AlfalfaGEDB | MsG0680031006.01

M. sativa cultivar ZhongmuNo.1 / MsG0680031006.01

KEGG: K13379
GO: GO:0016866 GO:0071669
PFAM: PF03214

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031006.01.T01	XP_013451101.1	98.559	347	5	0	1	347	1	347	0	712

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031006.01.T01	Q8H8T0	86.337	344	47	0	4	347	14	357	0	645

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031006.01.T01	A0A072U6Y0	98.559	347	5	0	1	347	1	347	0.0	712

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001290.01	MsG0680031006.01	0.812090	5.048657e-51	3.180027e-48
MsG0180003421.01	MsG0680031006.01	0.803771	2.973629e-49	1.507145e-46
MsG0180003857.01	MsG0680031006.01	0.815969	7.037964e-52	4.923564e-49
MsG0180003905.01	MsG0680031006.01	0.844736	6.284146e-59	1.024161e-55
MsG0180003983.01	MsG0680031006.01	0.825007	5.926362e-54	5.336389e-51
MsG0180004120.01	MsG0680031006.01	0.815821	7.595963e-52	5.292201e-49
MsG0180004538.01	MsG0680031006.01	0.839229	1.795204e-57	2.463334e-54
MsG0180004583.01	MsG0680031006.01	0.817941	2.539954e-52	1.875358e-49
MsG0180004652.01	MsG0680031006.01	0.845345	4.302950e-59	7.149646e-56
MsG0180004828.01	MsG0680031006.01	0.831916	1.272581e-55	1.400839e-52
MsG0180005655.01	MsG0680031006.01	0.817479	3.228491e-52	2.353871e-49
MsG0180005780.01	MsG0680031006.01	0.801192	1.010874e-48	4.797824e-46
MsG0380011846.01	MsG0680031006.01	0.826877	2.130798e-54	2.023628e-51
MsG0380012367.01	MsG0680031006.01	0.800536	1.376289e-48	6.424275e-46
MsG0380012818.01	MsG0680031006.01	0.833004	6.842049e-56	7.778101e-53
MsG0380014807.01	MsG0680031006.01	0.838064	3.589560e-57	4.753316e-54
MsG0680031006.01	MsG0680035776.01	0.816850	4.470760e-52	3.203874e-49
MsG0680031006.01	MsG0680035905.01	0.810478	1.129744e-50	6.817228e-48
MsG0680031006.01	MsG0780038393.01	0.800567	1.356443e-48	6.336627e-46
MsG0680031006.01	MsG0780038647.01	0.815593	8.538397e-52	5.912041e-49
MsG0680031006.01	MsG0780038736.01	0.811829	5.754954e-51	3.599325e-48
MsG0680031006.01	MsG0780040830.01	0.821470	3.968539e-53	3.231458e-50
MsG0680031006.01	MsG0780040899.01	0.806178	9.332595e-50	5.032162e-47
MsG0680031006.01	MsG0780040978.01	0.880737	4.288171e-70	2.445795e-66
MsG0680031006.01	MsG0780040990.01	0.861425	1.035500e-63	2.929144e-60
MsG0680031006.01	MsG0780041560.01	0.807756	4.326658e-50	2.429907e-47
MsG0680031006.01	MsG0880043684.01	0.849027	4.206736e-60	7.870170e-57
MsG0680031006.01	MsG0880043714.01	0.839788	1.284689e-57	1.793347e-54
MsG0680031006.01	MsG0880044139.01	0.806216	9.162567e-50	4.945334e-47
MsG0680031006.01	MsG0880044437.01	0.823972	1.038349e-53	9.076729e-51
MsG0680031006.01	MsG0880045356.01	0.852872	3.471592e-61	7.358337e-58
MsG0680031006.01	MsG0880045439.01	0.848045	7.871632e-60	1.426187e-56
MsG0680031006.01	MsG0880045612.01	0.817623	2.995081e-52	2.192258e-49
MsG0680031006.01	MsG0880045647.01	0.855795	4.962579e-62	1.159450e-58
MsG0680031006.01	MsG0880046904.01	0.826863	2.147880e-54	2.038916e-51
MsG0680031006.01	MsG0880046906.01	0.813772	2.161201e-51	1.424148e-48
MsG0680031006.01	MsG0880047146.01	0.806565	7.733750e-50	4.211288e-47
MsG0680031006.01	MsG0880047414.01	0.824104	9.672025e-54	8.485660e-51
MsG0480018767.01	MsG0680031006.01	0.809187	2.142330e-50	1.249470e-47
MsG0480020398.01	MsG0680031006.01	0.836484	9.106185e-57	1.149140e-53
MsG0480021100.01	MsG0680031006.01	0.817594	3.041734e-52	2.224571e-49
MsG0480021301.01	MsG0680031006.01	0.809211	2.116447e-50	1.235171e-47
MsG0480021740.01	MsG0680031006.01	0.802222	6.213748e-49	3.027096e-46
MsG0480021773.01	MsG0680031006.01	0.820249	7.577037e-53	5.964084e-50
MsG0480021827.01	MsG0680031006.01	0.806207	9.203455e-50	4.966271e-47
