AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014495.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014495.01.T01 MTR_3g058570 70.335 418 84 4 67 473 1 389 0.0 555
MsG0380014495.01.T01 MTR_3g051060 45.565 496 208 12 1 475 287 741 1.41e-129 393
MsG0380014495.01.T01 MTR_5g085340 47.404 443 219 7 37 473 315 749 5.24e-125 381
MsG0380014495.01.T01 MTR_5g085350 46.032 441 207 6 37 473 315 728 4.20e-117 360
MsG0380014495.01.T01 MTR_5g085350 45.578 441 222 5 37 473 315 741 5.91e-117 360
MsG0380014495.01.T01 MTR_5g085360 36.383 470 217 9 37 471 316 738 2.08e-84 275
MsG0380014495.01.T01 MTR_2g020510 42.089 316 176 2 158 472 380 689 3.40e-77 255
MsG0380014495.01.T01 MTR_3g050500 36.986 438 242 10 55 467 300 728 2.73e-76 253
MsG0380014495.01.T01 MTR_2g020470 38.658 313 165 3 161 472 385 671 3.34e-67 228
MsG0380014495.01.T01 MTR_2g020450 41.534 313 175 3 161 472 386 691 2.38e-66 226
MsG0380014495.01.T01 MTR_2g438400 32.203 295 189 5 168 459 255 541 5.02e-42 157
MsG0380014495.01.T01 MTR_2g438440 33.220 295 186 5 168 459 396 682 3.94e-41 156
MsG0380014495.01.T01 MTR_2g438700 30.872 298 196 5 168 462 399 689 1.35e-40 155
MsG0380014495.01.T01 MTR_3g055310 31.010 287 188 4 168 452 57 335 1.17e-39 146
MsG0380014495.01.T01 MTR_2g438740 30.233 301 200 3 162 459 270 563 1.82e-39 150
MsG0380014495.01.T01 MTR_2g438720 30.508 295 195 5 168 459 401 688 2.70e-39 151
MsG0380014495.01.T01 MTR_3g055310 31.010 287 188 4 168 452 120 398 3.97e-39 147
MsG0380014495.01.T01 MTR_3g055310 31.010 287 188 4 168 452 172 450 7.00e-39 147
MsG0380014495.01.T01 MTR_3g055310 31.010 287 188 4 168 452 200 478 1.07e-38 147
MsG0380014495.01.T01 MTR_3g055310 31.010 287 188 4 168 452 198 476 1.17e-38 147
MsG0380014495.01.T01 MTR_2g017930 34.951 309 183 5 168 468 359 657 1.30e-38 149
MsG0380014495.01.T01 MTR_3g055310 31.010 287 188 4 168 452 225 503 2.51e-38 146
MsG0380014495.01.T01 MTR_5g028190 29.431 299 204 4 167 463 239 532 1.29e-37 144
MsG0380014495.01.T01 MTR_5g091220 31.293 294 192 5 168 459 313 598 1.23e-36 142
MsG0380014495.01.T01 MTR_2g438640 30.169 295 195 5 168 459 401 687 5.44e-36 142
MsG0380014495.01.T01 MTR_3g455790 30.605 281 185 4 168 446 308 580 9.70e-34 134
MsG0380014495.01.T01 MTR_2g438760 28.000 325 212 7 145 461 250 560 2.15e-32 130
MsG0380014495.01.T01 MTR_5g028130 27.063 303 208 5 167 463 41 336 4.25e-32 125
MsG0380014495.01.T01 MTR_2g438640 29.492 295 171 5 168 459 401 661 9.63e-32 129
MsG0380014495.01.T01 MTR_5g028450 31.788 302 187 7 168 460 1 292 4.47e-30 119
MsG0380014495.01.T01 MTR_3g452020 28.431 306 201 6 168 466 133 427 5.96e-28 115
MsG0380014495.01.T01 MTR_3g452020 28.136 295 199 5 168 460 309 592 1.06e-27 117
MsG0380014495.01.T01 MTR_5g028930 25.660 265 189 3 167 429 320 578 2.96e-23 103
MsG0380014495.01.T01 MTR_6g017215 28.108 185 132 1 273 457 6 189 1.98e-22 96.3
MsG0380014495.01.T01 MTR_2g438640 30.978 184 125 2 276 459 403 584 3.03e-22 100
MsG0380014495.01.T01 MTR_5g028110 31.579 152 100 4 314 463 24 173 1.36e-15 75.1
MsG0380014495.01.T01 MTR_2g438470 39.496 119 63 5 237 350 384 498 1.59e-15 79.3
MsG0380014495.01.T01 MTR_5g028690 28.846 156 107 2 267 420 35 188 2.41e-14 73.2
MsG0380014495.01.T01 MTR_1g113760 24.837 306 206 7 167 455 239 537 1.49e-13 73.2
MsG0380014495.01.T01 MTR_5g028840 27.397 146 106 0 275 420 4 149 6.55e-12 65.1
