Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031618.01.T01 | XP_013451521.2 | 95.238 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 2.65E-159 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031618.01.T01 | Q9LFQ0 | 55.738 | 183 | 80 | 1 | 56 | 237 | 88 | 270 | 2.05E-67 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000334.01 | MsG0680031618.01 | 0.823512 | 1.330977e-53 | 1.148423e-50 |
| MsG0180000470.01 | MsG0680031618.01 | 0.807142 | 5.840063e-50 | 3.227821e-47 |
| MsG0180001892.01 | MsG0680031618.01 | 0.819202 | 1.314287e-52 | 1.004753e-49 |
| MsG0180004389.01 | MsG0680031618.01 | 0.804274 | 2.337043e-49 | 1.199897e-46 |
| MsG0180004465.01 | MsG0680031618.01 | 0.803369 | 3.601845e-49 | 1.806752e-46 |
| MsG0180005575.01 | MsG0680031618.01 | 0.800550 | 1.367345e-48 | 6.384783e-46 |
| MsG0280010992.01 | MsG0680031618.01 | 0.805753 | 1.146269e-49 | 6.114132e-47 |
| MsG0380014495.01 | MsG0680031618.01 | 0.805952 | 1.041236e-49 | 5.582032e-47 |
| MsG0380014701.01 | MsG0680031618.01 | 0.812530 | 4.048672e-51 | 2.580523e-48 |
| MsG0680030881.01 | MsG0680031618.01 | 0.828311 | 9.644697e-55 | 9.550968e-52 |
| MsG0680031617.01 | MsG0680031618.01 | 0.896756 | 2.716527e-76 | 2.978997e-72 |
| MsG0680031618.01 | MsG0680035346.01 | 0.809498 | 1.836516e-50 | 1.080012e-47 |
| MsG0680031618.01 | MsG0680035475.01 | 0.841631 | 4.227701e-58 | 6.249500e-55 |
| MsG0680031618.01 | MsG0780036340.01 | 0.814392 | 1.576756e-51 | 1.056751e-48 |
| MsG0680031618.01 | MsG0780037146.01 | 0.800915 | 1.152085e-48 | 5.429952e-46 |
| MsG0680031618.01 | MsG0780038439.01 | 0.806379 | 8.464868e-50 | 4.587539e-47 |
| MsG0680031618.01 | MsG0780038602.01 | 0.811236 | 7.746135e-51 | 4.769351e-48 |
| MsG0680031618.01 | MsG0780038603.01 | 0.844684 | 6.492905e-59 | 1.056335e-55 |
| MsG0680031618.01 | MsG0780038691.01 | 0.801596 | 8.357475e-49 | 4.006947e-46 |
| MsG0680031618.01 | MsG0780039170.01 | 0.800034 | 1.741592e-48 | 8.026484e-46 |
| MsG0680031618.01 | MsG0780039423.01 | 0.808774 | 2.625222e-50 | 1.514195e-47 |
| MsG0680031618.01 | MsG0780039443.01 | 0.827706 | 1.349162e-54 | 1.312626e-51 |
| MsG0680031618.01 | MsG0780040074.01 | 0.803281 | 3.757488e-49 | 1.880557e-46 |
| MsG0680031618.01 | MsG0780040261.01 | 0.800206 | 1.606666e-48 | 7.437168e-46 |
| MsG0680031618.01 | MsG0880041863.01 | 0.806356 | 8.561775e-50 | 4.637211e-47 |
| MsG0680031618.01 | MsG0880042520.01 | 0.813025 | 3.153742e-51 | 2.036519e-48 |
| MsG0680031618.01 | MsG0880043157.01 | 0.805125 | 1.552638e-49 | 8.148617e-47 |
| MsG0680031618.01 | MsG0880043521.01 | 0.811391 | 7.165643e-51 | 4.430125e-48 |
| MsG0680031618.01 | MsG0880043941.01 | 0.813638 | 2.313026e-51 | 1.518704e-48 |
