AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010560.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010560.01.T01 MTR_2g087520 99.057 106 1 0 16 121 64 169 2.27e-69 209
MsG0280010560.01.T02 MTR_2g087520 96.203 79 3 0 4 82 172 250 2.95e-48 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010560.01.T01 AT5G22080 80.000 105 21 0 17 121 61 165 1.13e-48 156
MsG0280010560.01.T01 AT5G22080 78.723 94 20 0 17 110 61 154 2.46e-40 134
MsG0280010560.01.T02 AT5G22080 89.873 79 8 0 4 82 150 228 1.44e-38 128
MsG0280010560.01.T02 AT5G22080 87.500 80 10 0 3 82 167 246 4.74e-38 127

Find 18 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTCTTATAAAATTATCTT+TGG 0.219115 2:+71516124 MsG0280010560.01.T01:CDS
AGAAGATAATCTCTTTCATT+TGG 0.308784 2:-71517144 None:intergenic
CCACAGGCAAAGGAGGCTTT+TGG 0.370643 2:+71516197 MsG0280010560.01.T01:CDS
CCTCTTATAAAATTATCTTT+GGG 0.378667 2:+71516125 MsG0280010560.01.T01:CDS
AGCCAAGTTAATTCAGCAAA+AGG 0.416672 2:+71517168 MsG0280010560.01.T01:CDS
TGTGGATGTTTACATTTGTC+AGG 0.423617 2:-71516179 None:intergenic
GTTTATGTTAAATGTTCTGT+TGG 0.487458 2:+71516102 None:intergenic
TATATATACCTCATCAACTA+AGG 0.499356 2:-71517769 None:intergenic
GAGAAAGAAACATCTGAAGA+AGG 0.511918 2:+71517725 MsG0280010560.01.T01:CDS
AGGAGAAGAAAATGCAAATG+AGG 0.532700 2:+71518113 MsG0280010560.01.T01:CDS
AATGAAGTCCTTAGTTGATG+AGG 0.574884 2:+71517761 MsG0280010560.01.T01:CDS
GGAGAAGAAAATGCAAATGA+GGG 0.580943 2:+71518114 MsG0280010560.01.T01:CDS
CCAAAAGCCTCCTTTGCCTG+TGG 0.584611 2:-71516197 None:intergenic
TGATAAGCAATATGAACAGT+CGG 0.586242 2:+71518031 MsG0280010560.01.T01:CDS
TGACAAATGTAAACATCCAC+AGG 0.592344 2:+71516181 MsG0280010560.01.T01:CDS
TAAACATCCACAGGCAAAGG+AGG 0.595747 2:+71516190 MsG0280010560.01.T01:CDS
ATGTAAACATCCACAGGCAA+AGG 0.614761 2:+71516187 MsG0280010560.01.T01:CDS
ACAGTCGGAAGAATTCAAGC+AGG 0.661666 2:+71518046 MsG0280010560.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTTAATAAGCTAAA+AGG - Chr2:71518537-71518556 None:intergenic 10.0%
!! TATAAAATGAAGTTTAAATA+TGG - Chr2:71518686-71518705 None:intergenic 10.0%
!! TATAATATTATTATTTAGAC+AGG + Chr2:71516525-71516544 MsG0280010560.01.T01:intron 10.0%
!!! ATACATTTTAAAATTTTAGA+TGG + Chr2:71519199-71519218 MsG0280010560.01.T01:intron 10.0%
!! TTCAAAAAAAAAAAAACACT+AGG - Chr2:71519433-71519452 None:intergenic 15.0%
!!! ATTTTAAAATTTTAGATGGT+GGG + Chr2:71519203-71519222 MsG0280010560.01.T01:intron 15.0%
!!! TACTATTTTTATCAATCTAA+TGG + Chr2:71517323-71517342 MsG0280010560.01.T01:intron 15.0%
!!! TACTTATTTTTAATAAGCAA+GGG - Chr2:71517986-71518005 None:intergenic 15.0%
!!! TAGTGTTTTTTTTTTTTTGA+AGG + Chr2:71519432-71519451 MsG0280010560.01.T01:intron 15.0%
!!! TCTCATTTTATGAAATTTAT+TGG - Chr2:71519925-71519944 None:intergenic 15.0%
!!! TGTTTTATTATTATTCAAAG+TGG + Chr2:71516238-71516257 MsG0280010560.01.T01:intron 15.0%
!!! TTTTTTAACATATTGAAGAA+TGG + Chr2:71516983-71517002 MsG0280010560.01.T01:intron 15.0%
!!! TTTTTTTTTGTGAAAAAAGT+TGG + Chr2:71519081-71519100 MsG0280010560.01.T01:intron 15.0%
!! AAATATCAATCAGTATTCAT+TGG - Chr2:71520600-71520619 None:intergenic 20.0%
!! AAATTTATAGAATCTACCTT+AGG + Chr2:71516785-71516804 MsG0280010560.01.T01:intron 20.0%
!! AACTATTAACAGAAAAAGAA+TGG + Chr2:71518090-71518109 MsG0280010560.01.T01:CDS 20.0%
!! ATTATTTAGACAGGAAAATT+TGG + Chr2:71516534-71516553 MsG0280010560.01.T01:intron 20.0%
!! ATTGATAAAAATAGTAAACC+AGG - Chr2:71517319-71517338 None:intergenic 20.0%
!! ATTTCAGTACTAAATAAAGT+TGG - Chr2:71519762-71519781 None:intergenic 20.0%
!! CAGAAAAATATTTGAATTGA+AGG + Chr2:71518914-71518933 MsG0280010560.01.T01:intron 20.0%
