AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040176.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040176.01.T01 MTR_7g085680 99.539 217 1 0 1 217 1 217 2.40e-162 447
MsG0780040176.01.T01 MTR_1g016800 38.645 251 106 8 12 217 46 293 5.86e-44 149
MsG0780040176.01.T01 MTR_8g070650 38.528 231 108 9 17 217 27 253 7.15e-32 116
MsG0780040176.01.T01 MTR_6g083920 27.442 215 113 4 20 195 17 227 1.15e-14 70.9
MsG0780040176.01.T01 MTR_5g056110 31.959 97 60 1 111 201 123 219 1.79e-11 62.0
MsG0780040176.01.T01 MTR_6g008660 28.169 213 112 8 20 201 41 243 8.54e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040176.01.T01 AT1G55340 55.856 222 71 9 4 217 3 205 1.52e-69 211
MsG0780040176.01.T01 AT1G55340 54.545 220 67 7 4 217 3 195 2.33e-67 206
MsG0780040176.01.T01 AT3G03880 54.028 211 70 7 13 217 4 193 2.74e-63 195
MsG0780040176.01.T01 AT4G20300 43.949 157 66 5 83 217 196 352 8.96e-30 113
MsG0780040176.01.T01 AT4G20300 43.885 139 58 4 83 201 196 334 5.70e-26 103

Find 66 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGAATCTAAACTATTT+TGG 0.102004 7:-73946990 MsG0780040176.01.T01:three_prime_UTR
TAAGCTTCTTTGGATGATTT+TGG 0.165257 7:+73947426 None:intergenic
TGAGGCATAGATCTTAAATT+TGG 0.232864 7:-73948624 MsG0780040176.01.T01:five_prime_UTR
ATGATATACCAAAGTCTTAA+AGG 0.232922 7:+73948594 None:intergenic
AACTTACCAATAAGCTTCTT+TGG 0.237998 7:+73947416 None:intergenic
CTGTTGCCTTACATGCTCTT+TGG 0.238559 7:+73948468 None:intergenic
AATCATCCAAAGAAGCTTAT+TGG 0.258024 7:-73947422 MsG0780040176.01.T01:intron
CTTCATTGATTTGATTGAAA+TGG 0.283720 7:+73946856 None:intergenic
ATCAGAAGAAAGCTTAATTC+TGG 0.302031 7:-73948350 MsG0780040176.01.T01:CDS
GGATTCAGAGAAGAAGAAAA+AGG 0.333201 7:+73948808 None:intergenic
AGGAAGCTTACAACCTTTCA+TGG 0.340391 7:+73947468 None:intergenic
GTCAAGAGAGATATGAAGTT+AGG 0.367836 7:-73947235 MsG0780040176.01.T01:CDS
AACAACCTTGTGAGACGATT+AGG 0.386278 7:+73948260 None:intergenic
TCTTCTTGCAGTGGGGAAAC+AGG 0.395699 7:-73948436 MsG0780040176.01.T01:CDS
TATGCAAATATTTGAGAGGT+TGG 0.398405 7:-73947026 MsG0780040176.01.T01:three_prime_UTR
CGGATTTCAACTAGGCTTAA+CGG 0.415814 7:-73948380 MsG0780040176.01.T01:CDS
TCAAGAGAGATATGAAGTTA+GGG 0.417350 7:-73947234 MsG0780040176.01.T01:CDS
TGTTTACAGTTGGTAAGTCC+TGG 0.420464 7:-73947278 MsG0780040176.01.T01:intron
CCCATAGCCTTCAATCCTCT+TGG 0.424567 7:+73947084 None:intergenic
