AlfalfaGEDB | MsG0880041862.01

M. sativa cultivar ZhongmuNo.1 / MsG0880041862.01

KEGG: -
GO: -
PFAM: PF03140

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041862.01.T01	XP_024627626.1	97.484	159	4	0	109	267	136	294	4.03E-110	330
MsG0880041862.01.T01	XP_024627626.1	64.151	106	38	0	4	109	163	268	5.01E-38	145

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041862.01.T01	P0C897	35.294	119	76	1	123	240	380	498	1.67E-14	76.3

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041862.01.T01	A0A072TKP8	97.484	159	4	0	109	267	300	458	2.72e-108	330

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048660.01	MsG0880041862.01	0.808695	2.728870e-50	1.570753e-47
MsG0180000652.01	MsG0880041862.01	0.814426	1.549771e-51	1.039580e-48
MsG0180006054.01	MsG0880041862.01	0.810019	1.419495e-50	8.463566e-48
MsG0780040681.01	MsG0880041862.01	0.813455	2.537807e-51	1.658158e-48
MsG0780041074.01	MsG0880041862.01	0.819301	1.247787e-52	9.564870e-50
MsG0780041468.01	MsG0880041862.01	0.825563	4.379383e-54	4.005868e-51
MsG0780041662.01	MsG0880041862.01	0.828044	1.118662e-54	1.099284e-51
MsG0880041861.01	MsG0880041862.01	0.888135	7.721455e-73	5.906603e-69
MsG0880041862.01	MsG0880041863.01	0.844820	5.967263e-59	9.750509e-56
MsG0880041862.01	MsG0880041864.01	0.903118	4.825940e-79	7.044136e-75
MsG0880041862.01	MsG0880043157.01	0.829623	4.640916e-55	4.775590e-52
MsG0880041862.01	MsG0880043937.01	0.842134	3.112027e-58	4.673592e-55
MsG0880041862.01	MsG0880043941.01	0.827941	1.184744e-54	1.160646e-51
MsG0880041862.01	MsG0880043942.01	0.803397	3.554410e-49	1.784317e-46
MsG0880041862.01	MsG0880044266.01	0.808274	3.357564e-50	1.911612e-47
MsG0880041862.01	MsG0880047758.01	0.809427	1.902131e-50	1.116509e-47
MsG0280010736.01	MsG0880041862.01	0.820734	5.865725e-53	4.679328e-50
MsG0280010916.01	MsG0880041862.01	0.804925	1.709299e-49	8.925349e-47
MsG0680030880.01	MsG0880041862.01	0.802186	6.323014e-49	3.077374e-46
MsG0680031108.01	MsG0880041862.01	0.829807	4.187569e-55	4.333000e-52
MsG0680034230.01	MsG0880041862.01	0.809224	2.103299e-50	1.227914e-47
MsG0680034721.01	MsG0880041862.01	0.803965	2.709885e-49	1.380381e-46
MsG0680034739.01	MsG0880041862.01	0.802116	6.535181e-49	3.175029e-46
MsG0680035580.01	MsG0880041862.01	0.804549	2.048419e-49	1.059152e-46
MsG0480018653.01	MsG0880041862.01	0.829181	5.942807e-55	6.036977e-52
MsG0480020765.01	MsG0880041862.01	0.821169	4.656763e-53	3.760357e-50
MsG0480020832.01	MsG0880041862.01	0.853745	1.950710e-61	4.258031e-58
MsG0480023251.01	MsG0880041862.01	0.845362	4.258374e-59	7.079128e-56
MsG0480023488.01	MsG0880041862.01	0.814876	1.232028e-51	8.364751e-49
MsG0480023489.01	MsG0880041862.01	0.827595	1.434684e-54	1.391217e-51
MsG0580024790.01	MsG0880041862.01	-0.826379	2.802151e-54	2.623664e-51
MsG0580025332.01	MsG0880041862.01	0.808002	3.835241e-50	2.167925e-47
MsG0580025407.01	MsG0880041862.01	-0.834816	2.408740e-56	2.890849e-53
MsG0580025612.01	MsG0880041862.01	0.814231	1.712095e-51	1.142348e-48
MsG0580025821.01	MsG0880041862.01	0.802113	6.543910e-49	3.179045e-46
MsG0580025987.01	MsG0880041862.01	0.832473	9.263971e-56	1.036545e-52
MsG0380015131.01	MsG0880041862.01	0.807779	4.278221e-50	2.404135e-47
MsG0380015706.01	MsG0880041862.01	0.805420	1.346616e-49	7.120920e-47
MsG0380015875.01	MsG0880041862.01	0.823950	1.050817e-53	9.180261e-51
MsG0380016163.01	MsG0880041862.01	0.811383	7.195326e-51	4.447429e-48
