Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039432.01.T01 | XP_003623634.1 | 89.189 | 296 | 20 | 2 | 1 | 286 | 1 | 294 | 0 | 545 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039432.01.T01 | Q9LY00 | 41.758 | 182 | 81 | 5 | 16 | 184 | 10 | 179 | 4.12E-36 | 134 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039432.01.T01 | G7KY64 | 89.189 | 296 | 20 | 2 | 1 | 286 | 1 | 294 | 0.0 | 545 |
Gene ID | Type | Classification |
---|---|---|
MsG0780039432.01.T01 | TF | WRKY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080049002.01 | MsG0780039432.01 | 0.820952 | 5.225689e-53 | 4.194720e-50 |
MsG0180000241.01 | MsG0780039432.01 | 0.815954 | 7.093045e-52 | 4.959946e-49 |
MsG0180000525.01 | MsG0780039432.01 | 0.832908 | 7.226571e-56 | 8.191135e-53 |
MsG0180000627.01 | MsG0780039432.01 | 0.825931 | 3.580705e-54 | 3.310119e-51 |
MsG0180000650.01 | MsG0780039432.01 | 0.808321 | 3.280093e-50 | 1.869819e-47 |
MsG0180000652.01 | MsG0780039432.01 | 0.802055 | 6.727940e-49 | 3.263675e-46 |
MsG0180001119.01 | MsG0780039432.01 | 0.806038 | 9.988841e-50 | 5.366640e-47 |
MsG0180004765.01 | MsG0780039432.01 | 0.835159 | 1.973097e-56 | 2.392681e-53 |
MsG0180004766.01 | MsG0780039432.01 | 0.834290 | 3.264480e-56 | 3.857101e-53 |
MsG0180005279.01 | MsG0780039432.01 | 0.837866 | 4.035656e-57 | 5.312016e-54 |
MsG0180005639.01 | MsG0780039432.01 | 0.824307 | 8.663974e-54 | 7.644873e-51 |
MsG0280010916.01 | MsG0780039432.01 | 0.806770 | 7.001590e-50 | 3.832639e-47 |
MsG0280011163.01 | MsG0780039432.01 | 0.807637 | 4.586193e-50 | 2.567639e-47 |
MsG0280011272.01 | MsG0780039432.01 | -0.801870 | 7.342321e-49 | 3.545118e-46 |
MsG0680032272.01 | MsG0780039432.01 | 0.803488 | 3.403513e-49 | 1.712567e-46 |
MsG0680034782.01 | MsG0780039432.01 | 0.817016 | 4.103250e-52 | 2.954014e-49 |
MsG0680035445.01 | MsG0780039432.01 | 0.833584 | 4.904947e-56 | 5.673226e-53 |
MsG0680035580.01 | MsG0780039432.01 | 0.818579 | 1.820759e-52 | 1.368200e-49 |
MsG0480019065.01 | MsG0780039432.01 | 0.806125 | 9.573551e-50 | 5.155057e-47 |
MsG0480020887.01 | MsG0780039432.01 | 0.832607 | 8.585639e-56 | 9.644673e-53 |
MsG0480020935.01 | MsG0780039432.01 | -0.800042 | 1.734762e-48 | 7.996697e-46 |
MsG0480021398.01 | MsG0780039432.01 | 0.813704 | 2.236398e-51 | 1.471087e-48 |
MsG0480021763.01 | MsG0780039432.01 | 0.832215 | 1.073525e-55 | 1.191921e-52 |
MsG0480022426.01 | MsG0780039432.01 | 0.835420 | 1.695815e-56 | 2.072650e-53 |
MsG0480022446.01 | MsG0780039432.01 | 0.818655 | 1.749920e-52 | 1.317676e-49 |
MsG0480022572.01 | MsG0780039432.01 | 0.830678 | 2.565425e-55 | 2.722087e-52 |
MsG0480022579.01 | MsG0780039432.01 | 0.850735 | 1.401551e-60 | 2.772168e-57 |
MsG0480023251.01 | MsG0780039432.01 | 0.819507 | 1.119881e-52 | 8.634695e-50 |
MsG0480023905.01 | MsG0780039432.01 | 0.803927 | 2.759470e-49 | 1.404336e-46 |
MsG0480023906.01 | MsG0780039432.01 | 0.806060 | 9.883041e-50 | 5.312871e-47 |
MsG0580025407.01 | MsG0780039432.01 | -0.806363 | 8.532022e-50 | 4.621973e-47 |
MsG0580025612.01 | MsG0780039432.01 | 0.800402 | 1.465882e-48 | 6.819378e-46 |
MsG0580025739.01 | MsG0780039432.01 | 0.802968 | 4.360080e-49 | 2.164787e-46 |
MsG0580025832.01 | MsG0780039432.01 | 0.807829 | 4.174016e-50 | 2.348621e-47 |
MsG0580025843.01 | MsG0780039432.01 | 0.819020 | 1.445948e-52 | 1.099994e-49 |
MsG0380015735.01 | MsG0780039432.01 | 0.806429 | 8.259965e-50 | 4.482334e-47 |
MsG0380015891.01 | MsG0780039432.01 | 0.817803 | 2.727846e-52 | 2.006645e-49 |
MsG0380016666.01 | MsG0780039432.01 | 0.847820 | 9.077907e-60 | 1.633301e-56 |
MsG0380017437.01 | MsG0780039432.01 | -0.807016 | 6.208679e-50 | 3.420421e-47 |
MsG0480018253.01 | MsG0780039432.01 | 0.818884 | 1.552805e-52 | 1.176787e-49 |
