Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042203.01.T01 | XP_003626931.1 | 96.188 | 341 | 13 | 0 | 2 | 342 | 30 | 370 | 0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0880042203.01 | 0.802382 | 5.760104e-49 | 2.817751e-46 |
| MsG0080049148.01 | MsG0880042203.01 | 0.829019 | 6.506062e-55 | 6.576736e-52 |
| MsG0180000065.01 | MsG0880042203.01 | 0.816890 | 4.378235e-52 | 3.140982e-49 |
| MsG0180000470.01 | MsG0880042203.01 | 0.803787 | 2.950131e-49 | 1.495911e-46 |
| MsG0180000828.01 | MsG0880042203.01 | 0.833748 | 4.463114e-56 | 5.187517e-53 |
| MsG0180001141.01 | MsG0880042203.01 | 0.801629 | 8.228043e-49 | 3.948274e-46 |
| MsG0180001153.01 | MsG0880042203.01 | 0.801180 | 1.016713e-48 | 4.824019e-46 |
| MsG0180003097.01 | MsG0880042203.01 | 0.828433 | 9.015574e-55 | 8.960040e-52 |
| MsG0180003188.01 | MsG0880042203.01 | 0.834034 | 3.783930e-56 | 4.436407e-53 |
| MsG0180004264.01 | MsG0880042203.01 | 0.814785 | 1.290660e-51 | 8.741591e-49 |
| MsG0180004388.01 | MsG0880042203.01 | 0.803274 | 3.770249e-49 | 1.886627e-46 |
| MsG0180004463.01 | MsG0880042203.01 | 0.814656 | 1.378357e-51 | 9.303256e-49 |
| MsG0180004675.01 | MsG0880042203.01 | 0.807216 | 5.632051e-50 | 3.118965e-47 |
| MsG0180005233.01 | MsG0880042203.01 | 0.805828 | 1.105696e-49 | 5.908690e-47 |
| MsG0180005664.01 | MsG0880042203.01 | 0.804754 | 1.855530e-49 | 9.646199e-47 |
| MsG0180005763.01 | MsG0880042203.01 | 0.828625 | 8.104275e-55 | 8.099194e-52 |
| MsG0180006092.01 | MsG0880042203.01 | 0.808138 | 3.588007e-50 | 2.035450e-47 |
| MsG0280006406.01 | MsG0880042203.01 | 0.811887 | 5.590292e-51 | 3.501614e-48 |
| MsG0780040596.01 | MsG0880042203.01 | 0.803273 | 3.770870e-49 | 1.886925e-46 |
| MsG0780040726.01 | MsG0880042203.01 | 0.816842 | 4.488229e-52 | 3.215752e-49 |
| MsG0880042203.01 | MsG0880042232.01 | 0.825682 | 4.102597e-54 | 3.765614e-51 |
| MsG0880042203.01 | MsG0880042294.01 | 0.830567 | 2.730265e-55 | 2.887345e-52 |
| MsG0880042203.01 | MsG0880042314.01 | 0.836228 | 1.058432e-56 | 1.325663e-53 |
| MsG0880042203.01 | MsG0880042404.01 | 0.823699 | 1.203316e-53 | 1.043949e-50 |
| MsG0880042203.01 | MsG0880042611.01 | 0.803167 | 3.967637e-49 | 1.979997e-46 |
| MsG0880042203.01 | MsG0880043491.01 | 0.815136 | 1.078905e-51 | 7.376752e-49 |
| MsG0880042203.01 | MsG0880044574.01 | 0.816850 | 4.470149e-52 | 3.203463e-49 |
| MsG0880042203.01 | MsG0880044996.01 | 0.800031 | 1.744121e-48 | 8.037493e-46 |
| MsG0880042203.01 | MsG0880046012.01 | 0.801450 | 8.955177e-49 | 4.277937e-46 |