MsG0380016285.01	MsG0880041862.01	0.810984	8.781618e-51	5.371856e-48
MsG0380017202.01	MsG0880041862.01	0.803144	4.009674e-49	1.999772e-46
MsG0380017244.01	MsG0880041862.01	0.804344	2.259902e-49	1.162405e-46
MsG0380018075.01	MsG0880041862.01	0.807235	5.580681e-50	3.092044e-47
MsG0480018183.01	MsG0880041862.01	0.804252	2.361468e-49	1.211723e-46
MsG0480018253.01	MsG0880041862.01	0.813608	2.348945e-51	1.541061e-48
MsG0580026122.01	MsG0880041862.01	0.823236	1.544466e-53	1.322243e-50
MsG0580026131.01	MsG0880041862.01	0.813768	2.165419e-51	1.426781e-48
MsG0580028428.01	MsG0880041862.01	0.844357	7.947874e-59	1.279811e-55
MsG0680030599.01	MsG0880041862.01	0.800274	1.556381e-48	7.216783e-46
MsG0280006469.01	MsG0880041862.01	0.800250	1.573946e-48	7.293815e-46
MsG0280007955.01	MsG0880041862.01	0.817059	4.013734e-52	2.892878e-49
MsG0280008112.01	MsG0880041862.01	0.802215	6.234669e-49	3.036732e-46
MsG0280008165.01	MsG0880041862.01	0.814800	1.281246e-51	8.681416e-49
MsG0280008383.01	MsG0880041862.01	0.813409	2.597679e-51	1.695100e-48
MsG0280010148.01	MsG0880041862.01	0.817307	3.528383e-52	2.560300e-49
MsG0780036593.01	MsG0880041862.01	0.821443	4.026288e-53	3.276092e-50
MsG0780036596.01	MsG0880041862.01	0.830573	2.721870e-55	2.878909e-52
MsG0780036602.01	MsG0880041862.01	0.809956	1.464490e-50	8.717272e-48
MsG0780039139.01	MsG0880041862.01	0.810825	9.508222e-51	5.791095e-48
MsG0780039934.01	MsG0880041862.01	0.800401	1.466633e-48	6.822640e-46
MsG0780039976.01	MsG0880041862.01	0.853746	1.949430e-61	4.255344e-58

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041862.01.T01	MTR_8g005265	97.484	159	4	0	109	267	300	458	6.91e-112	330
MsG0880041862.01.T01	MTR_8g005265	64.151	106	38	0	4	109	327	432	2.58e-40	145
MsG0880041862.01.T01	MTR_8g005225	75.000	156	39	0	109	264	304	459	3.78e-82	254
MsG0880041862.01.T01	MTR_8g005225	62.264	106	40	0	4	109	331	436	1.06e-37	138
MsG0880041862.01.T01	MTR_4g112660	72.956	159	13	2	109	267	235	363	2.82e-70	221
MsG0880041862.01.T01	MTR_4g112660	51.923	104	37	1	6	109	247	337	7.66e-26	104
MsG0880041862.01.T01	MTR_8g005285	94.444	108	6	0	4	111	369	476	5.99e-68	218
MsG0880041862.01.T01	MTR_8g005285	56.962	158	65	1	109	263	339	496	5.21e-57	190
MsG0880041862.01.T01	MTR_8g005235	60.645	155	61	0	109	263	288	442	8.08e-67	214
MsG0880041862.01.T01	MTR_8g005235	62.264	106	40	0	4	109	315	420	7.91e-42	149
MsG0880041862.01.T01	MTR_8g005325	63.871	155	56	0	109	263	318	472	1.98e-66	214
MsG0880041862.01.T01	MTR_8g005325	64.151	106	38	0	4	109	345	450	4.62e-42	150
MsG0880041862.01.T01	MTR_8g005295	90.741	108	10	0	4	111	383	490	4.96e-64	209
MsG0880041862.01.T01	MTR_8g005295	60.127	158	60	1	109	263	353	510	4.57e-62	203
MsG0880041862.01.T01	MTR_8g006525	45.161	186	86	4	78	258	252	426	2.16e-47	163
MsG0880041862.01.T01	MTR_8g006525	58.511	94	39	0	4	97	312	405	1.41e-30	118
MsG0880041862.01.T01	MTR_0209s0060	51.333	150	58	3	109	258	291	425	6.58e-45	156
MsG0880041862.01.T01	MTR_0209s0060	55.556	108	44	1	4	111	315	418	2.19e-33	126
MsG0880041862.01.T01	MTR_0209s0030	51.333	150	58	3	109	258	291	425	6.58e-45	156
MsG0880041862.01.T01	MTR_0209s0030	55.556	108	44	1	4	111	315	418	2.19e-33	126
MsG0880041862.01.T01	MTR_7g011980	35.256	156	99	1	100	253	178	333	9.02e-29	112
MsG0880041862.01.T01	MTR_7g011980	40.741	108	62	2	4	109	214	321	2.33e-18	83.6
MsG0880041862.01.T01	MTR_6g010920	35.065	154	97	2	100	250	244	397	4.22e-26	105