!! CATTAAAAATTCTGTTATTG+TGG + Chr2:71518342-71518361 MsG0280010560.01.T01:intron 20.0%
!! CCTCTTATAAAATTATCTTT+GGG + Chr2:71516125-71516144 MsG0280010560.01.T01:CDS 20.0%
!! GATTCTATAAATTTCTTCTT+AGG - Chr2:71516779-71516798 None:intergenic 20.0%
!! TACTGTAGGATAATATATAT+TGG + Chr2:71516396-71516415 MsG0280010560.01.T01:intron 20.0%
!! TCTGTTTATCTATGTAAATT+TGG + Chr2:71518470-71518489 MsG0280010560.01.T01:intron 20.0%
!!! AAACCTAAAACCTTTTAATT+CGG + Chr2:71517532-71517551 MsG0280010560.01.T01:intron 20.0%
!!! AAGTACTTTATTTCTTTATC+AGG + Chr2:71518001-71518020 MsG0280010560.01.T01:intron 20.0%
!!! AAGTTATCTAAAATCATTCT+TGG - Chr2:71519697-71519716 None:intergenic 20.0%
!!! ACATTTCTAGGAATAATTTT+GGG + Chr2:71519492-71519511 MsG0280010560.01.T01:intron 20.0%
!!! AGGTATATATAGTTTTGTTA+GGG + Chr2:71517781-71517800 MsG0280010560.01.T01:intron 20.0%
!!! AGTACTTTATTTCTTTATCA+GGG + Chr2:71518002-71518021 MsG0280010560.01.T01:intron 20.0%
!!! CATTTTAAAATTTTAGATGG+TGG + Chr2:71519202-71519221 MsG0280010560.01.T01:intron 20.0%
!!! CTAACATTACATTTTTGTTA+TGG + Chr2:71520349-71520368 MsG0280010560.01.T01:intron 20.0%
!!! GTACTTATTTTTAATAAGCA+AGG - Chr2:71517987-71518006 None:intergenic 20.0%
!!! TGATTTTAGATAACTTGATA+CGG + Chr2:71519701-71519720 MsG0280010560.01.T01:intron 20.0%
!!! TGTATATTTTGTTTGTTACA+TGG + Chr2:71519518-71519537 MsG0280010560.01.T01:intron 20.0%
!!! TTCAATTCTAAGATTTTCTT+AGG + Chr2:71519005-71519024 MsG0280010560.01.T01:intron 20.0%
!!! TTTAGTTACAATGTTGTTTA+GGG + Chr2:71516332-71516351 MsG0280010560.01.T01:intron 20.0%
! AAAAATAGACCCGAATTAAA+AGG - Chr2:71517545-71517564 None:intergenic 25.0%
! AAATATTATGTAGATATCCG+AGG + Chr2:71518548-71518567 MsG0280010560.01.T01:intron 25.0%
! AATGGAGATAAGAAAAAAAC+AGG - Chr2:71517609-71517628 None:intergenic 25.0%
! AGAAATCTAAACACATTTCT+AGG + Chr2:71519480-71519499 MsG0280010560.01.T01:intron 25.0%
! AGAAGATAATCTCTTTCATT+TGG - Chr2:71517147-71517166 None:intergenic 25.0%
! AGCATTTGGAAAAAATAATG+AGG - Chr2:71517358-71517377 None:intergenic 25.0%
! AGCTTAGTTATAGATTTCAT+AGG - Chr2:71518773-71518792 None:intergenic 25.0%
! ATCATGCTAAGAGTTAAAAA+TGG - Chr2:71516899-71516918 None:intergenic 25.0%
! ATGGAGATAAGAAAAAAACA+GGG - Chr2:71517608-71517627 None:intergenic 25.0%
! ATGTAACTAAATATCGTACA+AGG - Chr2:71516310-71516329 None:intergenic 25.0%
! ATTAATGATCTTCTAGCATT+TGG - Chr2:71517372-71517391 None:intergenic 25.0%
! ATTCGATTAACCTACAAAAA+TGG - Chr2:71519121-71519140 None:intergenic 25.0%
! ATTGAGACAATATGTAATAC+TGG - Chr2:71516682-71516701 None:intergenic 25.0%
! CACAGAATACAAATATCATT+TGG - Chr2:71518817-71518836 None:intergenic 25.0%
! CAGTCTAAAAGTAATCAAAA+TGG + Chr2:71520050-71520069 MsG0280010560.01.T01:intron 25.0%
! CATAGTGGTAAAAATTAACA+TGG + Chr2:71519323-71519342 MsG0280010560.01.T01:intron 25.0%
! CATTCCATTATTAGAAGAAT+TGG + Chr2:71519784-71519803 MsG0280010560.01.T01:intron 25.0%
! GAAACAAGAAATAAACAATG+AGG - Chr2:71516288-71516307 None:intergenic 25.0%
! GCCTCTTATAAAATTATCTT+TGG + Chr2:71516124-71516143 MsG0280010560.01.T01:CDS 25.0%
! TAATCATGGTGGTAATATTT+GGG + Chr2:71519040-71519059 MsG0280010560.01.T01:intron 25.0%
! TATATATACCTCATCAACTA+AGG - Chr2:71517772-71517791 None:intergenic 25.0%
! TATTAACAGAAAAAGAATGG+AGG + Chr2:71518093-71518112 MsG0280010560.01.T01:CDS 25.0%
! TCATGCTAAGAGTTAAAAAT+GGG - Chr2:71516898-71516917 None:intergenic 25.0%
! TCTAATAAAACCCATTGTAA+AGG - Chr2:71520671-71520690 None:intergenic 25.0%
! TGTAATGATGTTTATCTCTA+GGG + Chr2:71520542-71520561 MsG0280010560.01.T01:three_prime_UTR 25.0%
! TTCGATTAACCTACAAAAAT+GGG - Chr2:71519120-71519139 None:intergenic 25.0%
! TTGATGCAAACAATGAAAAT+GGG - Chr2:71519593-71519612 None:intergenic 25.0%