| MsG0880042203.01 | MsG0880046114.01 | 0.826959 | 2.037507e-54 | 1.939727e-51 |
| MsG0880042203.01 | MsG0880047120.01 | 0.806619 | 7.535037e-50 | 4.108561e-47 |
| MsG0880042203.01 | MsG0880047608.01 | 0.807678 | 4.494199e-50 | 2.518861e-47 |
| MsG0380013549.01 | MsG0880042203.01 | 0.801286 | 9.671870e-49 | 4.601336e-46 |
| MsG0680031114.01 | MsG0880042203.01 | 0.803648 | 3.153243e-49 | 1.593122e-46 |
| MsG0680031243.01 | MsG0880042203.01 | 0.800022 | 1.751378e-48 | 8.069108e-46 |
| MsG0680034433.01 | MsG0880042203.01 | 0.801064 | 1.074047e-48 | 5.081324e-46 |
| MsG0480018637.01 | MsG0880042203.01 | 0.802083 | 6.639126e-49 | 3.222883e-46 |
| MsG0480019373.01 | MsG0880042203.01 | 0.801407 | 9.136829e-49 | 4.359956e-46 |
| MsG0480020874.01 | MsG0880042203.01 | 0.809927 | 1.485483e-50 | 8.835267e-48 |
| MsG0480021164.01 | MsG0880042203.01 | 0.823580 | 1.283367e-53 | 1.109460e-50 |
| MsG0480021853.01 | MsG0880042203.01 | 0.816355 | 5.771280e-52 | 4.080301e-49 |
| MsG0480022252.01 | MsG0880042203.01 | 0.803742 | 3.015080e-49 | 1.527039e-46 |
| MsG0480022533.01 | MsG0880042203.01 | 0.837363 | 5.431433e-57 | 7.038711e-54 |
| MsG0480023159.01 | MsG0880042203.01 | 0.828736 | 7.618048e-55 | 7.637196e-52 |
| MsG0480023707.01 | MsG0880042203.01 | 0.814873 | 1.233969e-51 | 8.377190e-49 |
| MsG0480023814.01 | MsG0880042203.01 | 0.811236 | 7.746004e-51 | 4.769274e-48 |
| MsG0580024165.01 | MsG0880042203.01 | 0.804806 | 1.809992e-49 | 9.422061e-47 |
| MsG0380015779.01 | MsG0880042203.01 | 0.817836 | 2.682467e-52 | 1.974975e-49 |
| MsG0380015808.01 | MsG0880042203.01 | 0.801936 | 7.114761e-49 | 3.440843e-46 |
| MsG0380016432.01 | MsG0880042203.01 | 0.803289 | 3.742742e-49 | 1.873565e-46 |
| MsG0380017266.01 | MsG0880042203.01 | -0.828264 | 9.902681e-55 | 9.792537e-52 |
| MsG0380017506.01 | MsG0880042203.01 | 0.804433 | 2.164992e-49 | 1.116120e-46 |
| MsG0380017631.01 | MsG0880042203.01 | 0.804552 | 2.045292e-49 | 1.057638e-46 |
| MsG0380018009.01 | MsG0880042203.01 | 0.805606 | 1.230630e-49 | 6.538785e-47 |
| MsG0480018163.01 | MsG0880042203.01 | 0.814159 | 1.775335e-51 | 1.182242e-48 |
| MsG0580027401.01 | MsG0880042203.01 | 0.816138 | 6.453919e-52 | 4.535819e-49 |
| MsG0280006518.01 | MsG0880042203.01 | 0.802131 | 6.487881e-49 | 3.153338e-46 |
| MsG0280007164.01 | MsG0880042203.01 | 0.846140 | 2.618595e-59 | 4.463482e-56 |
| MsG0280010443.01 | MsG0880042203.01 | 0.806065 | 9.854845e-50 | 5.298464e-47 |
| MsG0680035692.01 | MsG0880042203.01 | 0.804334 | 2.270225e-49 | 1.167419e-46 |
