AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026050.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026050.01.T01 MTR_5g038560 48.780 123 13 2 1 96 120 219 1.14e-25 98.2
MsG0580026050.01.T01 MTR_8g468570 36.585 123 28 2 1 96 119 218 1.15e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026050.01.T01 AT2G02740 38.889 126 26 2 1 98 123 225 3.91e-19 81.3
MsG0580026050.01.T01 AT1G14410 39.200 125 26 2 1 98 119 220 8.81e-19 80.1

Find 70 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTCTATCCTTTCTTCT+TGG 0.176060 5:-29854102 None:intergenic
GCTTATGTTTGGTGAAATTA+AGG 0.182996 5:+29857700 MsG0580026050.01.T01:CDS
CGTTGAGGTGGAGGAATGTT+TGG 0.222116 5:-29854302 None:intergenic
GGCTGGCGACAGGTGAGGTT+GGG 0.243945 5:-29854264 None:intergenic
TTCTTCTCATCTTCCTCTTC+AGG 0.273239 5:+29854334 MsG0580026050.01.T01:five_prime_UTR
AACTACCTTCTACCCATAAA+AGG 0.287714 5:-29857949 None:intergenic
TAAACTATCTGTGGATGAAA+TGG 0.308339 5:+29857876 MsG0580026050.01.T01:CDS
TGCTTTCTGCTCCAATCATT+TGG 0.330352 5:-29854794 None:intergenic
GAAGCTGCTGTTCTTGTCAT+TGG 0.335369 5:+29860720 MsG0580026050.01.T01:CDS
CACGGTGGACTACGGCAAAA+AGG 0.339444 5:+29860940 MsG0580026050.01.T01:CDS
GTTGAGGTGGAGGAATGTTT+GGG 0.343346 5:-29854301 None:intergenic
GCTGGCGACAGGTGAGGTTG+GGG 0.347636 5:-29854263 None:intergenic
GGTGGAGGAATGTTTGGGTT+TGG 0.361451 5:-29854296 None:intergenic
GAGTGAGTTGGGACTGAAAT+GGG 0.368128 5:-29854185 None:intergenic
CTACAGTTTGCTCCTTCTGC+CGG 0.373754 5:+29854765 MsG0580026050.01.T01:CDS
CTGGCGACAGGTGAGGTTGG+GGG 0.397051 5:-29854262 None:intergenic
AGGCTGGCGACAGGTGAGGT+TGG 0.402112 5:-29854265 None:intergenic
GGTTGAGGGCGTTGAGGTGG+AGG 0.407647 5:-29854311 None:intergenic
ATACTCCATGAAGTGAATTC+TGG 0.409708 5:-29854589 None:intergenic
TACCTCCAGAATTCACTTCA+TGG 0.410963 5:+29854584 MsG0580026050.01.T01:five_prime_UTR
TGGGTTTGTAGTTGTTGTAT+AGG 0.416258 5:-29854166 None:intergenic
GAACAGTCCTGCTGTGGATC+AGG 0.428633 5:-29860768 None:intergenic
ATGGGAAATCTAATTAATCT+TGG 0.439383 5:+29857895 MsG0580026050.01.T01:CDS
TGGCGACAGGTGAGGTTGGG+GGG 0.446239 5:-29854261 None:intergenic
AATCCATTCTTTACCTCGTG+TGG 0.447734 5:+29854228 MsG0580026050.01.T01:five_prime_UTR
GAAGGTTGAGGGCGTTGAGG+TGG 0.449595 5:-29854314 None:intergenic
ACGACCAACGTAACCCTTAG+TGG 0.450274 5:-29854522 None:intergenic
TACAGTTTGCTCCTTCTGCC+GGG 0.453244 5:+29854766 MsG0580026050.01.T01:CDS
GAAGATGAGAAGAAGGTTGA+GGG 0.461999 5:-29854325 None:intergenic
GGAAGATGAGAAGAAGGTTG+AGG 0.462289 5:-29854326 None:intergenic
AAACTATCTGTGGATGAAAT+GGG 0.464987 5:+29857877 MsG0580026050.01.T01:CDS
GTTTGGGTTTGGAAAAGCTC+AGG 0.477299 5:-29854285 None:intergenic
TGAAGAGGAAGATGAGAAGA+AGG 0.478578 5:-29854332 None:intergenic
TTCAGGTGGCGATTGCTTCA+AGG 0.484245 5:+29860906 MsG0580026050.01.T01:intron
CAGTTAGAGAATTGCCACTA+AGG 0.486519 5:+29854508 MsG0580026050.01.T01:intron
TGATCCACAGCAGGACTGTT+CGG 0.494333 5:+29860770 MsG0580026050.01.T01:CDS
TGTTGATGAAAGAGTGAGTT+GGG 0.501539 5:-29854196 None:intergenic
AGAGTGAGTTGGGACTGAAA+TGG 0.511343 5:-29854186 None:intergenic
GTGGCTGCCTGATCCACAGC+AGG 0.511377 5:+29860761 MsG0580026050.01.T01:CDS
GAAAAGCTCAGGCTGGCGAC+AGG 0.513301 5:-29854274 None:intergenic
TCCAATCATTTGGCAAAACC+CGG 0.517441 5:-29854784 None:intergenic
TTGGTCGTTCAGTTTACAAA+GGG 0.527190 5:+29854537 MsG0580026050.01.T01:five_prime_UTR
GTAGTTGTTGTATAGGACTG+TGG 0.535088 5:-29854159 None:intergenic
ATCTAATTAATCTTGGTGCA+AGG 0.535516 5:+29857902 MsG0580026050.01.T01:CDS
GTTACCAACACGGTGGACTA+CGG 0.537444 5:+29860932 MsG0580026050.01.T01:CDS
AGTTAGAGAATTGCCACTAA+GGG 0.538677 5:+29854509 MsG0580026050.01.T01:intron
GGGCATTCAAGATATAAAGA+AGG 0.542095 5:+29854732 MsG0580026050.01.T01:five_prime_UTR
AAATGATTGGAGCAGAAAGC+AGG 0.542940 5:+29854796 MsG0580026050.01.T01:CDS
TCTAATTAATCTTGGTGCAA+GGG 0.543790 5:+29857903 MsG0580026050.01.T01:CDS
GACCCACACGAGGTAAAGAA+TGG 0.550356 5:-29854231 None:intergenic
ACATAAACAACCAAGAAGAA+AGG 0.550458 5:+29854092 MsG0580026050.01.T01:five_prime_UTR
GGGTTTGGAAAAGCTCAGGC+TGG 0.553697 5:-29854281 None:intergenic
GAAGAAGGTTGAGGGCGTTG+AGG 0.572430 5:-29854317 None:intergenic
CTCACCGAACAGTCCTGCTG+TGG 0.572774 5:-29860774 None:intergenic
ATTTGGCAAAACCCGGCAGA+AGG 0.577167 5:-29854777 None:intergenic
CACAGGTATTAAACTATCTG+TGG 0.578176 5:+29857867 MsG0580026050.01.T01:intron
ATCCATTCTTTACCTCGTGT+GGG 0.578241 5:+29854229 MsG0580026050.01.T01:five_prime_UTR
CAAAGGGAAAGCTGTGCTCA+CGG 0.588472 5:+29854553 MsG0580026050.01.T01:five_prime_UTR
TTTGCCGTAGTCCACCGTGT+TGG 0.599316 5:-29860936 None:intergenic
GTTGGTCGTTCAGTTTACAA+AGG 0.607110 5:+29854536 MsG0580026050.01.T01:five_prime_UTR
GGGAAAGTGGGACCCACACG+AGG 0.607136 5:-29854241 None:intergenic
GTTGTTGTATAGGACTGTGG+TGG 0.614800 5:-29854156 None:intergenic
GCTCAGGCTGGCGACAGGTG+AGG 0.615879 5:-29854269 None:intergenic
CTCCATGAAGTGAATTCTGG+AGG 0.630406 5:-29854586 None:intergenic
ATTTATCCCTGTCACAAAAG+CGG 0.631693 5:+29858995 MsG0580026050.01.T01:CDS
GTGCAAGAGATGAGCTGCAG+TGG 0.638386 5:+29860742 MsG0580026050.01.T01:CDS
TTCAAGGAATGTTACCAACA+CGG 0.662469 5:+29860922 MsG0580026050.01.T01:CDS
ATTGCCACTAAGGGTTACGT+TGG 0.667190 5:+29854518 MsG0580026050.01.T01:five_prime_UTR