| MsG0680031618.01 | MsG0880044210.01 | 0.809768 | 1.607011e-50 | 9.518994e-48 |
| MsG0680031618.01 | MsG0880044949.01 | 0.815561 | 8.680192e-52 | 6.004820e-49 |
| MsG0680031618.01 | MsG0880046901.01 | 0.802960 | 4.377592e-49 | 2.173042e-46 |
| MsG0480020675.01 | MsG0680031618.01 | 0.814129 | 1.802757e-51 | 1.199528e-48 |
| MsG0480020739.01 | MsG0680031618.01 | 0.805610 | 1.228531e-49 | 6.528279e-47 |
| MsG0480020780.01 | MsG0680031618.01 | 0.800668 | 1.293443e-48 | 6.058049e-46 |
| MsG0480021056.01 | MsG0680031618.01 | 0.809258 | 2.068110e-50 | 1.208454e-47 |
| MsG0480021452.01 | MsG0680031618.01 | 0.801130 | 1.041171e-48 | 4.933968e-46 |
| MsG0480021534.01 | MsG0680031618.01 | 0.818502 | 1.895431e-52 | 1.421333e-49 |
| MsG0480021918.01 | MsG0680031618.01 | 0.814191 | 1.746967e-51 | 1.164358e-48 |
| MsG0480022855.01 | MsG0680031618.01 | 0.804246 | 2.368062e-49 | 1.214921e-46 |
| MsG0480023172.01 | MsG0680031618.01 | 0.812099 | 5.027904e-51 | 3.167651e-48 |
| MsG0480023202.01 | MsG0680031618.01 | 0.807174 | 5.749908e-50 | 3.180725e-47 |
| MsG0480023488.01 | MsG0680031618.01 | 0.816193 | 6.272752e-52 | 4.415204e-49 |
| MsG0580024038.01 | MsG0680031618.01 | 0.844305 | 8.210691e-59 | 1.319980e-55 |
| MsG0580025332.01 | MsG0680031618.01 | 0.807818 | 4.196552e-50 | 2.360651e-47 |
| MsG0580025723.01 | MsG0680031618.01 | 0.815562 | 8.673473e-52 | 6.000417e-49 |
| MsG0580026002.01 | MsG0680031618.01 | 0.822379 | 2.444403e-53 | 2.042699e-50 |
| MsG0380015196.01 | MsG0680031618.01 | 0.811206 | 7.861182e-51 | 4.836476e-48 |
| MsG0380015332.01 | MsG0680031618.01 | 0.847867 | 8.812074e-60 | 1.587838e-56 |
| MsG0380015555.01 | MsG0680031618.01 | 0.804111 | 2.527059e-49 | 1.292067e-46 |
| MsG0380016247.01 | MsG0680031618.01 | 0.817519 | 3.162078e-52 | 2.307954e-49 |
| MsG0380016517.01 | MsG0680031618.01 | 0.832260 | 1.046175e-55 | 1.163029e-52 |
| MsG0580027211.01 | MsG0680031618.01 | 0.829355 | 5.391501e-55 | 5.505407e-52 |
| MsG0580029925.01 | MsG0680031618.01 | 0.806691 | 7.274552e-50 | 3.973923e-47 |
| MsG0680030364.01 | MsG0680031618.01 | 0.818871 | 1.563326e-52 | 1.184316e-49 |
| MsG0680030447.01 | MsG0680031618.01 | 0.819567 | 1.085268e-52 | 8.381702e-50 |
| MsG0280007072.01 | MsG0680031618.01 | 0.813099 | 3.038827e-51 | 1.966086e-48 |
| MsG0280007432.01 | MsG0680031618.01 | 0.814185 | 1.752604e-51 | 1.167939e-48 |
| MsG0280007955.01 | MsG0680031618.01 | 0.845869 | 3.103486e-59 | 5.244843e-56 |
| MsG0280008377.01 | MsG0680031618.01 | 0.808942 | 2.416415e-50 | 1.400024e-47 |
| MsG0280008457.01 | MsG0680031618.01 | 0.808321 | 3.280538e-50 | 1.870065e-47 |
| MsG0280009748.01 | MsG0680031618.01 | 0.800943 | 1.137075e-48 | 5.362945e-46 |
