chr5:16988843-16988862 MsG0580025329.01.T01:intron 30.0%
ATTATCACACTTGAAGTGTA+AGG + Chr5:16989784-16989803 MsG0580025329.01.T01:intron 30.0%
CATTAACAAACAGTCGTTAT+TGG + Chr5:16989514-16989533 MsG0580025329.01.T01:intron 30.0%
GAAAACAAATTGGAGAGAAA+GGG - Chr5:16987937-16987956 None:intergenic 30.0%
GCCCTTTACTTAGATTTATT+TGG + Chr5:16988448-16988467 MsG0580025329.01.T01:intron 30.0%
GGTTGAATTTGAATAGTACA+GGG + Chr5:16988844-16988863 MsG0580025329.01.T01:intron 30.0%
GTACTATTCAAATTCAACCT+AGG - Chr5:16988843-16988862 None:intergenic 30.0%
TAACTAATTGCAACCATCTA+AGG - Chr5:16989332-16989351 None:intergenic 30.0%
TAATCCAGCTATATGAATTG+AGG + Chr5:16988750-16988769 MsG0580025329.01.T01:intron 30.0%
TGGTGAATTTGTAGAAGTAA+CGG + Chr5:16989164-16989183 MsG0580025329.01.T01:intron 30.0%
TGTCTAATATTCACATAAGG+TGG + Chr5:16988585-16988604 MsG0580025329.01.T01:intron 30.0%
TTAGATGGTTGCAATTAGTT+AGG + Chr5:16989331-16989350 MsG0580025329.01.T01:intron 30.0%
TTATCACACTTGAAGTGTAA+GGG + Chr5:16989785-16989804 MsG0580025329.01.T01:intron 30.0%
TTCTATACAGCTCTTGTAAA+AGG + Chr5:16989406-16989425 MsG0580025329.01.T01:intron 30.0%
! ATTTTGTTCTCCTTAAACCA+GGG + Chr5:16990101-16990120 MsG0580025329.01.T01:intron 30.0%
! GCTATCAATCTAGAGTTATT+TGG - Chr5:16989072-16989091 None:intergenic 30.0%
! GGTCAATTTTCTTGAGATTT+AGG + Chr5:16988662-16988681 MsG0580025329.01.T01:intron 30.0%
! TGTTTTACTTCGGAATTTTG+TGG + Chr5:16988322-16988341 MsG0580025329.01.T01:CDS 30.0%
! TTTTGTAAACACAGCAATGA+AGG - Chr5:16989646-16989665 None:intergenic 30.0%
!! AGATTCAGCGTTTGTTATTA+AGG + Chr5:16987989-16988008 MsG0580025329.01.T01:intron 30.0%
!! ATTTTGAGAATCTAGGGTTT+GGG + Chr5:16988048-16988067 MsG0580025329.01.T01:intron 30.0%
!! TATTTTGAGAATCTAGGGTT+TGG + Chr5:16988047-16988066 MsG0580025329.01.T01:intron 30.0%
!!! GGTTAGTTTCTGCATTTTAT+TGG + Chr5:16988641-16988660 MsG0580025329.01.T01:intron 30.0%
AACTTGCAATTGAAAGTCGT+TGG + Chr5:16988936-16988955 MsG0580025329.01.T01:CDS 35.0%
AAGGAAAGGTGATATTAAGC+TGG + Chr5:16988257-16988276 MsG0580025329.01.T01:CDS 35.0%
AAGTCTCTTCATTTCCTCAT+AGG - Chr5:16990265-16990284 None:intergenic 35.0%
AGATTGTGAACAACGAAGAT+TGG - Chr5:16987801-16987820 None:intergenic 35.0%
CAATATTGATGCCAGAACTA+GGG + Chr5:16989983-16990002 MsG0580025329.01.T01:CDS 35.0%
CAATCAGTTGCACATTATGT+TGG + Chr5:16988981-16989000 MsG0580025329.01.T01:CDS 35.0%
CGAATAAGGGTAAAGGAATT+GGG - Chr5:16987759-16987778 None:intergenic 35.0%
