AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039432.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039432.01.T01 MTR_7g073380 89.189 296 20 2 1 286 1 294 0.0 545
MsG0780039432.01.T01 MTR_7g073430 87.108 287 32 3 1 286 1 283 0.0 510
MsG0780039432.01.T01 MTR_0002s1250 44.105 229 106 5 15 233 5 221 3.45e-61 195
MsG0780039432.01.T01 MTR_8g032510 46.009 213 105 5 16 222 7 215 1.50e-56 184
MsG0780039432.01.T01 MTR_8g005750 40.942 276 137 8 16 280 4 264 1.58e-56 183
MsG0780039432.01.T01 MTR_2g075690 39.683 252 118 8 13 233 12 260 7.00e-49 164
MsG0780039432.01.T01 MTR_2g075700 38.760 258 130 5 4 233 2 259 3.96e-45 155
MsG0780039432.01.T01 MTR_2g075680 36.803 269 132 6 13 245 12 278 3.88e-43 149
MsG0780039432.01.T01 MTR_5g067700 39.648 227 101 12 17 241 14 206 1.65e-38 135
MsG0780039432.01.T01 MTR_3g093830 40.437 183 88 5 23 193 23 196 5.77e-38 136
MsG0780039432.01.T01 MTR_2g075750 54.369 103 46 1 110 211 13 115 5.18e-35 125
MsG0780039432.01.T01 MTR_2g075610 54.369 103 46 1 110 211 14 116 7.18e-34 122
MsG0780039432.01.T01 MTR_7g117200 31.980 197 106 4 14 197 9 190 1.21e-26 106
MsG0780039432.01.T01 MTR_3g090860 32.995 197 96 5 17 186 7 194 1.09e-25 104
MsG0780039432.01.T01 MTR_8g027860 34.392 189 98 5 17 184 12 195 4.34e-23 97.4
MsG0780039432.01.T01 MTR_8g099350 31.746 189 99 5 17 184 12 191 2.97e-21 92.4
MsG0780039432.01.T01 MTR_5g067680 38.889 108 61 1 77 184 159 261 7.37e-18 82.8
MsG0780039432.01.T01 MTR_7g028415 51.667 60 26 1 124 183 92 148 2.06e-14 70.1
MsG0780039432.01.T01 MTR_7g028710 51.667 60 26 1 124 183 92 148 2.06e-14 70.1
MsG0780039432.01.T01 MTR_5g073620 46.875 64 34 0 123 186 670 733 2.44e-14 73.6
MsG0780039432.01.T01 MTR_8g092140 40.187 107 48 6 100 205 142 233 3.25e-13 68.2
MsG0780039432.01.T01 MTR_8g096730 35.088 114 68 3 78 191 26 133 4.56e-13 65.9
MsG0780039432.01.T01 MTR_3g095080 41.176 85 37 3 100 183 151 223 2.56e-12 65.5
MsG0780039432.01.T01 MTR_7g079010 43.077 65 34 1 118 182 134 195 4.25e-12 64.7
MsG0780039432.01.T01 MTR_3g095080 41.176 85 37 3 100 183 127 199 4.99e-12 64.3
MsG0780039432.01.T01 MTR_1g086790 46.667 60 29 1 124 183 157 213 5.10e-12 65.5
MsG0780039432.01.T01 MTR_5g043880 47.458 59 28 1 124 182 123 178 6.05e-12 65.1
MsG0780039432.01.T01 MTR_8g007270 33.813 139 62 6 75 207 113 227 6.59e-12 64.3
MsG0780039432.01.T01 MTR_2g088000 34.579 107 67 2 100 206 325 428 7.59e-12 65.9
MsG0780039432.01.T01 MTR_7g110720 34.483 116 73 2 68 182 158 271 1.23e-11 65.1
MsG0780039432.01.T01 MTR_7g109800 46.667 60 29 1 124 183 144 200 1.54e-11 63.9
MsG0780039432.01.T01 MTR_3g053330 36.364 99 60 2 108 206 235 330 2.63e-11 63.9