MsG0880041862.01.T01	MTR_6g010920	36.364	110	67	2	4	110	280	389	1.48e-15	76.3
MsG0880041862.01.T01	MTR_6g011050	35.333	150	95	1	100	247	245	394	7.56e-26	105
MsG0880041862.01.T01	MTR_6g011050	35.780	109	68	1	4	110	281	389	1.17e-15	76.6
MsG0880041862.01.T01	MTR_6g009610	36.000	150	94	1	100	247	247	396	2.86e-25	103
MsG0880041862.01.T01	MTR_6g009610	36.697	109	67	1	4	110	283	391	9.88e-15	73.9
MsG0880041862.01.T01	MTR_0024s0080	36.000	150	94	1	100	247	242	391	3.36e-25	103
MsG0880041862.01.T01	MTR_0024s0080	39.450	109	64	1	4	110	278	386	3.24e-17	80.9
MsG0880041862.01.T01	MTR_6g009580	34.899	149	95	1	100	246	71	219	3.84e-25	100
MsG0880041862.01.T01	MTR_6g009580	35.849	106	66	1	6	109	109	214	2.13e-13	68.2
MsG0880041862.01.T01	MTR_6g011060	34.810	158	101	1	100	255	255	412	8.08e-25	102
MsG0880041862.01.T01	MTR_6g011060	39.450	109	64	1	4	110	291	399	2.47e-15	75.5
MsG0880041862.01.T01	MTR_6g009590	35.333	150	95	1	100	247	247	396	8.38e-25	102
MsG0880041862.01.T01	MTR_6g009590	35.455	110	69	1	3	110	282	391	1.00e-14	73.9
MsG0880041862.01.T01	MTR_2g035640	31.788	151	101	1	107	255	192	342	3.21e-23	97.4
MsG0880041862.01.T01	MTR_2g035640	33.600	125	75	3	4	120	221	345	3.95e-15	74.7
MsG0880041862.01.T01	MTR_6g010850	33.136	169	109	2	100	266	185	351	6.25e-23	97.1
MsG0880041862.01.T01	MTR_6g010850	37.037	108	66	1	4	109	221	328	3.44e-15	75.1
MsG0880041862.01.T01	MTR_6g009170	33.548	155	95	3	100	246	251	405	1.44e-22	96.3
MsG0880041862.01.T01	MTR_6g009170	36.607	112	65	2	4	109	289	400	9.36e-14	70.9
MsG0880041862.01.T01	MTR_6g010810	32.500	160	105	2	100	256	243	402	1.46e-22	96.3
MsG0880041862.01.T01	MTR_6g010810	36.697	109	67	1	4	110	280	388	7.89e-16	77.0
MsG0880041862.01.T01	MTR_6g010890	32.317	164	103	3	100	255	256	419	4.75e-22	94.7
MsG0880041862.01.T01	MTR_6g010890	36.842	114	64	3	4	109	292	405	1.01e-13	70.9
MsG0880041862.01.T01	MTR_3g107590	32.886	149	98	1	100	246	257	405	2.67e-21	92.8
MsG0880041862.01.T01	MTR_3g107590	37.615	109	66	1	4	110	293	401	1.56e-14	73.2
MsG0880041862.01.T01	MTR_3g079390	34.722	144	92	1	115	256	301	444	5.69e-21	92.0
MsG0880041862.01.T01	MTR_3g079390	37.963	108	65	1	4	109	322	429	4.43e-14	72.0
MsG0880041862.01.T01	MTR_5g016570	42.308	130	73	2	115	242	378	507	7.49e-20	89.0
MsG0880041862.01.T01	MTR_5g016570	38.835	103	61	1	6	106	401	503	1.68e-11	64.3
MsG0880041862.01.T01	MTR_6g009600	33.858	127	82	1	77	201	8	134	3.26e-19	82.4
MsG0880041862.01.T01	MTR_6g009600	39.189	74	45	0	6	79	71	144	2.60e-12	63.5
MsG0880041862.01.T01	MTR_7g060840	29.189	185	122	4	82	260	247	428	1.33e-17	82.4
MsG0880041862.01.T01	MTR_5g087580	29.630	162	113	1	107	267	59	220	1.02e-16	77.4
MsG0880041862.01.T01	MTR_5g086340	34.532	139	88	2	116	253	286	422	1.28e-16	79.3
MsG0880041862.01.T01	MTR_5g086260	32.192	146	97	2	121	264	166	311	8.10e-16	76.3
MsG0880041862.01.T01	MTR_7g059520	34.188	117	76	1	119	234	37	153	1.19e-15	73.2
MsG0880041862.01.T01	MTR_7g059520	34.694	98	63	1	6	102	56	153	6.36e-12	63.2
MsG0880041862.01.T01	MTR_0182s0060	34.266	143	89	3	119	260	374	512	9.74e-15	73.9
MsG0880041862.01.T01	MTR_7g059540	27.976	168	119	2	86	251	299	466	1.19e-14	73.6
MsG0880041862.01.T01	MTR_7g059540	27.976	168	119	2	86	251	290	457	1.19e-14	73.6
MsG0880041862.01.T01	MTR_7g060310	30.769	143	95	2	119	260	344	483	1.66e-14	73.2
MsG0880041862.01.T01	MTR_7g060310	38.235	102	62	1	6	106	363	464	1.21e-12	67.8