| MsG0680035704.01 | MsG0880042203.01 | 0.808573 | 2.897916e-50 | 1.662794e-47 |
| MsG0780035948.01 | MsG0880042203.01 | 0.819377 | 1.198895e-52 | 9.209480e-50 |
| MsG0780036477.01 | MsG0880042203.01 | 0.810554 | 1.088008e-50 | 6.578629e-48 |
| MsG0780036720.01 | MsG0880042203.01 | 0.813465 | 2.525241e-51 | 1.650392e-48 |
| MsG0780036964.01 | MsG0880042203.01 | 0.806641 | 7.454064e-50 | 4.066664e-47 |
| MsG0780038391.01 | MsG0880042203.01 | 0.803566 | 3.279534e-49 | 1.653577e-46 |
| MsG0780038443.01 | MsG0880042203.01 | 0.832856 | 7.444321e-56 | 8.425027e-53 |
| MsG0780038495.01 | MsG0880042203.01 | 0.802270 | 6.075699e-49 | 2.963472e-46 |
| MsG0780040057.01 | MsG0880042203.01 | 0.806164 | 9.396552e-50 | 5.064836e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042203.01.T01 | MTR_8g012210 | 96.188 | 341 | 13 | 0 | 2 | 342 | 30 | 370 | 0.0 | 678 |
| MsG0880042203.01.T01 | MTR_2g437030 | 23.024 | 291 | 211 | 8 | 35 | 320 | 172 | 454 | 3.93e-13 | 70.5 |
| MsG0880042203.01.T01 | MTR_2g437260 | 20.130 | 308 | 233 | 9 | 35 | 335 | 80 | 381 | 1.49e-12 | 68.6 |
| MsG0880042203.01.T01 | MTR_4g084630 | 21.951 | 246 | 182 | 4 | 35 | 270 | 17 | 262 | 4.53e-12 | 66.6 |
| MsG0880042203.01.T01 | MTR_2g437020 | 21.242 | 306 | 228 | 7 | 6 | 305 | 57 | 355 | 4.54e-12 | 67.0 |
| MsG0880042203.01.T01 | MTR_2g436400 | 20.139 | 288 | 225 | 4 | 34 | 320 | 92 | 375 | 6.99e-12 | 66.2 |
| MsG0880042203.01.T01 | MTR_4g120380 | 21.359 | 309 | 224 | 9 | 19 | 319 | 72 | 369 | 7.49e-12 | 66.2 |
| MsG0880042203.01.T01 | MTR_2g437080 | 22.260 | 292 | 214 | 7 | 34 | 320 | 85 | 368 | 8.89e-12 | 65.9 |
| MsG0880042203.01.T01 | MTR_2g019810 | 23.052 | 308 | 169 | 11 | 30 | 323 | 107 | 360 | 1.35e-11 | 65.5 |
| MsG0880042203.01.T01 | MTR_2g437160 | 21.493 | 335 | 234 | 11 | 19 | 342 | 93 | 409 | 2.05e-11 | 65.1 |
| MsG0880042203.01.T01 | MTR_6g083110 | 56.364 | 55 | 20 | 1 | 244 | 298 | 1 | 51 | 2.39e-11 | 61.6 |
| MsG0880042203.01.T01 | MTR_2g436440 | 22.337 | 291 | 213 | 7 | 35 | 320 | 92 | 374 | 3.15e-11 | 64.3 |
| MsG0880042203.01.T01 | MTR_2g437960 | 21.812 | 298 | 219 | 9 | 35 | 325 | 99 | 389 | 3.47e-11 | 64.3 |
| MsG0880042203.01.T01 | MTR_2g437960 | 21.812 | 298 | 219 | 9 | 35 | 325 | 99 | 389 | 3.93e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042203.01.T01 | AT1G79220 | 48.936 | 329 | 159 | 4 | 21 | 342 | 73 | 399 | 7.87e-106 | 316 |
| MsG0880042203.01.T01 | AT1G61990 | 21.515 | 330 | 204 | 9 | 34 | 321 | 94 | 410 | 6.59e-12 | 66.6 |
| MsG0880042203.01.T01 | AT1G61990 | 21.515 | 330 | 204 | 9 | 34 | 321 | 94 | 410 | 6.59e-12 | 66.6 |