GAGGAACCAAAGAGCATGTA+AGG 0.432240 7:-73948474 MsG0780040176.01.T01:CDS
GAAGCAACCCTTTAAGACTT+TGG 0.451381 7:-73948602 MsG0780040176.01.T01:intron
GGAGTGGAGAATCATCGTTC+TGG 0.453670 7:-73948329 MsG0780040176.01.T01:CDS
GGCCGGAGATAACAGAAAAT+CGG 0.460576 7:-73947650 MsG0780040176.01.T01:CDS
TGATATACCAAAGTCTTAAA+GGG 0.462098 7:+73948595 None:intergenic
CCAAGAGGATTGAAGGCTAT+GGG 0.481069 7:-73947084 MsG0780040176.01.T01:CDS
GCAGAGGCCAAGAGGATTGA+AGG 0.486507 7:-73947091 MsG0780040176.01.T01:intron
TTGATTTGATTGAAATGGAT+CGG 0.493315 7:+73946861 None:intergenic
GCCAAGAGGATTGAAGGCTA+TGG 0.494932 7:-73947085 MsG0780040176.01.T01:CDS
AACATCGCAAGTGCCTTTAC+CGG 0.498467 7:+73947573 None:intergenic
AAGATCCTCGGATTTCAACT+AGG 0.502257 7:-73948388 MsG0780040176.01.T01:CDS
ACCAGAGTTCTTCTTGCAGT+GGG 0.504536 7:-73948444 MsG0780040176.01.T01:CDS
CCCCACTGCAAGAAGAACTC+TGG 0.514893 7:+73948443 None:intergenic
TCAGCAGAGGACACCGGTAA+AGG 0.516208 7:-73947586 MsG0780040176.01.T01:CDS
GGAGAAGAAAAGTAACAAGA+AGG 0.520874 7:-73947213 MsG0780040176.01.T01:intron
GAGAGAGTAATGTAAAGCTT+AGG 0.521687 7:+73947520 None:intergenic
ATTGAAGGCTATGGGGAGTG+TGG 0.522393 7:-73947076 MsG0780040176.01.T01:CDS
GGCACTTGCGATGTTATCAA+TGG 0.530662 7:-73947565 MsG0780040176.01.T01:CDS
TAACAGAAAATCGGCATCAC+CGG 0.532579 7:-73947641 MsG0780040176.01.T01:CDS
ATATCAGTCAACCATGCTCC+AGG 0.532665 7:+73947260 None:intergenic
AAAACTGAAACAGAGTTTGA+GGG 0.540597 7:+73948938 None:intergenic
AAAATCGGCATCACCGGAGA+AGG 0.542456 7:-73947635 MsG0780040176.01.T01:CDS
TTGGTATGCAGGAATTCCGA+TGG 0.546689 7:-73947691 MsG0780040176.01.T01:intron
TAGTATCGATCTTCCTTCTC+CGG 0.549815 7:+73947622 None:intergenic
ACTATTCTACGACCGGCGGC+CGG 0.561495 7:-73947667 MsG0780040176.01.T01:CDS
AACCAGAGTTCTTCTTGCAG+TGG 0.563420 7:-73948445 MsG0780040176.01.T01:CDS
CGATGGAACTATTCTACGAC+CGG 0.568292 7:-73947674 MsG0780040176.01.T01:CDS
AGTTGGTAAGTCCTGGAGCA+TGG 0.569217 7:-73947271 MsG0780040176.01.T01:CDS
TTTGGGAAGATGGAAGATGA+TGG 0.573120 7:-73946972 MsG0780040176.01.T01:three_prime_UTR
TTTCTGTTATCTCCGGCCGC+CGG 0.574206 7:+73947655 None:intergenic
GTGTGAGGGTGAAAGATCCT+CGG 0.605489 7:-73948400 MsG0780040176.01.T01:CDS
TTATTATGCAAATATTTGAG+AGG 0.616149 7:-73947030 MsG0780040176.01.T01:three_prime_UTR
AAGAAAGCTTAATTCTGGAG+TGG 0.623077 7:-73948345 MsG0780040176.01.T01:CDS
CGGTCGTAGAATAGTTCCAT+CGG 0.626224 7:+73947675 None:intergenic