MsG0480023414.01	MsG0680031006.01	0.806388	8.427299e-50	4.568173e-47
MsG0480023426.01	MsG0680031006.01	0.822449	2.354819e-53	1.971700e-50
MsG0480023706.01	MsG0680031006.01	0.872339	3.430314e-67	1.430092e-63
MsG0480023913.01	MsG0680031006.01	0.803173	3.956077e-49	1.974542e-46
MsG0580024158.01	MsG0680031006.01	0.804562	2.034965e-49	1.052580e-46
MsG0580024773.01	MsG0680031006.01	0.800243	1.579491e-48	7.318053e-46
MsG0380015402.01	MsG0680031006.01	0.852709	3.863844e-61	8.144221e-58
MsG0380016250.01	MsG0680031006.01	0.805039	1.618232e-49	8.473945e-47
MsG0380017079.01	MsG0680031006.01	0.873161	1.821446e-67	7.826445e-64
MsG0380017128.01	MsG0680031006.01	0.828389	9.235830e-55	9.167375e-52
MsG0380017332.01	MsG0680031006.01	0.825308	5.032506e-54	4.570057e-51
MsG0380017588.01	MsG0680031006.01	0.848603	5.516731e-60	1.017760e-56
MsG0380017696.01	MsG0680031006.01	0.807471	4.974671e-50	2.773285e-47
MsG0480018228.01	MsG0680031006.01	0.823099	1.662488e-53	1.417882e-50
MsG0580026343.01	MsG0680031006.01	0.856625	2.835490e-62	6.808962e-59
MsG0580026446.01	MsG0680031006.01	0.845809	3.221790e-59	5.434392e-56
MsG0580027854.01	MsG0680031006.01	0.833274	5.860961e-56	6.716396e-53
MsG0580028364.01	MsG0680031006.01	0.824336	8.528902e-54	7.532180e-51
MsG0580028955.01	MsG0680031006.01	0.829482	5.022148e-55	5.146533e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031006.01.T01	MTR_6g015905	98.559	347	5	0	1	347	1	347	0.0	712
MsG0680031006.01.T01	MTR_7g015970	90.087	343	34	0	1	343	1	343	0.0	662
MsG0680031006.01.T01	MTR_5g046030	87.536	345	40	1	1	342	1	345	0.0	642
MsG0680031006.01.T01	MTR_2g461970	85.673	342	49	0	2	343	4	345	0.0	633
MsG0680031006.01.T01	MTR_7g079490	49.412	340	166	4	10	344	9	347	4.24e-125	363

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031006.01.T01	AT3G02230	88.012	342	41	0	6	347	16	357	0.0	643
MsG0680031006.01.T01	AT5G15650	86.880	343	45	0	5	347	15	357	0.0	640
MsG0680031006.01.T01	AT3G08900	82.799	343	59	0	5	347	11	353	0.0	621
MsG0680031006.01.T01	AT5G50750	77.101	345	79	0	2	346	8	352	0.0	582
MsG0680031006.01.T01	AT5G16510	48.680	341	169	3	9	344	8	347	1.97e-120	351
MsG0680031006.01.T01	AT5G16510	48.680	341	169	3	9	344	8	347	1.97e-120	351

Find 86 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATAAGGAACCTTGATTTCT+TGG	0.184256	6:-12764668	MsG0680031006.01.T01:CDS
TATTGGACCTTATATCATTT+TGG	0.203757	6:-12761747	MsG0680031006.01.T01:three_prime_UTR
ATTGGACCAGCTATGTATTT+TGG	0.233920	6:-12762691	MsG0680031006.01.T01:CDS
TTGATTATGAACTTTATAAT+AGG	0.252799	6:-12764558	MsG0680031006.01.T01:CDS
ACACCTTCACGAAGACTAAA+AGG	0.265235	6:+12763524	None:intergenic
TTATGTGAAGCATATGTTAT+TGG	0.274880	6:-12761710	MsG0680031006.01.T01:three_prime_UTR
AATGATATTAATAAGCTTCT+TGG	0.286010	6:-12764535	MsG0680031006.01.T01:CDS
ACATTGTGATTCCTACTATA+AGG	0.293463	6:-12764684	MsG0680031006.01.T01:CDS
AAATGATAAGGTTCAAAATA+TGG	0.294723	6:+12764634	None:intergenic
AAATCAGCACCTTCTCTAAA+AGG	0.303616	6:+12763560	None:intergenic
TGAACAGTTGTGCATTCTTT+TGG	0.313245	6:+12762148	None:intergenic
TGCTTTGCTATGAAAGATAT+AGG	0.314459	6:+12762258	None:intergenic
TCAGGTAATCTGTGATCATT+TGG	0.321965	6:-12762305	MsG0680031006.01.T01:intron
ATTGGAAATAATGTTCCTTT+TGG	0.323828	6:+12762748	None:intergenic
TCTGCAAGCTTGTCAAAATA+AGG	0.337023	6:+12762070	None:intergenic
GACAACTTCTAAACCAATCT+TGG	0.341480	6:-12761983	MsG0680031006.01.T01:three_prime_UTR
GACTCTGCATGTCGTTGCTT+TGG	0.356660	6:-12764484	MsG0680031006.01.T01:CDS
GGCTTCTTGCATTTCATTCA+AGG	0.357909	6:-12764506	MsG0680031006.01.T01:CDS
TGCCTTTGTACTCTTTCCTT+AGG	0.366078	6:+12762218	None:intergenic
CTTCTCTAAAAGGATCATAA+AGG	0.369468	6:+12763570	None:intergenic