| MsG0880042203.01.T01 | AT5G64950 | 25.090 | 279 | 183 | 7 | 59 | 320 | 107 | 376 | 2.22e-11 | 65.1 |
| MsG0880042203.01.T01 | AT1G21150 | 21.667 | 240 | 181 | 4 | 35 | 269 | 63 | 300 | 2.59e-11 | 64.7 |
| MsG0880042203.01.T01 | AT1G21150 | 21.429 | 238 | 184 | 3 | 35 | 269 | 99 | 336 | 3.02e-11 | 64.3 |
| MsG0880042203.01.T01 | AT1G62010 | 20.544 | 331 | 217 | 9 | 29 | 319 | 75 | 399 | 4.96e-11 | 63.9 |
| MsG0880042203.01.T01 | AT1G21150 | 21.429 | 238 | 184 | 3 | 35 | 269 | 163 | 400 | 5.75e-11 | 63.9 |
Find 57 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCGCTTGCTTAGTGATT+TGG | 0.240350 | 8:-5319721 | MsG0880042203.01.T01:CDS |
| CTTCGCTTGCTTAGTGATTT+GGG | 0.268010 | 8:-5319720 | MsG0880042203.01.T01:CDS |
| ATTGACAATGTCAAAATATT+AGG | 0.269638 | 8:+5319240 | None:intergenic |
| GGAAATTGCTGATGAGTTAA+TGG | 0.297355 | 8:-5318980 | MsG0880042203.01.T01:CDS |
| TTGCTTAGTGATTTGGGTTT+AGG | 0.299185 | 8:-5319714 | MsG0880042203.01.T01:CDS |
| AAATATGTGGTGACATTAAT+AGG | 0.301744 | 8:-5319357 | MsG0880042203.01.T01:CDS |
| TAGCAGTTTCATCAAGGAAT+TGG | 0.311012 | 8:-5318924 | MsG0880042203.01.T01:CDS |
| CAAGCCTCTCGTCGAAATTA+TGG | 0.312035 | 8:+5319631 | None:intergenic |
| AGCAATGAAGGTACAGAATA+TGG | 0.327499 | 8:-5319091 | MsG0880042203.01.T01:CDS |
| TTGTAAAGATTATCAATTGC+AGG | 0.347721 | 8:-5319680 | MsG0880042203.01.T01:CDS |
| ATATTTGAAAACAACAGATA+TGG | 0.357754 | 8:+5319144 | None:intergenic |
| TTTGTACAATTTCGAATCCT+TGG | 0.360192 | 8:+5319377 | None:intergenic |
| TTTGACATTGTCAATTGATA+AGG | 0.373162 | 8:-5319232 | MsG0880042203.01.T01:CDS |
| TTCATTGCTAGAAGCACTCT+TGG | 0.407140 | 8:+5319105 | None:intergenic |
| TATGTCATTGTTTGAGTCAA+AGG | 0.408420 | 8:-5319601 | MsG0880042203.01.T01:CDS |
| CATCAGCAATTTCCTTATCA+TGG | 0.411377 | 8:+5318989 | None:intergenic |
| GTTGCACAGTATGAAGAGTT+AGG | 0.413445 | 8:-5319507 | MsG0880042203.01.T01:CDS |
| ATGGAATATATAAGTAGGAT+TGG | 0.421574 | 8:-5319405 | MsG0880042203.01.T01:CDS |
| GGGTTGCGGTGACGACGATT+TGG | 0.427364 | 8:-5319805 | MsG0880042203.01.T01:CDS |
| GCGCAATGCAGATCCTTCTC+AGG | 0.427960 | 8:-5319754 | MsG0880042203.01.T01:CDS |
| TGTGGAAACAATTCGCGAAA+AGG | 0.448608 | 8:-5319325 | MsG0880042203.01.T01:CDS |
| CCTCAATGCTCTAAGTATTG+AGG | 0.451275 | 8:+5319050 | None:intergenic |
| CTCAATGCTCTAAGTATTGA+GGG | 0.456627 | 8:+5319051 | None:intergenic |
| TTCCTTTGACGATGAGAAGA+TGG | 0.459653 | 8:-5319424 | MsG0880042203.01.T01:CDS |
| AATTCAACCTCATTCTGAGC+TGG | 0.463701 | 8:+5319879 | None:intergenic |
| AAGAGTTAGGTATACCGAAA+AGG | 0.464523 | 8:-5319494 | MsG0880042203.01.T01:CDS |