TAGAAATGGAGACAGAAGAG+AGG 0.628747 7:-73948493 MsG0780040176.01.T01:exon
AGATCGATACTACACGACGA+GGG 0.631631 7:-73947611 MsG0780040176.01.T01:CDS
GATCGATACTACACGACGAG+GGG 0.647579 7:-73947610 MsG0780040176.01.T01:CDS
CAAGAGGATTGAAGGCTATG+GGG 0.656812 7:-73947083 MsG0780040176.01.T01:CDS
ATCGATACTACACGACGAGG+GGG 0.671513 7:-73947609 MsG0780040176.01.T01:CDS
CCAGAGTTCTTCTTGCAGTG+GGG 0.679245 7:-73948443 MsG0780040176.01.T01:CDS
AACAACCTAATCGTCTCACA+AGG 0.681018 7:-73948265 MsG0780040176.01.T01:intron
TGGAACTATTCTACGACCGG+CGG 0.694045 7:-73947671 MsG0780040176.01.T01:CDS
AAGATCGATACTACACGACG+AGG 0.699452 7:-73947612 MsG0780040176.01.T01:CDS
TTAAGCCTAGTTGAAATCCG+AGG 0.705168 7:+73948383 None:intergenic
GAAGCGTTTGAGATGTGTGA+GGG 0.718640 7:-73948414 MsG0780040176.01.T01:CDS
ATTTCAACTAGGCTTAACGG+TGG 0.734742 7:-73948377 MsG0780040176.01.T01:CDS
GGAAGCGTTTGAGATGTGTG+AGG 0.737974 7:-73948415 MsG0780040176.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAGAGATAAAATAAAAA+AGG + Chr7:73948663-73948682 None:intergenic 10.0%
!!! ATTTTTATGTTGTTTTATTA+TGG - Chr7:73948439-73948458 MsG0780040176.01.T01:CDS 10.0%
!!! AAAAAAAAAACTGTTTTTTG+AGG - Chr7:73947169-73947188 MsG0780040176.01.T01:intron 15.0%
!!! AAAAGAAAAAATGGTTTTTT+TGG - Chr7:73947760-73947779 MsG0780040176.01.T01:intron 15.0%
!!! ATTTTGAGTAAAAGAAAAAA+TGG - Chr7:73947751-73947770 MsG0780040176.01.T01:intron 15.0%
!!! ATTTTTTATGTGATTTTGAT+TGG - Chr7:73948092-73948111 MsG0780040176.01.T01:intron 15.0%
!!! TTGTTTTATTATGGTTAATT+GGG - Chr7:73948448-73948467 MsG0780040176.01.T01:CDS 15.0%
!! AATACAAGTTTATATCATCT+GGG + Chr7:73947983-73948002 None:intergenic 20.0%
!! GCTTACAATGATAAAAAAAT+TGG + Chr7:73947027-73947046 None:intergenic 20.0%
!! TTATTATGCAAATATTTGAG+AGG - Chr7:73948781-73948800 MsG0780040176.01.T01:intron 20.0%
!!! ACAAAGAATCTAAACTATTT+TGG - Chr7:73948821-73948840 MsG0780040176.01.T01:five_prime_UTR 20.0%
!!! CAAAGAATCTAAACTATTTT+GGG - Chr7:73948822-73948841 MsG0780040176.01.T01:five_prime_UTR 20.0%
!!! GTTGTTTTATTATGGTTAAT+TGG - Chr7:73948447-73948466 MsG0780040176.01.T01:CDS 20.0%
!!! TATGTTTTTTGTTGTAGAAA+TGG - Chr7:73947304-73947323 MsG0780040176.01.T01:intron 20.0%
! ACCACAATAGATTTAGATAA+AGG + Chr7:73947276-73947295 None:intergenic 25.0%
! ATGATATACCAAAGTCTTAA+AGG + Chr7:73947220-73947239 None:intergenic 25.0%
! CCACAATAGATTTAGATAAA+GGG + Chr7:73947275-73947294 None:intergenic 25.0%