TATTTGTAATTAACCAAGAT+TGG	0.377120	6:+12761970	None:intergenic
GCTTTGCTATGAAAGATATA+GGG	0.383869	6:+12762259	None:intergenic
ATGTCGTTGCTTTGGTTACA+TGG	0.386419	6:-12764476	MsG0680031006.01.T01:CDS
ATCTGTGATCATTTGGGACT+TGG	0.386651	6:-12762298	MsG0680031006.01.T01:CDS
TGAGTGCTAGAGATGATTAT+TGG	0.388255	6:-12761764	MsG0680031006.01.T01:three_prime_UTR
AAGAGTACAAAGGCATATTC+TGG	0.396965	6:-12762210	MsG0680031006.01.T01:CDS
ATTGCTTCCAAAATGATATA+AGG	0.402081	6:+12761740	None:intergenic
GGTCACTTGGATTGAAGCTT+GGG	0.405282	6:-12762041	MsG0680031006.01.T01:CDS
CAGCTATTTCTCATGGACTT+TGG	0.419478	6:-12763496	MsG0680031006.01.T01:CDS
TTAATAAGCTTCTTGGTCCT+AGG	0.431885	6:-12764528	MsG0680031006.01.T01:CDS
ATTGGTTTAGAAGTTGTCAT+TGG	0.437784	6:+12761988	None:intergenic
GCATTTGATCGTGATCTGAT+TGG	0.439539	6:-12762709	MsG0680031006.01.T01:CDS
ATGGGAGATGGTCAGCCAAT+TGG	0.441337	6:-12762664	MsG0680031006.01.T01:CDS
CAGGTAATCTGTGATCATTT+GGG	0.450620	6:-12762304	MsG0680031006.01.T01:CDS
CTTTCCTTAGGTTCACAAAT+GGG	0.453354	6:+12762230	None:intergenic
CATTTGATCATTGTTCAAGA+TGG	0.457553	6:-12764616	MsG0680031006.01.T01:CDS
TTCTCTAAAAGGATCATAAA+GGG	0.459821	6:+12763571	None:intergenic
ACAATAAAGTACAATGATCT+AGG	0.463295	6:-12761818	MsG0680031006.01.T01:three_prime_UTR
GGAACATTATTTCCAATGTG+TGG	0.469582	6:-12762742	MsG0680031006.01.T01:CDS
ACCTTGATTTCTTGGAAATG+TGG	0.471408	6:-12764660	MsG0680031006.01.T01:CDS
TCTTTCCTTAGGTTCACAAA+TGG	0.471856	6:+12762229	None:intergenic
CTCTCGCTTTATTGCAACAA+TGG	0.472363	6:-12764740	MsG0680031006.01.T01:exon
TCCACATTTCCAAGAAATCA+AGG	0.472751	6:+12764659	None:intergenic
TAATAAGCTTCTTGGTCCTA+GGG	0.473474	6:-12764527	MsG0680031006.01.T01:CDS
TAGGTTGCCAATGATCCATC+TGG	0.479239	6:-12763665	MsG0680031006.01.T01:CDS
ATGTCAAGTTGATCTTTCAA+TGG	0.487236	6:+12764703	None:intergenic
CGCTATGATGACATGTGGGC+TGG	0.488642	6:-12762640	MsG0680031006.01.T01:CDS
TGAGTAGGAGCATCATAATC+TGG	0.489281	6:+12763464	None:intergenic
TGACAAGCTTGCAGATGCTA+TGG	0.491811	6:-12762062	MsG0680031006.01.T01:CDS
TGGTCACTTGGATTGAAGCT+TGG	0.492678	6:-12762042	MsG0680031006.01.T01:CDS
ATGTCATCATAGCGTCCAAT+TGG	0.497351	6:+12762649	None:intergenic
AAATCAAGGTTCCTTATAGT+AGG	0.497648	6:+12764673	None:intergenic
TTGGGACTTGGAATCAAGAC+TGG	0.499638	6:-12762286	MsG0680031006.01.T01:CDS
TGAACAATGATCAAATGATA+AGG	0.500026	6:+12764622	None:intergenic
AGAGGCTTGACAAGCTGAGT+AGG	0.500476	6:+12763449	None:intergenic
ATGATGACATGTGGGCTGGC+TGG	0.518783	6:-12762636	MsG0680031006.01.T01:CDS
GTGGGCTGGCTGGTGCTGCA+AGG	0.521238	6:-12762626	MsG0680031006.01.T01:intron
GTCCATGAGAAATAGCTGTT+GGG	0.527902	6:+12763501	None:intergenic
GAACATTATTTCCAATGTGT+GGG	0.528459	6:-12762741	MsG0680031006.01.T01:CDS
ATGGAGTTGATGGACACAAA+AGG	0.531538	6:+12763606	None:intergenic
GTAACCCATTTGTGAACCTA+AGG	0.533378	6:-12762234	MsG0680031006.01.T01:CDS
TCCAATGTGTGGGATGAACT+TGG	0.536273	6:-12762731	MsG0680031006.01.T01:CDS
GTCCCAACAGCTATTTCTCA+TGG	0.539058	6:-12763503	MsG0680031006.01.T01:CDS
ACTGTTCTAACCATACCAAA+AGG	0.541114	6:-12762763	MsG0680031006.01.T01:CDS
TTGCAGATGCTATGGTCACT+TGG	0.544395	6:-12762054	MsG0680031006.01.T01:CDS
GTGTTGATGTATAAGGTATG+TGG	0.557988	6:-12762788	MsG0680031006.01.T01:intron
AGTCCATGAGAAATAGCTGT+TGG	0.559966	6:+12763500	None:intergenic
AATGAAATGCAAGAAGCCCT+AGG	0.561699	6:+12764511	None:intergenic
ATGAGACCAAAATACATAGC+TGG	0.563502	6:+12762685	None:intergenic
GTACAAAGGCATATTCTGGC+AGG	0.565304	6:-12762206	MsG0680031006.01.T01:CDS
CACCTTCACGAAGACTAAAA+GGG	0.568809	6:+12763525	None:intergenic
GCCAAGTTCATCCCACACAT+TGG	0.574815	6:+12762730	None:intergenic
AAAACTATTAAGGTTCCACC+TGG	0.576460	6:-12764583	MsG0680031006.01.T01:CDS
AAATTCAAATTCAAGATCAA+AGG	0.579265	6:+12761944	None:intergenic