| GTCAAAGGAAATGCTTCATA+AGG | 0.473131 | 8:-5319586 | MsG0880042203.01.T01:CDS |
| AGCTGGGACTTTCGTCGAAT+AGG | 0.477720 | 8:+5319896 | None:intergenic |
| TGGAATATATAAGTAGGATT+GGG | 0.487565 | 8:-5319404 | MsG0880042203.01.T01:CDS |
| AGAGTTAGGTATACCGAAAA+GGG | 0.502937 | 8:-5319493 | MsG0880042203.01.T01:CDS |
| GTTTGTCAGATGCCATGATA+AGG | 0.508257 | 8:-5319001 | MsG0880042203.01.T01:CDS |
| AGGTATACCGAAAAGGGACT+TGG | 0.508376 | 8:-5319487 | MsG0880042203.01.T01:CDS |
| TATTTGAAAACAACAGATAT+GGG | 0.512551 | 8:+5319145 | None:intergenic |
| CATATAGAAGTAGTTCAGAA+AGG | 0.515005 | 8:+5318886 | None:intergenic |
| GGATCTGCATTGCGCAAAGA+CGG | 0.515146 | 8:+5319762 | None:intergenic |
| AAATGCTAAAGACAAATTCA+AGG | 0.522593 | 8:-5319853 | MsG0880042203.01.T01:CDS |
| GATCTGCATTGCGCAAAGAC+GGG | 0.526314 | 8:+5319763 | None:intergenic |
| AGAGATTAGCAGTTTCATCA+AGG | 0.527319 | 8:-5318930 | MsG0880042203.01.T01:CDS |
| AAGAGTGCTTCTAGCAATGA+AGG | 0.527541 | 8:-5319103 | MsG0880042203.01.T01:CDS |
| CAATGAAGGGTTTCTTGCAA+TGG | 0.534493 | 8:+5319563 | None:intergenic |
| ATATAGAAGTAGTTCAGAAA+GGG | 0.534546 | 8:+5318887 | None:intergenic |
| AGAAGATGGAATATATAAGT+AGG | 0.535407 | 8:-5319410 | MsG0880042203.01.T01:CDS |
| ATTCAACCTCATTCTGAGCT+GGG | 0.539471 | 8:+5319880 | None:intergenic |
| TTCGAAATTGTACAAATATG+TGG | 0.547821 | 8:-5319370 | MsG0880042203.01.T01:CDS |
| AAGTAGGATTGGGCTTTCCA+AGG | 0.560292 | 8:-5319394 | MsG0880042203.01.T01:CDS |
| TTCCATCTTCTCATCGTCAA+AGG | 0.562047 | 8:+5319422 | None:intergenic |
| TGTCAATTGATAAGGTTCAA+AGG | 0.565097 | 8:-5319224 | MsG0880042203.01.T01:CDS |
| TCAAGGAATTGGACTACTAG+AGG | 0.573509 | 8:-5318913 | MsG0880042203.01.T01:CDS |
| CATTGAGGATGTCCGAGGAG+AGG | 0.582695 | 8:-5319035 | MsG0880042203.01.T01:CDS |
| ACTTTCGTCGAATAGGTGGC+AGG | 0.582772 | 8:+5319903 | None:intergenic |
| ATTAATAGGCATCTCTCGTG+TGG | 0.591058 | 8:-5319343 | MsG0880042203.01.T01:CDS |
| CCTCAATACTTAGAGCATTG+AGG | 0.607754 | 8:-5319050 | MsG0880042203.01.T01:CDS |
| TGGGACTTTCGTCGAATAGG+TGG | 0.610226 | 8:+5319899 | None:intergenic |
| GAAAGTCCCAGCTCAGAATG+AGG | 0.610873 | 8:-5319886 | MsG0880042203.01.T01:CDS |
| TTAACCATAATTTCGACGAG+AGG | 0.625796 | 8:-5319635 | MsG0880042203.01.T01:CDS |
| GAAGTTCTTGAAATAACCGT+CGG | 0.665623 | 8:+5319444 | None:intergenic |
| TAGAGCATTGAGGATGTCCG+AGG | 0.681763 | 8:-5319040 | MsG0880042203.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAATGGAATTTTATAAA+AGG | - | Chr8:5319840-5319859 | MsG0880042203.01.T01:CDS | 15.0% |