MsG0380014495.01.T01 MTR_2g438580 39.726 73 43 1 294 366 9 80 3.66e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014495.01.T01 AT5G35810 32.595 316 193 7 171 476 38 343 5.21e-44 158
MsG0380014495.01.T01 AT3G18670 30.128 312 206 5 167 475 292 594 2.00e-37 145
MsG0380014495.01.T01 AT3G18670 30.128 312 206 5 167 475 347 649 2.47e-37 145
MsG0380014495.01.T01 AT5G04700 30.745 322 201 7 149 459 342 652 3.35e-33 133
MsG0380014495.01.T01 AT3G54065 31.019 216 143 1 253 462 2 217 2.73e-31 120
MsG0380014495.01.T01 AT5G04730 28.896 308 197 7 167 465 297 591 2.82e-31 127
MsG0380014495.01.T01 AT5G04690 28.363 342 224 9 143 477 297 624 4.44e-30 124
MsG0380014495.01.T01 AT5G04690 28.363 342 224 9 143 477 317 644 4.86e-30 124
MsG0380014495.01.T01 AT5G04690 28.696 345 224 10 140 477 329 658 4.96e-30 124
MsG0380014495.01.T01 AT5G04680 29.283 321 205 8 149 454 358 671 8.93e-24 105
MsG0380014495.01.T01 AT5G04680 28.834 326 210 8 149 459 315 633 9.33e-24 105
MsG0380014495.01.T01 AT5G04680 28.834 326 210 8 149 459 329 647 9.84e-24 105
MsG0380014495.01.T01 AT5G04680 29.283 321 205 8 149 454 206 519 1.21e-23 104

Find 82 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGAACCTGAAGCAATTT+TGG 0.129756 3:+55637944 MsG0380014495.01.T01:CDS
ATCTATATCCTTGGCATTTC+AGG 0.167178 3:+55637079 MsG0380014495.01.T01:CDS
TTCAGATGGCATTGCTATAT+TGG 0.196245 3:-55636999 None:intergenic
TTCCATGTTAACATCGTATA+TGG 0.212428 3:-55638135 None:intergenic
AATCCCAAAAGTAGTTTCTT+TGG 0.225787 3:-55639131 None:intergenic
ACTCTCATCTCTTGTTGATT+TGG 0.252363 3:-55637383 None:intergenic
TGTCTCTCTACCATATCTTT+AGG 0.254207 3:-55636965 None:intergenic
CGCCCCTTATCACTTGTCTT+TGG 0.263214 3:-55639344 None:intergenic
CCAATGTCATTGAGGCATTA+AGG 0.277228 3:+55638198 MsG0380014495.01.T01:CDS
TTTGCCAAAGAAACTACTTT+TGG 0.291810 3:+55639127 MsG0380014495.01.T01:CDS
CTTTACATTGATCTTCTTAG+AGG 0.300527 3:+55639305 MsG0380014495.01.T01:CDS
TCACTTTCCAAAATTGCTTC+AGG 0.306134 3:-55637951 None:intergenic
ACTTATAAGTGAAGCAATTT+CGG 0.307445 3:+55637998 MsG0380014495.01.T01:CDS
TTTGCTTTGTCATCCGTAAT+TGG 0.320194 3:+55639023 MsG0380014495.01.T01:CDS
GTAACAATCTCGATCACTTT+TGG 0.328624 3:-55638315 None:intergenic
TCAGATGGCATTGCTATATT+GGG 0.353151 3:-55636998 None:intergenic
AGGGGCGAAAGGATTTATAA+AGG 0.375024 3:+55639360 MsG0380014495.01.T01:CDS
AAAACTATGCTACATGCCTT+TGG 0.380319 3:+55637038 MsG0380014495.01.T01:CDS
ATGTTCACTGGTTTCTGCTC+TGG 0.383560 3:+55639182 MsG0380014495.01.T01:CDS
CCAGGCTTTCCTTTCAATGA+TGG 0.388765 3:-55638990 None:intergenic
ATGAATCAGATACCTTGATC+TGG 0.396970 3:-55637433 None:intergenic
CGCATCATCAAGCACTGTGC+CGG 0.401383 3:+55638941 MsG0380014495.01.T01:CDS
TTTCTTCCTCATCCACCCCT+TGG 0.401557 3:-55638268 None:intergenic
TACTTGTAGCAGTTGAGAAC+AGG 0.405850 3:+55638171 MsG0380014495.01.T01:CDS
GGTGGCAACAACGGTGAAAC+AGG 0.406357 3:+55638963 MsG0380014495.01.T01:CDS
ATCACTTGTCTTTGGCACTT+TGG 0.407011 3:-55639336 None:intergenic
ATCTCTTGTTGATTTGGCAT+CGG 0.408834 3:-55637377 None:intergenic
GTGCCAAAGACAAGTGATAA+GGG 0.412267 3:+55639341 MsG0380014495.01.T01:CDS
TCCATTGTTGCCATGTTCAC+TGG 0.413454 3:+55639170 MsG0380014495.01.T01:CDS
GATCGAGATTGTTACAAATC+TGG 0.413688 3:+55638323 MsG0380014495.01.T01:CDS
GTAGTAGCAGCACAACTTGC+TGG 0.413960 3:+55638909 MsG0380014495.01.T01:CDS
AGATGAAGCAAGAGCACAAA+TGG 0.413972 3:+55637299 MsG0380014495.01.T01:CDS
AGAGAAACAAAGACCAATTA+CGG 0.448501 3:-55639036 None:intergenic