GTGTTGATGAAAGAGTGAGT+TGG 0.675389 5:-29854197 None:intergenic
AAGGAATGTTACCAACACGG+TGG 0.765804 5:+29860925 MsG0580026050.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATAAAGAAAG+GGG + Chr5:29855466-29855485 MsG0580026050.01.T01:intron 10.0%
!! TCAATAAAATTTACTATTTA+TGG + Chr5:29858648-29858667 MsG0580026050.01.T01:intron 10.0%
!!! ACTTTATAATTTTAAGAATT+TGG + Chr5:29858538-29858557 MsG0580026050.01.T01:intron 10.0%
!!! CAAATTTTGTAAAATTATAA+AGG - Chr5:29858709-29858728 None:intergenic 10.0%
!!! TAAACATTCATTTTAAAAAT+AGG - Chr5:29860555-29860574 None:intergenic 10.0%
!!! TAAGATTTTTAATGTAAAAA+GGG + Chr5:29860350-29860369 MsG0580026050.01.T01:intron 10.0%
!!! TTAAGATTTTTAATGTAAAA+AGG + Chr5:29860349-29860368 MsG0580026050.01.T01:intron 10.0%
!! AAACTTTAGTTATGATTAAT+TGG + Chr5:29856653-29856672 MsG0580026050.01.T01:intron 15.0%
!!! AAGATTTTTAATGTAAAAAG+GGG + Chr5:29860351-29860370 MsG0580026050.01.T01:intron 15.0%
!!! AAGCATTATTTTTTTTAAAC+AGG - Chr5:29858460-29858479 None:intergenic 15.0%
!!! AATATACAACATTTTAACTT+AGG - Chr5:29857382-29857401 None:intergenic 15.0%
!!! AATTATTGTTTTTATCATCA+TGG + Chr5:29854437-29854456 MsG0580026050.01.T01:intron 15.0%
!!! ATAAAAATTTGAATGTTTTG+AGG + Chr5:29856709-29856728 MsG0580026050.01.T01:intron 15.0%
!!! ATTGAATACTTTTAACTATT+CGG - Chr5:29858488-29858507 None:intergenic 15.0%
!!! TAATTTTAAGAATTTGGAAA+AGG + Chr5:29858544-29858563 MsG0580026050.01.T01:intron 15.0%
!!! TATGTTTTTTTGTTAATCAT+AGG + Chr5:29854609-29854628 MsG0580026050.01.T01:intron 15.0%
!!! TTTAAACCTATTTTCTATTA+TGG + Chr5:29856305-29856324 MsG0580026050.01.T01:intron 15.0%
!!! TTTCAAATTTTTGAATAACA+TGG - Chr5:29860283-29860302 None:intergenic 15.0%
!! AAAATTTCTCAAACAATTCT+AGG - Chr5:29860094-29860113 None:intergenic 20.0%
!! AACTGTAAATTATTTATGCA+TGG + Chr5:29857567-29857586 MsG0580026050.01.T01:intron 20.0%
!! AATGCAATATCTGAATAATA+AGG + Chr5:29856926-29856945 MsG0580026050.01.T01:intron 20.0%
!! ACTGTAAATTATTTATGCAT+GGG + Chr5:29857568-29857587 MsG0580026050.01.T01:intron 20.0%
!! AGTAAAAAAAACTACATGTA+TGG - Chr5:29859467-29859486 None:intergenic 20.0%
!! AGTATTGTTCTTCTATATTT+GGG + Chr5:29854821-29854840 MsG0580026050.01.T01:intron 20.0%
!! ATCCAGTAAAATAATTAGAA+GGG - Chr5:29857986-29858005 None:intergenic 20.0%
!! ATTATTCAGATATTGCATTT+CGG - Chr5:29856925-29856944 None:intergenic 20.0%
!! GAAATTGTTAATATATACTC+TGG + Chr5:29858870-29858889 MsG0580026050.01.T01:intron 20.0%
!! TAACTTATGACATACATAAT+GGG + Chr5:29854397-29854416 MsG0580026050.01.T01:intron 20.0%
!! TATATATTAACAATTTCCGA+TGG - Chr5:29858867-29858886 None:intergenic 20.0%
!! TTAACTTATGACATACATAA+TGG + Chr5:29854396-29854415 MsG0580026050.01.T01:intron 20.0%
!! TTATGCTATAACACTTAATT+AGG + Chr5:29858361-29858380 MsG0580026050.01.T01:intron 20.0%
!! TTTACAAAATGTACTATACA+AGG - Chr5:29857752-29857771 None:intergenic 20.0%
!!! AAATTTTTGAATAACATGGT+GGG - Chr5:29860279-29860298 None:intergenic 20.0%
!!! ATCTAAATTCTCATGTTTTA+TGG + Chr5:29854649-29854668 MsG0580026050.01.T01:intron 20.0%
!!! TGAAAGAGTCTAAAATTTAA+TGG + Chr5:29856835-29856854 MsG0580026050.01.T01:intron 20.0%
!!! TGTTTTTTAATGTAGCTTTT+AGG + Chr5:29859676-29859695 MsG0580026050.01.T01:intron 20.0%
!!! TTTTATGGAATTATGAATGT+GGG + Chr5:29854664-29854683 MsG0580026050.01.T01:intron 20.0%
!!! TTTTTCATTAAACATATCTC+CGG - Chr5:29856875-29856894 None:intergenic 20.0%
!!! TTTTTTATTTTTACCTGAAG+AGG - Chr5:29854350-29854369 None:intergenic 20.0%
! AAATATTCTGCAAGCAAAAT+GGG - Chr5:29857332-29857351 None:intergenic 25.0%
! AAATGTGATTGTATCTTCTA+TGG - Chr5:29859228-29859247 None:intergenic 25.0%
! AACATTGAATAAACGTAATC+CGG - Chr5:29859425-29859444 None:intergenic 25.0%
! AACTGTAATATTATTTGTGC+AGG + Chr5:29857660-29857679 MsG0580026050.01.T01:intron 25.0%
! AAGCTACATTAAAAAACAAC+TGG - Chr5:29859674-29859693 None:intergenic 25.0%
! AATAGGTTTAAATGTGTCAT+TGG - Chr5:29856297-29856316 None:intergenic 25.0%
! AATGTTCCATAACTATAAAC+AGG - Chr5:29854692-29854711 None:intergenic 25.0%
! AATTGAAGTTATATTAGTGC+AGG - Chr5:29858911-29858930 None:intergenic 25.0%
! AATTGATAGGCAAATTGATA+TGG - Chr5:29857289-29857308 None:intergenic 25.0%
! ATATCTACACTTGAATTTAG+TGG - Chr5:29859128-29859147 None:intergenic 25.0%
! ATGGGAAATCTAATTAATCT+TGG + Chr5:29857895-29857914 MsG0580026050.01.T01:CDS 25.0%
! ATTACGTAAAAGCAAATTGA+TGG - Chr5:29857828-29857847 None:intergenic 25.0%
! ATTGAAGTTATATTAGTGCA+GGG - Chr5:29858910-29858929 None:intergenic 25.0%
! ATTGATAGGCAAATTGATAT+GGG - Chr5:29857288-29857307 None:intergenic 25.0%
! CAGTTGTAAAAAAATTGCTT+TGG + Chr5:29855299-29855318 MsG0580026050.01.T01:intron 25.0%
! CATCCAGTAAAATAATTAGA+AGG - Chr5:29857987-29858006 None:intergenic 25.0%
! GTCATTAGTTAAAGTATGTA+TGG + Chr5:29860500-29860519 MsG0580026050.01.T01:intron 25.0%
! GTTAATAAGATCATACAAGA+TGG - Chr5:29860036-29860055 None:intergenic 25.0%
! TAAATATTCTGCAAGCAAAA+TGG - Chr5:29857333-29857352 None:intergenic 25.0%
! TAATTAGGAATGAAAAGTTC+CGG + Chr5:29859403-29859422 MsG0580026050.01.T01:intron 25.0%
! TATCTACACTTGAATTTAGT+GGG - Chr5:29859127-29859146 None:intergenic 25.0%
! TCTACATGTTATATCTTCAT+GGG - Chr5:29856338-29856357 None:intergenic 25.0%