MsG0780039432.01.T01 MTR_4g094588 47.458 59 28 1 124 182 177 232 4.31e-11 63.2
MsG0780039432.01.T01 MTR_5g091390 45.763 59 29 1 124 182 156 211 4.64e-11 62.8
MsG0780039432.01.T01 MTR_8g028565 39.744 78 43 2 108 183 136 211 6.37e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039432.01.T01 AT3G56400 41.758 182 81 5 16 184 10 179 4.20e-37 134
MsG0780039432.01.T01 AT1G66550 34.016 244 133 10 16 252 8 230 3.80e-28 109
MsG0780039432.01.T01 AT2G40750 37.500 200 92 8 16 184 14 211 8.92e-28 110
MsG0780039432.01.T01 AT2G46400 34.783 184 90 5 17 191 8 170 8.87e-27 106
MsG0780039432.01.T01 AT1G66550 33.197 244 130 10 16 252 8 225 1.45e-26 104
MsG0780039432.01.T01 AT5G01900 35.263 190 95 5 11 189 2 174 2.32e-26 104
MsG0780039432.01.T01 AT5G22570 31.915 235 129 9 16 234 9 228 5.59e-25 101
MsG0780039432.01.T01 AT1G66560 35.465 172 95 5 17 187 9 165 1.68e-23 96.7
MsG0780039432.01.T01 AT1G66600 34.659 176 93 6 16 187 8 165 4.91e-22 92.4
MsG0780039432.01.T01 AT4G11070 30.928 194 110 4 14 184 8 200 1.37e-21 92.8
MsG0780039432.01.T01 AT5G24110 33.129 163 103 3 26 184 12 172 1.30e-19 87.0
MsG0780039432.01.T01 AT2G40740 29.756 205 116 6 18 197 44 245 1.54e-19 86.7
MsG0780039432.01.T01 AT2G40740 29.756 205 116 6 18 197 53 254 1.67e-19 86.7
MsG0780039432.01.T01 AT4G11070 32.787 183 89 5 14 184 8 168 5.35e-19 85.1
MsG0780039432.01.T01 AT1G80590 30.000 200 101 5 15 212 7 169 9.25e-19 83.6
MsG0780039432.01.T01 AT4G23810 45.882 85 38 1 108 184 133 217 1.48e-17 81.6
MsG0780039432.01.T01 AT1G69310 36.585 123 71 4 72 190 90 209 1.07e-13 70.1
MsG0780039432.01.T01 AT1G69310 36.585 123 71 4 72 190 90 209 1.07e-13 70.1
MsG0780039432.01.T01 AT1G69310 36.585 123 71 4 72 190 90 209 1.07e-13 70.1
MsG0780039432.01.T01 AT5G45260 52.632 57 27 0 126 182 1209 1265 2.38e-13 70.9
MsG0780039432.01.T01 AT5G13080 41.667 84 45 2 124 207 66 145 1.30e-12 64.7
MsG0780039432.01.T01 AT5G41570 40.964 83 44 2 100 182 75 152 1.50e-12 65.1
MsG0780039432.01.T01 AT2G37260 45.833 72 35 2 119 190 344 411 2.22e-12 67.4
MsG0780039432.01.T01 AT2G37260 45.833 72 35 2 119 190 264 331 3.01e-12 66.6
MsG0780039432.01.T01 AT2G37260 45.833 72 35 2 119 190 262 329 3.01e-12 66.6
MsG0780039432.01.T01 AT2G46130 45.763 59 29 1 124 182 29 84 4.74e-12 62.0
MsG0780039432.01.T01 AT5G49520 41.791 67 36 1 124 190 220 283 4.78e-12 66.2
MsG0780039432.01.T01 AT1G64000 43.077 65 34 1 118 182 107 168 6.10e-12 63.9
MsG0780039432.01.T01 AT3G01970 38.202 89 44 2 124 212 64 141 9.39e-12 62.4
MsG0780039432.01.T01 AT4G04450 33.929 112 71 2 96 206 168 277 2.18e-11 64.3
MsG0780039432.01.T01 AT2G47260 46.667 60 29 1 124 183 173 229 2.38e-11 63.9