TTTCAGTCAAAATTGCTCTC+TGG 0.457231 3:-55638025 None:intergenic
TGATATGCCACATCATTTCA+AGG 0.462301 3:-55638352 None:intergenic
TCACTTGCTTCCCTGTGACT+TGG 0.466284 3:+55639261 MsG0380014495.01.T01:CDS
AAAGCAAATGCTTCGAATCC+AGG 0.468816 3:-55639008 None:intergenic
AAATGGCATAGTTGAAATAG+TGG 0.476650 3:+55638085 MsG0380014495.01.T01:CDS
TTTGCATACATCTATATCCT+TGG 0.476858 3:+55637070 MsG0380014495.01.T01:CDS
GGAGCAGTACATTAAACAAC+TGG 0.484471 3:+55638758 MsG0380014495.01.T01:intron
CCATCATTGAAAGGAAAGCC+TGG 0.486602 3:+55638990 MsG0380014495.01.T01:CDS
TAGCAATGCCATCTGAAGAT+AGG 0.486644 3:+55637005 MsG0380014495.01.T01:CDS
TTCGAGAAGTGACTATAGAA+AGG 0.490891 3:-55639079 None:intergenic
AGTGCCAAAGACAAGTGATA+AGG 0.491616 3:+55639340 MsG0380014495.01.T01:CDS
GTTTCACCGTTGTTGCCACC+CGG 0.495119 3:-55638960 None:intergenic
ATTACTTCTAATGCTGCAAA+TGG 0.509463 3:+55636584 MsG0380014495.01.T01:CDS
TTTGTTTACAGCCCAGATCA+AGG 0.510535 3:+55637421 MsG0380014495.01.T01:CDS
CCTTAATGCCTCAATGACAT+TGG 0.514061 3:-55638198 None:intergenic
GTTCCCAAGTACGATTCAAA+AGG 0.514095 3:-55637355 None:intergenic
TCTAATCCAAGGGGTGGATG+AGG 0.514799 3:+55638262 MsG0380014495.01.T01:CDS
AAATGATGTGGCATATCAAA+TGG 0.530290 3:+55638357 MsG0380014495.01.T01:CDS
ACCAGTGAACATGGCAACAA+TGG 0.532260 3:-55639171 None:intergenic
TGAATCAGATACCTTGATCT+GGG 0.535747 3:-55637432 None:intergenic
TTTCTAACTGTGAAATGCGC+TGG 0.538087 3:-55638783 None:intergenic
GCATCATCAAGCACTGTGCC+GGG 0.538954 3:+55638942 MsG0380014495.01.T01:CDS
TGATGCTAGTGCGTGGCTCA+AGG 0.544483 3:+55638866 MsG0380014495.01.T01:CDS
ATATTTGATAATCTAATCCA+AGG 0.554671 3:+55638251 MsG0380014495.01.T01:CDS
GATATGCCACATCATTTCAA+GGG 0.564986 3:-55638351 None:intergenic
AGCAAGTGAATATATAAATG+AGG 0.568815 3:-55639247 None:intergenic
GACAAGTGATAAGGGGCGAA+AGG 0.569870 3:+55639349 MsG0380014495.01.T01:CDS
GCTACTGCATACCAAGTCAC+AGG 0.572239 3:-55639272 None:intergenic
TATTTGATAATCTAATCCAA+GGG 0.573799 3:+55638252 MsG0380014495.01.T01:CDS
TTAACATCGTATATGGAACT+TGG 0.574894 3:-55638128 None:intergenic
CACAGTGCTTGATGATGCGA+AGG 0.578147 3:-55638937 None:intergenic
GTGCTGCCCTTGAAATGATG+TGG 0.580242 3:+55638345 MsG0380014495.01.T01:CDS
ACAGGTGAACCATCATTGAA+AGG 0.586050 3:+55638981 MsG0380014495.01.T01:CDS
AGAGCAGAAACCAGTGAACA+TGG 0.594503 3:-55639180 None:intergenic
GGAAAAGACCTATCTTCAGA+TGG 0.595754 3:-55637013 None:intergenic
GTGGCATATCAAATGGTTTG+AGG 0.600907 3:+55638364 MsG0380014495.01.T01:CDS
CAGGAGAACCAATGTCATTG+AGG 0.602283 3:+55638190 MsG0380014495.01.T01:CDS
GACACTTACCTGAAATGCCA+AGG 0.603902 3:-55637087 None:intergenic
ACTGTGCCGGGTGGCAACAA+CGG 0.606000 3:+55638954 MsG0380014495.01.T01:CDS
TTCCATATACGATGTTAACA+TGG 0.609214 3:+55638133 MsG0380014495.01.T01:CDS
TGATAATCTAATCCAAGGGG+TGG 0.630497 3:+55638256 MsG0380014495.01.T01:CDS
TGCCAAAGACAAGTGATAAG+GGG 0.632872 3:+55639342 MsG0380014495.01.T01:CDS
ATAAACTTGTCCAGATGCTG+CGG 0.638927 3:+55636552 None:intergenic
CTACTGCATACCAAGTCACA+GGG 0.653286 3:-55639271 None:intergenic
AAGCAAGAGCACAAATGGAG+TGG 0.656446 3:+55637304 MsG0380014495.01.T01:CDS
TCATCAAGCACTGTGCCGGG+TGG 0.678616 3:+55638945 MsG0380014495.01.T01:CDS
ATTTGATAATCTAATCCAAG+GGG 0.681888 3:+55638253 MsG0380014495.01.T01:CDS
TGCAGGAGATAACAACAATG+AGG 0.695234 3:+55637902 MsG0380014495.01.T01:intron