MsG0880041862.01.T01	MTR_7g060260	32.231	121	81	1	119	238	283	403	1.70e-14	73.2
MsG0880041862.01.T01	MTR_7g060260	38.235	102	62	1	6	106	302	403	1.90e-13	70.1
MsG0880041862.01.T01	MTR_8g042830	29.730	148	92	2	116	253	258	403	2.56e-14	72.4
MsG0880041862.01.T01	MTR_8g042170	31.544	149	84	4	115	247	297	443	2.58e-14	72.8
MsG0880041862.01.T01	MTR_7g059525	30.496	141	96	2	113	251	134	274	3.25e-14	71.2
MsG0880041862.01.T01	MTR_7g059525	37.143	105	65	1	3	106	156	260	7.97e-13	67.4
MsG0880041862.01.T01	MTR_7g060320	32.231	121	81	1	119	238	321	441	1.15e-13	70.9
MsG0880041862.01.T01	MTR_7g060020	31.250	144	86	3	119	261	293	424	1.38e-13	70.5
MsG0880041862.01.T01	MTR_8g042400	29.870	154	87	5	115	249	184	335	4.51e-13	68.6
MsG0880041862.01.T01	MTR_7g446270	31.452	124	84	1	119	241	341	464	5.52e-13	68.9
MsG0880041862.01.T01	MTR_7g060080	28.000	175	119	3	84	251	8	182	7.09e-13	66.2
MsG0880041862.01.T01	MTR_7g060080	36.275	102	64	1	6	106	67	168	1.61e-11	62.4
MsG0880041862.01.T01	MTR_8g042070	30.263	152	87	6	104	238	91	240	1.41e-12	66.2
MsG0880041862.01.T01	MTR_7g059480	27.083	144	104	1	113	255	624	767	3.09e-12	66.6
MsG0880041862.01.T01	MTR_7g059480	38.235	102	62	1	6	106	649	750	3.62e-12	66.6
MsG0880041862.01.T01	MTR_8g037923	25.103	243	148	10	47	260	229	466	7.31e-12	65.5
MsG0880041862.01.T01	MTR_7g060160	30.556	144	87	3	119	261	265	396	1.10e-11	64.7
MsG0880041862.01.T01	MTR_7g017620	29.286	140	97	2	114	252	392	530	1.17e-11	64.7
MsG0880041862.01.T01	MTR_8g037920	28.736	174	102	7	104	260	237	405	1.60e-11	64.3
MsG0880041862.01.T01	MTR_7g060220	30.675	163	106	3	84	240	254	415	1.90e-11	63.9
MsG0880041862.01.T01	MTR_2g036310	29.630	135	92	2	120	252	15	148	2.26e-11	61.2
MsG0880041862.01.T01	MTR_7g060330	27.273	143	92	3	100	241	336	467	2.66e-11	63.9
MsG0880041862.01.T01	MTR_2g036320	30.147	136	90	3	120	252	321	454	4.46e-11	63.2
MsG0880041862.01.T01	MTR_7g059810	34.146	123	79	2	119	240	302	423	5.23e-11	62.8
MsG0880041862.01.T01	MTR_7g059510	28.472	144	91	2	119	261	282	414	5.74e-11	62.8
MsG0880041862.01.T01	MTR_7g060115	28.472	144	90	3	119	261	313	444	6.53e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041862.01.T01	AT2G28580	36.429	140	89	0	116	255	302	441	4.08e-28	112
MsG0880041862.01.T01	AT2G28580	40.741	108	64	0	4	111	322	429	5.78e-22	95.1
MsG0880041862.01.T01	AT2G28580	36.429	140	89	0	116	255	353	492	8.37e-28	112
MsG0880041862.01.T01	AT2G28580	40.741	108	64	0	4	111	373	480	5.58e-22	95.1
MsG0880041862.01.T01	AT2G28580	36.429	140	89	0	116	255	367	506	8.69e-28	112
MsG0880041862.01.T01	AT2G28580	40.741	108	64	0	4	111	387	494	4.96e-22	95.5
MsG0880041862.01.T01	AT2G28580	36.429	140	89	0	116	255	370	509	8.74e-28	112
MsG0880041862.01.T01	AT2G28580	40.741	108	64	0	4	111	390	497	5.99e-22	95.1
MsG0880041862.01.T01	AT2G28580	36.429	140	89	0	116	255	384	523	9.61e-28	112
MsG0880041862.01.T01	AT2G28580	40.741	108	64	0	4	111	404	511	5.83e-22	95.5
MsG0880041862.01.T01	AT2G44930	36.879	141	89	0	116	256	350	490	5.42e-25	103
MsG0880041862.01.T01	AT2G44930	44.444	108	60	0	4	111	370	477	2.96e-23	99.0
MsG0880041862.01.T01	AT3G50150	30.939	181	108	3	88	265	340	506	5.16e-21	92.4
MsG0880041862.01.T01	AT3G50150	38.835	103	61	2	6	106	376	478	2.27e-13	70.1
MsG0880041862.01.T01	AT3G50120	36.170	141	88	2	115	253	375	515	2.82e-20	90.5
MsG0880041862.01.T01	AT3G50160	33.766	154	99	2	115	265	345	498	2.86e-20	90.1
MsG0880041862.01.T01	AT3G50160	35.922	103	64	1	6	106	368	470	5.53e-11	62.8