| !! | ATATTTGAAAACAACAGATA+TGG | + | Chr8:5319665-5319684 | None:intergenic | 20.0% |
| !! | ATTGACAATGTCAAAATATT+AGG | + | Chr8:5319569-5319588 | None:intergenic | 20.0% |
| !! | TATTTGAAAACAACAGATAT+GGG | + | Chr8:5319664-5319683 | None:intergenic | 20.0% |
| !!! | ATATCTGTTGTTTTCAAATA+TGG | - | Chr8:5319664-5319683 | MsG0880042203.01.T01:CDS | 20.0% |
| !!! | ATTTTATAAAAGGACAAAAC+AGG | - | Chr8:5319850-5319869 | MsG0880042203.01.T01:CDS | 20.0% |
| !!! | TTTTACAAAGTATGGTTTTT+CGG | - | Chr8:5319511-5319530 | MsG0880042203.01.T01:CDS | 20.0% |
| ! | AAATATGTGGTGACATTAAT+AGG | - | Chr8:5319449-5319468 | MsG0880042203.01.T01:CDS | 25.0% |
| ! | AAATGCTAAAGACAAATTCA+AGG | - | Chr8:5318953-5318972 | MsG0880042203.01.T01:CDS | 25.0% |
| ! | AGAAGATGGAATATATAAGT+AGG | - | Chr8:5319396-5319415 | MsG0880042203.01.T01:CDS | 25.0% |
| ! | ATGGAATATATAAGTAGGAT+TGG | - | Chr8:5319401-5319420 | MsG0880042203.01.T01:CDS | 25.0% |
| ! | TGGAATATATAAGTAGGATT+GGG | - | Chr8:5319402-5319421 | MsG0880042203.01.T01:CDS | 25.0% |
| ! | TTCGAAATTGTACAAATATG+TGG | - | Chr8:5319436-5319455 | MsG0880042203.01.T01:CDS | 25.0% |
| ! | TTGTAAAGATTATCAATTGC+AGG | - | Chr8:5319126-5319145 | MsG0880042203.01.T01:CDS | 25.0% |
| ! | TTTGACATTGTCAATTGATA+AGG | - | Chr8:5319574-5319593 | MsG0880042203.01.T01:CDS | 25.0% |
| !! | ATGAAATATTCGGTCTTTTT+GGG | - | Chr8:5319537-5319556 | MsG0880042203.01.T01:CDS | 25.0% |
| !! | GTGTTGAATTTTACAAAGTA+TGG | - | Chr8:5319503-5319522 | MsG0880042203.01.T01:CDS | 25.0% |
| !! | TTTTCGGATGATGAAATATT+CGG | - | Chr8:5319527-5319546 | MsG0880042203.01.T01:CDS | 25.0% |
| !!! | TACTGAAGTTTTGAGTAAAT+GGG | - | Chr8:5318980-5318999 | MsG0880042203.01.T01:CDS | 25.0% |
| TATGTCATTGTTTGAGTCAA+AGG | - | Chr8:5319205-5319224 | MsG0880042203.01.T01:CDS | 30.0% | |
| TGTCAATTGATAAGGTTCAA+AGG | - | Chr8:5319582-5319601 | MsG0880042203.01.T01:CDS | 30.0% | |
| TTTGTACAATTTCGAATCCT+TGG | + | Chr8:5319432-5319451 | None:intergenic | 30.0% | |
| ! | AGGAACATGACTTTCATTTT+AGG | - | Chr8:5319602-5319621 | MsG0880042203.01.T01:CDS | 30.0% |
| ! | GATGAAATATTCGGTCTTTT+TGG | - | Chr8:5319536-5319555 | MsG0880042203.01.T01:CDS | 30.0% |
| ! | TATTTTCACACAGCAATGAA+GGG | + | Chr8:5319259-5319278 | None:intergenic | 30.0% |
| ! | TGGTTCAAATGATGATTTTG+CGG | - | Chr8:5319339-5319358 | MsG0880042203.01.T01:CDS | 30.0% |
| ! | TTATTTTCACACAGCAATGA+AGG | + | Chr8:5319260-5319279 | None:intergenic | 30.0% |
| !!! | ACTGAAGTTTTGAGTAAATG+GGG | - | Chr8:5318981-5319000 | MsG0880042203.01.T01:CDS | 30.0% |