! TGAGATGTTAGTATCATTAT+TGG + Chr5:29860113-29860132 MsG0580026050.01.T01:intron 25.0%
! TGCAATATTCTAATGACTAT+AGG + Chr5:29859997-29860016 MsG0580026050.01.T01:intron 25.0%
! TTCTACATGTTATATCTTCA+TGG - Chr5:29856339-29856358 None:intergenic 25.0%
! TTGATGCCATAATAGAAAAT+AGG - Chr5:29856314-29856333 None:intergenic 25.0%
!! AAACCAAAAGTGTAAATGTA+GGG - Chr5:29855242-29855261 None:intergenic 25.0%
!! ATCATAACTAAAGTTTTCGT+AGG - Chr5:29856649-29856668 None:intergenic 25.0%
!! CAAATTTTTGAATAACATGG+TGG - Chr5:29860280-29860299 None:intergenic 25.0%
!! GAGTATTGTTCTTCTATATT+TGG + Chr5:29854820-29854839 MsG0580026050.01.T01:intron 25.0%
!! GTCTAAGACAGTTTATAATT+AGG + Chr5:29859388-29859407 MsG0580026050.01.T01:intron 25.0%
!! GTTTTATGGAATTATGAATG+TGG + Chr5:29854663-29854682 MsG0580026050.01.T01:intron 25.0%
!! TAAACCAAAAGTGTAAATGT+AGG - Chr5:29855243-29855262 None:intergenic 25.0%
!! TCACTCTTTGAGAAATAAAT+TGG - Chr5:29858616-29858635 None:intergenic 25.0%
!! TCATAACTAAAGTTTTCGTA+GGG - Chr5:29856648-29856667 None:intergenic 25.0%
!! TGGAAAAGGATAACATTTTA+AGG + Chr5:29858558-29858577 MsG0580026050.01.T01:intron 25.0%
!!! AAAACTTTTTCTAAAAACGC+TGG - Chr5:29859169-29859188 None:intergenic 25.0%
!!! AATATTTACTTCTGGCTTTA+TGG - Chr5:29859923-29859942 None:intergenic 25.0%
!!! AATGGTTAGTTTTTTTCTTC+CGG + Chr5:29856853-29856872 MsG0580026050.01.T01:intron 25.0%
!!! AGGTAAAGAATGGATTTTTT+GGG - Chr5:29854224-29854243 None:intergenic 25.0%
!!! ATTGTTTTGTCAATTTTCGA+AGG + Chr5:29858936-29858955 MsG0580026050.01.T01:intron 25.0%
!!! ATTTTTTCACGATCCTTTTA+TGG + Chr5:29857936-29857955 MsG0580026050.01.T01:CDS 25.0%
!!! CAATTTTTTTACAAACTGCA+GGG + Chr5:29856209-29856228 MsG0580026050.01.T01:intron 25.0%
!!! GCTATTTTCATTAACTATTC+TGG - Chr5:29858256-29858275 None:intergenic 25.0%
!!! TACCCTTCTAATTATTTTAC+TGG + Chr5:29857981-29858000 MsG0580026050.01.T01:intron 25.0%
!!! TATGTTCTGTTACTGATTTT+TGG - Chr5:29854077-29854096 None:intergenic 25.0%
!!! TTGTACTTTTATTAGTCTCT+TGG + Chr5:29855157-29855176 MsG0580026050.01.T01:intron 25.0%
!!! TTTTTTCACGATCCTTTTAT+GGG + Chr5:29857937-29857956 MsG0580026050.01.T01:CDS 25.0%
AAAACGTGTCTAGCTAAATT+AGG + Chr5:29859304-29859323 MsG0580026050.01.T01:intron 30.0%
AAACTATCTGTGGATGAAAT+GGG + Chr5:29857877-29857896 MsG0580026050.01.T01:CDS 30.0%
AAAGTGAGAAAAGTTTAAGG+TGG + Chr5:29858760-29858779 MsG0580026050.01.T01:intron 30.0%
AAATCCAATGTTGTCAATTG+TGG - Chr5:29855138-29855157 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - Chr5:29858221-29858240 None:intergenic 30.0%
AATCTTACAGAGATATGCAA+TGG + Chr5:29857473-29857492 MsG0580026050.01.T01:intron 30.0%
ACACACTTGAATCAAAACAA+AGG - Chr5:29859093-29859112 None:intergenic 30.0%
ACATAAACAACCAAGAAGAA+AGG + Chr5:29854092-29854111 MsG0580026050.01.T01:five_prime_UTR 30.0%
ACTTAGTTTAAACATGTGAC+CGG - Chr5:29858804-29858823 None:intergenic 30.0%
ACTTGAATCAAAACAAAGGT+AGG - Chr5:29859089-29859108 None:intergenic 30.0%
ATAACTTTGAACCTAACTCA+AGG + Chr5:29857518-29857537 MsG0580026050.01.T01:intron 30.0%
ATAGACTTTCCTTCTCAAAT+AGG + Chr5:29858063-29858082 MsG0580026050.01.T01:intron 30.0%
ATAGCCATTCAAAACTAAGT+AGG - Chr5:29856763-29856782 None:intergenic 30.0%
ATCTTACAGAGATATGCAAT+GGG + Chr5:29857474-29857493 MsG0580026050.01.T01:intron 30.0%
ATGGAATCCTTAACATGTAA+GGG + Chr5:29858667-29858686 MsG0580026050.01.T01:intron 30.0%
ATTAACAATTTCCGATGGAA+GGG - Chr5:29858862-29858881 None:intergenic 30.0%
ATTACACTGAAGTAGAATCA+TGG - Chr5:29855684-29855703 None:intergenic 30.0%
ATTGCATATCTCTGTAAGAT+TGG - Chr5:29857474-29857493 None:intergenic 30.0%
CAAAAAATGGTGTAAATGCA+GGG + Chr5:29856270-29856289 MsG0580026050.01.T01:intron 30.0%
CTGACTAAACAAAACTTCTA+AGG - Chr5:29856499-29856518 None:intergenic 30.0%
CTTAGTGGAATTTGAACAAA+CGG + Chr5:29854916-29854935 MsG0580026050.01.T01:intron 30.0%
CTTCAAATATGTAATGGTCA+CGG + Chr5:29858103-29858122 MsG0580026050.01.T01:intron 30.0%
CTTGAATCAAAACAAAGGTA+GGG - Chr5:29859088-29859107 None:intergenic 30.0%
GATATCACCTACTTATTTAG+AGG + Chr5:29859143-29859162 MsG0580026050.01.T01:intron 30.0%
GGTAAAGTGAGAAAAGTTTA+AGG + Chr5:29858757-29858776 MsG0580026050.01.T01:intron 30.0%
GTCATGCTAACATTAAATCA+CGG - Chr5:29858518-29858537 None:intergenic 30.0%
TAAACTATCTGTGGATGAAA+TGG + Chr5:29857876-29857895 MsG0580026050.01.T01:CDS 30.0%
TAACTTTGAACCTAACTCAA+GGG + Chr5:29857519-29857538 MsG0580026050.01.T01:intron 30.0%
TAGAAACATGAACAAAACCA+CGG + Chr5:29857091-29857110 MsG0580026050.01.T01:intron 30.0%
TAGTACAATGCTGTCAAAAT+TGG + Chr5:29854962-29854981 MsG0580026050.01.T01:intron 30.0%
TATGGAATCCTTAACATGTA+AGG + Chr5:29858666-29858685 MsG0580026050.01.T01:intron 30.0%
TATTAACAATTTCCGATGGA+AGG - Chr5:29858863-29858882 None:intergenic 30.0%
TCTAGGTTTAAATGTGTCAT+TGG + Chr5:29855215-29855234 MsG0580026050.01.T01:intron 30.0%
TGATATGCAGTCCTTAAAAT+TGG + Chr5:29855913-29855932 MsG0580026050.01.T01:intron 30.0%
TGGTGTCTTCAAATATGTAA+TGG + Chr5:29858097-29858116 MsG0580026050.01.T01:intron 30.0%
TGTCACAATTCGAAATTGAT+AGG - Chr5:29857302-29857321 None:intergenic 30.0%
TGTTGTGATTCTTGTAAATG+TGG + Chr5:29859441-29859460 MsG0580026050.01.T01:intron 30.0%