MsG0880041862.01.T01	AT1G67150	30.935	139	95	1	116	253	213	351	4.10e-20	89.0
MsG0880041862.01.T01	AT1G67150	35.780	109	69	1	4	111	233	341	2.54e-13	69.3
MsG0880041862.01.T01	AT1G67150	30.935	139	95	1	116	253	256	394	5.12e-20	89.0
MsG0880041862.01.T01	AT1G67150	35.780	109	69	1	4	111	276	384	2.57e-13	69.7
MsG0880041862.01.T01	AT1G67150	30.935	139	95	1	116	253	256	394	5.12e-20	89.0
MsG0880041862.01.T01	AT1G67150	35.780	109	69	1	4	111	276	384	2.57e-13	69.7
MsG0880041862.01.T01	AT1G67150	30.935	139	95	1	116	253	260	398	5.51e-20	89.0
MsG0880041862.01.T01	AT1G67150	35.780	109	69	1	4	111	280	388	2.72e-13	69.7
MsG0880041862.01.T01	AT4G31980	33.333	144	94	2	100	242	516	658	2.79e-19	87.8
MsG0880041862.01.T01	AT3G50170	34.752	141	90	1	115	253	383	523	5.87e-18	83.6
MsG0880041862.01.T01	AT3G50170	37.864	103	62	1	6	106	406	508	8.53e-12	65.5
MsG0880041862.01.T01	AT5G11290	29.730	148	103	1	109	256	199	345	9.84e-18	82.0
MsG0880041862.01.T01	AT3G60470	34.307	137	89	1	121	256	393	529	1.18e-17	82.8
MsG0880041862.01.T01	AT3G60470	40.541	111	63	2	3	111	407	516	4.57e-17	80.9
MsG0880041862.01.T01	AT5G11290	29.299	157	110	1	100	256	259	414	1.69e-17	82.0
MsG0880041862.01.T01	AT2G36430	34.127	126	81	2	115	238	294	419	8.32e-17	80.1
MsG0880041862.01.T01	AT3G50140	31.915	141	94	2	115	253	383	523	4.69e-16	78.2
MsG0880041862.01.T01	AT3G50130	35.714	126	79	2	115	238	408	533	6.86e-16	77.4
MsG0880041862.01.T01	AT3G02645	35.294	119	76	1	123	240	380	498	1.71e-15	76.3
MsG0880041862.01.T01	AT3G50180	31.724	145	93	3	115	253	428	572	7.82e-15	74.3
MsG0880041862.01.T01	AT1G65985	34.167	120	76	2	121	238	307	425	1.68e-13	70.5
MsG0880041862.01.T01	AT1G65985	39.423	104	62	1	4	106	322	425	5.24e-13	68.9
MsG0880041862.01.T01	AT1G65985	34.167	120	76	2	121	238	307	425	1.68e-13	70.5
MsG0880041862.01.T01	AT1G65985	39.423	104	62	1	4	106	322	425	5.24e-13	68.9
MsG0880041862.01.T01	AT2G28580	45.312	64	35	0	116	179	384	447	2.63e-12	66.6
MsG0880041862.01.T01	AT3G50190	31.034	145	93	3	115	253	334	477	2.87e-11	63.5

Find 45 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATAACCATTATCAGAATATT+TGG	0.141712	8:+387861	MsG0880041862.01.T01:CDS
CTTGATACTGACATTGTTCT+AGG	0.157660	8:-387640	None:intergenic
TAACTGGTGGAAACATTATA+TGG	0.234450	8:+388996	MsG0880041862.01.T01:CDS
GAATTGGCAACATTGGTTAA+TGG	0.296171	8:+388901	MsG0880041862.01.T01:CDS
CTGCATGACTTCCAAGTTCA+TGG	0.314386	8:-388879	None:intergenic
TGAATGAACATTACAATAAC+TGG	0.320007	8:+388980	MsG0880041862.01.T01:CDS
GAAACATAATTGCATATATA+AGG	0.329067	8:-387668	None:intergenic
GACATTGTTCGAACGCAATT+AGG	0.332788	8:-388753	None:intergenic
AAGCAACAGAATGTGTTCTT+AGG	0.348136	8:+388728	MsG0880041862.01.T01:CDS
GGTTCCAAATATTCTGATAA+TGG	0.351805	8:-387865	None:intergenic
TTGTTATGGAAAGATCATTA+AGG	0.389525	8:+388954	MsG0880041862.01.T01:CDS
GAAGTGGCAGTGCTTGTTAA+TGG	0.401978	8:+387779	MsG0880041862.01.T01:CDS
ACTTGGAAGTCATGCAGAAT+TGG	0.403752	8:+388885	MsG0880041862.01.T01:CDS
ACATGAAGATGTTGAGTTGT+TGG	0.443426	8:+388837	MsG0880041862.01.T01:CDS
AATCAACATCAACTTGTGTA+TGG	0.449318	8:-387709	None:intergenic
ACAAGTTGATGTTGATTTGT+TGG	0.455972	8:+387715	MsG0880041862.01.T01:CDS
AGAGTTAGTTCAACTGTTGT+TGG	0.459714	8:+389054	MsG0880041862.01.T01:CDS
TAAGAACACATTCTGTTGCT+TGG	0.460229	8:-388726	None:intergenic
GGAAGTGATTGTGCATGAAA+TGG	0.461128	8:+387745	MsG0880041862.01.T01:CDS
TAAGCTTATTAATAGTATCA+TGG	0.461800	8:-387838	None:intergenic