! TTGTAATGATGTTTATCTCT+AGG + Chr2:71520541-71520560 MsG0280010560.01.T01:three_prime_UTR 25.0%
! TTTAGTGTAAAACTATGAGA+TGG - Chr2:71516651-71516670 None:intergenic 25.0%
!! AAGATTTTCTTAGGAATCAT+AGG + Chr2:71519014-71519033 MsG0280010560.01.T01:intron 25.0%
!! CCCAAAGATAATTTTATAAG+AGG - Chr2:71516128-71516147 None:intergenic 25.0%
!! CTTTAGTTACAATGTTGTTT+AGG + Chr2:71516331-71516350 MsG0280010560.01.T01:intron 25.0%
!! GTGTGAGTATATTTCATTTT+TGG + Chr2:71517849-71517868 MsG0280010560.01.T01:intron 25.0%
!! TTATCTAAAATCATTCTTGG+TGG - Chr2:71519694-71519713 None:intergenic 25.0%
!!! AACCTAAAACCTTTTAATTC+GGG + Chr2:71517533-71517552 MsG0280010560.01.T01:intron 25.0%
!!! AATGGAATAAAAAGTACCTA+AGG - Chr2:71516804-71516823 None:intergenic 25.0%
!!! ACATGATGATCATTTTTACT+AGG + Chr2:71518257-71518276 MsG0280010560.01.T01:intron 25.0%
!!! ATAAAGAGATACCTTTTTTC+AGG - Chr2:71519372-71519391 None:intergenic 25.0%
!!! ATTCCATTCAAGTGTTATTT+TGG + Chr2:71516816-71516835 MsG0280010560.01.T01:intron 25.0%
!!! CACATTTCTAGGAATAATTT+TGG + Chr2:71519491-71519510 MsG0280010560.01.T01:intron 25.0%
!!! CGTTTTAAAATCATGCATAT+AGG - Chr2:71520820-71520839 None:intergenic 25.0%
!!! GAGGTATATATAGTTTTGTT+AGG + Chr2:71517780-71517799 MsG0280010560.01.T01:intron 25.0%
!!! TTTTAGAAAACTGATCATGT+AGG - Chr2:71519262-71519281 None:intergenic 25.0%
AAATGTCTGTGTAGAAACAA+GGG + Chr2:71517638-71517657 MsG0280010560.01.T01:intron 30.0%
AAGCTTACATGATCAAATTC+TGG - Chr2:71517935-71517954 None:intergenic 30.0%
AAGTTGTATTGCCTTTACAA+TGG + Chr2:71520657-71520676 MsG0280010560.01.T01:three_prime_UTR 30.0%
AATATCACTACTTTGCATAG+TGG + Chr2:71519308-71519327 MsG0280010560.01.T01:intron 30.0%
AATCATGGTGGTAATATTTG+GGG + Chr2:71519041-71519060 MsG0280010560.01.T01:intron 30.0%
ACAATATCAAACTGACACAA+AGG - Chr2:71520525-71520544 None:intergenic 30.0%
ACCAATAATATTCCAAACCA+AGG - Chr2:71519960-71519979 None:intergenic 30.0%
AGGTAAGATATTAAGCTTGT+TGG + Chr2:71520261-71520280 MsG0280010560.01.T01:intron 30.0%
AGTGCAAATTACTTCTACTA+AGG + Chr2:71517240-71517259 MsG0280010560.01.T01:intron 30.0%
AGTTGTATTGCCTTTACAAT+GGG + Chr2:71520658-71520677 MsG0280010560.01.T01:three_prime_UTR 30.0%
ATTATTAGAAGAATTGGAGG+AGG + Chr2:71519790-71519809 MsG0280010560.01.T01:intron 30.0%
CAACCAAAATAACACTTGAA+TGG - Chr2:71516822-71516841 None:intergenic 30.0%
CAATATCAAACTGACACAAA+GGG - Chr2:71520524-71520543 None:intergenic 30.0%
CAGACATTTCTTCTATACAA+TGG - Chr2:71517627-71517646 None:intergenic 30.0%
CATTTCATTATCACTTCATC+AGG + Chr2:71520202-71520221 MsG0280010560.01.T01:intron 30.0%
CTAATCATGGTGGTAATATT+TGG + Chr2:71519039-71519058 MsG0280010560.01.T01:intron 30.0%
CTATGTATCAATCAGTACTA+GGG - Chr2:71520625-71520644 None:intergenic 30.0%
CTTGATGCAAACAATGAAAA+TGG - Chr2:71519594-71519613 None:intergenic 30.0%
CTTGTCAGAAAATTTCATGT+CGG + Chr2:71520150-71520169 MsG0280010560.01.T01:intron 30.0%
GCAAATCAATATGTGTTTGA+AGG - Chr2:71520325-71520344 None:intergenic 30.0%
TAAACTTTACAACTAAAGCG+AGG + Chr2:71516478-71516497 MsG0280010560.01.T01:intron 30.0%
TAACCAACATATCAGTGTAT+TGG - Chr2:71516745-71516764 None:intergenic 30.0%
TAGTGGAAGATAACTTCAAA+AGG + Chr2:71516593-71516612 MsG0280010560.01.T01:intron 30.0%
TATCAATCAGTATTCATTGG+AGG - Chr2:71520597-71520616 None:intergenic 30.0%
TCATGTCGGCAAAAAATATA+TGG + Chr2:71520164-71520183 MsG0280010560.01.T01:intron 30.0%
TCATTGTTTGCATCAAGTAA+GGG + Chr2:71519597-71519616 MsG0280010560.01.T01:intron 30.0%
TCCATTATTAGAAGAATTGG+AGG + Chr2:71519787-71519806 MsG0280010560.01.T01:intron 30.0%
TCCTCCAATTCTTCTAATAA+TGG - Chr2:71519791-71519810 None:intergenic 30.0%