! GAATACAAGTTTATATCATC+TGG + Chr7:73947984-73948003 None:intergenic 25.0%
! TGATATACCAAAGTCTTAAA+GGG + Chr7:73947219-73947238 None:intergenic 25.0%
! TTATTATGGTTAATTGGGTT+TGG - Chr7:73948453-73948472 MsG0780040176.01.T01:CDS 25.0%
!! CTGAAAAAAAAACTGGATTT+TGG - Chr7:73947653-73947672 MsG0780040176.01.T01:CDS 25.0%
!! CTTTTACTCAAAATCAAACA+AGG + Chr7:73947745-73947764 None:intergenic 25.0%
!! TTGATTTGATTGAAATGGAT+CGG + Chr7:73948953-73948972 None:intergenic 25.0%
!!! AAATCCAGTTTTTTTTTCAG+AGG + Chr7:73947653-73947672 None:intergenic 25.0%
!!! ATTTTTTTTCAGAAGGGTAT+TGG - Chr7:73948017-73948036 MsG0780040176.01.T01:intron 25.0%
!!! CTTCATTGATTTGATTGAAA+TGG + Chr7:73948958-73948977 None:intergenic 25.0%
!!! GTAATGATGTTGTTTTCATT+TGG - Chr7:73947806-73947825 MsG0780040176.01.T01:intron 25.0%
!!! TGATGGATTTTTTTTCAGAA+GGG - Chr7:73948011-73948030 MsG0780040176.01.T01:intron 25.0%
!!! TTGATGGATTTTTTTTCAGA+AGG - Chr7:73948010-73948029 MsG0780040176.01.T01:intron 25.0%
!!! TTTTCATTTGGTTGGTTAAT+GGG - Chr7:73947818-73947837 MsG0780040176.01.T01:intron 25.0%
!!! TTTTGGTTTGTGAAAAATGA+TGG - Chr7:73947670-73947689 MsG0780040176.01.T01:CDS 25.0%
AAAAACTGAAACAGAGTTTG+AGG + Chr7:73946877-73946896 None:intergenic 30.0%
AAAACTGAAACAGAGTTTGA+GGG + Chr7:73946876-73946895 None:intergenic 30.0%
AAAAGTAACAAGAAGGTAAG+TGG - Chr7:73948605-73948624 MsG0780040176.01.T01:five_prime_UTR 30.0%
AACTTACCAATAAGCTTCTT+TGG + Chr7:73948398-73948417 None:intergenic 30.0%
AATCATCCAAAGAAGCTTAT+TGG - Chr7:73948389-73948408 MsG0780040176.01.T01:CDS 30.0%
ACTTGTATTCTGTTCTTTGA+TGG - Chr7:73947994-73948013 MsG0780040176.01.T01:intron 30.0%
AGATGAAGATGAAGATAAAG+AGG + Chr7:73947611-73947630 None:intergenic 30.0%
ATCAGAAGAAAGCTTAATTC+TGG - Chr7:73947461-73947480 MsG0780040176.01.T01:CDS 30.0%
CCCTTTATCTAAATCTATTG+TGG - Chr7:73947272-73947291 MsG0780040176.01.T01:CDS 30.0%
GAAGATAAGCATAAAAGAGA+GGG - Chr7:73947854-73947873 MsG0780040176.01.T01:intron 30.0%
GAGTACAAACACTGAAAAAA+TGG + Chr7:73947888-73947907 None:intergenic 30.0%
TATGCAAATATTTGAGAGGT+TGG - Chr7:73948785-73948804 MsG0780040176.01.T01:intron 30.0%
TCAAGAGAGATATGAAGTTA+GGG - Chr7:73948577-73948596 MsG0780040176.01.T01:intron 30.0%
TCATCTTATTCTTCCTTGTT+TGG - Chr7:73947625-73947644 MsG0780040176.01.T01:CDS 30.0%
TGAAGATAAGCATAAAAGAG+AGG - Chr7:73947853-73947872 MsG0780040176.01.T01:intron 30.0%
TGAGGCATAGATCTTAAATT+TGG - Chr7:73947187-73947206 MsG0780040176.01.T01:intron 30.0%