TTCAAATATGTAATGGTCAC+GGG + Chr5:29858104-29858123 MsG0580026050.01.T01:intron 30.0%
TTGAATCAAAACAAAGGTAG+GGG - Chr5:29859087-29859106 None:intergenic 30.0%
TTGTACTAAATCTAGTATCG+CGG - Chr5:29854950-29854969 None:intergenic 30.0%
TTGTTCTTCTATATTTGGGT+CGG + Chr5:29854825-29854844 MsG0580026050.01.T01:intron 30.0%
TTTAACAGCAGTTTAACAGA+AGG + Chr5:29856178-29856197 MsG0580026050.01.T01:intron 30.0%
! ATCTAATTAATCTTGGTGCA+AGG + Chr5:29857902-29857921 MsG0580026050.01.T01:CDS 30.0%
! CCAAACAAAAAAAAAGTGCA+AGG + Chr5:29856239-29856258 MsG0580026050.01.T01:intron 30.0%
! GCTTATGTTTGGTGAAATTA+AGG + Chr5:29857700-29857719 MsG0580026050.01.T01:CDS 30.0%
! TCTAATTAATCTTGGTGCAA+GGG + Chr5:29857903-29857922 MsG0580026050.01.T01:CDS 30.0%
! TGATTGAGCATCCAATTTTA+AGG - Chr5:29855927-29855946 None:intergenic 30.0%
! TTAAAAAACAACTGGTTTCG+TGG - Chr5:29859666-29859685 None:intergenic 30.0%
!! TAGGAACTAAGAAGTACTAT+GGG - Chr5:29857051-29857070 None:intergenic 30.0%
!! TGTTCGTTTTTGCTTATGTT+TGG + Chr5:29857689-29857708 MsG0580026050.01.T01:CDS 30.0%
!! TTTGTGTGTTTTTGTAGTCA+GGG + Chr5:29854711-29854730 MsG0580026050.01.T01:intron 30.0%
!! TTTTGTGTGTTTTTGTAGTC+AGG + Chr5:29854710-29854729 MsG0580026050.01.T01:intron 30.0%
!!! AGCAATTTTTTTACAACTGC+AGG - Chr5:29855298-29855317 None:intergenic 30.0%
!!! CCTTGCACTTTTTTTTTGTT+TGG - Chr5:29856242-29856261 None:intergenic 30.0%
!!! GAGGTAAAGAATGGATTTTT+TGG - Chr5:29854225-29854244 None:intergenic 30.0%
!!! GCAATTTTTTTACAAACTGC+AGG + Chr5:29856208-29856227 MsG0580026050.01.T01:intron 30.0%
!!! GCAATTTTTTTACAACTGCA+GGG - Chr5:29855297-29855316 None:intergenic 30.0%
!!! TGATCCTACTTAGTTTTGAA+TGG + Chr5:29856756-29856775 MsG0580026050.01.T01:intron 30.0%
AAAGCAAAAACATGTTGTCG+AGG - Chr5:29859787-29859806 None:intergenic 35.0%
AAATAGCAGCTATTGCTTAG+TGG + Chr5:29854901-29854920 MsG0580026050.01.T01:intron 35.0%
AAATCCCTTCCTATTTGAGA+AGG - Chr5:29858075-29858094 None:intergenic 35.0%
AACTACCTTCTACCCATAAA+AGG - Chr5:29857952-29857971 None:intergenic 35.0%
AAGAGAAAGTTTGTGTCACA+GGG - Chr5:29856474-29856493 None:intergenic 35.0%
AAGCAAAAACATGTTGTCGA+GGG - Chr5:29859786-29859805 None:intergenic 35.0%
ACAAAAGAACGAAAGATGGT+GGG - Chr5:29857219-29857238 None:intergenic 35.0%
ACCTCAAATTGGAAAACGTA+AGG - Chr5:29860643-29860662 None:intergenic 35.0%
ACTTTCCTTCTCAAATAGGA+AGG + Chr5:29858067-29858086 MsG0580026050.01.T01:intron 35.0%
AGACTTTGAATGGAACAGAT+AGG + Chr5:29859966-29859985 MsG0580026050.01.T01:intron 35.0%
AGTCTTCTTCTCTTCTTCTT+CGG - Chr5:29859951-29859970 None:intergenic 35.0%
AGTTAACTCACAGAAACGTA+CGG + Chr5:29856799-29856818 MsG0580026050.01.T01:intron 35.0%
AGTTAGAGAATTGCCACTAA+GGG + Chr5:29854509-29854528 MsG0580026050.01.T01:intron 35.0%
AGTTGTCTTTACTTGAACAC+AGG + Chr5:29857850-29857869 MsG0580026050.01.T01:intron 35.0%
AGTTTGCAATGAATCCAATG+AGG + Chr5:29857119-29857138 MsG0580026050.01.T01:intron 35.0%
ATAACTTCGGACTAACTCAA+GGG + Chr5:29857612-29857631 MsG0580026050.01.T01:intron 35.0%
ATACTCCATGAAGTGAATTC+TGG - Chr5:29854592-29854611 None:intergenic 35.0%
ATGAATCCAATGAGGCAATA+AGG + Chr5:29857127-29857146 MsG0580026050.01.T01:intron 35.0%
ATGCACAAAAGAACGAAAGA+TGG - Chr5:29857223-29857242 None:intergenic 35.0%
ATTAGGCTGTTTATCCAAAC+AGG + Chr5:29858378-29858397 MsG0580026050.01.T01:intron 35.0%
ATTTATCCCTGTCACAAAAG+CGG + Chr5:29858995-29859014 MsG0580026050.01.T01:CDS 35.0%
CAAGGACTGAAACCAAAAAA+TGG + Chr5:29856257-29856276 MsG0580026050.01.T01:intron 35.0%
CACAGGTATTAAACTATCTG+TGG + Chr5:29857867-29857886 MsG0580026050.01.T01:intron 35.0%
CAGTTTAACAGAAGGATCAA+TGG + Chr5:29856186-29856205 MsG0580026050.01.T01:intron 35.0%
CCAAAAAATGGTGTAAATGC+AGG + Chr5:29856269-29856288 MsG0580026050.01.T01:intron 35.0%
CCGCTGTTAAAAAAAACAGA+CGG + Chr5:29855340-29855359 MsG0580026050.01.T01:intron 35.0%
CGGTTTGCAATATTTACTTC+TGG - Chr5:29859931-29859950 None:intergenic 35.0%
CTCAAATAACACAATCCAAC+AGG - Chr5:29858130-29858149 None:intergenic 35.0%
CTTTCCTTCTCAAATAGGAA+GGG + Chr5:29858068-29858087 MsG0580026050.01.T01:intron 35.0%
GAAGAGAAGAAGACTTTGAA+TGG + Chr5:29859956-29859975 MsG0580026050.01.T01:intron 35.0%
GAATTGCAATGCACAAATCT+TGG - Chr5:29855876-29855895 None:intergenic 35.0%
GACTTTGAATGGAACAGATA+GGG + Chr5:29859967-29859986 MsG0580026050.01.T01:intron 35.0%
GCGTATGAATCTGCATATAT+GGG - Chr5:29858405-29858424 None:intergenic 35.0%
GGGCATTCAAGATATAAAGA+AGG + Chr5:29854732-29854751 MsG0580026050.01.T01:five_prime_UTR 35.0%
GTAATCATTGTATTCAGCTC+TGG + Chr5:29859719-29859738 MsG0580026050.01.T01:intron 35.0%
GTCAAAATTGGCTACTATAG+TGG + Chr5:29854974-29854993 MsG0580026050.01.T01:intron 35.0%
GTTAATATGTTCCCTTCCAT+CGG + Chr5:29858848-29858867 MsG0580026050.01.T01:intron 35.0%
TACTCTCTATCCTTTCTTCT+TGG - Chr5:29854105-29854124 None:intergenic 35.0%
TCAAATTGGAAAACGTAAGG+TGG - Chr5:29860640-29860659 None:intergenic 35.0%
TGAATCAAAACAAAGGTAGG+GGG - Chr5:29859086-29859105 None:intergenic 35.0%
TGATCCACAATTGACAACAT+TGG + Chr5:29855131-29855150 MsG0580026050.01.T01:intron 35.0%
TGCGTATGAATCTGCATATA+TGG - Chr5:29858406-29858425 None:intergenic 35.0%
TGGGTTCCTGTTTATAGTTA+TGG + Chr5:29854683-29854702 MsG0580026050.01.T01:intron 35.0%
TGGGTTTGTAGTTGTTGTAT+AGG - Chr5:29854169-29854188 None:intergenic 35.0%