TGATAAATGATGCTAGTGCG+TGG 0.730360 3:+55638859 MsG0380014495.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTTTAAAAAATCTAT+TGG - Chr3:55636695-55636714 None:intergenic 10.0%
!! AAAAAATAAGATTGAAAGTT+AGG + Chr3:55636667-55636686 MsG0380014495.01.T01:intron 15.0%
!!! AAATCAATTTTGTAATTTTG+TGG - Chr3:55639110-55639129 None:intergenic 15.0%
!!! AACTTTCAATCTTATTTTTT+CGG - Chr3:55636667-55636686 None:intergenic 15.0%
!!! ATTAATGACCTTTTAATTAT+GGG + Chr3:55637702-55637721 MsG0380014495.01.T01:intron 15.0%
!! TACATTACAGTTTACATATT+AGG + Chr3:55636611-55636630 MsG0380014495.01.T01:intron 20.0%
!! TCTTAAATATAAGTGGAAAT+TGG - Chr3:55637497-55637516 None:intergenic 20.0%
!! TTTATTCTCAAAATGGTATA+AGG - Chr3:55636850-55636869 None:intergenic 20.0%
!!! AGATCAAACATTCTAAAATA+AGG + Chr3:55638472-55638491 MsG0380014495.01.T01:intron 20.0%
!!! ATATTTGATAATCTAATCCA+AGG + Chr3:55638251-55638270 MsG0380014495.01.T01:CDS 20.0%
!!! GATTAATGACCTTTTAATTA+TGG + Chr3:55637701-55637720 MsG0380014495.01.T01:intron 20.0%
!!! GTATTCAAAATTTGCTTAAA+GGG + Chr3:55637260-55637279 MsG0380014495.01.T01:intron 20.0%
!!! TATTCAAAATTTGCTTAAAG+GGG + Chr3:55637261-55637280 MsG0380014495.01.T01:intron 20.0%
!!! TATTTGATAATCTAATCCAA+GGG + Chr3:55638252-55638271 MsG0380014495.01.T01:CDS 20.0%
!!! TGACTTTTTTATTCTCAAAA+TGG - Chr3:55636857-55636876 None:intergenic 20.0%
!!! TGTATTCAAAATTTGCTTAA+AGG + Chr3:55637259-55637278 MsG0380014495.01.T01:intron 20.0%
!!! TTTTCTCTAAAGAAAATGAT+AGG + Chr3:55636884-55636903 MsG0380014495.01.T01:intron 20.0%
!!! TTTTGAAAAGGACAATAAAA+TGG + Chr3:55638226-55638245 MsG0380014495.01.T01:CDS 20.0%
!!! TTTTTTTCTTTCATCTGTAT+AGG + Chr3:55637144-55637163 MsG0380014495.01.T01:intron 20.0%
! AATGAGATGAGTAATTCTAA+GGG + Chr3:55636738-55636757 MsG0380014495.01.T01:intron 25.0%
! ACACATACAAATGAAAAAAC+AGG - Chr3:55637242-55637261 None:intergenic 25.0%
! ACTTATAAGTGAAGCAATTT+CGG + Chr3:55637998-55638017 MsG0380014495.01.T01:CDS 25.0%
! AGCAAGTGAATATATAAATG+AGG - Chr3:55639250-55639269 None:intergenic 25.0%
! ATAACATAAATGAAACTTGC+AGG + Chr3:55637885-55637904 MsG0380014495.01.T01:intron 25.0%
! ATGCAAACTTAAAAAACCAA+AGG - Chr3:55637057-55637076 None:intergenic 25.0%
! TCTGTATATTAGCAATATCT+TGG + Chr3:55636776-55636795 MsG0380014495.01.T01:intron 25.0%
! TGAGAATAAAAAAGTCAGTA+TGG + Chr3:55636860-55636879 MsG0380014495.01.T01:intron 25.0%
!! ATTTGATAATCTAATCCAAG+GGG + Chr3:55638253-55638272 MsG0380014495.01.T01:CDS 25.0%
!! CCAAAAACAATTGTTTGTTA+TGG - Chr3:55638620-55638639 None:intergenic 25.0%
!! CCATAACAAACAATTGTTTT+TGG + Chr3:55638617-55638636 MsG0380014495.01.T01:intron 25.0%
!! TCATTTCGATTTGATCATAA+GGG + Chr3:55637527-55637546 MsG0380014495.01.T01:intron 25.0%
!! TTTAGAATGTTTGATCTTGA+TGG - Chr3:55638469-55638488 None:intergenic 25.0%
!!! AAGTTAAACTATGTTTTTGC+AGG + Chr3:55636941-55636960 MsG0380014495.01.T01:intron 25.0%
!!! ACAAACAATTGTTTTTGGTT+TGG + Chr3:55638622-55638641 MsG0380014495.01.T01:intron 25.0%
!!! ATTAAGGAAACGTTTTGAAA+AGG + Chr3:55638214-55638233 MsG0380014495.01.T01:CDS 25.0%
!!! ATTTTTTCGGATTTTTGAAC+AGG - Chr3:55636654-55636673 None:intergenic 25.0%
!!! CAAACAATTGTTTTTGGTTT+GGG + Chr3:55638623-55638642 MsG0380014495.01.T01:intron 25.0%
!!! TCTCTAGTCTTAAATATAAG+TGG - Chr3:55637504-55637523 None:intergenic 25.0%
!!! TTTTTTCGGATTTTTGAACA+GGG - Chr3:55636653-55636672 None:intergenic 25.0%
!!! TTTTTTGTCATTTGATCAGA+CGG + Chr3:55636820-55636839 MsG0380014495.01.T01:intron 25.0%