| MsG0280010533.01 | MsG0680031618.01 | 0.802763 | 4.806738e-49 | 2.374275e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031618.01.T01 | MTR_7g086720 | 68.103 | 232 | 70 | 2 | 1 | 231 | 1 | 229 | 1.03e-105 | 311 |
| MsG0680031618.01.T01 | MTR_6g027550 | 96.528 | 144 | 5 | 0 | 88 | 231 | 1 | 144 | 2.34e-102 | 300 |
| MsG0680031618.01.T01 | MTR_4g114140 | 57.692 | 182 | 76 | 1 | 57 | 237 | 76 | 257 | 1.25e-73 | 229 |
| MsG0680031618.01.T01 | MTR_2g085300 | 56.284 | 183 | 79 | 1 | 56 | 237 | 83 | 265 | 7.94e-70 | 220 |
| MsG0680031618.01.T01 | MTR_6g011080 | 47.107 | 242 | 112 | 5 | 8 | 237 | 32 | 269 | 1.05e-69 | 220 |
| MsG0680031618.01.T01 | MTR_0072s0020 | 51.500 | 200 | 96 | 1 | 39 | 237 | 72 | 271 | 5.25e-69 | 218 |
| MsG0680031618.01.T01 | MTR_4g022240 | 51.412 | 177 | 85 | 1 | 56 | 231 | 73 | 249 | 1.11e-64 | 207 |
| MsG0680031618.01.T01 | MTR_1g046740 | 50.538 | 186 | 91 | 1 | 53 | 237 | 93 | 278 | 5.09e-59 | 192 |
| MsG0680031618.01.T01 | MTR_0662s0030 | 56.250 | 144 | 62 | 1 | 95 | 237 | 15 | 158 | 1.38e-56 | 182 |
| MsG0680031618.01.T01 | MTR_1g108280 | 46.961 | 181 | 95 | 1 | 52 | 231 | 46 | 226 | 4.43e-54 | 179 |
| MsG0680031618.01.T01 | MTR_4g008010 | 35.965 | 228 | 139 | 3 | 11 | 231 | 10 | 237 | 7.76e-41 | 144 |
| MsG0680031618.01.T01 | MTR_4g077600 | 43.860 | 57 | 32 | 0 | 168 | 224 | 5 | 61 | 2.55e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031618.01.T01 | AT3G03690 | 61.429 | 210 | 77 | 2 | 22 | 231 | 24 | 229 | 2.24e-88 | 266 |
| MsG0680031618.01.T01 | AT4G27480 | 57.923 | 183 | 76 | 1 | 56 | 237 | 80 | 262 | 6.21e-73 | 228 |
| MsG0680031618.01.T01 | AT4G27480 | 57.923 | 183 | 76 | 1 | 56 | 237 | 80 | 262 | 6.21e-73 | 228 |
| MsG0680031618.01.T01 | AT4G27480 | 57.923 | 183 | 76 | 1 | 56 | 237 | 80 | 262 | 6.21e-73 | 228 |
| MsG0680031618.01.T01 | AT3G15350 | 56.284 | 183 | 79 | 1 | 56 | 237 | 81 | 263 | 3.57e-72 | 226 |
| MsG0680031618.01.T01 | AT3G15350 | 56.284 | 183 | 79 | 1 | 56 | 237 | 81 | 263 | 3.57e-72 | 226 |
| MsG0680031618.01.T01 | AT3G03690 | 59.064 | 171 | 66 | 2 | 22 | 192 | 24 | 190 | 4.23e-69 | 211 |
| MsG0680031618.01.T01 | AT1G53100 | 47.458 | 236 | 111 | 4 | 8 | 231 | 25 | 259 | 6.28e-69 | 218 |
| MsG0680031618.01.T01 | AT1G53100 | 47.458 | 236 | 111 | 4 | 8 | 231 | 25 | 259 | 7.29e-69 | 218 |
| MsG0680031618.01.T01 | AT5G15050 | 55.738 | 183 | 80 | 1 | 56 | 237 | 88 | 270 | 2.09e-68 | 217 |
| MsG0680031618.01.T01 | AT5G39990 | 54.301 | 186 | 84 | 1 | 53 | 237 | 98 | 283 | 8.70e-67 | 213 |
| MsG0680031618.01.T01 | AT1G03520 | 49.000 | 200 | 97 | 2 | 39 | 237 | 1 | 196 | 1.33e-64 | 205 |