MsG0780039432.01.T01 AT4G39410 38.542 96 44 4 95 190 201 281 2.77e-11 63.5
MsG0780039432.01.T01 AT2G44745 41.667 84 42 3 100 182 122 199 3.23e-11 62.0
MsG0780039432.01.T01 AT4G04450 33.929 112 71 2 96 206 262 371 3.24e-11 63.9
MsG0780039432.01.T01 AT4G18170 36.538 104 54 4 82 182 132 226 3.59e-11 63.2
MsG0780039432.01.T01 AT1G62300 44.595 74 38 2 110 182 296 367 6.31e-11 63.2
MsG0780039432.01.T01 AT1G29860 44.444 63 32 1 124 186 135 194 6.35e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATTCTCATGATCATTT+AGG 0.206318 7:-64027094 MsG0780039432.01.T01:CDS
TTCAAGAAAGTGGCCAATTA+AGG 0.251647 7:+64027038 None:intergenic
GGTGATATTGATAACATTAA+TGG 0.251913 7:-64028833 MsG0780039432.01.T01:CDS
TGCTTTGCAGGAACTATTAC+AGG 0.282092 7:-64027453 MsG0780039432.01.T01:intron
CAATATGATGTTGGCTCAAA+TGG 0.300173 7:-64026889 MsG0780039432.01.T01:three_prime_UTR
CAAGAGTACTTCCATTGTTA+AGG 0.344618 7:-64028666 MsG0780039432.01.T01:CDS
GGCTCAAATGGAACTGGACT+TGG 0.346215 7:-64026877 MsG0780039432.01.T01:three_prime_UTR
CTTTACAAAACAACCTACTA+TGG 0.350539 7:-64027361 MsG0780039432.01.T01:CDS
TGTATGATGATGTCCTTAAT+TGG 0.353206 7:-64027051 MsG0780039432.01.T01:CDS
AAATATATACCTTGGGAAAT+CGG 0.371761 7:+64027849 None:intergenic
ACATCATCATACATGATATC+AGG 0.372411 7:+64027061 None:intergenic
TTTAAAAGATCTTCAGCAAC+TGG 0.373083 7:+64028800 None:intergenic
GAGAATTAGAAAAGGTTGTA+AGG 0.381427 7:+64028771 None:intergenic
CTCTAAAGAATCCTCAGATT+TGG 0.392364 7:+64028697 None:intergenic
TCTAATTAATTTCAAGAAAG+TGG 0.395509 7:+64027028 None:intergenic
AATCTTAGGAAGCTAGATAT+TGG 0.396254 7:+64028982 None:intergenic
GGTCATCAATGGAGAAAGTA+TGG 0.401550 7:-64027892 MsG0780039432.01.T01:CDS
GGAGAATCCTCTATGATCTC+AGG 0.407384 7:+64027310 None:intergenic
CCTTCAAATGATTACCTCTC+TGG 0.419974 7:-64027163 MsG0780039432.01.T01:CDS
GATGTTGGCTCAAATGGAAC+TGG 0.431212 7:-64026883 MsG0780039432.01.T01:three_prime_UTR
AAAGGAGGAGTGCAAGGAAG+AGG 0.462606 7:-64027203 MsG0780039432.01.T01:CDS
CCAGAGAGGTAATCATTTGA+AGG 0.470477 7:+64027163 None:intergenic
TCAGAAAAGTTTCGCAAACA+TGG 0.472351 7:-64027945 MsG0780039432.01.T01:intron
TAATCATTTGAAGGAGGAGG+AGG 0.475507 7:+64027172 None:intergenic
GTGATTGATGAATTACTAAG+AGG 0.485264 7:-64028899 MsG0780039432.01.T01:CDS
AGAAATATTCTGAATGAAAG+TGG 0.485810 7:-64028854 MsG0780039432.01.T01:CDS
AGGTAATCATTTGAAGGAGG+AGG 0.500051 7:+64027169 None:intergenic
CATGGTAGTGGTAGTGGTCG+TGG 0.505554 7:-64028926 MsG0780039432.01.T01:CDS
ACAAGTGTGATGGCCATAGT+AGG 0.510474 7:+64027348 None:intergenic
GAAAATATAGCTCATGGTAG+TGG 0.513286 7:-64028938 MsG0780039432.01.T01:CDS
AAATCAGATCCCTCTGAAGT+TGG 0.516714 7:+64028728 None:intergenic