AACATTATATGGGAATGTTA+AGG	0.469604	8:+389007	MsG0880041862.01.T01:CDS
GTGGTGACATCAAATTGTTA+TGG	0.484272	8:+388940	MsG0880041862.01.T01:CDS
GAAATCATTAGCCATGAACT+TGG	0.500879	8:+388868	MsG0880041862.01.T01:CDS
CATAGTTGCATATGAAAGGT+TGG	0.506971	8:-388786	None:intergenic
TGTTGATTTGTTGGTGGAGA+AGG	0.512953	8:+387724	MsG0880041862.01.T01:CDS
AACTGGTGGAAACATTATAT+GGG	0.515685	8:+388997	MsG0880041862.01.T01:CDS
TTGATACTGACATTGTTCTA+GGG	0.522905	8:-387639	None:intergenic
GAAGTGATTGTGCATGAAAT+GGG	0.523677	8:+387746	MsG0880041862.01.T01:CDS
CTTGGTCTACATTCAAATGC+GGG	0.526420	8:-388708	None:intergenic
TCATGCAGAATTGGCAACAT+TGG	0.537428	8:+388894	MsG0880041862.01.T01:CDS
CACCAACCACAATGCAGCCA+TGG	0.546124	8:-387891	None:intergenic
GAAACATAGTTGCATATGAA+AGG	0.547120	8:-388790	None:intergenic
GATTCGACAAATTTAAAACA+TGG	0.566903	8:-388673	None:intergenic
ACCACAATGCAGCCATGGTA+CGG	0.571593	8:-387886	None:intergenic
AGTTGATGTTGATTTGTTGG+TGG	0.572996	8:+387718	MsG0880041862.01.T01:CDS
TGGTCTTTGTAAACATGTTG+TGG	0.582048	8:+387799	MsG0880041862.01.T01:CDS
ACAGTTGAACTAACTCTCCA+AGG	0.590172	8:-389048	None:intergenic
GACATTGTTCTAGGGCAATG+AGG	0.593451	8:-387631	None:intergenic
ATGAACATTACAATAACTGG+TGG	0.610484	8:+388983	MsG0880041862.01.T01:CDS
TACCATGGCTGCATTGTGGT+TGG	0.611964	8:+387889	MsG0880041862.01.T01:CDS
GCTTGGTCTACATTCAAATG+CGG	0.614751	8:-388709	None:intergenic
TGGTCTTTGCAAATATGTTG+TGG	0.629307	8:+388921	MsG0880041862.01.T01:CDS
AATGGGAAGTGATAAAGAAG+TGG	0.638138	8:+387763	MsG0880041862.01.T01:CDS
GAATATTTGGAACCGTACCA+TGG	0.643141	8:+387874	MsG0880041862.01.T01:CDS
ACCGTACCATGGCTGCATTG+TGG	0.722473	8:+387885	MsG0880041862.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTTATTATTTATATAAATT+TGG	-	Chr8:388386-388405	None:intergenic	0.0%
!!	TTTATTATTTATATAAATTT+GGG	-	Chr8:388385-388404	None:intergenic	0.0%
!!!	AAATATTGTTTTTAAAGTAA+CGG	+	Chr8:388614-388633	MsG0880041862.01.T01:intron	10.0%
!!	ACTTAAAAATGTATAATCCA+TGG	+	Chr8:388023-388042	MsG0880041862.01.T01:intron	20.0%
!!	ATAACCATTATCAGAATATT+TGG	+	Chr8:387861-387880	MsG0880041862.01.T01:CDS	20.0%
!!	GAAACATAATTGCATATATA+AGG	-	Chr8:387671-387690	None:intergenic	20.0%
!!	TAAGCTTATTAATAGTATCA+TGG	-	Chr8:387841-387860	None:intergenic	20.0%
!!	TGTACAAATTAAGGAATAAA+TGG	+	Chr8:388145-388164	MsG0880041862.01.T01:intron	20.0%
!!!	CTAATATAAATGTTGTTTGA+GGG	-	Chr8:388518-388537	None:intergenic	20.0%
!!!	TCTAATATAAATGTTGTTTG+AGG	-	Chr8:388519-388538	None:intergenic	20.0%
!!!	TTTATAGTTTTTGTTGTTGT+TGG	+	Chr8:388096-388115	MsG0880041862.01.T01:intron	20.0%
!	AACAATGTTATGATGTTGAA+GGG	+	Chr8:388235-388254	MsG0880041862.01.T01:intron	25.0%
!	AACATTATATGGGAATGTTA+AGG	+	Chr8:389007-389026	MsG0880041862.01.T01:CDS	25.0%
!	GTAATGTAAGTATTAAACTC+TGG	+	Chr8:388184-388203	MsG0880041862.01.T01:intron	25.0%
!	TATGATAATAATGCAAACCA+TGG	-	Chr8:388043-388062	None:intergenic	25.0%
!	TGAATGAACATTACAATAAC+TGG	+	Chr8:388980-388999	MsG0880041862.01.T01:CDS	25.0%
!	TGTTTACTCTGTACAAATTA+AGG	+	Chr8:388136-388155	MsG0880041862.01.T01:intron	25.0%
!	TTGTTATGGAAAGATCATTA+AGG	+	Chr8:388954-388973	MsG0880041862.01.T01:CDS	25.0%
!!	GATTCGACAAATTTAAAACA+TGG	-	Chr8:388676-388695	None:intergenic	25.0%
!!	GATTTTTCTTTTCTTCTCAT+GGG	-	Chr8:388470-388489	None:intergenic	25.0%
!!	GTCAATTTTCTTAGAGTTAT+TGG	+	Chr8:389102-389121	MsG0880041862.01.T01:CDS	25.0%
!!	TGATTTTTCTTTTCTTCTCA+TGG	-	Chr8:388471-388490	None:intergenic	25.0%