| MsG0680031618.01.T01 | AT1G03520 | 48.515 | 202 | 99 | 2 | 37 | 237 | 88 | 285 | 7.85e-64 | 205 |
| MsG0680031618.01.T01 | AT4G03340 | 48.000 | 200 | 102 | 2 | 39 | 237 | 88 | 286 | 4.86e-63 | 203 |
| MsG0680031618.01.T01 | AT2G37585 | 51.412 | 177 | 83 | 2 | 56 | 231 | 59 | 233 | 4.82e-62 | 199 |
| MsG0680031618.01.T01 | AT3G24040 | 45.699 | 186 | 100 | 1 | 53 | 237 | 66 | 251 | 5.86e-54 | 179 |
| MsG0680031618.01.T01 | AT1G71070 | 43.646 | 181 | 101 | 1 | 52 | 231 | 45 | 225 | 1.30e-49 | 167 |
| MsG0680031618.01.T01 | AT4G03340 | 41.500 | 200 | 92 | 3 | 39 | 237 | 88 | 263 | 2.25e-47 | 162 |
Find 48 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATTAAGTTTGGGAATA+TGG | 0.178104 | 6:+23399052 | None:intergenic |
| CTTCACAATCATCTCTAAAA+TGG | 0.202291 | 6:-23399031 | MsG0680031618.01.T01:exon |
| TTCTTCTTAGGAGTTGTAAA+TGG | 0.207307 | 6:-23398588 | MsG0680031618.01.T01:CDS |
| TAAGGCTGGTATGGTTAATT+TGG | 0.213797 | 6:+23398942 | None:intergenic |
| ATTAAATATGCAAAACTAAT+TGG | 0.222896 | 6:+23398856 | None:intergenic |
| GCCAAATATCTGATTTCTTT+TGG | 0.224723 | 6:+23397801 | None:intergenic |
| GCCAAAAGAAATCAGATATT+TGG | 0.232766 | 6:-23397802 | MsG0680031618.01.T01:CDS |
| ATGCTATGGCAATTCTTCTT+AGG | 0.239237 | 6:-23398600 | MsG0680031618.01.T01:CDS |
| GATTGTGAAGAAATTAAGTT+TGG | 0.263708 | 6:+23399044 | None:intergenic |
| ACATCTCTATGATCTTTCTT+TGG | 0.304538 | 6:+23398736 | None:intergenic |
| AAGGTTGTGTTCATTGGTTT+TGG | 0.309897 | 6:+23398907 | None:intergenic |
| CATTCACCATAGCAGTCATT+TGG | 0.315591 | 6:-23398340 | MsG0680031618.01.T01:CDS |
| AGTAACTTTGTTACATATAA+AGG | 0.317512 | 6:-23398649 | MsG0680031618.01.T01:CDS |
| AAATTATTATTTGATTCATA+TGG | 0.318689 | 6:-23398770 | MsG0680031618.01.T01:CDS |
| GAAATTAAGTTTGGGAATAT+GGG | 0.344225 | 6:+23399053 | None:intergenic |
| ATTCACCATAGCAGTCATTT+GGG | 0.401509 | 6:-23398339 | MsG0680031618.01.T01:CDS |
| TGAATCAAATAATAATTTCC+TGG | 0.403261 | 6:+23398775 | None:intergenic |
| TTGGTCAAGTAGGAAATGTT+TGG | 0.403827 | 6:-23398684 | MsG0680031618.01.T01:CDS |
| TAGTGCATCTGATTATCCTT+TGG | 0.430100 | 6:-23398548 | MsG0680031618.01.T01:CDS |
| ATGTTGAAGGTTGTGTTCAT+TGG | 0.435000 | 6:+23398901 | None:intergenic |
| TGAATGAAATTCATATGCTT+TGG | 0.436558 | 6:+23398357 | None:intergenic |
| TATTTGATTCATATGGATCA+TGG | 0.436582 | 6:-23398763 | MsG0680031618.01.T01:CDS |
| GAAAATCAAAAGGTTGTTGA+AGG | 0.437111 | 6:-23398809 | MsG0680031618.01.T01:CDS |
| ACCATAGCAGTCATTTGGGT+TGG | 0.447311 | 6:-23398335 | MsG0680031618.01.T01:CDS |
| TTAGGAGTTGTAAATGGGAT+TGG | 0.455353 | 6:-23398582 | MsG0680031618.01.T01:CDS |
| TATCCTTTGGTTACACAAGA+TGG | 0.455593 | 6:-23398535 | MsG0680031618.01.T01:intron |