TGTCACAGGGGAAAATTTAA+GGG - Chr5:29856461-29856480 None:intergenic 35.0%
TTAACTCAACCCCTATTCAT+GGG - Chr5:29860225-29860244 None:intergenic 35.0%
TTAGGCTGTTTATCCAAACA+GGG + Chr5:29858379-29858398 MsG0580026050.01.T01:intron 35.0%
TTCAAGGAATGTTACCAACA+CGG + Chr5:29860922-29860941 MsG0580026050.01.T01:CDS 35.0%
TTCTCAAATAGGAAGGGATT+TGG + Chr5:29858074-29858093 MsG0580026050.01.T01:intron 35.0%
TTGGTCGTTCAGTTTACAAA+GGG + Chr5:29854537-29854556 MsG0580026050.01.T01:five_prime_UTR 35.0%
TTGTGACACTATGTATTCTC+TGG + Chr5:29857259-29857278 MsG0580026050.01.T01:intron 35.0%
TTTAACTCAACCCCTATTCA+TGG - Chr5:29860226-29860245 None:intergenic 35.0%
! ACCTTACGTTTTCCAATTTG+AGG + Chr5:29860639-29860658 MsG0580026050.01.T01:intron 35.0%
! ACTCTCGAGTTTGATAACTT+CGG + Chr5:29857599-29857618 MsG0580026050.01.T01:intron 35.0%
! AGCCAAACAAAAAAAAGTGC+AGG - Chr5:29855269-29855288 None:intergenic 35.0%
! ATAGCTGCTATTTGACAACA+CGG - Chr5:29854894-29854913 None:intergenic 35.0%
! ATGCCATTTGCATAAGAAGT+GGG + Chr5:29859330-29859349 MsG0580026050.01.T01:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - Chr5:29855268-29855287 None:intergenic 35.0%
! TACAGTTTTACAAAAGACCC+TGG - Chr5:29857554-29857573 None:intergenic 35.0%
! TATGCCATTTGCATAAGAAG+TGG + Chr5:29859329-29859348 MsG0580026050.01.T01:intron 35.0%
! TGAACACAACACACTTTTGA+CGG - Chr5:29860890-29860909 None:intergenic 35.0%
! TGTTGATGAAAGAGTGAGTT+GGG - Chr5:29854199-29854218 None:intergenic 35.0%
! TTACGTTTTCCAATTTGAGG+TGG + Chr5:29860642-29860661 MsG0580026050.01.T01:intron 35.0%
! TTTTAACAGCGGTTTACAGA+AGG - Chr5:29855332-29855351 None:intergenic 35.0%
!! CTAGGAACTAAGAAGTACTA+TGG - Chr5:29857052-29857071 None:intergenic 35.0%
!! TTGTGTGTTTTTGTAGTCAG+GGG + Chr5:29854712-29854731 MsG0580026050.01.T01:intron 35.0%
!!! CCGTCTGTTTTTTTTAACAG+CGG - Chr5:29855343-29855362 None:intergenic 35.0%
!!! CCTGCATTTACACCATTTTT+TGG - Chr5:29856272-29856291 None:intergenic 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + Chr5:29855264-29855283 MsG0580026050.01.T01:intron 35.0%
!!! TCTTTTTTTTCTCCTCAGTG+AGG + Chr5:29860199-29860218 MsG0580026050.01.T01:intron 35.0%
AAATGATTGGAGCAGAAAGC+AGG + Chr5:29854796-29854815 MsG0580026050.01.T01:CDS 40.0%
AACACGACGATACAAGAGAT+AGG + Chr5:29855504-29855523 MsG0580026050.01.T01:intron 40.0%
AATCCATTCTTTACCTCGTG+TGG + Chr5:29854228-29854247 MsG0580026050.01.T01:five_prime_UTR 40.0%
ACACGACGATACAAGAGATA+GGG + Chr5:29855505-29855524 MsG0580026050.01.T01:intron 40.0%
ACATGTGCCCTTACATGTTA+AGG - Chr5:29858677-29858696 None:intergenic 40.0%
ACCAGCAGCAACTTAAGATT+TGG - Chr5:29856429-29856448 None:intergenic 40.0%
AGAGAAAGTTTGTGTCACAG+GGG - Chr5:29856473-29856492 None:intergenic 40.0%
AGGACTGCATATCAATTCTC+AGG - Chr5:29855907-29855926 None:intergenic 40.0%
AGTGAACTTAGAGTAGAGAG+AGG + Chr5:29855974-29855993 MsG0580026050.01.T01:intron 40.0%
AGTTCTACACCACCTCAAAT+TGG - Chr5:29860654-29860673 None:intergenic 40.0%
ATCCATTCTTTACCTCGTGT+GGG + Chr5:29854229-29854248 MsG0580026050.01.T01:five_prime_UTR 40.0%
CACAAAAGAACGAAAGATGG+TGG - Chr5:29857220-29857239 None:intergenic 40.0%
CAGTTAGAGAATTGCCACTA+AGG + Chr5:29854508-29854527 MsG0580026050.01.T01:intron 40.0%
CATTCACCTTATTGCCTCAT+TGG - Chr5:29857136-29857155 None:intergenic 40.0%
CTATAGCATTGTAGTGCAGT+GGG + Chr5:29855081-29855100 MsG0580026050.01.T01:intron 40.0%
GAAGAGAAAGTTTGTGTCAC+AGG - Chr5:29856475-29856494 None:intergenic 40.0%
GAAGATGAGAAGAAGGTTGA+GGG - Chr5:29854328-29854347 None:intergenic 40.0%
GAAGCCAAATCTGATTGCTT+TGG - Chr5:29855725-29855744 None:intergenic 40.0%
GAAGTTATATTAGTGCAGGG+TGG - Chr5:29858907-29858926 None:intergenic 40.0%
GAATCAAAACAAAGGTAGGG+GGG - Chr5:29859085-29859104 None:intergenic 40.0%
GATAACTTCGGACTAACTCA+AGG + Chr5:29857611-29857630 MsG0580026050.01.T01:intron 40.0%
GATGCTCAATCAGAACTCAA+GGG + Chr5:29855935-29855954 MsG0580026050.01.T01:intron 40.0%
GCTTGAAAATATCAGAGCCA+TGG - Chr5:29855840-29855859 None:intergenic 40.0%
GTAACTGTGTTCATCAGCAA+TGG - Chr5:29856058-29856077 None:intergenic 40.0%
GTAGTTGTTGTATAGGACTG+TGG - Chr5:29854162-29854181 None:intergenic 40.0%
GTGTCACAGGGGAAAATTTA+AGG - Chr5:29856462-29856481 None:intergenic 40.0%
GTTAACTCACAGAAACGTAC+GGG + Chr5:29856800-29856819 MsG0580026050.01.T01:intron 40.0%
GTTGGTCGTTCAGTTTACAA+AGG + Chr5:29854536-29854555 MsG0580026050.01.T01:five_prime_UTR 40.0%
TACCTCCAGAATTCACTTCA+TGG + Chr5:29854584-29854603 MsG0580026050.01.T01:five_prime_UTR 40.0%
TAGTGAATACCTCTGTTCCA+TGG + Chr5:29855820-29855839 MsG0580026050.01.T01:intron 40.0%
TATGCAGTCTGCTAATGTTC+TGG + Chr5:29860821-29860840 MsG0580026050.01.T01:intron 40.0%
TCAAATAGGAAGGGATTTGG+TGG + Chr5:29858077-29858096 MsG0580026050.01.T01:intron 40.0%
TCCAATCATTTGGCAAAACC+CGG - Chr5:29854787-29854806 None:intergenic 40.0%
TCTGCCAAAGCAATCAGATT+TGG + Chr5:29855718-29855737 MsG0580026050.01.T01:intron 40.0%
TGAAGAGGAAGATGAGAAGA+AGG - Chr5:29854335-29854354 None:intergenic 40.0%
TGCTTTCTGCTCCAATCATT+TGG - Chr5:29854797-29854816 None:intergenic 40.0%
TGTTCACTTCCTTTGCAGAT+GGG - Chr5:29857026-29857045 None:intergenic 40.0%
TTCTTCTCATCTTCCTCTTC+AGG + Chr5:29854334-29854353 MsG0580026050.01.T01:five_prime_UTR 40.0%