MsG0580027411.01 | MsG0780039432.01 | 0.800534 | 1.377455e-48 | 6.429393e-46 |
MsG0580028140.01 | MsG0780039432.01 | 0.811424 | 7.048717e-51 | 4.361767e-48 |
MsG0580028428.01 | MsG0780039432.01 | 0.817974 | 2.496144e-52 | 1.844653e-49 |
MsG0580029880.01 | MsG0780039432.01 | 0.809852 | 1.541951e-50 | 9.152964e-48 |
MsG0580030000.01 | MsG0780039432.01 | 0.816595 | 5.100432e-52 | 3.629584e-49 |
MsG0680030599.01 | MsG0780039432.01 | 0.811540 | 6.654271e-51 | 4.130160e-48 |
MsG0280007877.01 | MsG0780039432.01 | 0.809042 | 2.300918e-50 | 1.336709e-47 |
MsG0280008152.01 | MsG0780039432.01 | 0.814931 | 1.197873e-51 | 8.144911e-49 |
MsG0280008165.01 | MsG0780039432.01 | 0.843211 | 1.611358e-58 | 2.502886e-55 |
MsG0280008171.01 | MsG0780039432.01 | 0.864525 | 1.142399e-64 | 3.597593e-61 |
MsG0280008172.01 | MsG0780039432.01 | 0.838533 | 2.717690e-57 | 3.650649e-54 |
MsG0680035707.01 | MsG0780039432.01 | 0.817132 | 3.864457e-52 | 2.790770e-49 |
MsG0780036509.01 | MsG0780039432.01 | 0.804533 | 2.063811e-49 | 1.066675e-46 |
MsG0780036593.01 | MsG0780039432.01 | 0.800572 | 1.353242e-48 | 6.322544e-46 |
MsG0780036595.01 | MsG0780039432.01 | 0.811810 | 5.810688e-51 | 3.632378e-48 |
MsG0780036596.01 | MsG0780039432.01 | 0.812736 | 3.649000e-51 | 2.338397e-48 |
MsG0780038377.01 | MsG0780039432.01 | 0.801408 | 9.133911e-49 | 4.358640e-46 |
MsG0780039432.01 | MsG0780039433.01 | 0.900151 | 9.753719e-78 | 1.244996e-73 |
MsG0780039432.01 | MsG0780039438.01 | 0.831756 | 1.393971e-55 | 1.527218e-52 |
MsG0780039432.01 | MsG0780039847.01 | 0.882856 | 7.331835e-71 | 4.539552e-67 |
MsG0780039432.01 | MsG0780041475.01 | 0.829574 | 4.769455e-55 | 4.900767e-52 |
MsG0780039432.01 | MsG0880041861.01 | 0.822236 | 2.639364e-53 | 2.196412e-50 |
MsG0780039432.01 | MsG0880041864.01 | 0.838851 | 2.249729e-57 | 3.051416e-54 |
MsG0780039432.01 | MsG0880042276.01 | 0.819529 | 1.107488e-52 | 8.544429e-50 |
MsG0780039432.01 | MsG0880042434.01 | 0.833782 | 4.376201e-56 | 5.092148e-53 |
MsG0780039432.01 | MsG0880042656.01 | 0.822254 | 2.613691e-53 | 2.176195e-50 |
MsG0780039432.01 | MsG0880043157.01 | 0.840161 | 1.026992e-57 | 1.450517e-54 |
MsG0780039432.01 | MsG0880045094.01 | 0.818634 | 1.769058e-52 | 1.331362e-49 |
MsG0780039432.01 | MsG0880045765.01 | 0.824399 | 8.243464e-54 | 7.293146e-51 |
MsG0780039432.01 | MsG0880045992.01 | 0.814973 | 1.172436e-51 | 7.981373e-49 |
MsG0780039432.01 | MsG0880046699.01 | 0.813269 | 2.788308e-51 | 1.812439e-48 |
MsG0780039432.01 | MsG0880047401.01 | 0.802728 | 4.889145e-49 | 2.412817e-46 |
MsG0780039432.01 | MsG0880047481.01 | -0.802599 | 5.196841e-49 | 2.556171e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039432.01.T01 | MTR_7g073380 | 89.189 | 296 | 20 | 2 | 1 | 286 | 1 | 294 | 0.0 | 545 |
MsG0780039432.01.T01 | MTR_7g073430 | 87.108 | 287 | 32 | 3 | 1 | 286 | 1 | 283 | 0.0 | 510 |
MsG0780039432.01.T01 | MTR_0002s1250 | 44.105 | 229 | 106 | 5 | 15 | 233 | 5 | 221 | 3.45e-61 | 195 |
MsG0780039432.01.T01 | MTR_8g032510 | 46.009 | 213 | 105 | 5 | 16 | 222 | 7 | 215 | 1.50e-56 | 184 |
MsG0780039432.01.T01 | MTR_8g005750 | 40.942 | 276 | 137 | 8 | 16 | 280 | 4 | 264 | 1.58e-56 | 183 |
MsG0780039432.01.T01 | MTR_2g075690 | 39.683 | 252 | 118 | 8 | 13 | 233 | 12 | 260 | 7.00e-49 | 164 |
MsG0780039432.01.T01 | MTR_2g075700 | 38.760 | 258 | 130 | 5 | 4 | 233 | 2 | 259 | 3.96e-45 | 155 |
MsG0780039432.01.T01 | MTR_2g075680 | 36.803 | 269 | 132 | 6 | 13 | 245 | 12 | 278 | 3.88e-43 | 149 |
MsG0780039432.01.T01 | MTR_5g067700 | 39.648 | 227 | 101 | 12 | 17 | 241 | 14 | 206 | 1.65e-38 | 135 |
MsG0780039432.01.T01 | MTR_3g093830 | 40.437 | 183 | 88 | 5 | 23 | 193 | 23 | 196 | 5.77e-38 | 136 |