| GGCTGGTATGGTTAATTTGG+TGG | 0.469378 | 6:+23398945 | None:intergenic |
| TATTTAATTTCAGGTTCAAA+AGG | 0.470731 | 6:-23398841 | MsG0680031618.01.T01:CDS |
| GTTGGTATTGGAGATGTTGA+AGG | 0.471056 | 6:+23398888 | None:intergenic |
| TCTTCTTAGGAGTTGTAAAT+GGG | 0.473649 | 6:-23398587 | MsG0680031618.01.T01:CDS |
| ATTGTGAAGAAATTAAGTTT+GGG | 0.473998 | 6:+23399045 | None:intergenic |
| TTGAAGGCTTTGTACCATCC+AGG | 0.476164 | 6:-23398793 | MsG0680031618.01.T01:CDS |
| TATATAGTTTAAAAGCTGTT+GGG | 0.491319 | 6:+23397756 | None:intergenic |
| TTCTACAACTCTTCATGCTA+TGG | 0.494826 | 6:-23398614 | MsG0680031618.01.T01:CDS |
| CAATGTTGAGGTAAGGATAG+AGG | 0.500511 | 6:+23398987 | None:intergenic |
| GTATATAGTTTAAAAGCTGT+TGG | 0.503019 | 6:+23397755 | None:intergenic |
| ATGCTTTGGAATTCCAGAAA+AGG | 0.506923 | 6:+23398371 | None:intergenic |
| TCAAATAATAATTTCCTGGA+TGG | 0.514443 | 6:+23398779 | None:intergenic |
| AGAGTTGTAGAAAGCATAGT+TGG | 0.528565 | 6:+23398625 | None:intergenic |
| GCTGGTATGGTTAATTTGGT+GGG | 0.529232 | 6:+23398946 | None:intergenic |
| GAGATGCTATGAAAATCAAA+AGG | 0.539134 | 6:-23398819 | MsG0680031618.01.T01:CDS |
| CAAAGAACAATGTTGAGGTA+AGG | 0.540779 | 6:+23398980 | None:intergenic |
| TTGGAATTCCAGAAAAGGCA+TGG | 0.553652 | 6:+23398376 | None:intergenic |
| AAAGAAATCAGATATTTGGC+AGG | 0.557557 | 6:-23397798 | MsG0680031618.01.T01:CDS |
| TCCAACCCAAATGACTGCTA+TGG | 0.598350 | 6:+23398334 | None:intergenic |
| AAGAACAAAGAACAATGTTG+AGG | 0.619282 | 6:+23398975 | None:intergenic |
| TTTGGCAGGTAACTAAGCAA+AGG | 0.625832 | 6:-23397784 | MsG0680031618.01.T01:CDS |
| ATACCATCTTGTGTAACCAA+AGG | 0.660551 | 6:+23398532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGATTCAAAAAATAAAA+TGG | + | Chr6:23398314-23398333 | None:intergenic | 10.0% |
| !! | AAATTATTATTTGATTCATA+TGG | - | Chr6:23398022-23398041 | MsG0680031618.01.T01:intron | 10.0% |
| !!! | AATTAATAAACTTTTAGTAT+AGG | + | Chr6:23398821-23398840 | None:intergenic | 10.0% |
| !!! | ATTAATAAACTTTTAGTATA+GGG | + | Chr6:23398820-23398839 | None:intergenic | 10.0% |
| !!! | ATTAGAATTTTTAAGTAAAA+TGG | + | Chr6:23398906-23398925 | None:intergenic | 10.0% |
| !! | ATTAAATATGCAAAACTAAT+TGG | + | Chr6:23397939-23397958 | None:intergenic | 15.0% |
| !! | TTATAAAATATTTAGCCTAT+TGG | - | Chr6:23398645-23398664 | MsG0680031618.01.T01:CDS | 15.0% |
| !!! | TTAATAAACTTTTAGTATAG+GGG | + | Chr6:23398819-23398838 | None:intergenic | 15.0% |
| !! | AGTAACTTTGTTACATATAA+AGG | - | Chr6:23398143-23398162 | MsG0680031618.01.T01:intron | 20.0% |
| !! | ATTGTGAAGAAATTAAGTTT+GGG | + | Chr6:23397750-23397769 | None:intergenic | 20.0% |
| !! | TATATAGTTTAAAAGCTGTT+GGG | + | Chr6:23399039-23399058 | None:intergenic | 20.0% |