TACCTAGTGTTCCTCTCAAG+AGG	0.579431	6:+12763431	None:intergenic
TGAAATGTCCAAACAAGTCA+AGG	0.580634	6:-12762113	MsG0680031006.01.T01:CDS
TTGATTTCTTGGAAATGTGG+AGG	0.588191	6:-12764657	MsG0680031006.01.T01:CDS
TCAAGTTGATCTTTCAATGG+AGG	0.604132	6:+12764706	None:intergenic
TGCTATGAAAGATATAGGGA+AGG	0.629150	6:+12762263	None:intergenic
AGCTTGTCAAGCCTCTTGAG+AGG	0.631328	6:-12763442	MsG0680031006.01.T01:CDS
AGCCTCTTGAGAGGAACACT+AGG	0.655401	6:-12763433	MsG0680031006.01.T01:intron
TTGGACGCTATGATGACATG+TGG	0.664130	6:-12762645	MsG0680031006.01.T01:CDS
TAAAGTTCATAATCAAAACC+AGG	0.671327	6:+12764565	None:intergenic
TGGACGCTATGATGACATGT+GGG	0.691207	6:-12762644	MsG0680031006.01.T01:CDS
AGTTCATAATCAAAACCAGG+TGG	0.695438	6:+12764568	None:intergenic
AACCTAAGGAAAGAGTACAA+AGG	0.702444	6:-12762220	MsG0680031006.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAATAAATTAAAACAAACA+AGG	+	Chr6:12762450-12762469	None:intergenic	10.0%
!!	TATTAAAAAAAATACAATGT+TGG	-	Chr6:12763593-12763612	MsG0680031006.01.T01:CDS	10.0%
!!	AAAACAATGTAGTTAAAATT+TGG	-	Chr6:12763461-12763480	MsG0680031006.01.T01:CDS	15.0%
!!	ATTGTATAAAACAATTTACA+TGG	-	Chr6:12763321-12763340	MsG0680031006.01.T01:intron	15.0%
!!	TTGATTATGAACTTTATAAT+AGG	-	Chr6:12761898-12761917	MsG0680031006.01.T01:three_prime_UTR	15.0%
!!	AAATGATAAGGTTCAAAATA+TGG	+	Chr6:12761825-12761844	None:intergenic	20.0%
!!	AAATTCAAATTCAAGATCAA+AGG	+	Chr6:12764515-12764534	None:intergenic	20.0%
!!	AATGATATTAATAAGCTTCT+TGG	-	Chr6:12761921-12761940	MsG0680031006.01.T01:three_prime_UTR	20.0%
!!	AATTCATATACTAATAACCT+AGG	+	Chr6:12763283-12763302	None:intergenic	20.0%
!!	AGATATTATGTATGTATGTT+AGG	-	Chr6:12763365-12763384	MsG0680031006.01.T01:intron	20.0%
!!	ATATGATTTCTTCACATTTA+TGG	-	Chr6:12762149-12762168	MsG0680031006.01.T01:CDS	20.0%
!!	GTATTCTATAACATTAGATT+TGG	-	Chr6:12762508-12762527	MsG0680031006.01.T01:intron	20.0%
!!	TAAGTTACACAAAAAGAAAA+AGG	+	Chr6:12762393-12762412	None:intergenic	20.0%
!!	TATTTGTAATTAACCAAGAT+TGG	+	Chr6:12764489-12764508	None:intergenic	20.0%
!!	TGTGTAACTTATAATTGTAT+TGG	-	Chr6:12762402-12762421	MsG0680031006.01.T01:intron	20.0%
!!!	CATGTTATACTATTATTTCT+TGG	+	Chr6:12763545-12763564	None:intergenic	20.0%
!!!	CTACTTTAGCTTTTTAATAT+TGG	-	Chr6:12762216-12762235	MsG0680031006.01.T01:CDS	20.0%
!!!	GAAATCTTTATTTAAAACCT+AGG	-	Chr6:12763263-12763282	MsG0680031006.01.T01:intron	20.0%
!!!	GACAATTCAAATTTAAAGTT+TGG	-	Chr6:12763425-12763444	MsG0680031006.01.T01:intron	20.0%
!!!	TACTACTGATGTTTTTTTTA+CGG	-	Chr6:12763076-12763095	MsG0680031006.01.T01:intron	20.0%
!!!	TCCATTGGTTTTATTTTTTT+TGG	-	Chr6:12762659-12762678	MsG0680031006.01.T01:CDS	20.0%
!!!	TCTCAAAATTTTATCGATAT+TGG	-	Chr6:12763998-12764017	MsG0680031006.01.T01:intron	20.0%
!!!	TTTGTTTTGTACAATGTTTA+TGG	-	Chr6:12762116-12762135	MsG0680031006.01.T01:CDS	20.0%
!!!	TTTTTTACGGTTTTAAATAG+CGG	-	Chr6:12763089-12763108	MsG0680031006.01.T01:intron	20.0%
!	ACAATAAAGTACAATGATCT+AGG	-	Chr6:12764638-12764657	MsG0680031006.01.T01:CDS	25.0%
!	ATTGCTTCCAAAATGATATA+AGG	+	Chr6:12764719-12764738	None:intergenic	25.0%
!	ATTTATGGTTCCATATTTCA+TGG	-	Chr6:12762164-12762183	MsG0680031006.01.T01:CDS	25.0%
!	CAAATAAAATCATCACAATG+AGG	+	Chr6:12762190-12762209	None:intergenic	25.0%
!	CATACATAATATCTCAATGT+TGG	+	Chr6:12763359-12763378	None:intergenic	25.0%
!	GCCAAAAAAAATAAAACCAA+TGG	+	Chr6:12762663-12762682	None:intergenic	25.0%
!	TAAAGTTCATAATCAAAACC+AGG	+	Chr6:12761894-12761913	None:intergenic	25.0%
!	TGAACAATGATCAAATGATA+AGG	+	Chr6:12761837-12761856	None:intergenic	25.0%
!	TTAATTGAATGATTCAGATG+TGG	-	Chr6:12763495-12763514	MsG0680031006.01.T01:CDS	25.0%