!!!	AATATTTTAAGCTAATGCAG+TGG	-	Chr8:388587-388606	None:intergenic	25.0%
!!!	CATTTTTGTTTAATGACACA+TGG	+	Chr8:388407-388426	MsG0880041862.01.T01:intron	25.0%
!!!	TAAGGTTTTAAATTGAGTTG+CGG	+	Chr8:388301-388320	MsG0880041862.01.T01:intron	25.0%
	AACTGGTGGAAACATTATAT+GGG	+	Chr8:388997-389016	MsG0880041862.01.T01:CDS	30.0%
	AAGATTATGTAATGAACGTG+AGG	+	Chr8:388274-388293	MsG0880041862.01.T01:intron	30.0%
	AATCAACATCAACTTGTGTA+TGG	-	Chr8:387712-387731	None:intergenic	30.0%
	AATGACACATGGAATTATGA+GGG	+	Chr8:388418-388437	MsG0880041862.01.T01:intron	30.0%
	AGATTATGTAATGAACGTGA+GGG	+	Chr8:388275-388294	MsG0880041862.01.T01:intron	30.0%
	ATGAACATTACAATAACTGG+TGG	+	Chr8:388983-389002	MsG0880041862.01.T01:CDS	30.0%
	CATTGTTCGTAATATTGTAG+TGG	-	Chr8:388222-388241	None:intergenic	30.0%
	GAAACATAGTTGCATATGAA+AGG	-	Chr8:388793-388812	None:intergenic	30.0%
	GAACAATGTTATGATGTTGA+AGG	+	Chr8:388234-388253	MsG0880041862.01.T01:intron	30.0%
	GGTTCCAAATATTCTGATAA+TGG	-	Chr8:387868-387887	None:intergenic	30.0%
	TAACTGGTGGAAACATTATA+TGG	+	Chr8:388996-389015	MsG0880041862.01.T01:CDS	30.0%
	TAATGACACATGGAATTATG+AGG	+	Chr8:388417-388436	MsG0880041862.01.T01:intron	30.0%
	TTGATACTGACATTGTTCTA+GGG	-	Chr8:387642-387661	None:intergenic	30.0%
!!	ACAAGTTGATGTTGATTTGT+TGG	+	Chr8:387715-387734	MsG0880041862.01.T01:CDS	30.0%
	AAGCAACAGAATGTGTTCTT+AGG	+	Chr8:388728-388747	MsG0880041862.01.T01:CDS	35.0%
	AATGGGAAGTGATAAAGAAG+TGG	+	Chr8:387763-387782	MsG0880041862.01.T01:CDS	35.0%
	AATTTGAATCAGAACGCAAG+CGG	+	Chr8:388336-388355	MsG0880041862.01.T01:intron	35.0%
	AGAGTTAGTTCAACTGTTGT+TGG	+	Chr8:389054-389073	MsG0880041862.01.T01:CDS	35.0%
	ATGACACATGGAATTATGAG+GGG	+	Chr8:388419-388438	MsG0880041862.01.T01:intron	35.0%
	CACAAAAACCAGCTCAAAAT+CGG	-	Chr8:388640-388659	None:intergenic	35.0%
	CATAGTTGCATATGAAAGGT+TGG	-	Chr8:388789-388808	None:intergenic	35.0%
	CTTGATACTGACATTGTTCT+AGG	-	Chr8:387643-387662	None:intergenic	35.0%
	GAAATCATTAGCCATGAACT+TGG	+	Chr8:388868-388887	MsG0880041862.01.T01:CDS	35.0%
	GAAGTGATTGTGCATGAAAT+GGG	+	Chr8:387746-387765	MsG0880041862.01.T01:CDS	35.0%
	GATTATGTAATGAACGTGAG+GGG	+	Chr8:388276-388295	MsG0880041862.01.T01:intron	35.0%
	GTGGTGACATCAAATTGTTA+TGG	+	Chr8:388940-388959	MsG0880041862.01.T01:CDS	35.0%
	TAAGAACACATTCTGTTGCT+TGG	-	Chr8:388729-388748	None:intergenic	35.0%
	TATAAATTTGGGAATGCCCT+CGG	-	Chr8:388374-388393	None:intergenic	35.0%
	TGGTCTTTGCAAATATGTTG+TGG	+	Chr8:388921-388940	MsG0880041862.01.T01:CDS	35.0%
	TGGTCTTTGTAAACATGTTG+TGG	+	Chr8:387799-387818	MsG0880041862.01.T01:CDS	35.0%
!	ACATGAAGATGTTGAGTTGT+TGG	+	Chr8:388837-388856	MsG0880041862.01.T01:CDS	35.0%
!	GAATTGGCAACATTGGTTAA+TGG	+	Chr8:388901-388920	MsG0880041862.01.T01:CDS	35.0%
!!	AGTTGATGTTGATTTGTTGG+TGG	+	Chr8:387718-387737	MsG0880041862.01.T01:CDS	35.0%
!!	TGGTGTATTTTAGAGATGCT+TGG	+	Chr8:387909-387928	MsG0880041862.01.T01:CDS	35.0%
	ACAGTTGAACTAACTCTCCA+AGG	-	Chr8:389051-389070	None:intergenic	40.0%
	ACTTGGAAGTCATGCAGAAT+TGG	+	Chr8:388885-388904	MsG0880041862.01.T01:CDS	40.0%
	CTTGGTCTACATTCAAATGC+GGG	-	Chr8:388711-388730	None:intergenic	40.0%
	GACATTGTTCGAACGCAATT+AGG	-	Chr8:388756-388775	None:intergenic	40.0%
	GCTTGGTCTACATTCAAATG+CGG	-	Chr8:388712-388731	None:intergenic	40.0%
	GGAAGTGATTGTGCATGAAA+TGG	+	Chr8:387745-387764	MsG0880041862.01.T01:CDS	40.0%
	TAATGAACGTGAGGGGTTTA+AGG	+	Chr8:388283-388302	MsG0880041862.01.T01:intron	40.0%