TGATAAGCAATATGAACAGT+CGG + Chr2:71518031-71518050 MsG0280010560.01.T01:CDS 30.0%
TGATAATTTCTGCAACATGA+TGG + Chr2:71517031-71517050 MsG0280010560.01.T01:intron 30.0%
TGATGCAAACAATGAAAATG+GGG - Chr2:71519592-71519611 None:intergenic 30.0%
TGGAGATAAGAAAAAAACAG+GGG - Chr2:71517607-71517626 None:intergenic 30.0%
TTATGGCTGTAGAACAAAAA+GGG + Chr2:71520366-71520385 MsG0280010560.01.T01:intron 30.0%
TTCATTGTTTGCATCAAGTA+AGG + Chr2:71519596-71519615 MsG0280010560.01.T01:intron 30.0%
TTTCTTGCAACAAATACACT+AGG - Chr2:71519465-71519484 None:intergenic 30.0%
! AACCTTTTGCTGAATTAACT+TGG - Chr2:71517173-71517192 None:intergenic 30.0%
! ATACGTTCTAAATTATGGTG+TGG + Chr2:71520115-71520134 MsG0280010560.01.T01:intron 30.0%
! CATGATGTTTTCCCAAATTT+TGG + Chr2:71518400-71518419 MsG0280010560.01.T01:intron 30.0%
! GGTAAGATATTAAGCTTGTT+GGG + Chr2:71520262-71520281 MsG0280010560.01.T01:intron 30.0%
! TCTTTTGCAGATATCATTGA+TGG + Chr2:71516151-71516170 MsG0280010560.01.T01:CDS 30.0%
! TGAGGTTGAAAGTTTTTGTT+GGG + Chr2:71517433-71517452 MsG0280010560.01.T01:intron 30.0%
! TTGAGGTTGAAAGTTTTTGT+TGG + Chr2:71517432-71517451 MsG0280010560.01.T01:intron 30.0%
!! AACTAAGGACTTCATTTTTG+AGG - Chr2:71517757-71517776 None:intergenic 30.0%
!! ACCTTGGTTTGGAATATTAT+TGG + Chr2:71519956-71519975 MsG0280010560.01.T01:intron 30.0%
!! CTTTTTAAAAGGTCTAGCTT+TGG + Chr2:71518307-71518326 MsG0280010560.01.T01:intron 30.0%
!! GTGATTAGGTGCTTTTTAAA+AGG + Chr2:71518296-71518315 MsG0280010560.01.T01:intron 30.0%
!! TAACCTACAAAAATGGGTTA+AGG - Chr2:71519114-71519133 None:intergenic 30.0%
!! TAACCTTAACCCATTTTTGT+AGG + Chr2:71519108-71519127 MsG0280010560.01.T01:intron 30.0%
!!! CAAAAGCATTTTAGTTTGCA+AGG - Chr2:71518965-71518984 None:intergenic 30.0%
AAAAGTTCATTCACGCTTCA+TGG - Chr2:71519636-71519655 None:intergenic 35.0%
AAATATACTCACACGAGAAG+GGG - Chr2:71517843-71517862 None:intergenic 35.0%
AACCTGAAACTTACTACTGT+AGG + Chr2:71516382-71516401 MsG0280010560.01.T01:intron 35.0%
AACTATGAGATGGAAATGTG+AGG - Chr2:71516641-71516660 None:intergenic 35.0%
AATCATGCATATAGGTTACC+TGG - Chr2:71520812-71520831 None:intergenic 35.0%
ACTAGGCATTCCTAAAATGT+CGG + Chr2:71518274-71518293 MsG0280010560.01.T01:intron 35.0%
AGATAAGAAAAAAACAGGGG+TGG - Chr2:71517604-71517623 None:intergenic 35.0%
AGCCAAGTTAATTCAGCAAA+AGG + Chr2:71517168-71517187 MsG0280010560.01.T01:CDS 35.0%
AGGAGAAGAAAATGCAAATG+AGG + Chr2:71518113-71518132 MsG0280010560.01.T01:CDS 35.0%
AGGAGGAACAGAAAGAAATA+TGG + Chr2:71518595-71518614 MsG0280010560.01.T01:three_prime_UTR 35.0%
AGGCAGATTAAAAAAGGATG+AGG + Chr2:71518575-71518594 MsG0280010560.01.T01:three_prime_UTR 35.0%
AGGGGTGGGATAAAAAAATA+GGG - Chr2:71517589-71517608 None:intergenic 35.0%
ATCATAGGTACTAATCATGG+TGG + Chr2:71519029-71519048 MsG0280010560.01.T01:intron 35.0%
ATCATGCATATAGGTTACCT+GGG - Chr2:71520811-71520830 None:intergenic 35.0%
ATCATGGTGGTAATATTTGG+GGG + Chr2:71519042-71519061 MsG0280010560.01.T01:intron 35.0%
ATCATTCTTGGTGGAGATTA+AGG - Chr2:71519685-71519704 None:intergenic 35.0%
ATCCTACAGTAGTAAGTTTC+AGG - Chr2:71516387-71516406 None:intergenic 35.0%
CAGATTAAAAAAGGATGAGG+AGG + Chr2:71518578-71518597 MsG0280010560.01.T01:three_prime_UTR 35.0%
CCTATGTATCAATCAGTACT+AGG - Chr2:71520626-71520645 None:intergenic 35.0%
CTAAGGTTGCATTCATATCA+TGG + Chr2:71517257-71517276 MsG0280010560.01.T01:intron 35.0%
CTGAAGTCCAATAAAGATGA+CGG - Chr2:71516717-71516736 None:intergenic 35.0%
CTTAGAATTGAAATCAGCCT+TGG - Chr2:71518997-71519016 None:intergenic 35.0%
CTTCATACCGTCATCTTTAT+TGG + Chr2:71516707-71516726 MsG0280010560.01.T01:intron 35.0%
CTTGTCAAATGCCAACATTT+GGG - Chr2:71519732-71519751 None:intergenic 35.0%
GAAATATACTCACACGAGAA+GGG - Chr2:71517844-71517863 None:intergenic 35.0%