TTGAAAACGACCATAACAAA+TGG - Chr7:73947572-73947591 MsG0780040176.01.T01:CDS 30.0%
! TAAGCTTCTTTGGATGATTT+TGG + Chr7:73948388-73948407 None:intergenic 30.0%
! TTTCATTTGGTTGGTTAATG+GGG - Chr7:73947819-73947838 MsG0780040176.01.T01:intron 30.0%
!! GTTTTCATTTGGTTGGTTAA+TGG - Chr7:73947817-73947836 MsG0780040176.01.T01:intron 30.0%
!! TCTAAACTATTTTGGGAAGA+TGG - Chr7:73948829-73948848 MsG0780040176.01.T01:five_prime_UTR 30.0%
!!! GTGATTTTGATTGGAAGTTT+TGG - Chr7:73948101-73948120 MsG0780040176.01.T01:intron 30.0%
!!! TGATGTTGTTTTCATTTGGT+TGG - Chr7:73947810-73947829 MsG0780040176.01.T01:intron 30.0%
ACAAACACCAAACAAACATG+TGG + Chr7:73948516-73948535 None:intergenic 35.0%
ATGTTGTCCACATGTTTGTT+TGG - Chr7:73948506-73948525 MsG0780040176.01.T01:intron 35.0%
CCATAACAAATGGATCTTCT+CGG - Chr7:73947582-73947601 MsG0780040176.01.T01:CDS 35.0%
GAAGAAGATGAAGAAGAAGA+AGG + Chr7:73947049-73947068 None:intergenic 35.0%
GAGAAGAAAAAGCTCTTGTT+TGG - Chr7:73948268-73948287 MsG0780040176.01.T01:CDS 35.0%
GAGAGAGTAATGTAAAGCTT+AGG + Chr7:73948294-73948313 None:intergenic 35.0%
GGAGAAGAAAAGTAACAAGA+AGG - Chr7:73948598-73948617 MsG0780040176.01.T01:intron 35.0%
GGATTCAGAGAAGAAGAAAA+AGG + Chr7:73947006-73947025 None:intergenic 35.0%
GTCAAGAGAGATATGAAGTT+AGG - Chr7:73948576-73948595 MsG0780040176.01.T01:intron 35.0%
! AAGAAAGCTTAATTCTGGAG+TGG - Chr7:73947466-73947485 MsG0780040176.01.T01:CDS 35.0%
! GAAGATTTTCTTGCCATGAA+AGG - Chr7:73948330-73948349 MsG0780040176.01.T01:CDS 35.0%
! GGTTCCTCTGAAAAAAAAAC+TGG - Chr7:73947646-73947665 MsG0780040176.01.T01:CDS 35.0%
!! ATGATTTTGGCCCTCTTTTT+GGG + Chr7:73948375-73948394 None:intergenic 35.0%
!! GTTTGGTGTTTGTTTACAGT+TGG - Chr7:73948523-73948542 MsG0780040176.01.T01:intron 35.0%
!! TTTTTCAGAGGAACCAAACA+AGG + Chr7:73947641-73947660 None:intergenic 35.0%
!!! TTTTTGGGTTTTTGATGCAG+AGG - Chr7:73948704-73948723 MsG0780040176.01.T01:intron 35.0%
AACAACCTAATCGTCTCACA+AGG - Chr7:73947546-73947565 MsG0780040176.01.T01:CDS 40.0%
AACAACCTTGTGAGACGATT+AGG + Chr7:73947554-73947573 None:intergenic 40.0%
AAGATCCTCGGATTTCAACT+AGG - Chr7:73947423-73947442 MsG0780040176.01.T01:CDS 40.0%
ACAAGAAGGTAAGTGGTTGT+TGG - Chr7:73948612-73948631 MsG0780040176.01.T01:five_prime_UTR 40.0%
AGGAAGCTTACAACCTTTCA+TGG + Chr7:73948346-73948365 None:intergenic 40.0%
ATTTCAACTAGGCTTAACGG+TGG - Chr7:73947434-73947453 MsG0780040176.01.T01:CDS 40.0%