CTTCATGTTTATGCAAGGAA+AGG + Chr5:16988243-16988262 MsG0580025329.01.T01:CDS 35.0%
GAATAAGGGTAAAGGAATTG+GGG - Chr5:16987758-16987777 None:intergenic 35.0%
GGAAAACAAATTGGAGAGAA+AGG - Chr5:16987938-16987957 None:intergenic 35.0%
GGTACAGTTAAACATTGGAA+AGG + Chr5:16988957-16988976 MsG0580025329.01.T01:CDS 35.0%
GGTGAATTTGTAGAAGTAAC+GGG + Chr5:16989165-16989184 MsG0580025329.01.T01:intron 35.0%
GTAAAAAAGCTTCTCAACGA+AGG + Chr5:16989846-16989865 MsG0580025329.01.T01:CDS 35.0%
GTAATCATTTATTCACGGTG+TGG + Chr5:16990481-16990500 MsG0580025329.01.T01:three_prime_UTR 35.0%
GTGAAATTCTTGGTAGAGAA+TGG + Chr5:16990166-16990185 MsG0580025329.01.T01:CDS 35.0%
TACATTTGTAGAGTGTGAAG+TGG + Chr5:16989238-16989257 MsG0580025329.01.T01:intron 35.0%
TCGAATAAGGGTAAAGGAAT+TGG - Chr5:16987760-16987779 None:intergenic 35.0%
TCGTTGGTACAGTTAAACAT+TGG + Chr5:16988952-16988971 MsG0580025329.01.T01:CDS 35.0%
TGGTAATCGAATAAGGGTAA+AGG - Chr5:16987766-16987785 None:intergenic 35.0%
TGTACCTCAATTCATATAGC+TGG - Chr5:16988757-16988776 None:intergenic 35.0%
TGTTACAGTCGTGCAATTTA+AGG + Chr5:16990543-16990562 MsG0580025329.01.T01:three_prime_UTR 35.0%
TTCGACAGCAAGAATTATCT+CGG + Chr5:16990283-16990302 MsG0580025329.01.T01:three_prime_UTR 35.0%
! ATCATCGACTAAAGTAAGCA+AGG - Chr5:16989714-16989733 None:intergenic 35.0%
! ATTGATAGCATAGCATTGAG+AGG + Chr5:16989083-16989102 MsG0580025329.01.T01:intron 35.0%
! GAATGATTGGCCAAACAATA+AGG - Chr5:16987858-16987877 None:intergenic 35.0%
! GATTTTGTTCTCCTTAAACC+AGG + Chr5:16990100-16990119 MsG0580025329.01.T01:intron 35.0%
! GCTTCAGTTATGAGATTTTG+GGG + Chr5:16988479-16988498 MsG0580025329.01.T01:intron 35.0%
! GGCTTCAGTTATGAGATTTT+GGG + Chr5:16988478-16988497 MsG0580025329.01.T01:intron 35.0%
! GTTCACAATCTTCGTGTTTT+CGG + Chr5:16987810-16987829 MsG0580025329.01.T01:CDS 35.0%
! TAAGGTTTTTCTTTGAACGG+AGG + Chr5:16988007-16988026 MsG0580025329.01.T01:intron 35.0%
! TGGCTTCAGTTATGAGATTT+TGG + Chr5:16988477-16988496 MsG0580025329.01.T01:intron 35.0%
! TTGATAGCATAGCATTGAGA+GGG + Chr5:16989084-16989103 MsG0580025329.01.T01:intron 35.0%
!!! GGGAGGGTTTTTTTAACATT+TGG + Chr5:16988542-16988561 MsG0580025329.01.T01:intron 35.0%
AAAGCTTCTCAACGAAGGAA+TGG + Chr5:16989851-16989870 MsG0580025329.01.T01:CDS 40.0%
AAGAGAATTAACGAGTCTGG+CGG - Chr5:16987881-16987900 None:intergenic 40.0%
AATAGTACAGGGCTAAAGAG+GGG + Chr5:16988855-16988874 MsG0580025329.01.T01:intron 40.0%
ACGAAGAGAATTAACGAGTC+TGG - Chr5:16987884-16987903 None:intergenic 40.0%