MsG0780039432.01.T01 | MTR_2g075750 | 54.369 | 103 | 46 | 1 | 110 | 211 | 13 | 115 | 5.18e-35 | 125 |
MsG0780039432.01.T01 | MTR_2g075610 | 54.369 | 103 | 46 | 1 | 110 | 211 | 14 | 116 | 7.18e-34 | 122 |
MsG0780039432.01.T01 | MTR_7g117200 | 31.980 | 197 | 106 | 4 | 14 | 197 | 9 | 190 | 1.21e-26 | 106 |
MsG0780039432.01.T01 | MTR_3g090860 | 32.995 | 197 | 96 | 5 | 17 | 186 | 7 | 194 | 1.09e-25 | 104 |
MsG0780039432.01.T01 | MTR_8g027860 | 34.392 | 189 | 98 | 5 | 17 | 184 | 12 | 195 | 4.34e-23 | 97.4 |
MsG0780039432.01.T01 | MTR_8g099350 | 31.746 | 189 | 99 | 5 | 17 | 184 | 12 | 191 | 2.97e-21 | 92.4 |
MsG0780039432.01.T01 | MTR_5g067680 | 38.889 | 108 | 61 | 1 | 77 | 184 | 159 | 261 | 7.37e-18 | 82.8 |
MsG0780039432.01.T01 | MTR_7g028415 | 51.667 | 60 | 26 | 1 | 124 | 183 | 92 | 148 | 2.06e-14 | 70.1 |
MsG0780039432.01.T01 | MTR_7g028710 | 51.667 | 60 | 26 | 1 | 124 | 183 | 92 | 148 | 2.06e-14 | 70.1 |
MsG0780039432.01.T01 | MTR_5g073620 | 46.875 | 64 | 34 | 0 | 123 | 186 | 670 | 733 | 2.44e-14 | 73.6 |
MsG0780039432.01.T01 | MTR_8g092140 | 40.187 | 107 | 48 | 6 | 100 | 205 | 142 | 233 | 3.25e-13 | 68.2 |
MsG0780039432.01.T01 | MTR_8g096730 | 35.088 | 114 | 68 | 3 | 78 | 191 | 26 | 133 | 4.56e-13 | 65.9 |
MsG0780039432.01.T01 | MTR_3g095080 | 41.176 | 85 | 37 | 3 | 100 | 183 | 151 | 223 | 2.56e-12 | 65.5 |
MsG0780039432.01.T01 | MTR_7g079010 | 43.077 | 65 | 34 | 1 | 118 | 182 | 134 | 195 | 4.25e-12 | 64.7 |
MsG0780039432.01.T01 | MTR_3g095080 | 41.176 | 85 | 37 | 3 | 100 | 183 | 127 | 199 | 4.99e-12 | 64.3 |
MsG0780039432.01.T01 | MTR_1g086790 | 46.667 | 60 | 29 | 1 | 124 | 183 | 157 | 213 | 5.10e-12 | 65.5 |
MsG0780039432.01.T01 | MTR_5g043880 | 47.458 | 59 | 28 | 1 | 124 | 182 | 123 | 178 | 6.05e-12 | 65.1 |
MsG0780039432.01.T01 | MTR_8g007270 | 33.813 | 139 | 62 | 6 | 75 | 207 | 113 | 227 | 6.59e-12 | 64.3 |
MsG0780039432.01.T01 | MTR_2g088000 | 34.579 | 107 | 67 | 2 | 100 | 206 | 325 | 428 | 7.59e-12 | 65.9 |
MsG0780039432.01.T01 | MTR_7g110720 | 34.483 | 116 | 73 | 2 | 68 | 182 | 158 | 271 | 1.23e-11 | 65.1 |
MsG0780039432.01.T01 | MTR_7g109800 | 46.667 | 60 | 29 | 1 | 124 | 183 | 144 | 200 | 1.54e-11 | 63.9 |
MsG0780039432.01.T01 | MTR_3g053330 | 36.364 | 99 | 60 | 2 | 108 | 206 | 235 | 330 | 2.63e-11 | 63.9 |
MsG0780039432.01.T01 | MTR_4g094588 | 47.458 | 59 | 28 | 1 | 124 | 182 | 177 | 232 | 4.31e-11 | 63.2 |
MsG0780039432.01.T01 | MTR_5g091390 | 45.763 | 59 | 29 | 1 | 124 | 182 | 156 | 211 | 4.64e-11 | 62.8 |
MsG0780039432.01.T01 | MTR_8g028565 | 39.744 | 78 | 43 | 2 | 108 | 183 | 136 | 211 | 6.37e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780039432.01.T01 | AT3G56400 | 41.758 | 182 | 81 | 5 | 16 | 184 | 10 | 179 | 4.20e-37 | 134 |
MsG0780039432.01.T01 | AT1G66550 | 34.016 | 244 | 133 | 10 | 16 | 252 | 8 | 230 | 3.80e-28 | 109 |
MsG0780039432.01.T01 | AT2G40750 | 37.500 | 200 | 92 | 8 | 16 | 184 | 14 | 211 | 8.92e-28 | 110 |
MsG0780039432.01.T01 | AT2G46400 | 34.783 | 184 | 90 | 5 | 17 | 191 | 8 | 170 | 8.87e-27 | 106 |
MsG0780039432.01.T01 | AT1G66550 | 33.197 | 244 | 130 | 10 | 16 | 252 | 8 | 225 | 1.45e-26 | 104 |
MsG0780039432.01.T01 | AT5G01900 | 35.263 | 190 | 95 | 5 | 11 | 189 | 2 | 174 | 2.32e-26 | 104 |
MsG0780039432.01.T01 | AT5G22570 | 31.915 | 235 | 129 | 9 | 16 | 234 | 9 | 228 | 5.59e-25 | 101 |
MsG0780039432.01.T01 | AT1G66560 | 35.465 | 172 | 95 | 5 | 17 | 187 | 9 | 165 | 1.68e-23 | 96.7 |
MsG0780039432.01.T01 | AT1G66600 | 34.659 | 176 | 93 | 6 | 16 | 187 | 8 | 165 | 4.91e-22 | 92.4 |
MsG0780039432.01.T01 | AT4G11070 | 30.928 | 194 | 110 | 4 | 14 | 184 | 8 | 200 | 1.37e-21 | 92.8 |
MsG0780039432.01.T01 | AT5G24110 | 33.129 | 163 | 103 | 3 | 26 | 184 | 12 | 172 | 1.30e-19 | 87.0 |