| !! | TGAATCAAATAATAATTTCC+TGG | + | Chr6:23398020-23398039 | None:intergenic | 20.0% |
| !!! | ACTAATTGGATATTTTTTGT+TGG | + | Chr6:23397925-23397944 | None:intergenic | 20.0% |
| !!! | AGTTTTGCATATTTAATTTC+AGG | - | Chr6:23397942-23397961 | MsG0680031618.01.T01:intron | 20.0% |
| !!! | TATTTAATTTCAGGTTCAAA+AGG | - | Chr6:23397951-23397970 | MsG0680031618.01.T01:intron | 20.0% |
| ! | AGAAATTAAGTTTGGGAATA+TGG | + | Chr6:23397743-23397762 | None:intergenic | 25.0% |
| ! | CCAATTTAGTCACTAAAATT+TGG | + | Chr6:23398861-23398880 | None:intergenic | 25.0% |
| ! | GAAATTAAGTTTGGGAATAT+GGG | + | Chr6:23397742-23397761 | None:intergenic | 25.0% |
| ! | GATTGTGAAGAAATTAAGTT+TGG | + | Chr6:23397751-23397770 | None:intergenic | 25.0% |
| ! | GTATATAGTTTAAAAGCTGT+TGG | + | Chr6:23399040-23399059 | None:intergenic | 25.0% |
| ! | TATTTGATTCATATGGATCA+TGG | - | Chr6:23398029-23398048 | MsG0680031618.01.T01:intron | 25.0% |
| ! | TCAAATAATAATTTCCTGGA+TGG | + | Chr6:23398016-23398035 | None:intergenic | 25.0% |
| ! | TGAATGAAATTCATATGCTT+TGG | + | Chr6:23398438-23398457 | None:intergenic | 25.0% |
| !! | ACAGCTTTTAAACTATATAC+AGG | - | Chr6:23399040-23399059 | MsG0680031618.01.T01:five_prime_UTR | 25.0% |
| !! | ATATTTTCCAGCAATAAAAG+AGG | - | Chr6:23398935-23398954 | MsG0680031618.01.T01:CDS | 25.0% |
| !! | TATTTTCCAGCAATAAAAGA+GGG | - | Chr6:23398936-23398955 | MsG0680031618.01.T01:CDS | 25.0% |
| !!! | CCAAATTTTAGTGACTAAAT+TGG | - | Chr6:23398858-23398877 | MsG0680031618.01.T01:CDS | 25.0% |
| !!! | TGGATATTTTTTGTTGGTAT+TGG | + | Chr6:23397919-23397938 | None:intergenic | 25.0% |
| !!! | TTTTGGAGGACTATATTTTA+AGG | + | Chr6:23397871-23397890 | None:intergenic | 25.0% |
| AAAGAAATCAGATATTTGGC+AGG | - | Chr6:23398994-23399013 | MsG0680031618.01.T01:CDS | 30.0% | |
| AAGAACAAAGAACAATGTTG+AGG | + | Chr6:23397820-23397839 | None:intergenic | 30.0% | |
| ACATCTCTATGATCTTTCTT+TGG | + | Chr6:23398059-23398078 | None:intergenic | 30.0% | |
| ATGGCATGATCCAATATTAA+AGG | + | Chr6:23398295-23398314 | None:intergenic | 30.0% | |
| GAAAATCAAAAGGTTGTTGA+AGG | - | Chr6:23397983-23398002 | MsG0680031618.01.T01:intron | 30.0% | |
| GAGATGCTATGAAAATCAAA+AGG | - | Chr6:23397973-23397992 | MsG0680031618.01.T01:intron | 30.0% | |
| GCCAAAAGAAATCAGATATT+TGG | - | Chr6:23398990-23399009 | MsG0680031618.01.T01:CDS | 30.0% | |
| TCTTCTTAGGAGTTGTAAAT+GGG | - | Chr6:23398205-23398224 | MsG0680031618.01.T01:intron | 30.0% | |
| TTCTTCTTAGGAGTTGTAAA+TGG | - | Chr6:23398204-23398223 | MsG0680031618.01.T01:intron | 30.0% | |
| ! | CTTCACAATCATCTCTAAAA+TGG | - | Chr6:23397761-23397780 | MsG0680031618.01.T01:CDS | 30.0% |