ACGTAGATGAATCTACTGAG+AGG + Chr5:16988807-16988826 MsG0580025329.01.T01:intron 40.0%
AGGAATTGGGGAAAAGGAAA+AGG - Chr5:16987746-16987765 None:intergenic 40.0%
CAATTTACCGAAGTGATTGC+TGG + Chr5:16989453-16989472 MsG0580025329.01.T01:intron 40.0%
CATAAGACCAGCAATCACTT+CGG - Chr5:16989463-16989482 None:intergenic 40.0%
CCAATATTGATGCCAGAACT+AGG + Chr5:16989982-16990001 MsG0580025329.01.T01:CDS 40.0%
CCTCACTTCATGTTTATGCA+AGG + Chr5:16988238-16988257 MsG0580025329.01.T01:CDS 40.0%
CCTTGCATAAACATGAAGTG+AGG - Chr5:16988241-16988260 None:intergenic 40.0%
CGTAGATGAATCTACTGAGA+GGG + Chr5:16988808-16988827 MsG0580025329.01.T01:intron 40.0%
CTAGTCTACACCTTCTATGT+TGG - Chr5:16989265-16989284 None:intergenic 40.0%
GAATAGTACAGGGCTAAAGA+GGG + Chr5:16988854-16988873 MsG0580025329.01.T01:intron 40.0%
GATGTTAATGTGACTGCATG+GGG + Chr5:16989873-16989892 MsG0580025329.01.T01:CDS 40.0%
GCCAAACAATAAGGTGCAAA+GGG - Chr5:16987849-16987868 None:intergenic 40.0%
GGAATTGGGGAAAAGGAAAA+GGG - Chr5:16987745-16987764 None:intergenic 40.0%
GGATGTTAATGTGACTGCAT+GGG + Chr5:16989872-16989891 MsG0580025329.01.T01:CDS 40.0%
GTCGATGATTCATGAACTGT+TGG + Chr5:16989725-16989744 MsG0580025329.01.T01:intron 40.0%
GTGATACTGATGATAGAGGT+TGG + Chr5:16988214-16988233 MsG0580025329.01.T01:CDS 40.0%
GTGTGGAATTACCGTTGTTA+TGG + Chr5:16990498-16990517 MsG0580025329.01.T01:three_prime_UTR 40.0%
GTTACGCAGTATTGTTCACA+CGG + Chr5:16989356-16989375 MsG0580025329.01.T01:intron 40.0%
TAATGAGTTAAGGGTGACCA+GGG + Chr5:16989139-16989158 MsG0580025329.01.T01:intron 40.0%
TAGGGATGCTGTGAAATTCT+TGG + Chr5:16990156-16990175 MsG0580025329.01.T01:CDS 40.0%
TCCATATTGCAGCTAAAGAG+AGG + Chr5:16990131-16990150 MsG0580025329.01.T01:CDS 40.0%
TCCCTTTGCACCTTATTGTT+TGG + Chr5:16987845-16987864 MsG0580025329.01.T01:CDS 40.0%
TCCTCTCTTTAGCTGCAATA+TGG - Chr5:16990135-16990154 None:intergenic 40.0%
TCGACAGCAAGAATTATCTC+GGG + Chr5:16990284-16990303 MsG0580025329.01.T01:three_prime_UTR 40.0%
TCTGCTATCATTGATATCCG+TGG - Chr5:16990202-16990221 None:intergenic 40.0%
TCTTTAGCTGCAATATGGAG+CGG - Chr5:16990130-16990149 None:intergenic 40.0%
TGAATAGTACAGGGCTAAAG+AGG + Chr5:16988853-16988872 MsG0580025329.01.T01:intron 40.0%
TGCACATTATGTTGGACAGT+GGG + Chr5:16988989-16989008 MsG0580025329.01.T01:CDS 40.0%
TGCAGCTAAAGAGAGGAATA+GGG + Chr5:16990138-16990157 MsG0580025329.01.T01:CDS 40.0%
TGGATGTTAATGTGACTGCA+TGG + Chr5:16989871-16989890 MsG0580025329.01.T01:CDS 40.0%
TTGCACATTATGTTGGACAG+TGG + Chr5:16988988-16989007 MsG0580025329.01.T01:CDS 40.0%