MsG0780039432.01.T01 | AT2G40740 | 29.756 | 205 | 116 | 6 | 18 | 197 | 44 | 245 | 1.54e-19 | 86.7 |
MsG0780039432.01.T01 | AT2G40740 | 29.756 | 205 | 116 | 6 | 18 | 197 | 53 | 254 | 1.67e-19 | 86.7 |
MsG0780039432.01.T01 | AT4G11070 | 32.787 | 183 | 89 | 5 | 14 | 184 | 8 | 168 | 5.35e-19 | 85.1 |
MsG0780039432.01.T01 | AT1G80590 | 30.000 | 200 | 101 | 5 | 15 | 212 | 7 | 169 | 9.25e-19 | 83.6 |
MsG0780039432.01.T01 | AT4G23810 | 45.882 | 85 | 38 | 1 | 108 | 184 | 133 | 217 | 1.48e-17 | 81.6 |
MsG0780039432.01.T01 | AT1G69310 | 36.585 | 123 | 71 | 4 | 72 | 190 | 90 | 209 | 1.07e-13 | 70.1 |
MsG0780039432.01.T01 | AT1G69310 | 36.585 | 123 | 71 | 4 | 72 | 190 | 90 | 209 | 1.07e-13 | 70.1 |
MsG0780039432.01.T01 | AT1G69310 | 36.585 | 123 | 71 | 4 | 72 | 190 | 90 | 209 | 1.07e-13 | 70.1 |
MsG0780039432.01.T01 | AT5G45260 | 52.632 | 57 | 27 | 0 | 126 | 182 | 1209 | 1265 | 2.38e-13 | 70.9 |
MsG0780039432.01.T01 | AT5G13080 | 41.667 | 84 | 45 | 2 | 124 | 207 | 66 | 145 | 1.30e-12 | 64.7 |
MsG0780039432.01.T01 | AT5G41570 | 40.964 | 83 | 44 | 2 | 100 | 182 | 75 | 152 | 1.50e-12 | 65.1 |
MsG0780039432.01.T01 | AT2G37260 | 45.833 | 72 | 35 | 2 | 119 | 190 | 344 | 411 | 2.22e-12 | 67.4 |
MsG0780039432.01.T01 | AT2G37260 | 45.833 | 72 | 35 | 2 | 119 | 190 | 264 | 331 | 3.01e-12 | 66.6 |
MsG0780039432.01.T01 | AT2G37260 | 45.833 | 72 | 35 | 2 | 119 | 190 | 262 | 329 | 3.01e-12 | 66.6 |
MsG0780039432.01.T01 | AT2G46130 | 45.763 | 59 | 29 | 1 | 124 | 182 | 29 | 84 | 4.74e-12 | 62.0 |
MsG0780039432.01.T01 | AT5G49520 | 41.791 | 67 | 36 | 1 | 124 | 190 | 220 | 283 | 4.78e-12 | 66.2 |
MsG0780039432.01.T01 | AT1G64000 | 43.077 | 65 | 34 | 1 | 118 | 182 | 107 | 168 | 6.10e-12 | 63.9 |
MsG0780039432.01.T01 | AT3G01970 | 38.202 | 89 | 44 | 2 | 124 | 212 | 64 | 141 | 9.39e-12 | 62.4 |
MsG0780039432.01.T01 | AT4G04450 | 33.929 | 112 | 71 | 2 | 96 | 206 | 168 | 277 | 2.18e-11 | 64.3 |
MsG0780039432.01.T01 | AT2G47260 | 46.667 | 60 | 29 | 1 | 124 | 183 | 173 | 229 | 2.38e-11 | 63.9 |
MsG0780039432.01.T01 | AT4G39410 | 38.542 | 96 | 44 | 4 | 95 | 190 | 201 | 281 | 2.77e-11 | 63.5 |
MsG0780039432.01.T01 | AT2G44745 | 41.667 | 84 | 42 | 3 | 100 | 182 | 122 | 199 | 3.23e-11 | 62.0 |
MsG0780039432.01.T01 | AT4G04450 | 33.929 | 112 | 71 | 2 | 96 | 206 | 262 | 371 | 3.24e-11 | 63.9 |
MsG0780039432.01.T01 | AT4G18170 | 36.538 | 104 | 54 | 4 | 82 | 182 | 132 | 226 | 3.59e-11 | 63.2 |
MsG0780039432.01.T01 | AT1G62300 | 44.595 | 74 | 38 | 2 | 110 | 182 | 296 | 367 | 6.31e-11 | 63.2 |
MsG0780039432.01.T01 | AT1G29860 | 44.444 | 63 | 32 | 1 | 124 | 186 | 135 | 194 | 6.35e-11 | 62.0 |
Find 57 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGATTCTCATGATCATTT+AGG | 0.206318 | 7:-64027094 | MsG0780039432.01.T01:CDS |
TTCAAGAAAGTGGCCAATTA+AGG | 0.251647 | 7:+64027038 | None:intergenic |
GGTGATATTGATAACATTAA+TGG | 0.251913 | 7:-64028833 | MsG0780039432.01.T01:CDS |
TGCTTTGCAGGAACTATTAC+AGG | 0.282092 | 7:-64027453 | MsG0780039432.01.T01:intron |
CAATATGATGTTGGCTCAAA+TGG | 0.300173 | 7:-64026889 | MsG0780039432.01.T01:three_prime_UTR |
CAAGAGTACTTCCATTGTTA+AGG | 0.344618 | 7:-64028666 | MsG0780039432.01.T01:CDS |
GGCTCAAATGGAACTGGACT+TGG | 0.346215 | 7:-64026877 | MsG0780039432.01.T01:three_prime_UTR |
CTTTACAAAACAACCTACTA+TGG | 0.350539 | 7:-64027361 | MsG0780039432.01.T01:CDS |
TGTATGATGATGTCCTTAAT+TGG | 0.353206 | 7:-64027051 | MsG0780039432.01.T01:CDS |
AAATATATACCTTGGGAAAT+CGG | 0.371761 | 7:+64027849 | None:intergenic |
ACATCATCATACATGATATC+AGG | 0.372411 | 7:+64027061 | None:intergenic |
TTTAAAAGATCTTCAGCAAC+TGG | 0.373083 | 7:+64028800 | None:intergenic |
GAGAATTAGAAAAGGTTGTA+AGG | 0.381427 | 7:+64028771 | None:intergenic |
CTCTAAAGAATCCTCAGATT+TGG | 0.392364 | 7:+64028697 | None:intergenic |