CGGATTTCAACTAGGCTTAA+CGG - Chr7:73947431-73947450 MsG0780040176.01.T01:CDS 40.0%
TAACAGAAAATCGGCATCAC+CGG - Chr7:73948170-73948189 MsG0780040176.01.T01:intron 40.0%
TAGAAATGGAGACAGAAGAG+AGG - Chr7:73947318-73947337 MsG0780040176.01.T01:intron 40.0%
TCCTCAAAGACCCAAAAAGA+GGG - Chr7:73948362-73948381 MsG0780040176.01.T01:CDS 40.0%
TTAAGCCTAGTTGAAATCCG+AGG + Chr7:73947431-73947450 None:intergenic 40.0%
TTCCTCAAAGACCCAAAAAG+AGG - Chr7:73948361-73948380 MsG0780040176.01.T01:CDS 40.0%
TTTGGGAAGATGGAAGATGA+TGG - Chr7:73948839-73948858 MsG0780040176.01.T01:five_prime_UTR 40.0%
! CCGAGAAGATCCATTTGTTA+TGG + Chr7:73947585-73947604 None:intergenic 40.0%
!! GAAGCAACCCTTTAAGACTT+TGG - Chr7:73947209-73947228 MsG0780040176.01.T01:intron 40.0%
!! GATGATTTTGGCCCTCTTTT+TGG + Chr7:73948376-73948395 None:intergenic 40.0%
!! GATTGGAAGTTTTGGTATGC+AGG - Chr7:73948109-73948128 MsG0780040176.01.T01:intron 40.0%
!! TAGTATCGATCTTCCTTCTC+CGG + Chr7:73948192-73948211 None:intergenic 40.0%
!! TGTTTACAGTTGGTAAGTCC+TGG - Chr7:73948533-73948552 MsG0780040176.01.T01:intron 40.0%
!!! TGCCGATTTTCTGTTATCTC+CGG + Chr7:73948166-73948185 None:intergenic 40.0%
AACATCGCAAGTGCCTTTAC+CGG + Chr7:73948241-73948260 None:intergenic 45.0%
AACCAGAGTTCTTCTTGCAG+TGG - Chr7:73947366-73947385 MsG0780040176.01.T01:intron 45.0%
AAGATCGATACTACACGACG+AGG - Chr7:73948199-73948218 MsG0780040176.01.T01:intron 45.0%
ACCAGAGTTCTTCTTGCAGT+GGG - Chr7:73947367-73947386 MsG0780040176.01.T01:intron 45.0%
AGATCGATACTACACGACGA+GGG - Chr7:73948200-73948219 MsG0780040176.01.T01:intron 45.0%
ATATCAGTCAACCATGCTCC+AGG + Chr7:73948554-73948573 None:intergenic 45.0%
CAAGAGGATTGAAGGCTATG+GGG - Chr7:73948728-73948747 MsG0780040176.01.T01:intron 45.0%
CCAAGAGGATTGAAGGCTAT+GGG - Chr7:73948727-73948746 MsG0780040176.01.T01:intron 45.0%
CGATGGAACTATTCTACGAC+CGG - Chr7:73948137-73948156 MsG0780040176.01.T01:intron 45.0%
CGGTCGTAGAATAGTTCCAT+CGG + Chr7:73948139-73948158 None:intergenic 45.0%
CTGTTGCCTTACATGCTCTT+TGG + Chr7:73947346-73947365 None:intergenic 45.0%
GGCACTTGCGATGTTATCAA+TGG - Chr7:73948246-73948265 MsG0780040176.01.T01:intron 45.0%
GGCCGGAGATAACAGAAAAT+CGG - Chr7:73948161-73948180 MsG0780040176.01.T01:intron 45.0%
TTGGTATGCAGGAATTCCGA+TGG - Chr7:73948120-73948139 MsG0780040176.01.T01:intron 45.0%
! GAAGCGTTTGAGATGTGTGA+GGG - Chr7:73947397-73947416 MsG0780040176.01.T01:intron 45.0%