TTGTTCACTTCCTTTGCAGA+TGG - Chr5:29857027-29857046 None:intergenic 40.0%
TTTATCATGCCATGCCTCTT+AGG + Chr5:29859877-29859896 MsG0580026050.01.T01:intron 40.0%
! AAAAGTGTGTTGTGTTCAGG+TGG + Chr5:29860892-29860911 MsG0580026050.01.T01:intron 40.0%
! ACAATAAAATTGGCTTCGCC+CGG + Chr5:29859509-29859528 MsG0580026050.01.T01:intron 40.0%
! ACCAAATCTTAAGTTGCTGC+TGG + Chr5:29856425-29856444 MsG0580026050.01.T01:intron 40.0%
! ACGATCCTTTTATGGGTAGA+AGG + Chr5:29857944-29857963 MsG0580026050.01.T01:intron 40.0%
! AGGGGGGGAATGAAATTTTA+GGG + Chr5:29855524-29855543 MsG0580026050.01.T01:intron 40.0%
! CGATGATATTTTGTGCACTG+TGG - Chr5:29856954-29856973 None:intergenic 40.0%
! GGTCCCTACATTTACACTTT+TGG + Chr5:29855236-29855255 MsG0580026050.01.T01:intron 40.0%
! GTCAAAAGTGTGTTGTGTTC+AGG + Chr5:29860889-29860908 MsG0580026050.01.T01:intron 40.0%
! GTGTTGATGAAAGAGTGAGT+TGG - Chr5:29854200-29854219 None:intergenic 40.0%
! TAATGTTCTGGACAGCAAAC+AGG + Chr5:29860833-29860852 MsG0580026050.01.T01:intron 40.0%
! TAGGGGGGGAATGAAATTTT+AGG + Chr5:29855523-29855542 MsG0580026050.01.T01:intron 40.0%
!! GACTTGTTATGCAGTGATGA+AGG + Chr5:29858736-29858755 MsG0580026050.01.T01:intron 40.0%
!! TGAATAACATGGTGGGTCTT+TGG - Chr5:29860272-29860291 None:intergenic 40.0%
!!! TGGCTCTGATATTTTCAAGC+TGG + Chr5:29855840-29855859 MsG0580026050.01.T01:intron 40.0%
!!! TTTTGTTTTTGTGTGCCACG+TGG - Chr5:29855393-29855412 None:intergenic 40.0%
AACCTAACTCAAGGGAGTTG+AGG + Chr5:29857527-29857546 MsG0580026050.01.T01:intron 45.0%
AAGGAATGTTACCAACACGG+TGG + Chr5:29860925-29860944 MsG0580026050.01.T01:CDS 45.0%
ACGACGATACAAGAGATAGG+GGG + Chr5:29855507-29855526 MsG0580026050.01.T01:intron 45.0%
ACGTCAGTCTAACACACTGA+AGG - Chr5:29859629-29859648 None:intergenic 45.0%
ATATCAGAGCCATGGAACAG+AGG - Chr5:29855832-29855851 None:intergenic 45.0%
ATTGCCACTAAGGGTTACGT+TGG + Chr5:29854518-29854537 MsG0580026050.01.T01:five_prime_UTR 45.0%
CACGACGATACAAGAGATAG+GGG + Chr5:29855506-29855525 MsG0580026050.01.T01:intron 45.0%
CATTAAGCACCCATCTGCAA+AGG + Chr5:29857014-29857033 MsG0580026050.01.T01:intron 45.0%
CATTGTAGTGCAGTGGGATT+TGG + Chr5:29855087-29855106 MsG0580026050.01.T01:intron 45.0%
CCATTTGCATAAGAAGTGGG+AGG + Chr5:29859333-29859352 MsG0580026050.01.T01:intron 45.0%
CCCACAAGAACTAAGATCCT+CGG - Chr5:29856080-29856099 None:intergenic 45.0%
CCTCCCACTTCTTATGCAAA+TGG - Chr5:29859336-29859355 None:intergenic 45.0%
CTCCATGAAGTGAATTCTGG+AGG - Chr5:29854589-29854608 None:intergenic 45.0%
CTTAGTTCCTAGCACAAACG+AGG + Chr5:29857060-29857079 MsG0580026050.01.T01:intron 45.0%
GAAGCTGCTGTTCTTGTCAT+TGG + Chr5:29860720-29860739 MsG0580026050.01.T01:CDS 45.0%
GAAGTGGGAGGAAATCTTCA+AGG + Chr5:29859345-29859364 MsG0580026050.01.T01:intron 45.0%
GAGAAGGAGTCAGTGCAAAA+TGG - Chr5:29855575-29855594 None:intergenic 45.0%
GCTATAGCATTGTAGTGCAG+TGG + Chr5:29855080-29855099 MsG0580026050.01.T01:intron 45.0%
GCTTCGAGGTTCTCAATTTG+AGG + Chr5:29855740-29855759 MsG0580026050.01.T01:intron 45.0%
GGAAGATGAGAAGAAGGTTG+AGG - Chr5:29854329-29854348 None:intergenic 45.0%
GGATGCTCAATCAGAACTCA+AGG + Chr5:29855934-29855953 MsG0580026050.01.T01:intron 45.0%
GTAGGGTGAAAATACACAGC+TGG - Chr5:29856631-29856650 None:intergenic 45.0%
GTTGAGGTGGAGGAATGTTT+GGG - Chr5:29854304-29854323 None:intergenic 45.0%
GTTGTTGTATAGGACTGTGG+TGG - Chr5:29854159-29854178 None:intergenic 45.0%
TCAATCAGAACTCAAGGGAG+TGG + Chr5:29855940-29855959 MsG0580026050.01.T01:intron 45.0%
TCACACCAACAGAAACGAGA+AGG - Chr5:29855591-29855610 None:intergenic 45.0%
TCATTGCAAACTTGCAACCG+TGG - Chr5:29857111-29857130 None:intergenic 45.0%
TCTAACACACTGAAGGTCTC+CGG - Chr5:29859622-29859641 None:intergenic 45.0%
TGAATGCAGAGCTGCTATCA+AGG + Chr5:29860694-29860713 MsG0580026050.01.T01:intron 45.0%
TGACTCCTTCTCGTTTCTGT+TGG + Chr5:29855583-29855602 MsG0580026050.01.T01:intron 45.0%
! AACTGGTTTCGTGGTGTAGT+TGG - Chr5:29859657-29859676 None:intergenic 45.0%
! ACCGAGGATCTTAGTTCTTG+TGG + Chr5:29856076-29856095 MsG0580026050.01.T01:intron 45.0%
! ACGCTGGCCTCTAAATAAGT+AGG - Chr5:29859153-29859172 None:intergenic 45.0%
! AGAGTGAGTTGGGACTGAAA+TGG - Chr5:29854189-29854208 None:intergenic 45.0%
! AGCAATCAGATTTGGCTTCG+AGG + Chr5:29855726-29855745 MsG0580026050.01.T01:intron 45.0%
! CCGAGGATCTTAGTTCTTGT+GGG + Chr5:29856077-29856096 MsG0580026050.01.T01:intron 45.0%
! CGAGGATCTTAGTTCTTGTG+GGG + Chr5:29856078-29856097 MsG0580026050.01.T01:intron 45.0%
! GAGTGAGTTGGGACTGAAAT+GGG - Chr5:29854188-29854207 None:intergenic 45.0%
! GTTTGGGTTTGGAAAAGCTC+AGG - Chr5:29854288-29854307 None:intergenic 45.0%
! TGAATTTGAGGTGCGACCAT+TGG + Chr5:29856000-29856019 MsG0580026050.01.T01:intron 45.0%
! TTCATGGACTGCTGAGGAAA+AGG + Chr5:29856032-29856051 MsG0580026050.01.T01:intron 45.0%
!! AAGGTGGTGCTGGGTTTTAT+TGG - Chr5:29860624-29860643 None:intergenic 45.0%
!! AGAGAGAGGCGTTGAATTTG+AGG + Chr5:29855988-29856007 MsG0580026050.01.T01:intron 45.0%
!! CAAACTCCGCTTTTGTGACA+GGG - Chr5:29859004-29859023 None:intergenic 45.0%
!! CAAAGGCATTCCAACCTAAG+AGG - Chr5:29859894-29859913 None:intergenic 45.0%
!! TGGCTTTATGGAGTCAGCAA+AGG - Chr5:29859911-29859930 None:intergenic 45.0%