TCTAATTAATTTCAAGAAAG+TGG | 0.395509 | 7:+64027028 | None:intergenic |
AATCTTAGGAAGCTAGATAT+TGG | 0.396254 | 7:+64028982 | None:intergenic |
GGTCATCAATGGAGAAAGTA+TGG | 0.401550 | 7:-64027892 | MsG0780039432.01.T01:CDS |
GGAGAATCCTCTATGATCTC+AGG | 0.407384 | 7:+64027310 | None:intergenic |
CCTTCAAATGATTACCTCTC+TGG | 0.419974 | 7:-64027163 | MsG0780039432.01.T01:CDS |
GATGTTGGCTCAAATGGAAC+TGG | 0.431212 | 7:-64026883 | MsG0780039432.01.T01:three_prime_UTR |
AAAGGAGGAGTGCAAGGAAG+AGG | 0.462606 | 7:-64027203 | MsG0780039432.01.T01:CDS |
CCAGAGAGGTAATCATTTGA+AGG | 0.470477 | 7:+64027163 | None:intergenic |
TCAGAAAAGTTTCGCAAACA+TGG | 0.472351 | 7:-64027945 | MsG0780039432.01.T01:intron |
TAATCATTTGAAGGAGGAGG+AGG | 0.475507 | 7:+64027172 | None:intergenic |
GTGATTGATGAATTACTAAG+AGG | 0.485264 | 7:-64028899 | MsG0780039432.01.T01:CDS |
AGAAATATTCTGAATGAAAG+TGG | 0.485810 | 7:-64028854 | MsG0780039432.01.T01:CDS |
AGGTAATCATTTGAAGGAGG+AGG | 0.500051 | 7:+64027169 | None:intergenic |
CATGGTAGTGGTAGTGGTCG+TGG | 0.505554 | 7:-64028926 | MsG0780039432.01.T01:CDS |
ACAAGTGTGATGGCCATAGT+AGG | 0.510474 | 7:+64027348 | None:intergenic |
GAAAATATAGCTCATGGTAG+TGG | 0.513286 | 7:-64028938 | MsG0780039432.01.T01:CDS |
AAATCAGATCCCTCTGAAGT+TGG | 0.516714 | 7:+64028728 | None:intergenic |
CTGTGGAAGATGGTCATCAA+TGG | 0.520430 | 7:-64027903 | MsG0780039432.01.T01:CDS |
CAGAAAAGTTTCGCAAACAT+GGG | 0.520924 | 7:-64027944 | MsG0780039432.01.T01:CDS |
AGCTAAGGAACATGGAAGAC+TGG | 0.529377 | 7:+64027281 | None:intergenic |
GAACAAGAGAGAATTAGAAA+AGG | 0.530157 | 7:+64028763 | None:intergenic |
GTAGAGGCTGTTACAAAAGA+AGG | 0.531049 | 7:-64028640 | MsG0780039432.01.T01:intron |
ATAGCTCATGGTAGTGGTAG+TGG | 0.536599 | 7:-64028932 | MsG0780039432.01.T01:CDS |
GTTGTCAAAGCTAAGGAACA+TGG | 0.540400 | 7:+64027273 | None:intergenic |
TCTGATCGTCCTGTGGAAGA+TGG | 0.541946 | 7:-64027913 | MsG0780039432.01.T01:CDS |
GGAAAGAGTTGTCAAAGCTA+AGG | 0.561012 | 7:+64027266 | None:intergenic |
ACTATGTAACAATATGATGT+TGG | 0.562103 | 7:-64026898 | MsG0780039432.01.T01:three_prime_UTR |
TGCACTCACAAACATGATCA+AGG | 0.563442 | 7:-64027430 | MsG0780039432.01.T01:CDS |
GAGAATCCTCTATGATCTCA+GGG | 0.568526 | 7:+64027311 | None:intergenic |
GCAAGATTCTACAAGTGTGA+TGG | 0.576779 | 7:+64027338 | None:intergenic |
GCCTCTACGTTCCTTAACAA+TGG | 0.594370 | 7:+64028655 | None:intergenic |
ACAAGTGCAACAAATTCAAG+AGG | 0.601952 | 7:-64027392 | MsG0780039432.01.T01:CDS |
AGTTTCGCAAACATGGGAGA+AGG | 0.609671 | 7:-64027938 | MsG0780039432.01.T01:CDS |
CATTGATGACCATCTTCCAC+AGG | 0.609995 | 7:+64027904 | None:intergenic |
AACATGGAAGACTGGTCACA+AGG | 0.611016 | 7:+64027289 | None:intergenic |
TTTGCAACTCACCAAATCTG+AGG | 0.616026 | 7:-64028708 | MsG0780039432.01.T01:CDS |
GCAAAGCCCTGAGATCATAG+AGG | 0.632964 | 7:-64027317 | MsG0780039432.01.T01:CDS |
TGATTGATGAATTACTAAGA+GGG | 0.634644 | 7:-64028898 | MsG0780039432.01.T01:CDS |
TCTTACACACCGATTTCCCA+AGG | 0.636446 | 7:-64027858 | MsG0780039432.01.T01:intron |
GAGAGGTAATCATTTGAAGG+AGG | 0.645608 | 7:+64027166 | None:intergenic |
GAAGGAGTCTGATCGTCCTG+TGG | 0.654687 | 7:-64027920 | MsG0780039432.01.T01:CDS |
TCCATTGTTAAGGAACGTAG+AGG | 0.656442 | 7:-64028656 | MsG0780039432.01.T01:CDS |
CATCAAAAGTGAGTCCAGAG+AGG | 0.707648 | 7:+64027149 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTTTCATTTTTCATTTT+TGG | + | Chr7:64026948-64026967 | None:intergenic | 10.0% |
!! | AACAAAAAAAAATCATATGT+TGG | + | Chr7:64027444-64027463 | None:intergenic | 15.0% |
!! | ACAAAAAAAAATCATATGTT+GGG | + | Chr7:64027443-64027462 | None:intergenic | 15.0% |
!! | TGCTAATTAATACTTATTAT+TGG | - | Chr7:64027658-64027677 | MsG0780039432.01.T01:intron | 15.0% |
!! | TTAATTTCTTTACATCTTAA+AGG | - | Chr7:64028260-64028279 | MsG0780039432.01.T01:intron | 15.0% |