| !!! | ATTGAGGGTGTTTTCATATT+AGG | + | Chr8:5319743-5319762 | None:intergenic | 30.0% |
| !!! | CTACTGAAGTTTTGAGTAAA+TGG | - | Chr8:5318979-5318998 | MsG0880042203.01.T01:CDS | 30.0% |
| AAGAGTTAGGTATACCGAAA+AGG | - | Chr8:5319312-5319331 | MsG0880042203.01.T01:CDS | 35.0% | |
| AGAGATTAGCAGTTTCATCA+AGG | - | Chr8:5319876-5319895 | MsG0880042203.01.T01:CDS | 35.0% | |
| AGAGTTAGGTATACCGAAAA+GGG | - | Chr8:5319313-5319332 | MsG0880042203.01.T01:CDS | 35.0% | |
| CATCAGCAATTTCCTTATCA+TGG | + | Chr8:5319820-5319839 | None:intergenic | 35.0% | |
| GAAGTTCTTGAAATAACCGT+CGG | + | Chr8:5319365-5319384 | None:intergenic | 35.0% | |
| GGAAATTGCTGATGAGTTAA+TGG | - | Chr8:5319826-5319845 | MsG0880042203.01.T01:CDS | 35.0% | |
| GTCAAAGGAAATGCTTCATA+AGG | - | Chr8:5319220-5319239 | MsG0880042203.01.T01:CDS | 35.0% | |
| TAGCAGTTTCATCAAGGAAT+TGG | - | Chr8:5319882-5319901 | MsG0880042203.01.T01:CDS | 35.0% | |
| TTAACCATAATTTCGACGAG+AGG | - | Chr8:5319171-5319190 | MsG0880042203.01.T01:CDS | 35.0% | |
| ! | AGCAATGAAGGTACAGAATA+TGG | - | Chr8:5319715-5319734 | MsG0880042203.01.T01:CDS | 35.0% |
| ! | ATTTGAACCAAGTCCCTTTT+CGG | + | Chr8:5319329-5319348 | None:intergenic | 35.0% |
| ! | TTGCTTAGTGATTTGGGTTT+AGG | - | Chr8:5319092-5319111 | MsG0880042203.01.T01:CDS | 35.0% |
| !! | CTCAATGCTCTAAGTATTGA+GGG | + | Chr8:5319758-5319777 | None:intergenic | 35.0% |
| AATTCAACCTCATTCTGAGC+TGG | + | Chr8:5318930-5318949 | None:intergenic | 40.0% | |
| ACTTCGCTTGCTTAGTGATT+TGG | - | Chr8:5319085-5319104 | MsG0880042203.01.T01:CDS | 40.0% | |
| ATTAATAGGCATCTCTCGTG+TGG | - | Chr8:5319463-5319482 | MsG0880042203.01.T01:CDS | 40.0% | |
| ATTCAACCTCATTCTGAGCT+GGG | + | Chr8:5318929-5318948 | None:intergenic | 40.0% | |
| CAATGAAGGGTTTCTTGCAA+TGG | + | Chr8:5319246-5319265 | None:intergenic | 40.0% | |
| CGTATTGAAAAACCTCTCCT+CGG | + | Chr8:5319786-5319805 | None:intergenic | 40.0% | |
| CTTCGCTTGCTTAGTGATTT+GGG | - | Chr8:5319086-5319105 | MsG0880042203.01.T01:CDS | 40.0% | |
| GTTGCACAGTATGAAGAGTT+AGG | - | Chr8:5319299-5319318 | MsG0880042203.01.T01:CDS | 40.0% | |
| GTTTGTCAGATGCCATGATA+AGG | - | Chr8:5319805-5319824 | MsG0880042203.01.T01:CDS | 40.0% | |
| TCAAGGAATTGGACTACTAG+AGG | - | Chr8:5319893-5319912 | MsG0880042203.01.T01:CDS | 40.0% | |
| TGTGGAAACAATTCGCGAAA+AGG | - | Chr8:5319481-5319500 | MsG0880042203.01.T01:CDS | 40.0% | |
| TTCCATCTTCTCATCGTCAA+AGG | + | Chr8:5319387-5319406 | None:intergenic | 40.0% | |
| TTCCTTTGACGATGAGAAGA+TGG | - | Chr8:5319382-5319401 | MsG0880042203.01.T01:CDS | 40.0% | |