AAATGATGTGGCATATCAAA+TGG + Chr3:55638357-55638376 MsG0380014495.01.T01:CDS 30.0%
AAATGGCATAGTTGAAATAG+TGG + Chr3:55638085-55638104 MsG0380014495.01.T01:CDS 30.0%
AACGGTTGTAAAACAATCAT+TGG - Chr3:55637665-55637684 None:intergenic 30.0%
AATCCCAAAAGTAGTTTCTT+TGG - Chr3:55639134-55639153 None:intergenic 30.0%
AGAGAAACAAAGACCAATTA+CGG - Chr3:55639039-55639058 None:intergenic 30.0%
ATTACTTCTAATGCTGCAAA+TGG + Chr3:55636584-55636603 MsG0380014495.01.T01:CDS 30.0%
CAACCTAAAAAAACAAGTGT+AGG - Chr3:55637174-55637193 None:intergenic 30.0%
CAATGAGATGAGTAATTCTA+AGG + Chr3:55636737-55636756 MsG0380014495.01.T01:intron 30.0%
CTTAGAATTACTCATCTCAT+TGG - Chr3:55636739-55636758 None:intergenic 30.0%
CTTTACATTGATCTTCTTAG+AGG + Chr3:55639305-55639324 MsG0380014495.01.T01:CDS 30.0%
GTCAATCAATCAAGATTAGA+GGG - Chr3:55638529-55638548 None:intergenic 30.0%
TATCCTTATTGATCTAGAGA+AGG + Chr3:55637111-55637130 MsG0380014495.01.T01:intron 30.0%
TGACTAAAACAATCATTGAC+TGG + Chr3:55637757-55637776 MsG0380014495.01.T01:intron 30.0%
TTAACATCGTATATGGAACT+TGG - Chr3:55638131-55638150 None:intergenic 30.0%
TTCCATATACGATGTTAACA+TGG + Chr3:55638133-55638152 MsG0380014495.01.T01:CDS 30.0%
TTCCATGTTAACATCGTATA+TGG - Chr3:55638138-55638157 None:intergenic 30.0%
TTTGCATACATCTATATCCT+TGG + Chr3:55637070-55637089 MsG0380014495.01.T01:CDS 30.0%
! AATCCTTTTGAATCGTACTT+GGG + Chr3:55637352-55637371 MsG0380014495.01.T01:CDS 30.0%
! ACACAATGTGCTTGTATTTT+TGG - Chr3:55639226-55639245 None:intergenic 30.0%
! AGGTATCTGATTCATTTTAG+TGG + Chr3:55637441-55637460 MsG0380014495.01.T01:intron 30.0%
! ATGAAGTGCCCATAATTAAA+AGG - Chr3:55637713-55637732 None:intergenic 30.0%
! GTCATTTCGATTTGATCATA+AGG + Chr3:55637526-55637545 MsG0380014495.01.T01:intron 30.0%
! TTTGCCAAAGAAACTACTTT+TGG + Chr3:55639127-55639146 MsG0380014495.01.T01:CDS 30.0%
!! CAATTGTTTGTTATGGTCAA+TGG - Chr3:55638613-55638632 None:intergenic 30.0%
!! CGTGGTTGTTATTGTTTTAT+GGG + Chr3:55637210-55637229 MsG0380014495.01.T01:intron 30.0%
!! GATTGTTTTACAACCGTTTT+TGG + Chr3:55637667-55637686 MsG0380014495.01.T01:intron 30.0%
!! GTGGTTGTTATTGTTTTATG+GGG + Chr3:55637211-55637230 MsG0380014495.01.T01:intron 30.0%
!! TCGTGGTTGTTATTGTTTTA+TGG + Chr3:55637209-55637228 MsG0380014495.01.T01:intron 30.0%
!! TTGCCAAAGAAACTACTTTT+GGG + Chr3:55639128-55639147 MsG0380014495.01.T01:CDS 30.0%
!! TTTGTTATGGTCAATGGTTT+TGG - Chr3:55638607-55638626 None:intergenic 30.0%
!!! AATTGTTTTTGGTTTGGGTT+TGG + Chr3:55638628-55638647 MsG0380014495.01.T01:intron 30.0%
!!! AGTCAATGATTGTTTTAGTC+AGG - Chr3:55637758-55637777 None:intergenic 30.0%
!!! ATTGTTTTTGGTTTGGGTTT+GGG + Chr3:55638629-55638648 MsG0380014495.01.T01:intron 30.0%
!!! CTATTTTAGTGTTCTGAGTT+CGG - Chr3:55638663-55638682 None:intergenic 30.0%
AAAACTATGCTACATGCCTT+TGG + Chr3:55637038-55637057 MsG0380014495.01.T01:CDS 35.0%
ACAACCACGATAGTCAAAAT+AGG - Chr3:55637199-55637218 None:intergenic 35.0%
AGACCTTCTCTAGATCAATA+AGG - Chr3:55637117-55637136 None:intergenic 35.0%
ATCTATATCCTTGGCATTTC+AGG + Chr3:55637079-55637098 MsG0380014495.01.T01:CDS 35.0%
ATGAATCAGATACCTTGATC+TGG - Chr3:55637436-55637455 None:intergenic 35.0%
CGTGAATGAGTTAGTAAGTT+AGG + Chr3:55638566-55638585 MsG0380014495.01.T01:intron 35.0%
GATATGCCACATCATTTCAA+GGG - Chr3:55638354-55638373 None:intergenic 35.0%
GATCGAGATTGTTACAAATC+TGG + Chr3:55638323-55638342 MsG0380014495.01.T01:CDS 35.0%