!!! | TCTTTTAGTTAATATGATTT+TGG | - | Chr7:64027833-64027852 | MsG0780039432.01.T01:intron | 15.0% |
!! | AAAAATGAAAATATAGCTCA+TGG | - | Chr7:64026954-64026973 | MsG0780039432.01.T01:three_prime_UTR | 20.0% |
!! | AATACTTTCCAAAGAAAAAA+AGG | + | Chr7:64027510-64027529 | None:intergenic | 20.0% |
!! | ACGAAATAAATAAAAATGAG+AGG | + | Chr7:64027790-64027809 | None:intergenic | 20.0% |
!! | ATGATGAACAATAATTGATA+GGG | + | Chr7:64027715-64027734 | None:intergenic | 20.0% |
!! | CGAAATAAATAAAAATGAGA+GGG | + | Chr7:64027789-64027808 | None:intergenic | 20.0% |
!! | GAAAAACCATATGTTAAAAT+AGG | + | Chr7:64027397-64027416 | None:intergenic | 20.0% |
!! | GACAATCTTAAAAGTAAAAT+GGG | + | Chr7:64028098-64028117 | None:intergenic | 20.0% |
!! | TATTAAGAAAGAAGAATTAG+AGG | + | Chr7:64028387-64028406 | None:intergenic | 20.0% |
!! | TCTAATTAATTTCAAGAAAG+TGG | + | Chr7:64028873-64028892 | None:intergenic | 20.0% |
!! | TGAAAAAGAATTGCATAATT+GGG | + | Chr7:64027936-64027955 | None:intergenic | 20.0% |
!! | TGACAATCTTAAAAGTAAAA+TGG | + | Chr7:64028099-64028118 | None:intergenic | 20.0% |
!! | TTCAAATAGTGAAATTTGAT+TGG | + | Chr7:64028128-64028147 | None:intergenic | 20.0% |
!! | TTTATTTGAAAGTTTAGATG+AGG | - | Chr7:64027594-64027613 | MsG0780039432.01.T01:intron | 20.0% |
!!! | ATTTTTGGTATTGAAATCTT+AGG | + | Chr7:64026933-64026952 | None:intergenic | 20.0% |
!!! | TAAAATGTTAAATGAGTTGA+AGG | - | Chr7:64028307-64028326 | MsG0780039432.01.T01:intron | 20.0% |
!!! | TCTCATTTTTATTTATTTCG+TGG | - | Chr7:64027789-64027808 | MsG0780039432.01.T01:intron | 20.0% |
! | AAAAAAACTCAAAACCAAGT+AGG | + | Chr7:64027893-64027912 | None:intergenic | 25.0% |
! | AAAAATAATCCAACTTCAGA+GGG | - | Chr7:64027161-64027180 | MsG0780039432.01.T01:CDS | 25.0% |
! | AAATATATACCTTGGGAAAT+CGG | + | Chr7:64028052-64028071 | None:intergenic | 25.0% |
! | ACTATGTAACAATATGATGT+TGG | - | Chr7:64029000-64029019 | MsG0780039432.01.T01:five_prime_UTR | 25.0% |
! | ACTCGTATAAATATATACCT+TGG | + | Chr7:64028060-64028079 | None:intergenic | 25.0% |
! | AGAAATATTCTGAATGAAAG+TGG | - | Chr7:64027044-64027063 | MsG0780039432.01.T01:CDS | 25.0% |
! | ATAGTGAAATTTGATTGGAT+TGG | + | Chr7:64028123-64028142 | None:intergenic | 25.0% |
! | CTCGTATAAATATATACCTT+GGG | + | Chr7:64028059-64028078 | None:intergenic | 25.0% |
! | CTGAAAAAGAATTGCATAAT+TGG | + | Chr7:64027937-64027956 | None:intergenic | 25.0% |
! | GATGATGAACAATAATTGAT+AGG | + | Chr7:64027716-64027735 | None:intergenic | 25.0% |
! | TGAATATTTATATGCTTTGC+AGG | - | Chr7:64028433-64028452 | MsG0780039432.01.T01:intron | 25.0% |
! | TGATTGATGAATTACTAAGA+GGG | - | Chr7:64027000-64027019 | MsG0780039432.01.T01:three_prime_UTR | 25.0% |
!! | GGTGATATTGATAACATTAA+TGG | - | Chr7:64027065-64027084 | MsG0780039432.01.T01:CDS | 25.0% |
!! | GTGTTTTTCCTTTTTTTCTT+TGG | - | Chr7:64027499-64027518 | MsG0780039432.01.T01:intron | 25.0% |
!! | TTTTTCATACACACTTTTCA+TGG | - | Chr7:64027411-64027430 | MsG0780039432.01.T01:CDS | 25.0% |
!!! | ACTTGGTTTTGAGTTTTTTT+TGG | - | Chr7:64027893-64027912 | MsG0780039432.01.T01:CDS | 25.0% |
!!! | AGTTGACCTATTTTAACATA+TGG | - | Chr7:64027388-64027407 | MsG0780039432.01.T01:CDS | 25.0% |
AATCTTAGGAAGCTAGATAT+TGG | + | Chr7:64026919-64026938 | None:intergenic | 30.0% | |
ACACGCAAAAACTTAAACAA+AGG | + | Chr7:64028926-64028945 | None:intergenic | 30.0% | |
ACATCATCATACATGATATC+AGG | + | Chr7:64028840-64028859 | None:intergenic | 30.0% | |
ATACTGCTCATATGTTGTAA+AGG | + | Chr7:64027688-64027707 | None:intergenic | 30.0% | |
CTTGATTCTCATGATCATTT+AGG | - | Chr7:64028804-64028823 | MsG0780039432.01.T01:CDS | 30.0% | |
CTTTACAAAACAACCTACTA+TGG | - | Chr7:64028537-64028556 | MsG0780039432.01.T01:intron | 30.0% | |