| ! | CCTCAATGCTCTAAGTATTG+AGG | + | Chr8:5319759-5319778 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTCTAGCAATGA+AGG | - | Chr8:5319703-5319722 | MsG0880042203.01.T01:CDS | 40.0% |
| !! | CCTCAATACTTAGAGCATTG+AGG | - | Chr8:5319756-5319775 | MsG0880042203.01.T01:CDS | 40.0% |
| !! | GTTTTGAGTAAATGGGGTTG+CGG | - | Chr8:5318987-5319006 | MsG0880042203.01.T01:CDS | 40.0% |
| !! | TTCATTGCTAGAAGCACTCT+TGG | + | Chr8:5319704-5319723 | None:intergenic | 40.0% |
| !!! | AGTTTTGACTGAACCTGAGA+AGG | + | Chr8:5319068-5319087 | None:intergenic | 40.0% |
| AAGTAGGATTGGGCTTTCCA+AGG | - | Chr8:5319412-5319431 | MsG0880042203.01.T01:CDS | 45.0% | |
| AGGTATACCGAAAAGGGACT+TGG | - | Chr8:5319319-5319338 | MsG0880042203.01.T01:CDS | 45.0% | |
| AGTCGAGTCCTGAAAAATCG+AGG | + | Chr8:5319152-5319171 | None:intergenic | 45.0% | |
| CAAGCCTCTCGTCGAAATTA+TGG | + | Chr8:5319178-5319197 | None:intergenic | 45.0% | |
| ! | AATGATGATTTTGCGGCCGA+CGG | - | Chr8:5319346-5319365 | MsG0880042203.01.T01:CDS | 45.0% |
| ! | ATTGCAGGCCTCGATTTTTC+AGG | - | Chr8:5319141-5319160 | MsG0880042203.01.T01:CDS | 45.0% |
| ACTTTCGTCGAATAGGTGGC+AGG | + | Chr8:5318906-5318925 | None:intergenic | 50.0% | |
| AGCTGGGACTTTCGTCGAAT+AGG | + | Chr8:5318913-5318932 | None:intergenic | 50.0% | |
| GAAAGTCCCAGCTCAGAATG+AGG | - | Chr8:5318920-5318939 | MsG0880042203.01.T01:CDS | 50.0% | |
| GATCTGCATTGCGCAAAGAC+GGG | + | Chr8:5319046-5319065 | None:intergenic | 50.0% | |
| GGATCTGCATTGCGCAAAGA+CGG | + | Chr8:5319047-5319066 | None:intergenic | 50.0% | |
| TGGGACTTTCGTCGAATAGG+TGG | + | Chr8:5318910-5318929 | None:intergenic | 50.0% | |
| !! | TAGAGCATTGAGGATGTCCG+AGG | - | Chr8:5319766-5319785 | MsG0880042203.01.T01:CDS | 50.0% |
| CATTGAGGATGTCCGAGGAG+AGG | - | Chr8:5319771-5319790 | MsG0880042203.01.T01:CDS | 55.0% | |
| GCGCAATGCAGATCCTTCTC+AGG | - | Chr8:5319052-5319071 | MsG0880042203.01.T01:CDS | 55.0% | |
| GGGTTGCGGTGACGACGATT+TGG | - | Chr8:5319001-5319020 | MsG0880042203.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 5318900 | 5319928 | 5318900 | ID=MsG0880042203.01;Name=MsG0880042203.01 |
| Chr8 | mRNA | 5318900 | 5319928 | 5318900 | ID=MsG0880042203.01.T01;Parent=MsG0880042203.01;Name=MsG0880042203.01.T01;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|342 |
| Chr8 | exon | 5318900 | 5319928 | 5318900 | ID=MsG0880042203.01.T01:exon:1252;Parent=MsG0880042203.01.T01 |
| Chr8 | CDS | 5318900 | 5319928 | 5318900 | ID=MsG0880042203.01.T01:cds;Parent=MsG0880042203.01.T01 |
| Gene Sequence |
| Protein sequence |