GGTCAATCAATCAAGATTAG+AGG - Chr3:55638530-55638549 None:intergenic 35.0%
TCACGCAATCAAAATATCAG+TGG - Chr3:55638551-55638570 None:intergenic 35.0%
TCACTTGAGTTCTCCAAAAA+CGG - Chr3:55637683-55637702 None:intergenic 35.0%
TCACTTTCCAAAATTGCTTC+AGG - Chr3:55637954-55637973 None:intergenic 35.0%
TCAGATGGCATTGCTATATT+GGG - Chr3:55637001-55637020 None:intergenic 35.0%
TGAATCAGATACCTTGATCT+GGG - Chr3:55637435-55637454 None:intergenic 35.0%
TGATATGCCACATCATTTCA+AGG - Chr3:55638355-55638374 None:intergenic 35.0%
TGTCTCTCTACCATATCTTT+AGG - Chr3:55636968-55636987 None:intergenic 35.0%
TTCAGATGGCATTGCTATAT+TGG - Chr3:55637002-55637021 None:intergenic 35.0%
TTCGAGAAGTGACTATAGAA+AGG - Chr3:55639082-55639101 None:intergenic 35.0%
TTGTTTAATGTACTGCTCCA+TGG - Chr3:55638757-55638776 None:intergenic 35.0%
TTTCAGTCAAAATTGCTCTC+TGG - Chr3:55638028-55638047 None:intergenic 35.0%
TTTGCTTTGTCATCCGTAAT+TGG + Chr3:55639023-55639042 MsG0380014495.01.T01:CDS 35.0%
! ACTCTCATCTCTTGTTGATT+TGG - Chr3:55637386-55637405 None:intergenic 35.0%
! ACTTGAACCTGAAGCAATTT+TGG + Chr3:55637944-55637963 MsG0380014495.01.T01:CDS 35.0%
! CAAGTTTTGCAGAAGTCTTT+GGG - Chr3:55637929-55637948 None:intergenic 35.0%
! GAATCCTTTTGAATCGTACT+TGG + Chr3:55637351-55637370 MsG0380014495.01.T01:CDS 35.0%
! GTAACAATCTCGATCACTTT+TGG - Chr3:55638318-55638337 None:intergenic 35.0%
! GTCTTATCCTTCTGATTTTC+CGG - Chr3:55637829-55637848 None:intergenic 35.0%
! TCAAGTTTTGCAGAAGTCTT+TGG - Chr3:55637930-55637949 None:intergenic 35.0%
! TTTTGCAGGACCTAAAGATA+TGG + Chr3:55636955-55636974 MsG0380014495.01.T01:intron 35.0%
!! ATCTCTTGTTGATTTGGCAT+CGG - Chr3:55637380-55637399 None:intergenic 35.0%
!!! ATTTTGACTGCAGCAAGAAA+TGG + Chr3:55638068-55638087 MsG0380014495.01.T01:CDS 35.0%
!!! GCACCTACACTTGTTTTTTT+AGG + Chr3:55637168-55637187 MsG0380014495.01.T01:intron 35.0%
AAAGCAAATGCTTCGAATCC+AGG - Chr3:55639011-55639030 None:intergenic 40.0%
ACAGGTGAACCATCATTGAA+AGG + Chr3:55638981-55639000 MsG0380014495.01.T01:CDS 40.0%
AGAGGGTCTAGATTCAAACT+CGG - Chr3:55638512-55638531 None:intergenic 40.0%
AGTGCCAAAGACAAGTGATA+AGG + Chr3:55639340-55639359 MsG0380014495.01.T01:CDS 40.0%
ATCACTTGTCTTTGGCACTT+TGG - Chr3:55639339-55639358 None:intergenic 40.0%
ATGGTGCGAAAGTAGTAAGA+AGG - Chr3:55638738-55638757 None:intergenic 40.0%
CCTTAATGCCTCAATGACAT+TGG - Chr3:55638201-55638220 None:intergenic 40.0%
GGAAAAGACCTATCTTCAGA+TGG - Chr3:55637016-55637035 None:intergenic 40.0%
GGAGCAGTACATTAAACAAC+TGG + Chr3:55638758-55638777 MsG0380014495.01.T01:intron 40.0%
GTGCCAAAGACAAGTGATAA+GGG + Chr3:55639341-55639360 MsG0380014495.01.T01:CDS 40.0%
GTGGCATATCAAATGGTTTG+AGG + Chr3:55638364-55638383 MsG0380014495.01.T01:CDS 40.0%
GTTCCCAAGTACGATTCAAA+AGG - Chr3:55637358-55637377 None:intergenic 40.0%
TACTTGTAGCAGTTGAGAAC+AGG + Chr3:55638171-55638190 MsG0380014495.01.T01:CDS 40.0%
TAGCAATGCCATCTGAAGAT+AGG + Chr3:55637005-55637024 MsG0380014495.01.T01:CDS 40.0%
TGAAGGAAGTCCAAGTAACA+CGG - Chr3:55637806-55637825 None:intergenic 40.0%
TGATAAATGATGCTAGTGCG+TGG + Chr3:55638859-55638878 MsG0380014495.01.T01:CDS 40.0%
TGATAATCTAATCCAAGGGG+TGG + Chr3:55638256-55638275 MsG0380014495.01.T01:CDS 40.0%
TGCAGGAGATAACAACAATG+AGG + Chr3:55637902-55637921 MsG0380014495.01.T01:intron 40.0%
TGCCAAAGACAAGTGATAAG+GGG + Chr3:55639342-55639361 MsG0380014495.01.T01:CDS 40.0%
TGGTGCGAAAGTAGTAAGAA+GGG - Chr3:55638737-55638756 None:intergenic 40.0%