CTGTGGAAGATGGTCATCAA+TGG 0.520430 7:-64027903 MsG0780039432.01.T01:CDS
CAGAAAAGTTTCGCAAACAT+GGG 0.520924 7:-64027944 MsG0780039432.01.T01:CDS
AGCTAAGGAACATGGAAGAC+TGG 0.529377 7:+64027281 None:intergenic
GAACAAGAGAGAATTAGAAA+AGG 0.530157 7:+64028763 None:intergenic
GTAGAGGCTGTTACAAAAGA+AGG 0.531049 7:-64028640 MsG0780039432.01.T01:intron
ATAGCTCATGGTAGTGGTAG+TGG 0.536599 7:-64028932 MsG0780039432.01.T01:CDS
GTTGTCAAAGCTAAGGAACA+TGG 0.540400 7:+64027273 None:intergenic
TCTGATCGTCCTGTGGAAGA+TGG 0.541946 7:-64027913 MsG0780039432.01.T01:CDS
GGAAAGAGTTGTCAAAGCTA+AGG 0.561012 7:+64027266 None:intergenic
ACTATGTAACAATATGATGT+TGG 0.562103 7:-64026898 MsG0780039432.01.T01:three_prime_UTR
TGCACTCACAAACATGATCA+AGG 0.563442 7:-64027430 MsG0780039432.01.T01:CDS
GAGAATCCTCTATGATCTCA+GGG 0.568526 7:+64027311 None:intergenic
GCAAGATTCTACAAGTGTGA+TGG 0.576779 7:+64027338 None:intergenic
GCCTCTACGTTCCTTAACAA+TGG 0.594370 7:+64028655 None:intergenic
ACAAGTGCAACAAATTCAAG+AGG 0.601952 7:-64027392 MsG0780039432.01.T01:CDS
AGTTTCGCAAACATGGGAGA+AGG 0.609671 7:-64027938 MsG0780039432.01.T01:CDS
CATTGATGACCATCTTCCAC+AGG 0.609995 7:+64027904 None:intergenic
AACATGGAAGACTGGTCACA+AGG 0.611016 7:+64027289 None:intergenic
TTTGCAACTCACCAAATCTG+AGG 0.616026 7:-64028708 MsG0780039432.01.T01:CDS
GCAAAGCCCTGAGATCATAG+AGG 0.632964 7:-64027317 MsG0780039432.01.T01:CDS
TGATTGATGAATTACTAAGA+GGG 0.634644 7:-64028898 MsG0780039432.01.T01:CDS
TCTTACACACCGATTTCCCA+AGG 0.636446 7:-64027858 MsG0780039432.01.T01:intron
GAGAGGTAATCATTTGAAGG+AGG 0.645608 7:+64027166 None:intergenic
GAAGGAGTCTGATCGTCCTG+TGG 0.654687 7:-64027920 MsG0780039432.01.T01:CDS
TCCATTGTTAAGGAACGTAG+AGG 0.656442 7:-64028656 MsG0780039432.01.T01:CDS
CATCAAAAGTGAGTCCAGAG+AGG 0.707648 7:+64027149 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCATTTTTCATTTT+TGG + Chr7:64026948-64026967 None:intergenic 10.0%
!! AACAAAAAAAAATCATATGT+TGG + Chr7:64027444-64027463 None:intergenic 15.0%
!! ACAAAAAAAAATCATATGTT+GGG + Chr7:64027443-64027462 None:intergenic 15.0%
!! TGCTAATTAATACTTATTAT+TGG - Chr7:64027658-64027677 MsG0780039432.01.T01:intron 15.0%
!! TTAATTTCTTTACATCTTAA+AGG - Chr7:64028260-64028279 MsG0780039432.01.T01:intron 15.0%
!!! TCTTTTAGTTAATATGATTT+TGG - Chr7:64027833-64027852 MsG0780039432.01.T01:intron 15.0%
!! AAAAATGAAAATATAGCTCA+TGG - Chr7:64026954-64026973 MsG0780039432.01.T01:three_prime_UTR 20.0%
!! AATACTTTCCAAAGAAAAAA+AGG + Chr7:64027510-64027529 None:intergenic 20.0%
!! ACGAAATAAATAAAAATGAG+AGG + Chr7:64027790-64027809 None:intergenic 20.0%
!! ATGATGAACAATAATTGATA+GGG + Chr7:64027715-64027734 None:intergenic 20.0%