! GAGGAACCAAAGAGCATGTA+AGG - Chr7:73947337-73947356 MsG0780040176.01.T01:intron 45.0%
! TTTTTGATGCAGAGGCCAAG+AGG - Chr7:73948712-73948731 MsG0780040176.01.T01:intron 45.0%
!!! TTTTTCTAAATATAATTTTT+GGG - Chr7:73948689-73948708 MsG0780040176.01.T01:intron 5.0%
!!! TTTTTTCTAAATATAATTTT+TGG - Chr7:73948688-73948707 MsG0780040176.01.T01:intron 5.0%
AAAATCGGCATCACCGGAGA+AGG - Chr7:73948176-73948195 MsG0780040176.01.T01:intron 50.0%
ATCGATACTACACGACGAGG+GGG - Chr7:73948202-73948221 MsG0780040176.01.T01:intron 50.0%
ATTGAAGGCTATGGGGAGTG+TGG - Chr7:73948735-73948754 MsG0780040176.01.T01:intron 50.0%
CCAGAGTTCTTCTTGCAGTG+GGG - Chr7:73947368-73947387 MsG0780040176.01.T01:intron 50.0%
CCCATAGCCTTCAATCCTCT+TGG + Chr7:73948730-73948749 None:intergenic 50.0%
GATCGATACTACACGACGAG+GGG - Chr7:73948201-73948220 MsG0780040176.01.T01:intron 50.0%
GCCAAGAGGATTGAAGGCTA+TGG - Chr7:73948726-73948745 MsG0780040176.01.T01:intron 50.0%
GGAGTGGAGAATCATCGTTC+TGG - Chr7:73947482-73947501 MsG0780040176.01.T01:CDS 50.0%
GTGTGAGGGTGAAAGATCCT+CGG - Chr7:73947411-73947430 MsG0780040176.01.T01:intron 50.0%
TCTTCTTGCAGTGGGGAAAC+AGG - Chr7:73947375-73947394 MsG0780040176.01.T01:intron 50.0%
TGGAACTATTCTACGACCGG+CGG - Chr7:73948140-73948159 MsG0780040176.01.T01:intron 50.0%
!! AGTTGGTAAGTCCTGGAGCA+TGG - Chr7:73948540-73948559 MsG0780040176.01.T01:intron 50.0%
!! GGAAGCGTTTGAGATGTGTG+AGG - Chr7:73947396-73947415 MsG0780040176.01.T01:intron 50.0%
!!! GCCCTCTTTTTGGGTCTTTG+AGG + Chr7:73948366-73948385 None:intergenic 50.0%
CCCCACTGCAAGAAGAACTC+TGG + Chr7:73947371-73947390 None:intergenic 55.0%
GCAGAGGCCAAGAGGATTGA+AGG - Chr7:73948720-73948739 MsG0780040176.01.T01:intron 55.0%
TCAGCAGAGGACACCGGTAA+AGG - Chr7:73948225-73948244 MsG0780040176.01.T01:intron 55.0%
TTTCTGTTATCTCCGGCCGC+CGG + Chr7:73948159-73948178 None:intergenic 55.0%
ACTATTCTACGACCGGCGGC+CGG - Chr7:73948144-73948163 MsG0780040176.01.T01:intron 60.0%
AGGGGGTCAGCAGAGGACAC+CGG - Chr7:73948219-73948238 MsG0780040176.01.T01:intron 65.0%
CACGACGAGGGGGTCAGCAG+AGG - Chr7:73948212-73948231 MsG0780040176.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 73946836 73948997 73946836 ID=MsG0780040176.01;Name=MsG0780040176.01
Chr7 mRNA 73946836 73948997 73946836 ID=MsG0780040176.01.T01;Parent=MsG0780040176.01;Name=MsG0780040176.01.T01;_AED=0.35;_eAED=0.35;_QI=288|1|1|1|0.6|0.5|6|223|217