TTGCAGCTAAAGAGAGGAAT+AGG + Chr5:16990137-16990156 MsG0580025329.01.T01:CDS 40.0%
! AAAGGTGCAAGGAATGGTTA+TGG + Chr5:16989424-16989443 MsG0580025329.01.T01:intron 40.0%
! AAGTTGGTTGCAAGCATCAA+CGG - Chr5:16989563-16989582 None:intergenic 40.0%
! ACACAGCAATGAAGGTGTAA+AGG - Chr5:16989638-16989657 None:intergenic 40.0%
! ATTTAGCTCCCAACATGCAT+CGG - Chr5:16989598-16989617 None:intergenic 40.0%
! CACAGCAATGAAGGTGTAAA+GGG - Chr5:16989637-16989656 None:intergenic 40.0%
! CATAGAAGGTGTAGACTAGA+TGG + Chr5:16989266-16989285 MsG0580025329.01.T01:intron 40.0%
! CTTGTAAAAGGTGCAAGGAA+TGG + Chr5:16989418-16989437 MsG0580025329.01.T01:intron 40.0%
! GATGACAAGTTTGTTTGACG+AGG + Chr5:16989288-16989307 MsG0580025329.01.T01:intron 40.0%
! TCGTGCAATTTAAGGTGTCT+TGG + Chr5:16990551-16990570 MsG0580025329.01.T01:three_prime_UTR 40.0%
! TGACTTGCAAGATCCTTAGA+TGG + Chr5:16989316-16989335 MsG0580025329.01.T01:intron 40.0%
! TGATAGCATAGCATTGAGAG+GGG + Chr5:16989085-16989104 MsG0580025329.01.T01:intron 40.0%
!! CCTAGTTCTGGCATCAATAT+TGG - Chr5:16989985-16990004 None:intergenic 40.0%
AACATGCATCGGGGAATTTG+GGG - Chr5:16989587-16989606 None:intergenic 45.0%
AATGAGTTAAGGGTGACCAG+GGG + Chr5:16989140-16989159 MsG0580025329.01.T01:intron 45.0%
ACAACCAGAACTGTGTCAAC+TGG - Chr5:16989489-16989508 None:intergenic 45.0%
ACAGCAAGAATTATCTCGGG+AGG + Chr5:16990287-16990306 MsG0580025329.01.T01:three_prime_UTR 45.0%
AGAGAATTAACGAGTCTGGC+GGG - Chr5:16987880-16987899 None:intergenic 45.0%
AGGACTTTGTCGCAACGAAT+TGG - Chr5:16988167-16988186 None:intergenic 45.0%
ATTACTGCCCAGGACTTGAA+TGG + Chr5:16990238-16990257 MsG0580025329.01.T01:CDS 45.0%
ATTGTTCACACGGACCTAAC+AGG + Chr5:16989366-16989385 MsG0580025329.01.T01:intron 45.0%
CAAATTCCCCGATGCATGTT+GGG + Chr5:16989587-16989606 MsG0580025329.01.T01:intron 45.0%
CAACATGCATCGGGGAATTT+GGG - Chr5:16989588-16989607 None:intergenic 45.0%
CTAATGAGTTAAGGGTGACC+AGG + Chr5:16989138-16989157 MsG0580025329.01.T01:intron 45.0%
GATGAATCTACTGAGAGGGA+AGG + Chr5:16988812-16988831 MsG0580025329.01.T01:intron 45.0%
GCACATTATGTTGGACAGTG+GGG + Chr5:16988990-16989009 MsG0580025329.01.T01:CDS 45.0%
GGAAAAGGAAAAGGGAACGA+AGG - Chr5:16987737-16987756 None:intergenic 45.0%
GGCCAAACAATAAGGTGCAA+AGG - Chr5:16987850-16987869 None:intergenic 45.0%
GGGTAAAGGAATTGGGGAAA+AGG - Chr5:16987752-16987771 None:intergenic 45.0%
GTGAAGTGGTCCAACATAGA+AGG + Chr5:16989252-16989271 MsG0580025329.01.T01:intron 45.0%
TAAAGGGTGACTAGTGCACA+AGG - Chr5:16989621-16989640 None:intergenic 45.0%