!! CGAAATAAATAAAAATGAGA+GGG + Chr7:64027789-64027808 None:intergenic 20.0%
!! GAAAAACCATATGTTAAAAT+AGG + Chr7:64027397-64027416 None:intergenic 20.0%
!! GACAATCTTAAAAGTAAAAT+GGG + Chr7:64028098-64028117 None:intergenic 20.0%
!! TATTAAGAAAGAAGAATTAG+AGG + Chr7:64028387-64028406 None:intergenic 20.0%
!! TCTAATTAATTTCAAGAAAG+TGG + Chr7:64028873-64028892 None:intergenic 20.0%
!! TGAAAAAGAATTGCATAATT+GGG + Chr7:64027936-64027955 None:intergenic 20.0%
!! TGACAATCTTAAAAGTAAAA+TGG + Chr7:64028099-64028118 None:intergenic 20.0%
!! TTCAAATAGTGAAATTTGAT+TGG + Chr7:64028128-64028147 None:intergenic 20.0%
!! TTTATTTGAAAGTTTAGATG+AGG - Chr7:64027594-64027613 MsG0780039432.01.T01:intron 20.0%
!!! ATTTTTGGTATTGAAATCTT+AGG + Chr7:64026933-64026952 None:intergenic 20.0%
!!! TAAAATGTTAAATGAGTTGA+AGG - Chr7:64028307-64028326 MsG0780039432.01.T01:intron 20.0%
!!! TCTCATTTTTATTTATTTCG+TGG - Chr7:64027789-64027808 MsG0780039432.01.T01:intron 20.0%
! AAAAAAACTCAAAACCAAGT+AGG + Chr7:64027893-64027912 None:intergenic 25.0%
! AAAAATAATCCAACTTCAGA+GGG - Chr7:64027161-64027180 MsG0780039432.01.T01:CDS 25.0%
! AAATATATACCTTGGGAAAT+CGG + Chr7:64028052-64028071 None:intergenic 25.0%
! ACTATGTAACAATATGATGT+TGG - Chr7:64029000-64029019 MsG0780039432.01.T01:five_prime_UTR 25.0%
! ACTCGTATAAATATATACCT+TGG + Chr7:64028060-64028079 None:intergenic 25.0%
! AGAAATATTCTGAATGAAAG+TGG - Chr7:64027044-64027063 MsG0780039432.01.T01:CDS 25.0%
! ATAGTGAAATTTGATTGGAT+TGG + Chr7:64028123-64028142 None:intergenic 25.0%
! CTCGTATAAATATATACCTT+GGG + Chr7:64028059-64028078 None:intergenic 25.0%
! CTGAAAAAGAATTGCATAAT+TGG + Chr7:64027937-64027956 None:intergenic 25.0%
! GATGATGAACAATAATTGAT+AGG + Chr7:64027716-64027735 None:intergenic 25.0%
! TGAATATTTATATGCTTTGC+AGG - Chr7:64028433-64028452 MsG0780039432.01.T01:intron 25.0%
! TGATTGATGAATTACTAAGA+GGG - Chr7:64027000-64027019 MsG0780039432.01.T01:three_prime_UTR 25.0%
!! GGTGATATTGATAACATTAA+TGG - Chr7:64027065-64027084 MsG0780039432.01.T01:CDS 25.0%
!! GTGTTTTTCCTTTTTTTCTT+TGG - Chr7:64027499-64027518 MsG0780039432.01.T01:intron 25.0%
!! TTTTTCATACACACTTTTCA+TGG - Chr7:64027411-64027430 MsG0780039432.01.T01:CDS 25.0%
!!! ACTTGGTTTTGAGTTTTTTT+TGG - Chr7:64027893-64027912 MsG0780039432.01.T01:CDS 25.0%
!!! AGTTGACCTATTTTAACATA+TGG - Chr7:64027388-64027407 MsG0780039432.01.T01:CDS 25.0%
AATCTTAGGAAGCTAGATAT+TGG + Chr7:64026919-64026938 None:intergenic 30.0%
ACACGCAAAAACTTAAACAA+AGG + Chr7:64028926-64028945 None:intergenic 30.0%
ACATCATCATACATGATATC+AGG + Chr7:64028840-64028859 None:intergenic 30.0%
ATACTGCTCATATGTTGTAA+AGG + Chr7:64027688-64027707 None:intergenic 30.0%