!	TTATGTGAAGCATATGTTAT+TGG	-	Chr6:12764746-12764765	MsG0680031006.01.T01:five_prime_UTR	25.0%
!!	AAATAATGTTCCTTTTGGTA+TGG	+	Chr6:12763706-12763725	None:intergenic	25.0%
!!	AGTATTTGTGTTGATGTATA+AGG	-	Chr6:12763661-12763680	MsG0680031006.01.T01:CDS	25.0%
!!	ATTGGAAATAATGTTCCTTT+TGG	+	Chr6:12763711-12763730	None:intergenic	25.0%
!!	CACAAAAAGTACATAAGAAA+AGG	+	Chr6:12762766-12762785	None:intergenic	25.0%
!!	GAACCTTAATAGTTTTTGAA+GGG	+	Chr6:12761869-12761888	None:intergenic	25.0%
!!	TATTGGACCTTATATCATTT+TGG	-	Chr6:12764709-12764728	MsG0680031006.01.T01:CDS	25.0%
!!	TTCTCTAAAAGGATCATAAA+GGG	+	Chr6:12762888-12762907	None:intergenic	25.0%
!!	TTGTGTTTTATGTGTCAATA+CGG	-	Chr6:12762363-12762382	MsG0680031006.01.T01:intron	25.0%
!!!	ATAGACTTGAATCGATTTTA+TGG	-	Chr6:12764063-12764082	MsG0680031006.01.T01:intron	25.0%
!!!	CAATGATTCTTTAAGTTGTT+TGG	+	Chr6:12764116-12764135	None:intergenic	25.0%
!!!	GTTTTATTTTTTTTGGCATC+TGG	-	Chr6:12762666-12762685	MsG0680031006.01.T01:CDS	25.0%
!!!	TAATTGTATTGGTTCAGTTA+TGG	-	Chr6:12762413-12762432	MsG0680031006.01.T01:intron	25.0%
!!!	TTTCTTATGTACTTTTTGTG+TGG	-	Chr6:12762766-12762785	MsG0680031006.01.T01:CDS	25.0%
	AAACAAGTCAAGGAAAAACT+TGG	-	Chr6:12764353-12764372	MsG0680031006.01.T01:intron	30.0%
	AAATCAAGGTTCCTTATAGT+AGG	+	Chr6:12761786-12761805	None:intergenic	30.0%
	ACATTGTGATTCCTACTATA+AGG	-	Chr6:12761772-12761791	MsG0680031006.01.T01:three_prime_UTR	30.0%
	CATTTGATCATTGTTCAAGA+TGG	-	Chr6:12761840-12761859	MsG0680031006.01.T01:three_prime_UTR	30.0%
	GAACATTATTTCCAATGTGT+GGG	-	Chr6:12763715-12763734	MsG0680031006.01.T01:intron	30.0%
	GTGCATGATATTTAAACTCT+TGG	-	Chr6:12763615-12763634	MsG0680031006.01.T01:CDS	30.0%
	TAATATTGGATATTGCGTTC+CGG	-	Chr6:12762230-12762249	MsG0680031006.01.T01:CDS	30.0%
	TATAAGGAACCTTGATTTCT+TGG	-	Chr6:12761788-12761807	MsG0680031006.01.T01:three_prime_UTR	30.0%
	TGACCCTTCAAAAACTATTA+AGG	-	Chr6:12761863-12761882	MsG0680031006.01.T01:three_prime_UTR	30.0%
	TTGAAAAACAATGGAGTTGA+TGG	+	Chr6:12762863-12762882	None:intergenic	30.0%
	TTGAATGTAATCACATGTGT+CGG	+	Chr6:12762592-12762611	None:intergenic	30.0%
	TTGTTCATGATGAATTGTTC+AGG	-	Chr6:12764133-12764152	MsG0680031006.01.T01:intron	30.0%
	TTTACATTAGGGTAAAATGC+AGG	-	Chr6:12762293-12762312	MsG0680031006.01.T01:CDS	30.0%
!	ATTGGTTTAGAAGTTGTCAT+TGG	+	Chr6:12764471-12764490	None:intergenic	30.0%
!	CTTCTCTAAAAGGATCATAA+AGG	+	Chr6:12762889-12762908	None:intergenic	30.0%
!	GCTTTGCTATGAAAGATATA+GGG	+	Chr6:12764200-12764219	None:intergenic	30.0%
!	GGAACCTTAATAGTTTTTGA+AGG	+	Chr6:12761870-12761889	None:intergenic	30.0%
!	TGCATTTTACCCTAATGTAA+AGG	+	Chr6:12762294-12762313	None:intergenic	30.0%
!	TGCTTTGCTATGAAAGATAT+AGG	+	Chr6:12764201-12764220	None:intergenic	30.0%
!!	AGAGCAAGATTTTGGAAAAA+TGG	+	Chr6:12764287-12764306	None:intergenic	30.0%
!!	ATGTCAAGTTGATCTTTCAA+TGG	+	Chr6:12761756-12761775	None:intergenic	30.0%
!!	CTTTATGATCCTTTTAGAGA+AGG	-	Chr6:12762887-12762906	MsG0680031006.01.T01:intron	30.0%
!!	TAAAGGGTGTTGAAAAACAA+TGG	+	Chr6:12762872-12762891	None:intergenic	30.0%
!!!	AAGTTTTTCCTTGACTTGTT+TGG	+	Chr6:12764354-12764373	None:intergenic	30.0%
!!!	TGGCTTAAGATTTTTTAGCA+GGG	+	Chr6:12764451-12764470	None:intergenic	30.0%
!!!	TTGGCTTAAGATTTTTTAGC+AGG	+	Chr6:12764452-12764471	None:intergenic	30.0%
	AAAACTATTAAGGTTCCACC+TGG	-	Chr6:12761873-12761892	MsG0680031006.01.T01:three_prime_UTR	35.0%
	AAATCAGCACCTTCTCTAAA+AGG	+	Chr6:12762899-12762918	None:intergenic	35.0%
	ACCAAAATATCTCCTTGAAG+AGG	+	Chr6:12762490-12762509	None:intergenic	35.0%
	ACCTTGATTTCTTGGAAATG+TGG	-	Chr6:12761796-12761815	MsG0680031006.01.T01:three_prime_UTR	35.0%
	ACTGTTCTAACCATACCAAA+AGG	-	Chr6:12763693-12763712	MsG0680031006.01.T01:intron	35.0%