TCAGAGTCACACTTCTAGAC+TGG - Chr5:16989197-16989216 None:intergenic 45.0%
TCTACAAATTCACCAACCCC+TGG - Chr5:16989159-16989178 None:intergenic 45.0%
TCTATCATCAGTATCACCCC+AGG - Chr5:16988211-16988230 None:intergenic 45.0%
TGAGAGGGAAGGTTATTCCT+AGG + Chr5:16988823-16988842 MsG0580025329.01.T01:intron 45.0%
TGGGGTGATACTGATGATAG+AGG + Chr5:16988210-16988229 MsG0580025329.01.T01:CDS 45.0%
TGGGTATGAGATACGACTGT+AGG + Chr5:16989534-16989553 MsG0580025329.01.T01:intron 45.0%
TGTGAGAGAAGACATGCTTC+AGG + Chr5:16988136-16988155 MsG0580025329.01.T01:intron 45.0%
TTACTGCCCAGGACTTGAAT+GGG + Chr5:16990239-16990258 MsG0580025329.01.T01:CDS 45.0%
! AATCTTCGTGTTTTCGGACC+CGG + Chr5:16987816-16987835 MsG0580025329.01.T01:CDS 45.0%
! AGAATGGAGCATTCTTGCCA+CGG + Chr5:16990182-16990201 MsG0580025329.01.T01:CDS 45.0%
! CAGCTCTTGTAAAAGGTGCA+AGG + Chr5:16989413-16989432 MsG0580025329.01.T01:intron 45.0%
! GGGTCACGCCTTTAGATTTT+GGG - Chr5:16989899-16989918 None:intergenic 45.0%
! TTTAGCTCCCAACATGCATC+GGG - Chr5:16989597-16989616 None:intergenic 45.0%
!! GAGGGGTGTTTGTAGATTCA+TGG + Chr5:16989102-16989121 MsG0580025329.01.T01:intron 45.0%
!!! TTTTTTAATATAATATCATT+AGG + Chr5:16988612-16988631 MsG0580025329.01.T01:intron 5.0%
AGGACTTGAATGGGCCTATG+AGG + Chr5:16990248-16990267 MsG0580025329.01.T01:CDS 50.0%
AGGTGCAAAGGGATTCAAGC+CGG - Chr5:16987838-16987857 None:intergenic 50.0%
AGTCCTGGGCAGTAATGAAG+AGG - Chr5:16990234-16990253 None:intergenic 50.0%
ATGGATGAACTGCTTGAGCG+TGG + Chr5:16989957-16989976 MsG0580025329.01.T01:CDS 50.0%
ATGTGCAGAGCAGCTGTAGA+TGG + Chr5:16989032-16989051 MsG0580025329.01.T01:intron 50.0%
CATAGGCCCATTCAAGTCCT+GGG - Chr5:16990248-16990267 None:intergenic 50.0%
CCAAATTCCCCGATGCATGT+TGG + Chr5:16989586-16989605 MsG0580025329.01.T01:intron 50.0%
CCAACATGCATCGGGGAATT+TGG - Chr5:16989589-16989608 None:intergenic 50.0%
GAGAAGACATGCTTCAGGAG+AGG + Chr5:16988141-16988160 MsG0580025329.01.T01:intron 50.0%
GAGACCAGTTGACACAGTTC+TGG + Chr5:16989482-16989501 MsG0580025329.01.T01:intron 50.0%
GCATGGGGCCCAAAATCTAA+AGG + Chr5:16989888-16989907 MsG0580025329.01.T01:CDS 50.0%
TCATAGGCCCATTCAAGTCC+TGG - Chr5:16990249-16990268 None:intergenic 50.0%
TGTGCAGAGCAGCTGTAGAT+GGG + Chr5:16989033-16989052 MsG0580025329.01.T01:intron 50.0%
TTAGCTCCCAACATGCATCG+GGG - Chr5:16989596-16989615 None:intergenic 50.0%
TTATGTTGGACAGTGGGGCT+TGG + Chr5:16988995-16989014 MsG0580025329.01.T01:CDS 50.0%
! GGGGTCACGCCTTTAGATTT+TGG - Chr5:16989900-16989919 None:intergenic 50.0%