TTCTTACTACTTTCGCACCA+TGG + Chr3:55638737-55638756 MsG0380014495.01.T01:intron 40.0%
TTTCTAACTGTGAAATGCGC+TGG - Chr3:55638786-55638805 None:intergenic 40.0%
TTTGTTTACAGCCCAGATCA+AGG + Chr3:55637421-55637440 MsG0380014495.01.T01:CDS 40.0%
! AGATGAAGCAAGAGCACAAA+TGG + Chr3:55637299-55637318 MsG0380014495.01.T01:CDS 40.0%
! AGGCATGTAGCATAGTTTTC+TGG - Chr3:55637037-55637056 None:intergenic 40.0%
! CCAATGTCATTGAGGCATTA+AGG + Chr3:55638198-55638217 MsG0380014495.01.T01:CDS 40.0%
! TTAGTGTTCTGAGTTCGGAT+TGG - Chr3:55638658-55638677 None:intergenic 40.0%
!!! TGTGCCTATTTTGACTATCG+TGG + Chr3:55637192-55637211 MsG0380014495.01.T01:intron 40.0%
AAGTAACACGGAGATCAGTC+AGG - Chr3:55637794-55637813 None:intergenic 45.0%
ACCAGTGAACATGGCAACAA+TGG - Chr3:55639174-55639193 None:intergenic 45.0%
AGAGCAGAAACCAGTGAACA+TGG - Chr3:55639183-55639202 None:intergenic 45.0%
ATTCGGATTCACAGCAGTCA+AGG + Chr3:55638405-55638424 MsG0380014495.01.T01:intron 45.0%
CAGGAGAACCAATGTCATTG+AGG + Chr3:55638190-55638209 MsG0380014495.01.T01:CDS 45.0%
CCAGGCTTTCCTTTCAATGA+TGG - Chr3:55638993-55639012 None:intergenic 45.0%
CCATCATTGAAAGGAAAGCC+TGG + Chr3:55638990-55639009 MsG0380014495.01.T01:CDS 45.0%
CTACTGCATACCAAGTCACA+GGG - Chr3:55639274-55639293 None:intergenic 45.0%
GACACTTACCTGAAATGCCA+AGG - Chr3:55637090-55637109 None:intergenic 45.0%
GTTACTTGGACTTCCTTCAC+CGG + Chr3:55637807-55637826 MsG0380014495.01.T01:intron 45.0%
TCCATTGTTGCCATGTTCAC+TGG + Chr3:55639170-55639189 MsG0380014495.01.T01:CDS 45.0%
TCCTTCACCGGAAAATCAGA+AGG + Chr3:55637819-55637838 MsG0380014495.01.T01:intron 45.0%
TTCGGATTCACAGCAGTCAA+GGG + Chr3:55638406-55638425 MsG0380014495.01.T01:intron 45.0%
! AAGCAAGAGCACAAATGGAG+TGG + Chr3:55637304-55637323 MsG0380014495.01.T01:CDS 45.0%
! TCCTTCTGATTTTCCGGTGA+AGG - Chr3:55637823-55637842 None:intergenic 45.0%
! TGACTGATCTCCGTGTTACT+TGG + Chr3:55637793-55637812 MsG0380014495.01.T01:intron 45.0%
!! ATGTTCACTGGTTTCTGCTC+TGG + Chr3:55639182-55639201 MsG0380014495.01.T01:CDS 45.0%
!!! AATTTTTTTATTTTAAATCA+AGG + Chr3:55637606-55637625 MsG0380014495.01.T01:intron 5.0%
!!! ATTTATTTTATTTTTTCATT+CGG + Chr3:55638388-55638407 MsG0380014495.01.T01:intron 5.0%
CGCCCCTTATCACTTGTCTT+TGG - Chr3:55639347-55639366 None:intergenic 50.0%
GACAAGTGATAAGGGGCGAA+AGG + Chr3:55639349-55639368 MsG0380014495.01.T01:CDS 50.0%
GCTACTGCATACCAAGTCAC+AGG - Chr3:55639275-55639294 None:intergenic 50.0%
GTAGTAGCAGCACAACTTGC+TGG + Chr3:55638909-55638928 MsG0380014495.01.T01:CDS 50.0%
GTGCTGCCCTTGAAATGATG+TGG + Chr3:55638345-55638364 MsG0380014495.01.T01:CDS 50.0%
TCACTTGCTTCCCTGTGACT+TGG + Chr3:55639261-55639280 MsG0380014495.01.T01:CDS 50.0%
TCTAATCCAAGGGGTGGATG+AGG + Chr3:55638262-55638281 MsG0380014495.01.T01:CDS 50.0%
TTTCTTCCTCATCCACCCCT+TGG - Chr3:55638271-55638290 None:intergenic 50.0%
!! CACAGTGCTTGATGATGCGA+AGG - Chr3:55638940-55638959 None:intergenic 50.0%
GGTGGCAACAACGGTGAAAC+AGG + Chr3:55638963-55638982 MsG0380014495.01.T01:CDS 55.0%
GTTTCACCGTTGTTGCCACC+CGG - Chr3:55638963-55638982 None:intergenic 55.0%
TGATGCTAGTGCGTGGCTCA+AGG + Chr3:55638866-55638885 MsG0380014495.01.T01:CDS 55.0%
! CGCATCATCAAGCACTGTGC+CGG + Chr3:55638941-55638960 MsG0380014495.01.T01:CDS 55.0%
! GCATCATCAAGCACTGTGCC+GGG + Chr3:55638942-55638961 MsG0380014495.01.T01:CDS 55.0%
ACTGTGCCGGGTGGCAACAA+CGG + Chr3:55638954-55638973 MsG0380014495.01.T01:CDS 60.0%