	AGTTCATAATCAAAACCAGG+TGG	+	Chr6:12761891-12761910	None:intergenic	35.0%
	ATGAGACCAAAATACATAGC+TGG	+	Chr6:12763774-12763793	None:intergenic	35.0%
	ATGTGATTACATTCAATCGC+TGG	-	Chr6:12762596-12762615	MsG0680031006.01.T01:intron	35.0%
	ATGTTAGGAACACTCACAAT+CGG	-	Chr6:12763380-12763399	MsG0680031006.01.T01:intron	35.0%
	CAGGTAATCTGTGATCATTT+GGG	-	Chr6:12764152-12764171	MsG0680031006.01.T01:intron	35.0%
	CGTTATAACACTTCGATTGA+AGG	-	Chr6:12762546-12762565	MsG0680031006.01.T01:intron	35.0%
	CTTTCCTTAGGTTCACAAAT+GGG	+	Chr6:12764229-12764248	None:intergenic	35.0%
	GACAACTTCTAAACCAATCT+TGG	-	Chr6:12764473-12764492	MsG0680031006.01.T01:CDS	35.0%
	GGAACATTATTTCCAATGTG+TGG	-	Chr6:12763714-12763733	MsG0680031006.01.T01:intron	35.0%
	GTATGTAACAATCCTCTTCA+AGG	-	Chr6:12762475-12762494	MsG0680031006.01.T01:intron	35.0%
	TAAAACCAATGGAACGACTA+AGG	+	Chr6:12762652-12762671	None:intergenic	35.0%
	TAATAAGCTTCTTGGTCCTA+GGG	-	Chr6:12761929-12761948	MsG0680031006.01.T01:three_prime_UTR	35.0%
	TCAGGTAATCTGTGATCATT+TGG	-	Chr6:12764151-12764170	MsG0680031006.01.T01:intron	35.0%
	TCCACATTTCCAAGAAATCA+AGG	+	Chr6:12761800-12761819	None:intergenic	35.0%
	TCTGCAAGCTTGTCAAAATA+AGG	+	Chr6:12764389-12764408	None:intergenic	35.0%
	TCTTTCCTTAGGTTCACAAA+TGG	+	Chr6:12764230-12764249	None:intergenic	35.0%
	TGAAATGTCCAAACAAGTCA+AGG	-	Chr6:12764343-12764362	MsG0680031006.01.T01:intron	35.0%
	TGAGTGCTAGAGATGATTAT+TGG	-	Chr6:12764692-12764711	MsG0680031006.01.T01:CDS	35.0%
	TGCTATGAAAGATATAGGGA+AGG	+	Chr6:12764196-12764215	None:intergenic	35.0%
	TTAATAAGCTTCTTGGTCCT+AGG	-	Chr6:12761928-12761947	MsG0680031006.01.T01:three_prime_UTR	35.0%
	TTGATTTCTTGGAAATGTGG+AGG	-	Chr6:12761799-12761818	MsG0680031006.01.T01:three_prime_UTR	35.0%
!	AACCTAAGGAAAGAGTACAA+AGG	-	Chr6:12764236-12764255	MsG0680031006.01.T01:intron	35.0%
!	AAGAGTACAAAGGCATATTC+TGG	-	Chr6:12764246-12764265	MsG0680031006.01.T01:intron	35.0%
!	ATTGGACCAGCTATGTATTT+TGG	-	Chr6:12763765-12763784	MsG0680031006.01.T01:intron	35.0%
!	GTGTTGATGTATAAGGTATG+TGG	-	Chr6:12763668-12763687	MsG0680031006.01.T01:intron	35.0%
!	TCCTCTTCAAGGAGATATTT+TGG	-	Chr6:12762486-12762505	MsG0680031006.01.T01:intron	35.0%
!	TGAACAGTTGTGCATTCTTT+TGG	+	Chr6:12764311-12764330	None:intergenic	35.0%
!	TTGTTTTCCAGATGGATCAT+TGG	+	Chr6:12762801-12762820	None:intergenic	35.0%
!!	ATGTACTTTTTGTGTGGCTT+AGG	-	Chr6:12762772-12762791	MsG0680031006.01.T01:CDS	35.0%
!!	CTTTTGGAAGAGCAAGATTT+TGG	+	Chr6:12764295-12764314	None:intergenic	35.0%
!!	TCAAGTTGATCTTTCAATGG+AGG	+	Chr6:12761753-12761772	None:intergenic	35.0%
!!!	AGCTATGTATTTTGGTCTCA+TGG	-	Chr6:12763773-12763792	MsG0680031006.01.T01:intron	35.0%
!!!	GCATTGATTTGTTTTCCAGA+TGG	+	Chr6:12762809-12762828	None:intergenic	35.0%
!!!	GCTATGTATTTTGGTCTCAT+GGG	-	Chr6:12763774-12763793	MsG0680031006.01.T01:intron	35.0%
	AATGAAATGCAAGAAGCCCT+AGG	+	Chr6:12761948-12761967	None:intergenic	40.0%
	ACACCTTCACGAAGACTAAA+AGG	+	Chr6:12762935-12762954	None:intergenic	40.0%
	ACCAGAACATGTCTTCAATC+AGG	+	Chr6:12763925-12763944	None:intergenic	40.0%
	AGTCCATGAGAAATAGCTGT+TGG	+	Chr6:12762959-12762978	None:intergenic	40.0%
	ATGTCATCATAGCGTCCAAT+TGG	+	Chr6:12763810-12763829	None:intergenic	40.0%
	CACAATGAGGCCATGAAATA+TGG	+	Chr6:12762177-12762196	None:intergenic	40.0%
	CACCTTCACGAAGACTAAAA+GGG	+	Chr6:12762934-12762953	None:intergenic	40.0%
	GCATTTGATCGTGATCTGAT+TGG	-	Chr6:12763747-12763766	MsG0680031006.01.T01:intron	40.0%
	GGCTTCTTGCATTTCATTCA+AGG	-	Chr6:12761950-12761969	MsG0680031006.01.T01:three_prime_UTR	40.0%
	GTAACCCATTTGTGAACCTA+AGG	-	Chr6:12764222-12764241	MsG0680031006.01.T01:intron	40.0%
	GTCCATGAGAAATAGCTGTT+GGG	+	Chr6:12762958-12762977	None:intergenic	40.0%