GAAATGTCTGTGTAGAAACA+AGG + Chr2:71517637-71517656 MsG0280010560.01.T01:intron 35.0%
GAGAAAGAAACATCTGAAGA+AGG + Chr2:71517725-71517744 MsG0280010560.01.T01:CDS 35.0%
GATAAGAAAAAAACAGGGGT+GGG - Chr2:71517603-71517622 None:intergenic 35.0%
GGAATCATAGGTACTAATCA+TGG + Chr2:71519026-71519045 MsG0280010560.01.T01:intron 35.0%
GGAGAAGAAAATGCAAATGA+GGG + Chr2:71518114-71518133 MsG0280010560.01.T01:CDS 35.0%
GTTATGGCTGTAGAACAAAA+AGG + Chr2:71520365-71520384 MsG0280010560.01.T01:intron 35.0%
TATTATGTAGATATCCGAGG+AGG + Chr2:71518551-71518570 MsG0280010560.01.T01:intron 35.0%
TCAGTGTCTAACCTAAAATC+TGG - Chr2:71520738-71520757 None:intergenic 35.0%
TCTCGTGTACATAATTTCTC+AGG - Chr2:71518496-71518515 None:intergenic 35.0%
TGAAATATACTCACACGAGA+AGG - Chr2:71517845-71517864 None:intergenic 35.0%
TGACAAATGTAAACATCCAC+AGG + Chr2:71516181-71516200 MsG0280010560.01.T01:CDS 35.0%
TGACCAATACACTGATATGT+TGG + Chr2:71516739-71516758 MsG0280010560.01.T01:intron 35.0%
TGTGGATGTTTACATTTGTC+AGG - Chr2:71516182-71516201 None:intergenic 35.0%
TGTGTGTAATTAGACCACAA+GGG - Chr2:71517896-71517915 None:intergenic 35.0%
TTAAGTGTGTCTGAACCAAT+TGG + Chr2:71518223-71518242 MsG0280010560.01.T01:intron 35.0%
TTAATGTGTGAATGAGTGCA+TGG - Chr2:71518160-71518179 None:intergenic 35.0%
TTACAACTAAAGCGAGGATT+GGG + Chr2:71516484-71516503 MsG0280010560.01.T01:intron 35.0%
TTCCTAAAATGTCGGTGATT+AGG + Chr2:71518282-71518301 MsG0280010560.01.T01:intron 35.0%
TTGTCAAATGCCAACATTTG+GGG - Chr2:71519731-71519750 None:intergenic 35.0%
TTGTGTGTAATTAGACCACA+AGG - Chr2:71517897-71517916 None:intergenic 35.0%
TTTACAACTAAAGCGAGGAT+TGG + Chr2:71516483-71516502 MsG0280010560.01.T01:intron 35.0%
! AATGAAGTCCTTAGTTGATG+AGG + Chr2:71517761-71517780 MsG0280010560.01.T01:CDS 35.0%
! ACAGGAAAATTTGGTAGCTT+GGG + Chr2:71516543-71516562 MsG0280010560.01.T01:intron 35.0%
! ACTTTTAGACTGCTGATGAA+AGG - Chr2:71520042-71520061 None:intergenic 35.0%
! AGCTGGAGAGATTTTATGAA+GGG + Chr2:71520230-71520249 MsG0280010560.01.T01:three_prime_UTR 35.0%
! CCTGGGTATTTTACATTAAG+CGG - Chr2:71520794-71520813 None:intergenic 35.0%
! CGACATGAAATTTTCTGACA+AGG - Chr2:71520152-71520171 None:intergenic 35.0%
! CTAGTTTGTAAACCTTGGTT+TGG + Chr2:71519945-71519964 MsG0280010560.01.T01:intron 35.0%
! GACCCGAATTAAAAGGTTTT+AGG - Chr2:71517538-71517557 None:intergenic 35.0%
! TAAAAAAAGGCTAGGGTGTT+TGG + Chr2:71520451-71520470 MsG0280010560.01.T01:three_prime_UTR 35.0%
! TGCTTTTGTACAATTTGCCA+AGG + Chr2:71518977-71518996 MsG0280010560.01.T01:intron 35.0%
! TTTTATGAAGGGTGGAAAGA+AGG + Chr2:71520241-71520260 MsG0280010560.01.T01:three_prime_UTR 35.0%
!! AGTACTGATTGATACATAGG+AGG + Chr2:71520626-71520645 MsG0280010560.01.T01:three_prime_UTR 35.0%
!! AGTTTTGTGACTTGATCTTG+AGG + Chr2:71517415-71517434 MsG0280010560.01.T01:intron 35.0%
!! CCTAGTACTGATTGATACAT+AGG + Chr2:71520623-71520642 MsG0280010560.01.T01:three_prime_UTR 35.0%
!! CTGTGAAGTGTTCTAGAATA+CGG + Chr2:71518791-71518810 MsG0280010560.01.T01:intron 35.0%
!! TGAGACTAGTTTGTAAACCT+TGG + Chr2:71519940-71519959 MsG0280010560.01.T01:intron 35.0%
!! TGTTTTCCCAAATTTTGGCA+TGG + Chr2:71518405-71518424 MsG0280010560.01.T01:intron 35.0%
!!! AGATACCTTTTTTCAGGCAA+TGG - Chr2:71519366-71519385 None:intergenic 35.0%
!!! GATTTTAGGTTAGACACTGA+TGG + Chr2:71520738-71520757 MsG0280010560.01.T01:three_prime_UTR 35.0%
!!! TAGTTTTGTTAGGGTTCTCT+TGG + Chr2:71517790-71517809 MsG0280010560.01.T01:intron 35.0%
AACGACCATTGCCTGAAAAA+AGG + Chr2:71519358-71519377 MsG0280010560.01.T01:intron 40.0%
AATATACTCACACGAGAAGG+GGG - Chr2:71517842-71517861 None:intergenic 40.0%
AATGATGTGTCTCTCATCTG+AGG + Chr2:71517389-71517408 MsG0280010560.01.T01:intron 40.0%