GAAAAATAATCCAACTTCAG+AGG | - | Chr7:64027160-64027179 | MsG0780039432.01.T01:CDS | 30.0% | |
GAACAAGAGAGAATTAGAAA+AGG | + | Chr7:64027138-64027157 | None:intergenic | 30.0% | |
GAGAATTAGAAAAGGTTGTA+AGG | + | Chr7:64027130-64027149 | None:intergenic | 30.0% | |
GTGATTGATGAATTACTAAG+AGG | - | Chr7:64026999-64027018 | MsG0780039432.01.T01:three_prime_UTR | 30.0% | |
TTACAACATATGAGCAGTAT+TGG | - | Chr7:64027688-64027707 | MsG0780039432.01.T01:intron | 30.0% | |
TTTAAAAGATCTTCAGCAAC+TGG | + | Chr7:64027101-64027120 | None:intergenic | 30.0% | |
! | AGTTGCTGAAGATCTTTTAA+AGG | - | Chr7:64027100-64027119 | MsG0780039432.01.T01:CDS | 30.0% |
! | TGTATGATGATGTCCTTAAT+TGG | - | Chr7:64028847-64028866 | MsG0780039432.01.T01:CDS | 30.0% |
!! | CTGAAGTTGGATTATTTTTC+AGG | + | Chr7:64027160-64027179 | None:intergenic | 30.0% |
!! | TAGTAGGTTGTTTTGTAAAG+AGG | + | Chr7:64028537-64028556 | None:intergenic | 30.0% |
ACAAGTGCAACAAATTCAAG+AGG | - | Chr7:64028506-64028525 | MsG0780039432.01.T01:intron | 35.0% | |
CAGAAAAGTTTCGCAAACAT+GGG | - | Chr7:64027954-64027973 | MsG0780039432.01.T01:intron | 35.0% | |
GAAAATATAGCTCATGGTAG+TGG | - | Chr7:64026960-64026979 | MsG0780039432.01.T01:three_prime_UTR | 35.0% | |
GATTGTTTCATAGTCCTACT+TGG | - | Chr7:64027876-64027895 | MsG0780039432.01.T01:CDS | 35.0% | |
TATTCACCACATGTGATGAA+AGG | - | Chr7:64027746-64027765 | MsG0780039432.01.T01:intron | 35.0% | |
TCAGAAAAGTTTCGCAAACA+TGG | - | Chr7:64027953-64027972 | MsG0780039432.01.T01:intron | 35.0% | |
TTCAAGAAAGTGGCCAATTA+AGG | + | Chr7:64028863-64028882 | None:intergenic | 35.0% | |
! | CTCTAAAGAATCCTCAGATT+TGG | + | Chr7:64027204-64027223 | None:intergenic | 35.0% |
! | TCCTTTTCTCTCAGTGAAAA+AGG | - | Chr7:64028677-64028696 | MsG0780039432.01.T01:CDS | 35.0% |
! | TTTTCTCTCAGTGAAAAAGG+AGG | - | Chr7:64028680-64028699 | MsG0780039432.01.T01:CDS | 35.0% |
!! | CAAGAGTACTTCCATTGTTA+AGG | - | Chr7:64027232-64027251 | MsG0780039432.01.T01:CDS | 35.0% |
!! | CAATATGATGTTGGCTCAAA+TGG | - | Chr7:64029009-64029028 | MsG0780039432.01.T01:five_prime_UTR | 35.0% |
!! | CACTTTTGATGATCCAGAAA+AGG | - | Chr7:64028761-64028780 | MsG0780039432.01.T01:CDS | 35.0% |
!! | TAGGTTGTTTTGTAAAGAGG+TGG | + | Chr7:64028534-64028553 | None:intergenic | 35.0% |
!! | TCCTTTTTCACTGAGAGAAA+AGG | + | Chr7:64028681-64028700 | None:intergenic | 35.0% |
!!! | CGGTGTGTAAGATCTTTTTT+TGG | + | Chr7:64028032-64028051 | None:intergenic | 35.0% |
!!! | GAGAAAAGGACAGTCTTTTT+TGG | + | Chr7:64028667-64028686 | None:intergenic | 35.0% |
AGGTAATCATTTGAAGGAGG+AGG | + | Chr7:64028732-64028751 | None:intergenic | 40.0% | |
CATAGTCCTTTCATCACATG+TGG | + | Chr7:64027755-64027774 | None:intergenic | 40.0% | |
CCAGAGAGGTAATCATTTGA+AGG | + | Chr7:64028738-64028757 | None:intergenic | 40.0% | |
CCTTCAAATGATTACCTCTC+TGG | - | Chr7:64028735-64028754 | MsG0780039432.01.T01:CDS | 40.0% | |
GAGAATCCTCTATGATCTCA+GGG | + | Chr7:64028590-64028609 | None:intergenic | 40.0% | |
GAGAGGTAATCATTTGAAGG+AGG | + | Chr7:64028735-64028754 | None:intergenic | 40.0% | |
GCAAGATTCTACAAGTGTGA+TGG | + | Chr7:64028563-64028582 | None:intergenic | 40.0% | |
GGAAAGAGTTGTCAAAGCTA+AGG | + | Chr7:64028635-64028654 | None:intergenic | 40.0% | |
GGTCATCAATGGAGAAAGTA+TGG | - | Chr7:64028006-64028025 | MsG0780039432.01.T01:intron | 40.0% | |
GTAGAGGCTGTTACAAAAGA+AGG | - | Chr7:64027258-64027277 | MsG0780039432.01.T01:CDS | 40.0% | |
GTTGTCAAAGCTAAGGAACA+TGG | + | Chr7:64028628-64028647 | None:intergenic | 40.0% | |
TAATCATTTGAAGGAGGAGG+AGG | + | Chr7:64028729-64028748 | None:intergenic | 40.0% | |
TCCATTGTTAAGGAACGTAG+AGG | - | Chr7:64027242-64027261 | MsG0780039432.01.T01:CDS | 40.0% | |