	TCCTGATTGAAGACATGTTC+TGG	-	Chr6:12763921-12763940	MsG0680031006.01.T01:intron	40.0%
	TGCCTTTGTACTCTTTCCTT+AGG	+	Chr6:12764241-12764260	None:intergenic	40.0%
!	ATCTGTGATCATTTGGGACT+TGG	-	Chr6:12764158-12764177	MsG0680031006.01.T01:intron	40.0%
!	ATGTCGTTGCTTTGGTTACA+TGG	-	Chr6:12761980-12761999	MsG0680031006.01.T01:three_prime_UTR	40.0%
!	CGCAATTTAAAACCGTGATC+CGG	+	Chr6:12762252-12762271	None:intergenic	40.0%
!	CTCTCGCTTTATTGCAACAA+TGG	-	Chr6:12761716-12761735	MsG0680031006.01.T01:three_prime_UTR	40.0%
!!	ATGGAGTTGATGGACACAAA+AGG	+	Chr6:12762853-12762872	None:intergenic	40.0%
!!	CAGCTATTTCTCATGGACTT+TGG	-	Chr6:12762960-12762979	MsG0680031006.01.T01:intron	40.0%
!!	TACCCTTTTAGTCTTCGTGA+AGG	-	Chr6:12762929-12762948	MsG0680031006.01.T01:intron	40.0%
!!	TATTGAAGGAGTGTTCAGTG+AGG	-	Chr6:12762622-12762641	MsG0680031006.01.T01:intron	40.0%
!!	TCAATCGCTGGTTCTATTGA+AGG	-	Chr6:12762608-12762627	MsG0680031006.01.T01:intron	40.0%
!!	TGAGTAGGAGCATCATAATC+TGG	+	Chr6:12762995-12763014	None:intergenic	40.0%
!!!	ACGGTTTTAAATAGCGGTCA+CGG	-	Chr6:12763095-12763114	MsG0680031006.01.T01:intron	40.0%
!!!	ACGGTTTTAAATTGCGGTTG+TGG	-	Chr6:12762256-12762275	MsG0680031006.01.T01:CDS	40.0%
!!!	CGGATCACGGTTTTAAATTG+CGG	-	Chr6:12762250-12762269	MsG0680031006.01.T01:CDS	40.0%
!!!	TATTTTGGTCTCATGGGAGA+TGG	-	Chr6:12763780-12763799	MsG0680031006.01.T01:intron	40.0%
	AACCAATGGAACGACTAAGG+AGG	+	Chr6:12762649-12762668	None:intergenic	45.0%
	ACACTGCACGCCTTTACATT+AGG	-	Chr6:12762281-12762300	MsG0680031006.01.T01:CDS	45.0%
	ACCAATGGAACGACTAAGGA+GGG	+	Chr6:12762648-12762667	None:intergenic	45.0%
	CACTGCACGCCTTTACATTA+GGG	-	Chr6:12762282-12762301	MsG0680031006.01.T01:CDS	45.0%
	GGCAAATGTGGTCGTATATG+TGG	-	Chr6:12762314-12762333	MsG0680031006.01.T01:intron	45.0%
	GGGTAAAATGCAGGCAAATG+TGG	-	Chr6:12762302-12762321	MsG0680031006.01.T01:CDS	45.0%
	GGTCACTTGGATTGAAGCTT+GGG	-	Chr6:12764415-12764434	MsG0680031006.01.T01:intron	45.0%
	GTCGTATATGTGGTTGCGAA+CGG	-	Chr6:12762324-12762343	MsG0680031006.01.T01:intron	45.0%
	TACCTAGTGTTCCTCTCAAG+AGG	+	Chr6:12763028-12763047	None:intergenic	45.0%
	TAGGTTGCCAATGATCCATC+TGG	-	Chr6:12762791-12762810	MsG0680031006.01.T01:intron	45.0%
	TCCAATGTGTGGGATGAACT+TGG	-	Chr6:12763725-12763744	MsG0680031006.01.T01:intron	45.0%
	TCGTATATGTGGTTGCGAAC+GGG	-	Chr6:12762325-12762344	MsG0680031006.01.T01:intron	45.0%
	TGACAAGCTTGCAGATGCTA+TGG	-	Chr6:12764394-12764413	MsG0680031006.01.T01:intron	45.0%
	TGGACGCTATGATGACATGT+GGG	-	Chr6:12763812-12763831	MsG0680031006.01.T01:intron	45.0%
	TGGTCACTTGGATTGAAGCT+TGG	-	Chr6:12764414-12764433	MsG0680031006.01.T01:intron	45.0%
	TTGCAGATGCTATGGTCACT+TGG	-	Chr6:12764402-12764421	MsG0680031006.01.T01:intron	45.0%
	TTGGACGCTATGATGACATG+TGG	-	Chr6:12763811-12763830	MsG0680031006.01.T01:intron	45.0%
	TTGGGACTTGGAATCAAGAC+TGG	-	Chr6:12764170-12764189	MsG0680031006.01.T01:intron	45.0%
!	GTACAAAGGCATATTCTGGC+AGG	-	Chr6:12764250-12764269	MsG0680031006.01.T01:intron	45.0%
!!	CACAAGTGTCGATGTCATGT+CGG	+	Chr6:12763956-12763975	None:intergenic	45.0%
!!	GTCCCAACAGCTATTTCTCA+TGG	-	Chr6:12762953-12762972	MsG0680031006.01.T01:intron	45.0%
!!!	GAAGGTGCTGATTTTGTTCG+TGG	-	Chr6:12762905-12762924	MsG0680031006.01.T01:intron	45.0%
!!!	TATTTATTTATTTTTTTCTT+AGG	-	Chr6:12763241-12763260	MsG0680031006.01.T01:intron	5.0%
	AGAGGCTTGACAAGCTGAGT+AGG	+	Chr6:12763010-12763029	None:intergenic	50.0%
	AGCCTCTTGAGAGGAACACT+AGG	-	Chr6:12763023-12763042	MsG0680031006.01.T01:intron	50.0%
	AGCTTGTCAAGCCTCTTGAG+AGG	-	Chr6:12763014-12763033	MsG0680031006.01.T01:intron	50.0%
	ATGGGAGATGGTCAGCCAAT+TGG	-	Chr6:12763792-12763811	MsG0680031006.01.T01:intron	50.0%
	GACTCTGCATGTCGTTGCTT+TGG	-	Chr6:12761972-12761991	MsG0680031006.01.T01:three_prime_UTR	50.0%