!! AAAAATAAAAAATAAAGAAA+GGG + Chr5:29855465-29855484 MsG0580026050.01.T01:intron 5.0%
!! AAAAATATATGAAATTTAAT+TGG - Chr5:29860480-29860499 None:intergenic 5.0%
!! AAAAATTAAAACAATAAAAT+TGG + Chr5:29859499-29859518 MsG0580026050.01.T01:intron 5.0%
!! TAAAAATAAAAAATAAAGAA+AGG + Chr5:29855464-29855483 MsG0580026050.01.T01:intron 5.0%
!!! AAATTTTGTAAAATTATAAA+GGG - Chr5:29858708-29858727 None:intergenic 5.0%
!!! AATTATAATATATATTTTCT+AGG + Chr5:29855198-29855217 MsG0580026050.01.T01:intron 5.0%
AACTCAAGGGAGTTGAGGAC+AGG + Chr5:29857532-29857551 MsG0580026050.01.T01:intron 50.0%
ACGACCAACGTAACCCTTAG+TGG - Chr5:29854525-29854544 None:intergenic 50.0%
ACTCAAGGGAGTTGAGGACA+GGG + Chr5:29857626-29857645 MsG0580026050.01.T01:intron 50.0%
AGACTGCTTGAGAGAGGTCA+TGG + Chr5:29858170-29858189 MsG0580026050.01.T01:intron 50.0%
ATTGCTTTGGCAGAACGAGG+TGG - Chr5:29855712-29855731 None:intergenic 50.0%
ATTTGGCAAAACCCGGCAGA+AGG - Chr5:29854780-29854799 None:intergenic 50.0%
CAAAGCCAATCTTCCGCGAA+TGG + Chr5:29859759-29859778 MsG0580026050.01.T01:intron 50.0%
CAAAGGGAAAGCTGTGCTCA+CGG + Chr5:29854553-29854572 MsG0580026050.01.T01:five_prime_UTR 50.0%
CACAGAAACGTACGGGTTTG+AGG + Chr5:29856807-29856826 MsG0580026050.01.T01:intron 50.0%
CAGGTGCTCACGGTTAACTA+TGG + Chr5:29860852-29860871 MsG0580026050.01.T01:intron 50.0%
CGACGATACAAGAGATAGGG+GGG + Chr5:29855508-29855527 MsG0580026050.01.T01:intron 50.0%
CGTTGAGGTGGAGGAATGTT+TGG - Chr5:29854305-29854324 None:intergenic 50.0%
CTCAGTGAGGCCCATGAATA+GGG + Chr5:29860212-29860231 MsG0580026050.01.T01:intron 50.0%
CTGATTGCTTTGGCAGAACG+AGG - Chr5:29855715-29855734 None:intergenic 50.0%
CTGCATATATGGGCCCTGTT+TGG - Chr5:29858395-29858414 None:intergenic 50.0%
CTTGTGAGACTGCTTGAGAG+AGG + Chr5:29858164-29858183 MsG0580026050.01.T01:intron 50.0%
GACCCACACGAGGTAAAGAA+TGG - Chr5:29854234-29854253 None:intergenic 50.0%
GACGATACAAGAGATAGGGG+GGG + Chr5:29855509-29855528 MsG0580026050.01.T01:intron 50.0%
GCATTCCAACCTAAGAGGCA+TGG - Chr5:29859889-29859908 None:intergenic 50.0%
GCTGATGAACACAGTTACCG+AGG + Chr5:29856060-29856079 MsG0580026050.01.T01:intron 50.0%
GGAAAACGTAAGGTGGTGCT+GGG - Chr5:29860633-29860652 None:intergenic 50.0%
GGACTAACTCAAGGGAGTTG+AGG + Chr5:29857620-29857639 MsG0580026050.01.T01:intron 50.0%
GGTTTCAGCTAGTCAGAGCT+AGG - Chr5:29857161-29857180 None:intergenic 50.0%
GTCCTCAACTCCCTTGAGTT+AGG - Chr5:29857532-29857551 None:intergenic 50.0%
TCAGTGAGGCCCATGAATAG+GGG + Chr5:29860213-29860232 MsG0580026050.01.T01:intron 50.0%
TCATGCCATGCCTCTTAGGT+TGG + Chr5:29859881-29859900 MsG0580026050.01.T01:intron 50.0%
TCCATGACCTCGTTTGTGCT+AGG - Chr5:29857070-29857089 None:intergenic 50.0%
TCCTAGCACAAACGAGGTCA+TGG + Chr5:29857066-29857085 MsG0580026050.01.T01:intron 50.0%
TCTCTCTCTCTCTCTACCCT+TGG + Chr5:29859056-29859075 MsG0580026050.01.T01:intron 50.0%
TCTTCCAAGTGCTCCAACGA+GGG + Chr5:29857185-29857204 MsG0580026050.01.T01:intron 50.0%
TGATCCACAGCAGGACTGTT+CGG + Chr5:29860770-29860789 MsG0580026050.01.T01:CDS 50.0%
TGGAAAACGTAAGGTGGTGC+TGG - Chr5:29860634-29860653 None:intergenic 50.0%
TTCAGGTGGCGATTGCTTCA+AGG + Chr5:29860906-29860925 MsG0580026050.01.T01:intron 50.0%
! CTACAGTTTGCTCCTTCTGC+CGG + Chr5:29854765-29854784 MsG0580026050.01.T01:CDS 50.0%
! GCCGGGTTTTGCCAAATGAT+TGG + Chr5:29854783-29854802 MsG0580026050.01.T01:CDS 50.0%
! GGTGGAGGAATGTTTGGGTT+TGG - Chr5:29854299-29854318 None:intergenic 50.0%
! TACAGTTTGCTCCTTCTGCC+GGG + Chr5:29854766-29854785 MsG0580026050.01.T01:CDS 50.0%
! TTGGAGCACTTGGAAGAGCT+AGG - Chr5:29857182-29857201 None:intergenic 50.0%
!! GCAAACTCCGCTTTTGTGAC+AGG - Chr5:29859005-29859024 None:intergenic 50.0%
!! GTTACCAACACGGTGGACTA+CGG + Chr5:29860932-29860951 MsG0580026050.01.T01:CDS 50.0%
AAAGGTAGGGGGGTGACCAA+GGG - Chr5:29859075-29859094 None:intergenic 55.0%
AAGGTGGAGCCACTTCACGA+CGG + Chr5:29858776-29858795 MsG0580026050.01.T01:intron 55.0%
ACCAGTTATTGCACGCCACG+TGG + Chr5:29855375-29855394 MsG0580026050.01.T01:intron 55.0%
ACTCAAGGGAGTTGAGGACC+AGG + Chr5:29857533-29857552 MsG0580026050.01.T01:intron 55.0%
AGGGACCATTCGCGGAAGAT+TGG - Chr5:29859767-29859786 None:intergenic 55.0%
CCATGAACGACTCGCACCAA+TGG - Chr5:29856019-29856038 None:intergenic 55.0%
CCATTGGTGCGAGTCGTTCA+TGG + Chr5:29856016-29856035 MsG0580026050.01.T01:intron 55.0%
CCTATTCATGGGCCTCACTG+AGG - Chr5:29860214-29860233 None:intergenic 55.0%
CCTCAGTGAGGCCCATGAAT+AGG + Chr5:29860211-29860230 MsG0580026050.01.T01:intron 55.0%
CGTGCAATAACTGGTCCACG+TGG - Chr5:29855370-29855389 None:intergenic 55.0%
CTCAAGGGAGTTGAGGACCA+GGG + Chr5:29857534-29857553 MsG0580026050.01.T01:intron 55.0%
CTCTTCCAAGTGCTCCAACG+AGG + Chr5:29857184-29857203 MsG0580026050.01.T01:intron 55.0%
CTTCCAAGTGCTCCAACGAG+GGG + Chr5:29857186-29857205 MsG0580026050.01.T01:intron 55.0%
GAACAGTCCTGCTGTGGATC+AGG - Chr5:29860771-29860790 None:intergenic 55.0%
GGACAGCAAACAGGTGCTCA+CGG + Chr5:29860842-29860861 MsG0580026050.01.T01:intron 55.0%
GGGTTTGGAAAAGCTCAGGC+TGG - Chr5:29854284-29854303 None:intergenic 55.0%
GTATGGCCACAGTTCGAGTC+CGG - Chr5:29859531-29859550 None:intergenic 55.0%
GTGCAAGAGATGAGCTGCAG+TGG + Chr5:29860742-29860761 MsG0580026050.01.T01:CDS 55.0%
TATGGCCACAGTTCGAGTCC+GGG - Chr5:29859530-29859549 None:intergenic 55.0%