ACAACTAAGAGCTCCTTAGA+TGG - Chr2:71519824-71519843 None:intergenic 40.0%
AGAGGTTTCTTCTTTCTTCC+GGG + Chr2:71516566-71516585 MsG0280010560.01.T01:intron 40.0%
AGGCCTGTAAAAAAAGGCTA+GGG + Chr2:71520444-71520463 MsG0280010560.01.T01:three_prime_UTR 40.0%
AGGGTGTATACAGAACTGTA+AGG - Chr2:71517477-71517496 None:intergenic 40.0%
ATCTTCTGTCTTGAGCTTAG+GGG - Chr2:71520403-71520422 None:intergenic 40.0%
ATGCGTCAAGTAGTAGTAGT+TGG - Chr2:71520295-71520314 None:intergenic 40.0%
ATGTAAACATCCACAGGCAA+AGG + Chr2:71516187-71516206 MsG0280010560.01.T01:CDS 40.0%
ATGTCGTAGACTCATCCAAT+TGG - Chr2:71518241-71518260 None:intergenic 40.0%
CAAACTGCAAGCTGTGTTTA+TGG + Chr2:71518709-71518728 MsG0280010560.01.T01:intron 40.0%
CAGGGGTGGGATAAAAAAAT+AGG - Chr2:71517590-71517609 None:intergenic 40.0%
CCAAATGTTGGCATTTGACA+AGG + Chr2:71519730-71519749 MsG0280010560.01.T01:intron 40.0%
CCGCTTAATGTAAAATACCC+AGG + Chr2:71520791-71520810 MsG0280010560.01.T01:three_prime_UTR 40.0%
CCTAGGAATGCTTTACAGTT+GGG - Chr2:71519556-71519575 None:intergenic 40.0%
CCTTGTCAAATGCCAACATT+TGG - Chr2:71519733-71519752 None:intergenic 40.0%
CTAACAAATCCTACGTTCAG+AGG + Chr2:71520424-71520443 MsG0280010560.01.T01:three_prime_UTR 40.0%
CTGATGCCATGCCAAAATTT+GGG - Chr2:71518414-71518433 None:intergenic 40.0%
CTTCATAAAATCTCTCCAGC+TGG - Chr2:71520231-71520250 None:intergenic 40.0%
GAGAGGTTTCTTCTTTCTTC+CGG + Chr2:71516565-71516584 MsG0280010560.01.T01:intron 40.0%
GATCTTCTGTCTTGAGCTTA+GGG - Chr2:71520404-71520423 None:intergenic 40.0%
GGAAGGAACAAGAGAAAAGA+GGG + Chr2:71518647-71518666 MsG0280010560.01.T01:three_prime_UTR 40.0%
GGACTCTAGTGAGACTAATA+TGG - Chr2:71518944-71518963 None:intergenic 40.0%
GGAGGAAGGCAGATTAAAAA+AGG + Chr2:71518569-71518588 MsG0280010560.01.T01:three_prime_UTR 40.0%
GGGGTGGGATAAAAAAATAG+GGG - Chr2:71517588-71517607 None:intergenic 40.0%
GGGTGGGATAAAAAAATAGG+GGG - Chr2:71517587-71517606 None:intergenic 40.0%
GGGTGTATACAGAACTGTAA+GGG - Chr2:71517476-71517495 None:intergenic 40.0%
GTCTAATTACACACAAGAGG+TGG + Chr2:71517901-71517920 MsG0280010560.01.T01:intron 40.0%
GTGGTCTAATTACACACAAG+AGG + Chr2:71517898-71517917 MsG0280010560.01.T01:intron 40.0%
GTTATCTTCCACTATTGACC+CGG - Chr2:71516587-71516606 None:intergenic 40.0%
GTTCAGAGGCCTGTAAAAAA+AGG + Chr2:71520438-71520457 MsG0280010560.01.T01:three_prime_UTR 40.0%
TACAACTAAAGCGAGGATTG+GGG + Chr2:71516485-71516504 MsG0280010560.01.T01:intron 40.0%
TCATGTAGGCTTGTGATAGA+TGG - Chr2:71519248-71519267 None:intergenic 40.0%
TCCTAGGAATGCTTTACAGT+TGG - Chr2:71519557-71519576 None:intergenic 40.0%
TCTGATGCCATGCCAAAATT+TGG - Chr2:71518415-71518434 None:intergenic 40.0%
TGGTAATATTTGGGGGACTT+TGG + Chr2:71519049-71519068 MsG0280010560.01.T01:intron 40.0%
TTACACTTCCTCTCACATGA+AGG + Chr2:71519400-71519419 MsG0280010560.01.T01:intron 40.0%
! AAAATTTGGTAGCTTGGGAG+AGG + Chr2:71516548-71516567 MsG0280010560.01.T01:intron 40.0%
! AAGAAAGCGTGAACATGAAG+AGG + Chr2:71518620-71518639 MsG0280010560.01.T01:three_prime_UTR 40.0%
! CACCTAATCACCGACATTTT+AGG - Chr2:71518287-71518306 None:intergenic 40.0%
! CAGCTGGAGAGATTTTATGA+AGG + Chr2:71520229-71520248 MsG0280010560.01.T01:three_prime_UTR 40.0%
! CTCTGAACGTAGGATTTGTT+AGG - Chr2:71520426-71520445 None:intergenic 40.0%
! GACAGGAAAATTTGGTAGCT+TGG + Chr2:71516542-71516561 MsG0280010560.01.T01:intron 40.0%
! GCACGTATTTTCTCACTGTT+GGG - Chr2:71516435-71516454 None:intergenic 40.0%
! TGCACGTATTTTCTCACTGT+TGG - Chr2:71516436-71516455 None:intergenic 40.0%
! TGGAGAGATTTTATGAAGGG+TGG + Chr2:71520233-71520252 MsG0280010560.01.T01:three_prime_UTR 40.0%
! TTTTAATCTGCCTTCCTCCT+CGG - Chr2:71518568-71518587 None:intergenic 40.0%