	GCCAAGTTCATCCCACACAT+TGG	+	Chr6:12763729-12763748	None:intergenic	50.0%
	GGATATTGCGTTCCGGATCA+CGG	-	Chr6:12762237-12762256	MsG0680031006.01.T01:CDS	50.0%
	TGTGGTTGCGAACGGGAATT+CGG	-	Chr6:12762332-12762351	MsG0680031006.01.T01:intron	50.0%
	CGCTATGATGACATGTGGGC+TGG	-	Chr6:12763816-12763835	MsG0680031006.01.T01:intron	55.0%
	GCCCTCCTTAGTCGTTCCAT+TGG	-	Chr6:12762644-12762663	MsG0680031006.01.T01:CDS	55.0%
	TCCGTGTCAGTGTCGTGTCT+GGG	-	Chr6:12764025-12764044	MsG0680031006.01.T01:intron	55.0%
!!	ATGATGACATGTGGGCTGGC+TGG	-	Chr6:12763820-12763839	MsG0680031006.01.T01:intron	55.0%
	GCCCAGACACGACACTGACA+CGG	+	Chr6:12764029-12764048	None:intergenic	60.0%
	GTCCGTGTCAGTGTCGTGTC+TGG	-	Chr6:12764024-12764043	MsG0680031006.01.T01:intron	60.0%
!!	GTGGGCTGGCTGGTGCTGCA+AGG	-	Chr6:12763830-12763849	MsG0680031006.01.T01:intron	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	12761691	12764787	12761691	ID=MsG0680031006.01;Name=MsG0680031006.01
Chr6	mRNA	12761691	12764787	12761691	ID=MsG0680031006.01.T01;Parent=MsG0680031006.01;Name=MsG0680031006.01.T01;_AED=0.35;_eAED=0.35;_QI=44\|1\|1\|1\|1\|1\|4\|321\|347
Chr6	exon	12761691	12762323	12761691	ID=MsG0680031006.01.T01:exon:9121;Parent=MsG0680031006.01.T01
Chr6	exon	12762627	12762795	12762627	ID=MsG0680031006.01.T01:exon:9120;Parent=MsG0680031006.01.T01
Chr6	exon	12763434	12763684	12763434	ID=MsG0680031006.01.T01:exon:9119;Parent=MsG0680031006.01.T01
Chr6	exon	12764432	12764787	12764432	ID=MsG0680031006.01.T01:exon:9118;Parent=MsG0680031006.01.T01
Chr6	five_prime_UTR	12764744	12764787	12764744	ID=MsG0680031006.01.T01:five_prime_utr;Parent=MsG0680031006.01.T01
Chr6	CDS	12764432	12764743	12764432	ID=MsG0680031006.01.T01:cds;Parent=MsG0680031006.01.T01
Chr6	CDS	12763434	12763684	12763434	ID=MsG0680031006.01.T01:cds;Parent=MsG0680031006.01.T01
Chr6	CDS	12762627	12762795	12762627	ID=MsG0680031006.01.T01:cds;Parent=MsG0680031006.01.T01
Chr6	CDS	12762012	12762323	12762012	ID=MsG0680031006.01.T01:cds;Parent=MsG0680031006.01.T01
Chr6	three_prime_UTR	12761691	12762011	12761691	ID=MsG0680031006.01.T01:three_prime_utr;Parent=MsG0680031006.01.T01

Gene Sequence

>MsG0680031006.01.T01

ATGGCTTCATCTTCACCTCCATTGAAAGATCAACTTGACATTGTGATTCCTACTATAAGGAACCTTGATTTCTTGGAAATGTGGAGGCCATATTTTGAACCTTATCATTTGATCATTGTTCAAGATGGTGACCCTTCAAAAACTATTAAGGTTCCACCTGGTTTTGATTATGAACTTTATAATAGGAATGATATTAATAAGCTTCTTGGTCCTAGGGCTTCTTGCATTTCATTCAAGGACTCTGCATGTCGTTGCTTTGGTTACATGGTTTCTAAGAAGAAATACATCTTCACTATTGATGATGATTGCTTTGTTGCCAATGATCCATCTGGAAAACAAATCAATGCACTTGAGCAGCACATTAAGAACCTTTTGTGTCCATCAACTCCATTGTTTTTCAACACCCTTTATGATCCTTTTAGAGAAGGTGCTGATTTTGTTCGTGGATACCCTTTTAGTCTTCGTGAAGGTGTCCCAACAGCTATTTCTCATGGACTTTGGCTCAACATTCCAGATTATGATGCTCCTACTCAGCTTGTCAAGCCTCTTGAGAGGAACACTAGGTATGTGGATACTGTTCTAACCATACCAAAAGGAACATTATTTCCAATGTGTGGGATGAACTTGGCATTTGATCGTGATCTGATTGGACCAGCTATGTATTTTGGTCTCATGGGAGATGGTCAGCCAATTGGACGCTATGATGACATGTGGGCTGGCTGGTGCTGCAAGGTAATCTGTGATCATTTGGGACTTGGAATCAAGACTGGCCTTCCCTATATCTTTCATAGCAAAGCAAGTAACCCATTTGTGAACCTAAGGAAAGAGTACAAAGGCATATTCTGGCAGGAAGACATCATTCCATTTTTCCAAAATCTTGCTCTTCCAAAAGAATGCACAACTGTTCAAAAATGTTACATTGAAATGTCCAAACAAGTCAAGGAAAAACTTGGAAAGATTGATCCTTATTTTGACAAGCTTGCAGATGCTATGGTCACTTGGATTGAAGCTTGGGATCAACTTAACCCTGCTAAAAAATCTTAA

Protein sequence

>MsG0680031006.01.T01

MASSSPPLKDQLDIVIPTIRNLDFLEMWRPYFEPYHLIIVQDGDPSKTIKVPPGFDYELYNRNDINKLLGPRASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVANDPSGKQINALEQHIKNLLCPSTPLFFNTLYDPFREGADFVRGYPFSLREGVPTAISHGLWLNIPDYDAPTQLVKPLERNTRYVDTVLTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCCKVICDHLGLGIKTGLPYIFHSKASNPFVNLRKEYKGIFWQEDIIPFFQNLALPKECTTVQKCYIEMSKQVKEKLGKIDPYFDKLADAMVTWIEAWDQLNPAKKS*