AAGGAGGTTGTTGAGGCCTG+GGG + Chr5:16988192-16988211 MsG0580025329.01.T01:CDS 55.0%
ACGAGTCTGGCGGGAATGAT+TGG - Chr5:16987871-16987890 None:intergenic 55.0%
AGCCACAAGCACCCTAGTTC+TGG - Chr5:16989997-16990016 None:intergenic 55.0%
AGGTGGTCATCTCGGAGTGA+TGG + Chr5:16989938-16989957 MsG0580025329.01.T01:CDS 55.0%
AGTTAAGGGTGACCAGGGGT+TGG + Chr5:16989144-16989163 MsG0580025329.01.T01:intron 55.0%
CACTCCGAGATGACCACCTT+CGG - Chr5:16989937-16989956 None:intergenic 55.0%
CCTCCTCTTCATTACTGCCC+AGG + Chr5:16990228-16990247 MsG0580025329.01.T01:CDS 55.0%
CCTGGGCAGTAATGAAGAGG+AGG - Chr5:16990231-16990250 None:intergenic 55.0%
CTCAACAACCTCCTTCGCGA+AGG - Chr5:16988187-16988206 None:intergenic 55.0%
CTTCGCGAAGGAGGTTGTTG+AGG + Chr5:16988185-16988204 MsG0580025329.01.T01:CDS 55.0%
GAAGGAGGTTGTTGAGGCCT+GGG + Chr5:16988191-16988210 MsG0580025329.01.T01:CDS 55.0%
GACAAAGTCCTTCGCGAAGG+AGG + Chr5:16988176-16988195 MsG0580025329.01.T01:CDS 55.0%
GGTGCAAAGGGATTCAAGCC+GGG - Chr5:16987837-16987856 None:intergenic 55.0%
GTGCAGAGCAGCTGTAGATG+GGG + Chr5:16989034-16989053 MsG0580025329.01.T01:intron 55.0%
TGCGACAAAGTCCTTCGCGA+AGG + Chr5:16988173-16988192 MsG0580025329.01.T01:CDS 55.0%
! TCGGGGAATTTGGGGCAAGT+TGG - Chr5:16989579-16989598 None:intergenic 55.0%
! TGCCAGAACTAGGGTGCTTG+TGG + Chr5:16989992-16990011 MsG0580025329.01.T01:CDS 55.0%
CGAAGGAGGTTGTTGAGGCC+TGG + Chr5:16988190-16988209 MsG0580025329.01.T01:CDS 60.0%
CTTCGGCAGCAAGGTGGAGA+GGG - Chr5:16989920-16989939 None:intergenic 60.0%
GATGACCACCTTCGGCAGCA+AGG - Chr5:16989929-16989948 None:intergenic 60.0%
GCAATATGGAGCGGTGTCCC+TGG - Chr5:16990121-16990140 None:intergenic 60.0%
GCTGCCGAAGGTGGTCATCT+CGG + Chr5:16989930-16989949 MsG0580025329.01.T01:CDS 60.0%
GGAGCGGTGTCCCTGGTTTA+AGG - Chr5:16990114-16990133 None:intergenic 60.0%
GTACAGGGCTAAAGAGGGGC+AGG + Chr5:16988859-16988878 MsG0580025329.01.T01:intron 60.0%
TTCGGCAGCAAGGTGGAGAG+GGG - Chr5:16989919-16989938 None:intergenic 60.0%
CCTCTCCACCTTGCTGCCGA+AGG + Chr5:16989918-16989937 MsG0580025329.01.T01:CDS 65.0%
CCTTCGGCAGCAAGGTGGAG+AGG - Chr5:16989921-16989940 None:intergenic 65.0%
CTCCACCTTGCTGCCGAAGG+TGG + Chr5:16989921-16989940 MsG0580025329.01.T01:CDS 65.0%
GACCACCTTCGGCAGCAAGG+TGG - Chr5:16989926-16989945 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 16987714 16990574 16987714 ID=MsG0580025329.01;Name=MsG0580025329.01