TGCACTCACAAACATGATCA+AGG | - | Chr7:64028468-64028487 | MsG0780039432.01.T01:intron | 40.0% | |
TGCTTTGCAGGAACTATTAC+AGG | - | Chr7:64028445-64028464 | MsG0780039432.01.T01:intron | 40.0% | |
TTTGCAACTCACCAAATCTG+AGG | - | Chr7:64027190-64027209 | MsG0780039432.01.T01:CDS | 40.0% | |
! | GATAGTGTGACATCCTTTTC+TGG | + | Chr7:64028777-64028796 | None:intergenic | 40.0% |
!! | AAATCAGATCCCTCTGAAGT+TGG | + | Chr7:64027173-64027192 | None:intergenic | 40.0% |
!!! | AAAGGACAGTCTTTTTTGGC+TGG | + | Chr7:64028663-64028682 | None:intergenic | 40.0% |
!!! | AGTCTTTTTTGGCTGGTGTT+GGG | + | Chr7:64028656-64028675 | None:intergenic | 40.0% |
ACAAGTGTGATGGCCATAGT+AGG | + | Chr7:64028553-64028572 | None:intergenic | 45.0% | |
AGCTAAGGAACATGGAAGAC+TGG | + | Chr7:64028620-64028639 | None:intergenic | 45.0% | |
AGTTTCGCAAACATGGGAGA+AGG | - | Chr7:64027960-64027979 | MsG0780039432.01.T01:intron | 45.0% | |
CATCAAAAGTGAGTCCAGAG+AGG | + | Chr7:64028752-64028771 | None:intergenic | 45.0% | |
CTGTGGAAGATGGTCATCAA+TGG | - | Chr7:64027995-64028014 | MsG0780039432.01.T01:intron | 45.0% | |
GCCTCTACGTTCCTTAACAA+TGG | + | Chr7:64027246-64027265 | None:intergenic | 45.0% | |
GGAGAATCCTCTATGATCTC+AGG | + | Chr7:64028591-64028610 | None:intergenic | 45.0% | |
! | AACATGGAAGACTGGTCACA+AGG | + | Chr7:64028612-64028631 | None:intergenic | 45.0% |
! | AGTGAAAAAGGAGGAGTGCA+AGG | - | Chr7:64028689-64028708 | MsG0780039432.01.T01:CDS | 45.0% |
! | CATTGATGACCATCTTCCAC+AGG | + | Chr7:64027997-64028016 | None:intergenic | 45.0% |
!! | ATAGCTCATGGTAGTGGTAG+TGG | - | Chr7:64026966-64026985 | MsG0780039432.01.T01:three_prime_UTR | 45.0% |
!! | GATGTTGGCTCAAATGGAAC+TGG | - | Chr7:64029015-64029034 | MsG0780039432.01.T01:five_prime_UTR | 45.0% |
!! | TCTTACACACCGATTTCCCA+AGG | - | Chr7:64028040-64028059 | MsG0780039432.01.T01:intron | 45.0% |
!!! | CAGTCTTTTTTGGCTGGTGT+TGG | + | Chr7:64028657-64028676 | None:intergenic | 45.0% |
GCAAAGCCCTGAGATCATAG+AGG | - | Chr7:64028581-64028600 | MsG0780039432.01.T01:intron | 50.0% | |
GGCTCAAATGGAACTGGACT+TGG | - | Chr7:64029021-64029040 | MsG0780039432.01.T01:five_prime_UTR | 50.0% | |
TCTGATCGTCCTGTGGAAGA+TGG | - | Chr7:64027985-64028004 | MsG0780039432.01.T01:intron | 50.0% | |
! | AAAGGAGGAGTGCAAGGAAG+AGG | - | Chr7:64028695-64028714 | MsG0780039432.01.T01:CDS | 50.0% |
GAAGGAGTCTGATCGTCCTG+TGG | - | Chr7:64027978-64027997 | MsG0780039432.01.T01:intron | 55.0% | |
!! | CATGGTAGTGGTAGTGGTCG+TGG | - | Chr7:64026972-64026991 | MsG0780039432.01.T01:three_prime_UTR | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 64026874 | 64029046 | 64026874 | ID=MsG0780039432.01;Name=MsG0780039432.01 |
Chr7 | mRNA | 64026874 | 64029046 | 64026874 | ID=MsG0780039432.01.T01;Parent=MsG0780039432.01;Name=MsG0780039432.01.T01;_AED=0.48;_eAED=0.48;_QI=77|1|1|1|1|1|3|165|286 |
Chr7 | exon | 64028641 | 64029046 | 64028641 | ID=MsG0780039432.01.T01:exon:15850;Parent=MsG0780039432.01.T01 |
Chr7 | exon | 64027859 | 64027963 | 64027859 | ID=MsG0780039432.01.T01:exon:15851;Parent=MsG0780039432.01.T01 |
Chr7 | exon | 64026874 | 64027465 | 64026874 | ID=MsG0780039432.01.T01:exon:15852;Parent=MsG0780039432.01.T01 |
Chr7 | five_prime_UTR | 64028970 | 64029046 | 64028970 | ID=MsG0780039432.01.T01:five_prime_utr;Parent=MsG0780039432.01.T01 |
Chr7 | CDS | 64028641 | 64028969 | 64028641 | ID=MsG0780039432.01.T01:cds;Parent=MsG0780039432.01.T01 |
Chr7 | CDS | 64027859 | 64027963 | 64027859 | ID=MsG0780039432.01.T01:cds;Parent=MsG0780039432.01.T01 |
Chr7 | CDS | 64027039 | 64027465 | 64027039 | ID=MsG0780039432.01.T01:cds;Parent=MsG0780039432.01.T01 |
Chr7 | three_prime_UTR | 64026874 | 64027038 | 64026874 | ID=MsG0780039432.01.T01:three_prime_utr;Parent=MsG0780039432.01.T01 |
Gene Sequence |
Protein sequence |