CTTGATTCTCATGATCATTT+AGG - Chr7:64028804-64028823 MsG0780039432.01.T01:CDS 30.0%
CTTTACAAAACAACCTACTA+TGG - Chr7:64028537-64028556 MsG0780039432.01.T01:intron 30.0%
GAAAAATAATCCAACTTCAG+AGG - Chr7:64027160-64027179 MsG0780039432.01.T01:CDS 30.0%
GAACAAGAGAGAATTAGAAA+AGG + Chr7:64027138-64027157 None:intergenic 30.0%
GAGAATTAGAAAAGGTTGTA+AGG + Chr7:64027130-64027149 None:intergenic 30.0%
GTGATTGATGAATTACTAAG+AGG - Chr7:64026999-64027018 MsG0780039432.01.T01:three_prime_UTR 30.0%
TTACAACATATGAGCAGTAT+TGG - Chr7:64027688-64027707 MsG0780039432.01.T01:intron 30.0%
TTTAAAAGATCTTCAGCAAC+TGG + Chr7:64027101-64027120 None:intergenic 30.0%
! AGTTGCTGAAGATCTTTTAA+AGG - Chr7:64027100-64027119 MsG0780039432.01.T01:CDS 30.0%
! TGTATGATGATGTCCTTAAT+TGG - Chr7:64028847-64028866 MsG0780039432.01.T01:CDS 30.0%
!! CTGAAGTTGGATTATTTTTC+AGG + Chr7:64027160-64027179 None:intergenic 30.0%
!! TAGTAGGTTGTTTTGTAAAG+AGG + Chr7:64028537-64028556 None:intergenic 30.0%
ACAAGTGCAACAAATTCAAG+AGG - Chr7:64028506-64028525 MsG0780039432.01.T01:intron 35.0%
CAGAAAAGTTTCGCAAACAT+GGG - Chr7:64027954-64027973 MsG0780039432.01.T01:intron 35.0%
GAAAATATAGCTCATGGTAG+TGG - Chr7:64026960-64026979 MsG0780039432.01.T01:three_prime_UTR 35.0%
GATTGTTTCATAGTCCTACT+TGG - Chr7:64027876-64027895 MsG0780039432.01.T01:CDS 35.0%
TATTCACCACATGTGATGAA+AGG - Chr7:64027746-64027765 MsG0780039432.01.T01:intron 35.0%
TCAGAAAAGTTTCGCAAACA+TGG - Chr7:64027953-64027972 MsG0780039432.01.T01:intron 35.0%
TTCAAGAAAGTGGCCAATTA+AGG + Chr7:64028863-64028882 None:intergenic 35.0%
! CTCTAAAGAATCCTCAGATT+TGG + Chr7:64027204-64027223 None:intergenic 35.0%
! TCCTTTTCTCTCAGTGAAAA+AGG - Chr7:64028677-64028696 MsG0780039432.01.T01:CDS 35.0%
! TTTTCTCTCAGTGAAAAAGG+AGG - Chr7:64028680-64028699 MsG0780039432.01.T01:CDS 35.0%
!! CAAGAGTACTTCCATTGTTA+AGG - Chr7:64027232-64027251 MsG0780039432.01.T01:CDS 35.0%
!! CAATATGATGTTGGCTCAAA+TGG - Chr7:64029009-64029028 MsG0780039432.01.T01:five_prime_UTR 35.0%
!! CACTTTTGATGATCCAGAAA+AGG - Chr7:64028761-64028780 MsG0780039432.01.T01:CDS 35.0%
!! TAGGTTGTTTTGTAAAGAGG+TGG + Chr7:64028534-64028553 None:intergenic 35.0%
!! TCCTTTTTCACTGAGAGAAA+AGG + Chr7:64028681-64028700 None:intergenic 35.0%
!!! CGGTGTGTAAGATCTTTTTT+TGG + Chr7:64028032-64028051 None:intergenic 35.0%
!!! GAGAAAAGGACAGTCTTTTT+TGG + Chr7:64028667-64028686 None:intergenic 35.0%
AGGTAATCATTTGAAGGAGG+AGG + Chr7:64028732-64028751 None:intergenic 40.0%
CATAGTCCTTTCATCACATG+TGG + Chr7:64027755-64027774 None:intergenic 40.0%
CCAGAGAGGTAATCATTTGA+AGG + Chr7:64028738-64028757 None:intergenic 40.0%
CCTTCAAATGATTACCTCTC+TGG - Chr7:64028735-64028754 MsG0780039432.01.T01:CDS 40.0%