!! GGGGAAGTTATTTTCTTCCT+AGG - Chr2:71519573-71519592 None:intergenic 40.0%
!! TTTATCTCTAGGGTCATGAG+AGG + Chr2:71520552-71520571 MsG0280010560.01.T01:three_prime_UTR 40.0%
!!! ACACCCTAGCCTTTTTTTAC+AGG - Chr2:71520450-71520469 None:intergenic 40.0%
ACAGTCGGAAGAATTCAAGC+AGG + Chr2:71518046-71518065 MsG0280010560.01.T01:CDS 45.0%
ACAGTTCTGTATACACCCTG+TGG + Chr2:71517478-71517497 MsG0280010560.01.T01:intron 45.0%
ACATTGATGAACTACCCCAC+AGG - Chr2:71517497-71517516 None:intergenic 45.0%
AGCGTGAACATGAAGAGGAA+TGG + Chr2:71518625-71518644 MsG0280010560.01.T01:three_prime_UTR 45.0%
AGTTCTGTATACACCCTGTG+GGG + Chr2:71517480-71517499 MsG0280010560.01.T01:intron 45.0%
ATACGGATGTCCCCAAATGT+TGG + Chr2:71519718-71519737 MsG0280010560.01.T01:intron 45.0%
ATGTAGATATCCGAGGAGGA+AGG + Chr2:71518555-71518574 MsG0280010560.01.T01:intron 45.0%
CAGTTCTGTATACACCCTGT+GGG + Chr2:71517479-71517498 MsG0280010560.01.T01:intron 45.0%
CATTGATGAACTACCCCACA+GGG - Chr2:71517496-71517515 None:intergenic 45.0%
GAACATGAAGAGGAATGGGA+AGG + Chr2:71518630-71518649 MsG0280010560.01.T01:three_prime_UTR 45.0%
GAGGCCTGTAAAAAAAGGCT+AGG + Chr2:71520443-71520462 MsG0280010560.01.T01:three_prime_UTR 45.0%
GCGTGAACATGAAGAGGAAT+GGG + Chr2:71518626-71518645 MsG0280010560.01.T01:three_prime_UTR 45.0%
GCTAAATGCCTTCATGTGAG+AGG - Chr2:71519411-71519430 None:intergenic 45.0%
GGATCTTCTGTCTTGAGCTT+AGG - Chr2:71520405-71520424 None:intergenic 45.0%
GGGAAGGAACAAGAGAAAAG+AGG + Chr2:71518646-71518665 MsG0280010560.01.T01:three_prime_UTR 45.0%
GTGTAATTAGACCACAAGGG+TGG - Chr2:71517893-71517912 None:intergenic 45.0%
TAAACATCCACAGGCAAAGG+AGG + Chr2:71516190-71516209 MsG0280010560.01.T01:CDS 45.0%
TAAGGGTAAGTGCATAGACG+TGG - Chr2:71517459-71517478 None:intergenic 45.0%
TCACAGGCAATCTATCCAAC+AGG + Chr2:71520474-71520493 MsG0280010560.01.T01:three_prime_UTR 45.0%
TCTTCTGTCTTGAGCTTAGG+GGG - Chr2:71520402-71520421 None:intergenic 45.0%
TCTTTCTTCCGGGTCAATAG+TGG + Chr2:71516576-71516595 MsG0280010560.01.T01:intron 45.0%
! AGGTTTTCTTGGACTCCTGT+TGG - Chr2:71520492-71520511 None:intergenic 45.0%
! CCCAACTGTAAAGCATTCCT+AGG + Chr2:71519553-71519572 MsG0280010560.01.T01:intron 45.0%
! CTACAGTGATTTGCAACACC+TGG + Chr2:71517298-71517317 MsG0280010560.01.T01:intron 45.0%
! CTTGCAGTGAGCCAGATTTT+AGG + Chr2:71520724-71520743 MsG0280010560.01.T01:three_prime_UTR 45.0%
! TTTTACAGGCCTCTGAACGT+AGG - Chr2:71520436-71520455 None:intergenic 45.0%
!! ACTGCAATCTCAAGAGTGTC+AGG + Chr2:71516863-71516882 MsG0280010560.01.T01:intron 45.0%
!! AGATGGTGGGTGTTGTTATC+TGG + Chr2:71519216-71519235 MsG0280010560.01.T01:intron 45.0%
!! CATGGCATCAGAAAGTGCTA+GGG + Chr2:71518423-71518442 MsG0280010560.01.T01:intron 45.0%
CACTTCATCAGGTATCCAGC+TGG + Chr2:71520213-71520232 MsG0280010560.01.T01:intron 50.0%
GGAGGCAGTTTCACCATCTA+AGG + Chr2:71519808-71519827 MsG0280010560.01.T01:intron 50.0%
! AAACTGACACAAAGGGCGCA+TGG - Chr2:71520517-71520536 None:intergenic 50.0%
! GGTCATGAGAGGCATGTCAT+TGG + Chr2:71520563-71520582 MsG0280010560.01.T01:three_prime_UTR 50.0%
!! CGAGAAGGGGGAGTATTCTA+AGG - Chr2:71517830-71517849 None:intergenic 50.0%
!! GCATGGCATCAGAAAGTGCT+AGG + Chr2:71518422-71518441 MsG0280010560.01.T01:intron 50.0%
!! TCTCAAGAGTGTCAGGACGT+AGG + Chr2:71516870-71516889 MsG0280010560.01.T01:intron 50.0%
CCAAAAGCCTCCTTTGCCTG+TGG - Chr2:71516200-71516219 None:intergenic 55.0%
CTAAAGCGAGGATTGGGGCA+TGG + Chr2:71516490-71516509 MsG0280010560.01.T01:intron 55.0%
GCTCACTGCAAGCAGATGAC+TGG - Chr2:71520716-71520735 None:intergenic 55.0%
TCTGTCTTGCACCACCCTTG+TGG + Chr2:71517879-71517898 MsG0280010560.01.T01:intron 55.0%