Chr5 mRNA 16987714 16990574 16987714 ID=MsG0580025329.01.T01;Parent=MsG0580025329.01;Name=MsG0580025329.01.T01;_AED=0.30;_eAED=0.49;_QI=0|0|0.2|1|0.5|0.4|5|298|295
Chr5 exon 16987714 16987888 16987714 ID=MsG0580025329.01.T01:exon:2931;Parent=MsG0580025329.01.T01
Chr5 exon 16988142 16988387 16988142 ID=MsG0580025329.01.T01:exon:2932;Parent=MsG0580025329.01.T01
Chr5 exon 16988916 16989019 16988916 ID=MsG0580025329.01.T01:exon:2933;Parent=MsG0580025329.01.T01
Chr5 exon 16989846 16990053 16989846 ID=MsG0580025329.01.T01:exon:2934;Parent=MsG0580025329.01.T01
Chr5 exon 16990122 16990574 16990122 ID=MsG0580025329.01.T01:exon:2935;Parent=MsG0580025329.01.T01
Chr5 CDS 16987714 16987888 16987714 ID=MsG0580025329.01.T01:cds;Parent=MsG0580025329.01.T01
Chr5 CDS 16988142 16988387 16988142 ID=MsG0580025329.01.T01:cds;Parent=MsG0580025329.01.T01
Chr5 CDS 16988916 16989019 16988916 ID=MsG0580025329.01.T01:cds;Parent=MsG0580025329.01.T01
Chr5 CDS 16989846 16990053 16989846 ID=MsG0580025329.01.T01:cds;Parent=MsG0580025329.01.T01
Chr5 CDS 16990122 16990276 16990122 ID=MsG0580025329.01.T01:cds;Parent=MsG0580025329.01.T01
Chr5 three_prime_UTR 16990277 16990574 16990277 ID=MsG0580025329.01.T01:three_prime_utr;Parent=MsG0580025329.01.T01
Gene Sequence

>MsG0580025329.01.T01

GATTCATCTGATTCGATTCACCTTCGTTCCCTTTTCCTTTTCCCCAATTCCTTTACCCTTATTCGATTACCAATTATAATGAATCCAATCTTCGTTGTTCACAATCTTCGTGTTTTCGGACCCGGCTTGAATCCCTTTGCACCTTATTGTTTGGCCAATCATTCCCGCCAGACTCAGAAGACATGCTTCAGGAGAGGCCAATTCGTTGCGACAAAGTCCTTCGCGAAGGAGGTTGTTGAGGCCTGGGGTGATACTGATGATAGAGGTTGGACCTCACTTCATGTTTATGCAAGGAAAGGTGATATTAAGCTGGTAAGTTATTTTTCTTTGTTCATTTTTTTATGCAAATTGACTATGTTTTACTTCGGAATTTTGTGGATAAAATTCGAGAAATGTATGTATATGAATGTTTATTATGAGGTGTGCTATATTGAAGCAAATAACTTGCAATTGAAAGTCGTTGGTACAGTTAAACATTGGAAAGGACAATCAGTTGCACATTATGTTGGACAGTGGGGCTTGGCAGTAAAAAAGCTTCTCAACGAAGGAATGGATGTTAATGTGACTGCATGGGGCCCAAAATCTAAAGGCGTGACCCCTCTCCACCTTGCTGCCGAAGGTGGTCATCTCGGAGTGATGGATGAACTGCTTGAGCGTGGTGCCAATATTGATGCCAGAACTAGGGTGCTTGTGGCTGTAAGTTTTTATGCTTCCCATATAGACTTCCATATTAGGACACCGCTCCATATTGCAGCTAAAGAGAGGAATAGGGATGCTGTGAAATTCTTGGTAGAGAATGGAGCATTCTTGCCACGGATATCAATGATAGCAGATTTAATCCTCCTCTTCATTACTGCCCAGGACTTGAATGGGCCTATGAGGAAATGA

Protein sequence

>MsG0580025329.01.T01

DSSDSIHLRSLFLFPNSFTLIRLPIIMNPIFVVHNLRVFGPGLNPFAPYCLANHSRQTQKTCFRRGQFVATKSFAKEVVEAWGDTDDRGWTSLHVYARKGDIKLVSYFSLFIFLCKLTMFYFGILWIKFEKCMYMNVYYEVCYIEANNLQLKVVGTVKHWKGQSVAHYVGQWGLAVKKLLNEGMDVNVTAWGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTRVLVAVSFYASHIDFHIRTPLHIAAKERNRDAVKFLVENGAFLPRISMIADLILLFITAQDLNGPMRK*