! TCATCAAGCACTGTGCCGGG+TGG + Chr3:55638945-55638964 MsG0380014495.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55636566 55639379 55636566 ID=MsG0380014495.01;Name=MsG0380014495.01
Chr3 mRNA 55636566 55639379 55636566 ID=MsG0380014495.01.T01;Parent=MsG0380014495.01;Name=MsG0380014495.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|5|0|477
Chr3 exon 55636566 55636605 55636566 ID=MsG0380014495.01.T01:exon:28779;Parent=MsG0380014495.01.T01
Chr3 exon 55636963 55637100 55636963 ID=MsG0380014495.01.T01:exon:28780;Parent=MsG0380014495.01.T01
Chr3 exon 55637281 55637442 55637281 ID=MsG0380014495.01.T01:exon:28781;Parent=MsG0380014495.01.T01
Chr3 exon 55637907 55638385 55637907 ID=MsG0380014495.01.T01:exon:28782;Parent=MsG0380014495.01.T01
Chr3 exon 55638765 55639379 55638765 ID=MsG0380014495.01.T01:exon:28783;Parent=MsG0380014495.01.T01
Chr3 CDS 55636566 55636605 55636566 ID=MsG0380014495.01.T01:cds;Parent=MsG0380014495.01.T01
Chr3 CDS 55636963 55637100 55636963 ID=MsG0380014495.01.T01:cds;Parent=MsG0380014495.01.T01
Chr3 CDS 55637281 55637442 55637281 ID=MsG0380014495.01.T01:cds;Parent=MsG0380014495.01.T01
Chr3 CDS 55637907 55638385 55637907 ID=MsG0380014495.01.T01:cds;Parent=MsG0380014495.01.T01
Chr3 CDS 55638765 55639379 55638765 ID=MsG0380014495.01.T01:cds;Parent=MsG0380014495.01.T01
Gene Sequence

>MsG0380014495.01.T01

ATGCTGCGGATGAAACAAATTACTTCTAATGCTGCAAATGGACCTAAAGATATGGTAGAGAGACAAATAGAACATCCCAATATAGCAATGCCATCTGAAGATAGGTCTTTTCCAGAAAACTATGCTACATGCCTTTGGTTTTTTAAGTTTGCATACATCTATATCCTTGGCATTTCAGGGGTTGATGAAATTAAAAAGATGAAGCAAGAGCACAAATGGAGTGGTCAACTCTTGAACATATTTATAGAGAATCCTTTTGAATCGTACTTGGGAACCGATGCCAAATCAACAAGAGATGAGAGTGAAACAGATTTCGTGTTTGTTTACAGCCCAGATCAAGGAGATAACAACAATGAGGACCCAAAGACTTCTGCAAAACTTGAACCTGAAGCAATTTTGGAAAGTGAGACAGCAATTTTGACTGCAGCAAGACTTATAAGTGAAGCAATTTCGGAAAGCCAGAGAGCAATTTTGACTGAAAAACGTAAACGTGAGATAGCAATTTTGACTGCAGCAAGAAATGGCATAGTTGAAATAGTGGAAAAGCTTATAACAAAAATACCAAGTTCCATATACGATGTTAACATGGAAAATAAAAATGTATTACTTGTAGCAGTTGAGAACAGGAGAACCAATGTCATTGAGGCATTAAGGAAACGTTTTGAAAAGGACAATAAAATGGCAATATTTGATAATCTAATCCAAGGGGTGGATGAGGAAGAAAACACTGTGTTACATTTAGCAGCTACCAAAAGTGATCGAGATTGTTACAAATCTGGTGCTGCCCTTGAAATGATGTGGCATATCAAATGGTTTGAGTACATTAAACAACTGGTACCAGCGCATTTCACAGTTAGAAACAACAAAAACGAAGAAAGAGCAGAAGAATTATTAGAGAAATCAAATAAATCACTGATAAATGATGCTAGTGCGTGGCTCAAGGAAACTTTTGAATCATGCTCTGTAGTAGCAGCACAACTTGCTGGTGTTTCCTTCGCATCATCAAGCACTGTGCCGGGTGGCAACAACGGTGAAACAGGTGAACCATCATTGAAAGGAAAGCCTGGATTCGAAGCATTTGCTTTGTCATCCGTAATTGGTCTTTGTTTCTCTGTCACTGCACTCATAATGTTCCTTTCTATAGTCACTTCTCGAAAAGAACCACAAAATTACAAAATTGATTTGCCAAAGAAACTACTTTTGGGATTAAGTTCTCTTTTCTTGTCCATTGTTGCCATGTTCACTGGTTTCTGCTCTGGTCATTTCTTTCTCATTGACCAAAAATACAAGCACATTGTGTTCCTCATTTATATATTCACTTGCTTCCCTGTGACTTGGTATGCAGTAGCACAACTTTCACTTTACATTGATCTTCTTAGAGGTATTGTAGCCAAAGTGCCAAAGACAAGTGATAAGGGGCGAAAGGATTTATAA

Protein sequence

>MsG0380014495.01.T01

MLRMKQITSNAANGPKDMVERQIEHPNIAMPSEDRSFPENYATCLWFFKFAYIYILGISGVDEIKKMKQEHKWSGQLLNIFIENPFESYLGTDAKSTRDESETDFVFVYSPDQGDNNNEDPKTSAKLEPEAILESETAILTAARLISEAISESQRAILTEKRKREIAILTAARNGIVEIVEKLITKIPSSIYDVNMENKNVLLVAVENRRTNVIEALRKRFEKDNKMAIFDNLIQGVDEEENTVLHLAATKSDRDCYKSGAALEMMWHIKWFEYIKQLVPAHFTVRNNKNEERAEELLEKSNKSLINDASAWLKETFESCSVVAAQLAGVSFASSSTVPGGNNGETGEPSLKGKPGFEAFALSSVIGLCFSVTALIMFLSIVTSRKEPQNYKIDLPKKLLLGLSSLFLSIVAMFTGFCSGHFFLIDQKYKHIVFLIYIFTCFPVTWYAVAQLSLYIDLLRGIVAKVPKTSDKGRKDL*