! AGGCTAGGGTGTTTGGTCAC+AGG + Chr2:71520458-71520477 MsG0280010560.01.T01:three_prime_UTR 55.0%
! CAGGCAAAGGAGGCTTTTGG+AGG + Chr2:71516200-71516219 MsG0280010560.01.T01:CDS 55.0%
! CCACAGGCAAAGGAGGCTTT+TGG + Chr2:71516197-71516216 MsG0280010560.01.T01:CDS 55.0%
! GGCGCATGGCTAGGTTTTCT+TGG - Chr2:71520503-71520522 None:intergenic 55.0%
! GACACAAAGGGCGCATGGCT+AGG - Chr2:71520512-71520531 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 71516113 71520860 71516113 ID=MsG0280010560.01;Name=MsG0280010560.01
Chr2 mRNA 71516113 71520860 71516113 ID=MsG0280010560.01.T01;Parent=MsG0280010560.01;Name=MsG0280010560.01.T01;_AED=0.41;_eAED=0.44;_QI=0|1|0.85|1|0.83|0.85|7|632|123
Chr2 exon 71516113 71516221 71516113 ID=MsG0280010560.01.T01:exon:15116;Parent=MsG0280010560.01.T01
Chr2 exon 71517112 71517189 71517112 ID=MsG0280010560.01.T01:exon:15117;Parent=MsG0280010560.01.T01
Chr2 exon 71517709 71517782 71517709 ID=MsG0280010560.01.T01:exon:15118;Parent=MsG0280010560.01.T01
Chr2 exon 71518023 71518135 71518023 ID=MsG0280010560.01.T01:exon:15119;Parent=MsG0280010560.01.T01
Chr2 CDS 71516113 71516221 71516113 ID=MsG0280010560.01.T01:cds;Parent=MsG0280010560.01.T01
Chr2 CDS 71517112 71517189 71517112 ID=MsG0280010560.01.T01:cds;Parent=MsG0280010560.01.T01
Chr2 CDS 71517709 71517782 71517709 ID=MsG0280010560.01.T01:cds;Parent=MsG0280010560.01.T01
Chr2 CDS 71518023 71518133 71518023 ID=MsG0280010560.01.T01:cds;Parent=MsG0280010560.01.T01
Chr2 three_prime_UTR 71518134 71518135 71518134 ID=MsG0280010560.01.T01:three_prime_utr;Parent=MsG0280010560.01.T01
Chr2 three_prime_UTR 71518561 71518668 71518561 ID=MsG0280010560.01.T01:three_prime_utr;Parent=MsG0280010560.01.T01
Chr2 three_prime_UTR 71520224 71520262 71520224 ID=MsG0280010560.01.T01:three_prime_utr;Parent=MsG0280010560.01.T01
Chr2 three_prime_UTR 71520378 71520860 71520378 ID=MsG0280010560.01.T01:three_prime_utr;Parent=MsG0280010560.01.T01
Chr2 mRNA 71518454 71520860 71518454 ID=MsG0280010560.01.T02;Parent=MsG0280010560.01;Name=MsG0280010560.01.T02;_AED=0.44;_eAED=0.46;_QI=0|0.66|0.75|1|0.66|0.75|4|396|82
Chr2 exon 71518454 71518468 71518454 ID=MsG0280010560.01.T02:exon:15123;Parent=MsG0280010560.01.T02
Chr2 CDS 71518454 71518468 71518454 ID=MsG0280010560.01.T02:cds;Parent=MsG0280010560.01.T02
Chr2 CDS 71518561 71518668 71518561 ID=MsG0280010560.01.T02:cds;Parent=MsG0280010560.01.T02
Chr2 CDS 71520224 71520262 71520224 ID=MsG0280010560.01.T02:cds;Parent=MsG0280010560.01.T02
Chr2 CDS 71520378 71520464 71520378 ID=MsG0280010560.01.T02:cds;Parent=MsG0280010560.01.T02
Chr2 three_prime_UTR 71520465 71520860 71520465 ID=MsG0280010560.01.T02:three_prime_utr;Parent=MsG0280010560.01.T02
Gene Sequence

>MsG0280010560.01.T01

ATGTTCTGTTGGCCTCTTATAAAATTATCTTTGGGTAATCTTTTGCAGATATCATTGATGGTTCATCCTGACAAATGTAAACATCCACAGGCAAAGGAGGCTTTTGGAGCACTAGCAAAAGCACAACAATTATTACTCGATCCAAATGAAAGAGATTATCTTCTTAGCCAAGTTAATTCAGCAAAAGAAGAACTTAGAGTAAAGAGAAAGAAACATCTGAAGAAGGATACAGCCTCAAAAATGAAGTCCTTAGTTGATGAGGGAAAATATGATAAGCAATATGAACAGTCGGAAGAATTCAAGCAGGAGCTCAAACTTAAAGTTCGTGAACTATTAACAGAAAAAGAATGGAGGAGAAGAAAATGCAAATGA

>MsG0280010560.01.T02

ATGAGATCATTAGAAATATCCGAGGAGGAAGGCAGATTAAAAAAGGATGAGGAGGAACAGAAAGAAATATGGAAAAGAAAGCGTGAACATGAAGAGGAATGGGAAGGAACAAGAGAAAAGAGGGTATCCAGCTGGAGAGATTTTATGAAGGGTGGAAAGAAGAACAAAAAGGGAGAAATTCGTCCCCCTAAGCTCAAGACAGAAGATCCTAACAAATCCTACGTTCAGAGGCCTGTAAAAAAAGGCTAG

Protein sequence

>MsG0280010560.01.T01

MFCWPLIKLSLGNLLQISLMVHPDKCKHPQAKEAFGALAKAQQLLLDPNERDYLLSQVNSAKEELRVKRKKHLKKDTASKMKSLVDEGKYDKQYEQSEEFKQELKLKVRELLTEKEWRRRKCK*

>MsG0280010560.01.T02

MRSLEISEEEGRLKKDEEEQKEIWKRKREHEEEWEGTREKRVSSWRDFMKGGKKNKKGEIRPPKLKTEDPNKSYVQRPVKKG*