Chr7 exon 73946836 73947109 73946836 ID=MsG0780040176.01.T01:exon:13369;Parent=MsG0780040176.01.T01
Chr7 exon 73947214 73947291 73947214 ID=MsG0780040176.01.T01:exon:13368;Parent=MsG0780040176.01.T01
Chr7 exon 73947423 73947702 73947423 ID=MsG0780040176.01.T01:exon:13367;Parent=MsG0780040176.01.T01
Chr7 exon 73948266 73948512 73948266 ID=MsG0780040176.01.T01:exon:13366;Parent=MsG0780040176.01.T01
Chr7 exon 73948603 73948683 73948603 ID=MsG0780040176.01.T01:exon:13365;Parent=MsG0780040176.01.T01
Chr7 exon 73948793 73948997 73948793 ID=MsG0780040176.01.T01:exon:13364;Parent=MsG0780040176.01.T01
Chr7 five_prime_UTR 73948793 73948997 73948793 ID=MsG0780040176.01.T01:five_prime_utr;Parent=MsG0780040176.01.T01
Chr7 five_prime_UTR 73948603 73948683 73948603 ID=MsG0780040176.01.T01:five_prime_utr;Parent=MsG0780040176.01.T01
Chr7 five_prime_UTR 73948511 73948512 73948511 ID=MsG0780040176.01.T01:five_prime_utr;Parent=MsG0780040176.01.T01
Chr7 CDS 73948266 73948510 73948266 ID=MsG0780040176.01.T01:cds;Parent=MsG0780040176.01.T01
Chr7 CDS 73947423 73947702 73947423 ID=MsG0780040176.01.T01:cds;Parent=MsG0780040176.01.T01
Chr7 CDS 73947214 73947291 73947214 ID=MsG0780040176.01.T01:cds;Parent=MsG0780040176.01.T01
Chr7 CDS 73947059 73947109 73947059 ID=MsG0780040176.01.T01:cds;Parent=MsG0780040176.01.T01
Chr7 three_prime_UTR 73946836 73947058 73946836 ID=MsG0780040176.01.T01:three_prime_utr;Parent=MsG0780040176.01.T01
Gene Sequence

>MsG0780040176.01.T01

ATGGAGACAGAAGAGAGGAACCAAAGAGCATGTAAGGCAACAGAACCAGAGTTCTTCTTGCAGTGGGGAAACAGGAAGCGTTTGAGATGTGTGAGGGTGAAAGATCCTCGGATTTCAACTAGGCTTAACGGTGGTGTAATCAGAAGAAAGCTTAATTCTGGAGTGGAGAATCATCGTTCTGGTGTTACTGAGAAAGAAAGTTCTCATCTTCATCATCATCAACAACAACCTAATCGTCTCACAAGGAATTCCGATGGAACTATTCTACGACCGGCGGCCGGAGATAACAGAAAATCGGCATCACCGGAGAAGGAAGATCGATACTACACGACGAGGGGGTCAGCAGAGGACACCGGTAAAGGCACTTGCGATGTTATCAATGGAGAAGAAAAAGCTCTTGTTTGGCCTAAGCTTTACATTACTCTCTCAAGCAAAGAGAAAGAAGAAGATTTTCTTGCCATGAAAGGTTGTAAGCTTCCTCAAAGACCCAAAAAGAGGGCCAAAATCATCCAAAGAAGCTTATTGTTGGTAAGTCCTGGAGCATGGTTGACTGATATGTGTCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTAACAAGAAGAGGCCAAGAGGATTGAAGGCTATGGGGAGTGTGGAAAGTGATTCTGAATGA

Protein sequence

>MsG0780040176.01.T01

METEERNQRACKATEPEFFLQWGNRKRLRCVRVKDPRISTRLNGGVIRRKLNSGVENHRSGVTEKESSHLHHHQQQPNRLTRNSDGTILRPAAGDNRKSASPEKEDRYYTTRGSAEDTGKGTCDVINGEEKALVWPKLYITLSSKEKEEDFLAMKGCKLPQRPKKRAKIIQRSLLLVSPGAWLTDMCQERYEVREKKSNKKRPRGLKAMGSVESDSE*