| ! | GAAGCCAATTTTTATAGATC+CGG | - | Chr6:23398958-23398977 | MsG0680031618.01.T01:CDS | 30.0% |
| ! | GCCAAATATCTGATTTCTTT+TGG | + | Chr6:23398994-23399013 | None:intergenic | 30.0% |
| ! | TAAATATTGACTGAGCCAAT+AGG | + | Chr6:23398663-23398682 | None:intergenic | 30.0% |
| !! | AGTCTCTAAAATTACCTCAA+AGG | - | Chr6:23398682-23398701 | MsG0680031618.01.T01:CDS | 30.0% |
| !!! | ACTATATTTTAAGGCTGGTA+TGG | + | Chr6:23397862-23397881 | None:intergenic | 30.0% |
| AGAGCCGGATCTATAAAAAT+TGG | + | Chr6:23398965-23398984 | None:intergenic | 35.0% | |
| ATACCATCTTGTGTAACCAA+AGG | + | Chr6:23398263-23398282 | None:intergenic | 35.0% | |
| ATGCTATGGCAATTCTTCTT+AGG | - | Chr6:23398192-23398211 | MsG0680031618.01.T01:intron | 35.0% | |
| ATGTTGAAGGTTGTGTTCAT+TGG | + | Chr6:23397894-23397913 | None:intergenic | 35.0% | |
| ATTCACCATAGCAGTCATTT+GGG | - | Chr6:23398453-23398472 | MsG0680031618.01.T01:intron | 35.0% | |
| CAAAGAACAATGTTGAGGTA+AGG | + | Chr6:23397815-23397834 | None:intergenic | 35.0% | |
| CATGGATCAGATCTGAAAAT+TGG | + | Chr6:23398401-23398420 | None:intergenic | 35.0% | |
| TAAGGCTGGTATGGTTAATT+TGG | + | Chr6:23397853-23397872 | None:intergenic | 35.0% | |
| TAGTGCATCTGATTATCCTT+TGG | - | Chr6:23398244-23398263 | MsG0680031618.01.T01:intron | 35.0% | |
| TATCCTTTGGTTACACAAGA+TGG | - | Chr6:23398257-23398276 | MsG0680031618.01.T01:intron | 35.0% | |
| TCATCACATTAGTTCCTTTG+AGG | + | Chr6:23398699-23398718 | None:intergenic | 35.0% | |
| TTAGGAGTTGTAAATGGGAT+TGG | - | Chr6:23398210-23398229 | MsG0680031618.01.T01:intron | 35.0% | |
| TTCTACAACTCTTCATGCTA+TGG | - | Chr6:23398178-23398197 | MsG0680031618.01.T01:intron | 35.0% | |
| TTGGTCAAGTAGGAAATGTT+TGG | - | Chr6:23398108-23398127 | MsG0680031618.01.T01:intron | 35.0% | |
| TTTCCTACTTGACCAAAAAC+AGG | + | Chr6:23398104-23398123 | None:intergenic | 35.0% | |
| TTTGGTTACACAAGATGGTA+TGG | - | Chr6:23398262-23398281 | MsG0680031618.01.T01:intron | 35.0% | |
| ! | AGAGTTGTAGAAAGCATAGT+TGG | + | Chr6:23398170-23398189 | None:intergenic | 35.0% |
| ! | GTGACTAATGAACCTGTTTT+TGG | - | Chr6:23398089-23398108 | MsG0680031618.01.T01:intron | 35.0% |
| !! | ATGCTTTGGAATTCCAGAAA+AGG | + | Chr6:23398424-23398443 | None:intergenic | 35.0% |
| !!! | AAGGTTGTGTTCATTGGTTT+TGG | + | Chr6:23397888-23397907 | None:intergenic | 35.0% |
| CAATGTTGAGGTAAGGATAG+AGG | + | Chr6:23397808-23397827 | None:intergenic | 40.0% | |
| CATTCACCATAGCAGTCATT+TGG | - | Chr6:23398452-23398471 | MsG0680031618.01.T01:intron | 40.0% | |
| TGGTGAGTGGCCTTTAATAT+TGG | - | Chr6:23398282-23398301 | MsG0680031618.01.T01:intron | 40.0% | |
| TTGGAATTCCAGAAAAGGCA+TGG | + | Chr6:23398419-23398438 | None:intergenic | 40.0% | |