GAGAATCCTCTATGATCTCA+GGG + Chr7:64028590-64028609 None:intergenic 40.0%
GAGAGGTAATCATTTGAAGG+AGG + Chr7:64028735-64028754 None:intergenic 40.0%
GCAAGATTCTACAAGTGTGA+TGG + Chr7:64028563-64028582 None:intergenic 40.0%
GGAAAGAGTTGTCAAAGCTA+AGG + Chr7:64028635-64028654 None:intergenic 40.0%
GGTCATCAATGGAGAAAGTA+TGG - Chr7:64028006-64028025 MsG0780039432.01.T01:intron 40.0%
GTAGAGGCTGTTACAAAAGA+AGG - Chr7:64027258-64027277 MsG0780039432.01.T01:CDS 40.0%
GTTGTCAAAGCTAAGGAACA+TGG + Chr7:64028628-64028647 None:intergenic 40.0%
TAATCATTTGAAGGAGGAGG+AGG + Chr7:64028729-64028748 None:intergenic 40.0%
TCCATTGTTAAGGAACGTAG+AGG - Chr7:64027242-64027261 MsG0780039432.01.T01:CDS 40.0%
TGCACTCACAAACATGATCA+AGG - Chr7:64028468-64028487 MsG0780039432.01.T01:intron 40.0%
TGCTTTGCAGGAACTATTAC+AGG - Chr7:64028445-64028464 MsG0780039432.01.T01:intron 40.0%
TTTGCAACTCACCAAATCTG+AGG - Chr7:64027190-64027209 MsG0780039432.01.T01:CDS 40.0%
! GATAGTGTGACATCCTTTTC+TGG + Chr7:64028777-64028796 None:intergenic 40.0%
!! AAATCAGATCCCTCTGAAGT+TGG + Chr7:64027173-64027192 None:intergenic 40.0%
!!! AAAGGACAGTCTTTTTTGGC+TGG + Chr7:64028663-64028682 None:intergenic 40.0%
!!! AGTCTTTTTTGGCTGGTGTT+GGG + Chr7:64028656-64028675 None:intergenic 40.0%
ACAAGTGTGATGGCCATAGT+AGG + Chr7:64028553-64028572 None:intergenic 45.0%
AGCTAAGGAACATGGAAGAC+TGG + Chr7:64028620-64028639 None:intergenic 45.0%
AGTTTCGCAAACATGGGAGA+AGG - Chr7:64027960-64027979 MsG0780039432.01.T01:intron 45.0%
CATCAAAAGTGAGTCCAGAG+AGG + Chr7:64028752-64028771 None:intergenic 45.0%
CTGTGGAAGATGGTCATCAA+TGG - Chr7:64027995-64028014 MsG0780039432.01.T01:intron 45.0%
GCCTCTACGTTCCTTAACAA+TGG + Chr7:64027246-64027265 None:intergenic 45.0%
GGAGAATCCTCTATGATCTC+AGG + Chr7:64028591-64028610 None:intergenic 45.0%
! AACATGGAAGACTGGTCACA+AGG + Chr7:64028612-64028631 None:intergenic 45.0%
! AGTGAAAAAGGAGGAGTGCA+AGG - Chr7:64028689-64028708 MsG0780039432.01.T01:CDS 45.0%
! CATTGATGACCATCTTCCAC+AGG + Chr7:64027997-64028016 None:intergenic 45.0%
!! ATAGCTCATGGTAGTGGTAG+TGG - Chr7:64026966-64026985 MsG0780039432.01.T01:three_prime_UTR 45.0%
!! GATGTTGGCTCAAATGGAAC+TGG - Chr7:64029015-64029034 MsG0780039432.01.T01:five_prime_UTR 45.0%
!! TCTTACACACCGATTTCCCA+AGG - Chr7:64028040-64028059 MsG0780039432.01.T01:intron 45.0%
!!! CAGTCTTTTTTGGCTGGTGT+TGG + Chr7:64028657-64028676 None:intergenic 45.0%
GCAAAGCCCTGAGATCATAG+AGG - Chr7:64028581-64028600 MsG0780039432.01.T01:intron 50.0%
GGCTCAAATGGAACTGGACT+TGG - Chr7:64029021-64029040 MsG0780039432.01.T01:five_prime_UTR 50.0%
TCTGATCGTCCTGTGGAAGA+TGG - Chr7:64027985-64028004 MsG0780039432.01.T01:intron 50.0%