	TCATGCAGAATTGGCAACAT+TGG	+	Chr8:388894-388913	MsG0880041862.01.T01:CDS	40.0%
!	ATGTTGTTTGAGGGAGTTCT+TGG	-	Chr8:388509-388528	None:intergenic	40.0%
!	CAGTGTATTTTCGTGATCCT+TGG	+	Chr8:389031-389050	MsG0880041862.01.T01:CDS	40.0%
!	GAATATTTGGAACCGTACCA+TGG	+	Chr8:387874-387893	MsG0880041862.01.T01:CDS	40.0%
!!	AGAGCTAGTTCTACTTTGGT+TGG	+	Chr8:387932-387951	MsG0880041862.01.T01:intron	40.0%
!!	TGTTGATTTGTTGGTGGAGA+AGG	+	Chr8:387724-387743	MsG0880041862.01.T01:CDS	40.0%
!!	TTGGAGAGCTAGTTCTACTT+TGG	+	Chr8:387928-387947	MsG0880041862.01.T01:intron	40.0%
!!!	TTGAGCTGGTTTTTGTGCTT+AGG	+	Chr8:388643-388662	MsG0880041862.01.T01:intron	40.0%
	CTGCATGACTTCCAAGTTCA+TGG	-	Chr8:388882-388901	None:intergenic	45.0%
	GCTAGAGTACAGAAGTAACG+GGG	+	Chr8:388441-388460	MsG0880041862.01.T01:intron	45.0%
	GGCTAGAGTACAGAAGTAAC+GGG	+	Chr8:388440-388459	MsG0880041862.01.T01:intron	45.0%
	GGGCTAGAGTACAGAAGTAA+CGG	+	Chr8:388439-388458	MsG0880041862.01.T01:intron	45.0%
!	GAAGTGGCAGTGCTTGTTAA+TGG	+	Chr8:387779-387798	MsG0880041862.01.T01:CDS	45.0%
!!	GACATTGTTCTAGGGCAATG+AGG	-	Chr8:387634-387653	None:intergenic	45.0%
	ACCACAATGCAGCCATGGTA+CGG	-	Chr8:387889-387908	None:intergenic	50.0%
	TACCATGGCTGCATTGTGGT+TGG	+	Chr8:387889-387908	MsG0880041862.01.T01:CDS	50.0%
!!	AGTAACGGCCGATTTTGAGC+TGG	+	Chr8:388629-388648	MsG0880041862.01.T01:intron	50.0%
	ACCGTACCATGGCTGCATTG+TGG	+	Chr8:387885-387904	MsG0880041862.01.T01:CDS	55.0%
	AGCGGATCATTCTTGCTCCG+AGG	+	Chr8:388354-388373	MsG0880041862.01.T01:intron	55.0%
	CACCAACCACAATGCAGCCA+TGG	-	Chr8:387894-387913	None:intergenic	55.0%
	GCGGATCATTCTTGCTCCGA+GGG	+	Chr8:388355-388374	MsG0880041862.01.T01:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	387614	389143	387614	ID=MsG0880041862.01;Name=MsG0880041862.01
Chr8	mRNA	387614	389143	387614	ID=MsG0880041862.01.T01;Parent=MsG0880041862.01;Name=MsG0880041862.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|267
Chr8	exon	387614	387938	387614	ID=MsG0880041862.01.T01:exon:243;Parent=MsG0880041862.01.T01
Chr8	exon	388665	389143	388665	ID=MsG0880041862.01.T01:exon:242;Parent=MsG0880041862.01.T01
Chr8	CDS	387614	387938	387614	ID=MsG0880041862.01.T01:cds;Parent=MsG0880041862.01.T01
Chr8	CDS	388665	389143	388665	ID=MsG0880041862.01.T01:cds;Parent=MsG0880041862.01.T01

Gene Sequence

>MsG0880041862.01.T01

ATGAAAAATTTAAGGAACCTCATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATCCATACACAAGTTGATGTTGATTTGTTGGTGGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGGCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACCATGATACTATTAATAAGCTTAATAACCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTGTGTACCATGTTTTAAATTTGTCGAATCTAAGTTACGAATCCCGCATTTGAATGTAGACCAAGCAACAGAATGTGTTCTTAGGAACCTAATTGCGTTCGAACAATGTCACTATTCAGACCAACCTTTCATATGCAACTATGTTTCTTTAATTGATTCTTTGATTCATACACATGAAGATGTTGAGTTGTTGGTTGACACAGAAATCATTAGCCATGAACTTGGAAGTCATGCAGAATTGGCAACATTGGTTAATGGTCTTTGCAAATATGTTGTGGTGACATCAAATTGTTATGGAAAGATCATTAAGGAAATGAATGAACATTACAATAACTGGTGGAAACATTATATGGGAATGTTAAGGTCAGTGTATTTTCGTGATCCTTGGAGAGTTAGTTCAACTGTTGTTGGAATTGCTATTTTCTTATTTGCTGCTGTCAATTTTCTTAGAGTTATTGGTGTATTTCGTTTGAAGTAG

Protein sequence

>MsG0880041862.01.T01

MKNLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVAVLVNGLCKHVVVNSTCYHDTINKLNNHYQNIWNRTMAALWLVYFRDAWRASCVPCFKFVESKLRIPHLNVDQATECVLRNLIAFEQCHYSDQPFICNYVSLIDSLIHTHEDVELLVDTEIISHELGSHAELATLVNGLCKYVVVTSNCYGKIIKEMNEHYNNWWKHYMGMLRSVYFRDPWRVSSTVVGIAIFLFAAVNFLRVIGVFRLK*