| TTTGGCAGGTAACTAAGCAA+AGG | - | Chr6:23399008-23399027 | MsG0680031618.01.T01:CDS | 40.0% | |
| ! | GCTGGTATGGTTAATTTGGT+GGG | + | Chr6:23397849-23397868 | None:intergenic | 40.0% |
| ! | GTTGGTATTGGAGATGTTGA+AGG | + | Chr6:23397907-23397926 | None:intergenic | 40.0% |
| !! | TTCTTTTGGCTGTAAAGAGC+CGG | + | Chr6:23398980-23398999 | None:intergenic | 40.0% |
| !!! | GAACCTGTTTTTGGTCAAGT+AGG | - | Chr6:23398098-23398117 | MsG0680031618.01.T01:intron | 40.0% |
| !!! | GGAGGACTATATTTTAAGGC+TGG | + | Chr6:23397867-23397886 | None:intergenic | 40.0% |
| !!! | GTTGTGTTCATTGGTTTTGG+AGG | + | Chr6:23397885-23397904 | None:intergenic | 40.0% |
| ACACAAGATGGTATGGTGAG+TGG | - | Chr6:23398269-23398288 | MsG0680031618.01.T01:intron | 45.0% | |
| ACCATAGCAGTCATTTGGGT+TGG | - | Chr6:23398457-23398476 | MsG0680031618.01.T01:intron | 45.0% | |
| TCCAACCCAAATGACTGCTA+TGG | + | Chr6:23398461-23398480 | None:intergenic | 45.0% | |
| ! | AGGGGCATAGTACAAGTGAT+TGG | + | Chr6:23398801-23398820 | None:intergenic | 45.0% |
| ! | GATCTGATCCATGCCTTTTC+TGG | - | Chr6:23398408-23398427 | MsG0680031618.01.T01:intron | 45.0% |
| ! | GGCTGGTATGGTTAATTTGG+TGG | + | Chr6:23397850-23397869 | None:intergenic | 45.0% |
| ! | TGGCTTCCCTCTTTTATTGC+TGG | + | Chr6:23398945-23398964 | None:intergenic | 45.0% |
| ! | TTGAAGGCTTTGTACCATCC+AGG | - | Chr6:23397999-23398018 | MsG0680031618.01.T01:intron | 45.0% |
| !!! | AATTAAATTCTATAATTTTA+GGG | + | Chr6:23398592-23398611 | None:intergenic | 5.0% |
| !!! | TAATTAAATTCTATAATTTT+AGG | + | Chr6:23398593-23398612 | None:intergenic | 5.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 23397730 | 23399084 | 23397730 | ID=MsG0680031618.01;Name=MsG0680031618.01 |
| Chr6 | mRNA | 23397730 | 23399084 | 23397730 | ID=MsG0680031618.01.T01;Parent=MsG0680031618.01;Name=MsG0680031618.01.T01;_AED=0.44;_eAED=0.44;_QI=50|1|0.66|1|1|1|3|0|237 |
| Chr6 | exon | 23397730 | 23397868 | 23397730 | ID=MsG0680031618.01.T01:exon:14589;Parent=MsG0680031618.01.T01 |
| Chr6 | exon | 23398330 | 23398405 | 23398330 | ID=MsG0680031618.01.T01:exon:14588;Parent=MsG0680031618.01.T01 |
| Chr6 | exon | 23398536 | 23399084 | 23398536 | ID=MsG0680031618.01.T01:exon:14587;Parent=MsG0680031618.01.T01 |
| Chr6 | five_prime_UTR | 23399035 | 23399084 | 23399035 | ID=MsG0680031618.01.T01:five_prime_utr;Parent=MsG0680031618.01.T01 |
| Chr6 | CDS | 23398536 | 23399034 | 23398536 | ID=MsG0680031618.01.T01:cds;Parent=MsG0680031618.01.T01 |
| Chr6 | CDS | 23398330 | 23398405 | 23398330 | ID=MsG0680031618.01.T01:cds;Parent=MsG0680031618.01.T01 |
| Chr6 | CDS | 23397730 | 23397868 | 23397730 | ID=MsG0680031618.01.T01:cds;Parent=MsG0680031618.01.T01 |
| Gene Sequence |
| Protein sequence |