TGTAATGGTCACGGGCCTGT+TGG + Chr5:29858112-29858131 MsG0580026050.01.T01:intron 55.0%
TGTTGTCGAGGGACCATTCG+CGG - Chr5:29859775-29859794 None:intergenic 55.0%
TTTGCCGTAGTCCACCGTGT+TGG - Chr5:29860939-29860958 None:intergenic 55.0%
! AAAACAGACGGAGTGCCACG+TGG + Chr5:29855352-29855371 MsG0580026050.01.T01:intron 55.0%
! GAGTCGTTCATGGACTGCTG+AGG + Chr5:29856026-29856045 MsG0580026050.01.T01:intron 55.0%
!! CACGGTGGACTACGGCAAAA+AGG + Chr5:29860940-29860959 MsG0580026050.01.T01:CDS 55.0%
!! GAAGAAGGTTGAGGGCGTTG+AGG - Chr5:29854320-29854339 None:intergenic 55.0%
AGGTGAGGTTGGGGGGAAAG+TGG - Chr5:29854257-29854276 None:intergenic 60.0%
CAAAGGTAGGGGGGTGACCA+AGG - Chr5:29859076-29859095 None:intergenic 60.0%
CTCACCGAACAGTCCTGCTG+TGG - Chr5:29860777-29860796 None:intergenic 60.0%
GAAAAGCTCAGGCTGGCGAC+AGG - Chr5:29854277-29854296 None:intergenic 60.0%
GAGCCACTTCACGACGGTTC+CGG + Chr5:29858782-29858801 MsG0580026050.01.T01:intron 60.0%
GCCACGTGGCGTGCAATAAC+TGG - Chr5:29855379-29855398 None:intergenic 60.0%
GCTTTGGCAGAACGAGGTGG+AGG - Chr5:29855709-29855728 None:intergenic 60.0%
GGTGAGGTTGGGGGGAAAGT+GGG - Chr5:29854256-29854275 None:intergenic 60.0%
TGACCGGAACCGTCGTGAAG+TGG - Chr5:29858788-29858807 None:intergenic 60.0%
! AAGGTCTCCGGTTCGAGTCC+GGG - Chr5:29859610-29859629 None:intergenic 60.0%
! AGTCCCCTCGTTGGAGCACT+TGG - Chr5:29857192-29857211 None:intergenic 60.0%
! GAAGGTCTCCGGTTCGAGTC+CGG - Chr5:29859611-29859630 None:intergenic 60.0%
!! GAAGGTTGAGGGCGTTGAGG+TGG - Chr5:29854317-29854336 None:intergenic 60.0%
AGGCTGGCGACAGGTGAGGT+TGG - Chr5:29854268-29854287 None:intergenic 65.0%
CTGGCGACAGGTGAGGTTGG+GGG - Chr5:29854265-29854284 None:intergenic 65.0%
CTTCGCCCGGACTCGAACTG+TGG + Chr5:29859522-29859541 MsG0580026050.01.T01:intron 65.0%
GCTGGCGACAGGTGAGGTTG+GGG - Chr5:29854266-29854285 None:intergenic 65.0%
GGCTGGCGACAGGTGAGGTT+GGG - Chr5:29854267-29854286 None:intergenic 65.0%
GGGAAAGTGGGACCCACACG+AGG - Chr5:29854244-29854263 None:intergenic 65.0%
GTGGCTGCCTGATCCACAGC+AGG + Chr5:29860761-29860780 MsG0580026050.01.T01:CDS 65.0%
GTGGGACTGAGTCCCCTCGT+TGG - Chr5:29857201-29857220 None:intergenic 65.0%
TGGCGACAGGTGAGGTTGGG+GGG - Chr5:29854264-29854283 None:intergenic 65.0%
!! GGTTGAGGGCGTTGAGGTGG+AGG - Chr5:29854314-29854333 None:intergenic 65.0%
GCTCAGGCTGGCGACAGGTG+AGG - Chr5:29854272-29854291 None:intergenic 70.0%
GGCTTCGCCCGGACTCGAAC+CGG + Chr5:29859520-29859539 MsG0580026050.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 29854061 29860967 29854061 ID=MsG0580026050.01;Name=MsG0580026050.01
Chr5 mRNA 29854061 29860967 29854061 ID=MsG0580026050.01.T01;Parent=MsG0580026050.01;Name=MsG0580026050.01.T01;_AED=0.52;_eAED=0.56;_QI=419|0.14|0.37|0.75|0|0|8|0|145
Chr5 exon 29854061 29854355 29854061 ID=MsG0580026050.01.T01:exon:33597;Parent=MsG0580026050.01.T01
Chr5 exon 29854511 29854607 29854511 ID=MsG0580026050.01.T01:exon:33598;Parent=MsG0580026050.01.T01
Chr5 exon 29854732 29854817 29854732 ID=MsG0580026050.01.T01:exon:33599;Parent=MsG0580026050.01.T01
Chr5 exon 29857682 29857752 29857682 ID=MsG0580026050.01.T01:exon:33600;Parent=MsG0580026050.01.T01
Chr5 exon 29857872 29857958 29857872 ID=MsG0580026050.01.T01:exon:33601;Parent=MsG0580026050.01.T01
Chr5 exon 29858958 29859045 29858958 ID=MsG0580026050.01.T01:exon:33602;Parent=MsG0580026050.01.T01
Chr5 exon 29860716 29860791 29860716 ID=MsG0580026050.01.T01:exon:33603;Parent=MsG0580026050.01.T01
Chr5 exon 29860911 29860967 29860911 ID=MsG0580026050.01.T01:exon:33604;Parent=MsG0580026050.01.T01
Chr5 five_prime_UTR 29854061 29854355 29854061 ID=MsG0580026050.01.T01:five_prime_utr;Parent=MsG0580026050.01.T01
Chr5 five_prime_UTR 29854511 29854607 29854511 ID=MsG0580026050.01.T01:five_prime_utr;Parent=MsG0580026050.01.T01
Chr5 five_prime_UTR 29854732 29854758 29854732 ID=MsG0580026050.01.T01:five_prime_utr;Parent=MsG0580026050.01.T01
Chr5 CDS 29854759 29854817 29854759 ID=MsG0580026050.01.T01:cds;Parent=MsG0580026050.01.T01
Chr5 CDS 29857682 29857752 29857682 ID=MsG0580026050.01.T01:cds;Parent=MsG0580026050.01.T01
Chr5 CDS 29857872 29857958 29857872 ID=MsG0580026050.01.T01:cds;Parent=MsG0580026050.01.T01
Chr5 CDS 29858958 29859045 29858958 ID=MsG0580026050.01.T01:cds;Parent=MsG0580026050.01.T01
Chr5 CDS 29860716 29860791 29860716 ID=MsG0580026050.01.T01:cds;Parent=MsG0580026050.01.T01
Chr5 CDS 29860911 29860967 29860911 ID=MsG0580026050.01.T01:cds;Parent=MsG0580026050.01.T01
Gene Sequence

>MsG0580026050.01.T01

ATGTTGCTACAGTTTGCTCCTTCTGCCGGGTTTTGCCAAATGATTGGAGCAGAAAGCAGGTCTATGTGTTCGTTTTTGCTTATGTTTGGTGAAATTAAGGAACTTCTATATTGTTTTTTGAATGAGCCTTGTATTAAACTATCTGTGGATGAAATGGGAAATCTAATTAATCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCACGATCCTTTTATGGGTGTTCAAAACAAGCTCAAGAACATCGATGAGAACATATTTATCCCTGTCACAAAAGCGGAGTTTGCAGTTTCAATTCACTTTTCAATGATTGAAGCTGCTGTTCTTGTCATTGGTGCAAGAGATGAGCTGCAGTGGCTGCCTGATCCACAGCAGGACTGTTCGGTGGCGATTGCTTCAAGGAATGTTACCAACACGGTGGACTACGGCAAAAAGGAGTAA

Protein sequence

>MsG0580026050.01.T01

MLLQFAPSAGFCQMIGAESRSMCSFLLMFGEIKELLYCFLNEPCIKLSVDEMGNLINLGARESCEFFHDPFMGVQNKLKNIDENIFIPVTKAEFAVSIHFSMIEAAVLVIGARDELQWLPDPQQDCSVAIASRNVTNTVDYGKKE*