! AAAGGAGGAGTGCAAGGAAG+AGG - Chr7:64028695-64028714 MsG0780039432.01.T01:CDS 50.0%
GAAGGAGTCTGATCGTCCTG+TGG - Chr7:64027978-64027997 MsG0780039432.01.T01:intron 55.0%
!! CATGGTAGTGGTAGTGGTCG+TGG - Chr7:64026972-64026991 MsG0780039432.01.T01:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 64026874 64029046 64026874 ID=MsG0780039432.01;Name=MsG0780039432.01
Chr7 mRNA 64026874 64029046 64026874 ID=MsG0780039432.01.T01;Parent=MsG0780039432.01;Name=MsG0780039432.01.T01;_AED=0.48;_eAED=0.48;_QI=77|1|1|1|1|1|3|165|286
Chr7 exon 64028641 64029046 64028641 ID=MsG0780039432.01.T01:exon:15850;Parent=MsG0780039432.01.T01
Chr7 exon 64027859 64027963 64027859 ID=MsG0780039432.01.T01:exon:15851;Parent=MsG0780039432.01.T01
Chr7 exon 64026874 64027465 64026874 ID=MsG0780039432.01.T01:exon:15852;Parent=MsG0780039432.01.T01
Chr7 five_prime_UTR 64028970 64029046 64028970 ID=MsG0780039432.01.T01:five_prime_utr;Parent=MsG0780039432.01.T01
Chr7 CDS 64028641 64028969 64028641 ID=MsG0780039432.01.T01:cds;Parent=MsG0780039432.01.T01
Chr7 CDS 64027859 64027963 64027859 ID=MsG0780039432.01.T01:cds;Parent=MsG0780039432.01.T01
Chr7 CDS 64027039 64027465 64027039 ID=MsG0780039432.01.T01:cds;Parent=MsG0780039432.01.T01
Chr7 three_prime_UTR 64026874 64027038 64026874 ID=MsG0780039432.01.T01:three_prime_utr;Parent=MsG0780039432.01.T01
Gene Sequence

>MsG0780039432.01.T01

ATGAAAAATGAAAATATAGCTCATGGTAGTGGTAGTGGTCGTGGAAAAGTGATTGATGAATTACTAAGAGGGCGTGAACTTGCAAACAAACTTAGAAATATTCTGAATGAAAGTGGTGATATTGATAACATTAATGGATCAGCAACACCAGTTGCTGAAGATCTTTTAAAGGAAGTCCTTACAACCTTTTCTAATTCTCTCTTGTTCCTGAAAAATAATCCAACTTCAGAGGGATCTGATTTGCAACTCACCAAATCTGAGGATTCTTTAGAGAGTAATTGCAAGAGTACTTCCATTGTTAAGGAACGTAGAGGCTGTTACAAAAGAAGAAAAGTTTCGCAAACATGGGAGAAGGAGTCTGATCGTCCTGTGGAAGATGGTCATCAATGGAGAAAGTATGGCCAAAAAAAGATCTTACACACCGATTTCCCAAGGAACTATTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTGCAACAAATTCAAGAGGAACCACCTCTTTACAAAACAACCTACTATGGCCATCACACTTGTAGAATCTTGCAAAGCCCTGAGATCATAGAGGATTCTCCTTGTGACCAGTCTTCCATGTTCCTTAGCTTTGACAACTCTTTCCCAACACCAGCCAAAAAAGACTGTCCTTTTCTCTCAGTGAAAAAGGAGGAGTGCAAGGAAGAGGTTGTTCATCCTCCTCCTCCTTCAAATGATTACCTCTCTGGACTCACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCATTTAGGTGTCAACATTCCTGATATCATGTATGATGATGTCCTTAATTGGCCACTTTCTTGA

Protein sequence

>MsG0780039432.01.T01

MKNENIAHGSGSGRGKVIDELLRGRELANKLRNILNESGDIDNINGSATPVAEDLLKEVLTTFSNSLLFLKNNPTSEGSDLQLTKSEDSLESNCKSTSIVKERRGCYKRRKVSQTWEKESDRPVEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQQIQEEPPLYKTTYYGHHTCRILQSPEIIEDSPCDQSSMFLSFDNSFPTPAKKDCPFLSVKKEECKEEVVHPPPPSNDYLSGLTFDDPEKDVTLSSTLDSHDHLGVNIPDIMYDDVLNWPLS*