AlfalfaGEDB | MsG0880047606.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047606.01

KEGG: K25186
GO: GO:0005515
PFAM: PF04641

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047606.01.T01	AES92550.2	90.09	444	27	2	1	444	1	427	0	760
MsG0880047606.01.T01	AES92550.2	77.419	62	11	2	298	359	391	449	1.97E-14	87.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047606.01.T01	Q3T1J8	34.701	268	148	6	100	342	19	284	1.41E-34	134

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047606.01.T01	G7JGT3	90.090	444	27	2	1	444	1	427	0.0	760

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048178.01	MsG0880047606.01	0.819151	1.349740e-52	1.030372e-49
MsG0180000235.01	MsG0880047606.01	0.804435	2.162960e-49	1.115125e-46
MsG0180000494.01	MsG0880047606.01	0.803869	2.837837e-49	1.442027e-46
MsG0180000555.01	MsG0880047606.01	0.802877	4.553293e-49	2.255502e-46
MsG0180000856.01	MsG0880047606.01	0.826859	2.152964e-54	2.043493e-51
MsG0180001312.01	MsG0880047606.01	0.811720	6.079327e-51	3.791235e-48
MsG0180001904.01	MsG0880047606.01	0.836152	1.106177e-56	1.382149e-53
MsG0180001922.01	MsG0880047606.01	0.812993	3.204662e-51	2.067672e-48
MsG0180003744.01	MsG0880047606.01	0.813302	2.742049e-51	1.784018e-48
MsG0180004598.01	MsG0880047606.01	0.800326	1.519136e-48	7.053618e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047606.01.T01	MTR_4g131190	90.090	444	27	2	1	444	1	427	0.0	760
MsG0880047606.01.T01	MTR_4g131190	77.419	62	11	2	298	359	391	449	2.38e-18	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047606.01.T01	AT5G58020	59.091	374	115	10	1	359	1	351	2.98e-125	367

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Find 129 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGATAGCATTTGCCC+GGG	0.632087	8:-88706894	None:intergenic
AAAGATGGAAGCATAGACCT+CGG	0.688248	8:-88705437	None:intergenic
AAATTGGTGTCATCGGAGAG+AGG	0.634387	8:-88704590	None:intergenic
AACAAAGGTGTTAATGGTGG+TGG	0.571711	8:+88705361	MsG0880047606.01.T01:CDS
AAGAAGCTTCCTAAGGAGTT+TGG	0.293751	8:+88704887	MsG0880047606.01.T01:CDS
AAGAATGGGAAGGTTGGGAA+TGG	0.553953	8:+88705337	MsG0880047606.01.T01:CDS
AAGCCTTAGCACTCAAAACA+TGG	0.582980	8:-88705051	None:intergenic
AAGGAGTTTGGGTATATTAA+GGG	0.359556	8:+88704899	MsG0880047606.01.T01:CDS
AAGGTTGGGAATGGTAACAA+AGG	0.663525	8:+88705346	MsG0880047606.01.T01:CDS
AAGTTCCGGTGTCCAGTTGC+GGG	0.298340	8:+88704980	MsG0880047606.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACAATCCTAGTTAGAT+AGG	-	Chr8:88706465-88706484	None:intergenic	30.0%
AAGGAGTTTGGGTATATTAA+GGG	+	Chr8:88704899-88704918	MsG0880047606.01.T01:CDS	30.0%
AATATAAAGCAGCCAAGAAA+TGG	+	Chr8:88706260-88706279	MsG0880047606.01.T01:intron	30.0%
AATGGGAACAAATGTCTTAA+TGG	+	Chr8:88706833-88706852	MsG0880047606.01.T01:CDS	30.0%
AGAAAGATGATTGTGAATTG+GGG	-	Chr8:88704550-88704569	None:intergenic	30.0%
AGAAGTTAATTTCTACCAAG+AGG	-	Chr8:88705514-88705533	None:intergenic	30.0%
ATCATTATTCTTCACCTTCT+TGG	-	Chr8:88705224-88705243	None:intergenic	30.0%
CAAACATATCTTCAACCTAA+GGG	+	Chr8:88706127-88706146	MsG0880047606.01.T01:intron	30.0%
CTTCATCTACAAAGTAAGAT+TGG	-	Chr8:88706081-88706100	None:intergenic	30.0%
GGGATAAGATTGTGATTAAT+GGG	+	Chr8:88705128-88705147	MsG0880047606.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	88704440	88706928	88704440	ID=MsG0880047606.01;Name=MsG0880047606.01
Chr8	mRNA	88704440	88706928	88704440	ID=MsG0880047606.01.T01;Parent=MsG0880047606.01;Name=MsG0880047606.01.T01;_AED=0.50;_eAED=0.56;_QI=0\|0\|0\|1\|1\|1\|3\|0\|446
Chr8	exon	88704440	88705517	88704440	ID=MsG0880047606.01.T01:exon:16012;Parent=MsG0880047606.01.T01
Chr8	exon	88705644	88705677	88705644	ID=MsG0880047606.01.T01:exon:16013;Parent=MsG0880047606.01.T01
Chr8	exon	88706700	88706928	88706700	ID=MsG0880047606.01.T01:exon:16014;Parent=MsG0880047606.01.T01
Chr8	CDS	88704440	88705517	88704440	ID=MsG0880047606.01.T01:cds;Parent=MsG0880047606.01.T01
Chr8	CDS	88705644	88705677	88705644	ID=MsG0880047606.01.T01:cds;Parent=MsG0880047606.01.T01
Chr8	CDS	88706700	88706928	88706700	ID=MsG0880047606.01.T01:cds;Parent=MsG0880047606.01.T01

Gene Sequence

>MsG0880047606.01.T01

ATGCATCGCAAATCATTCCAAATCCTTGTTCAATCACCGGACCTACAAATTCACCCTAAATCCGTCACCGGCGATGAAACCCTCTCCGATCTAAAACACTCTTTCTTCCCCAATTCACAATCATCTTTCTACTTCACCCTCAACGGAAAACCTCTCTCCGATGACACCAATTTCTCCACCTCCGGAATCGCACCTCTATCAACCCTAGTTCTTCAATCACGCCTCCGTGGTGGCGGTGGAGATGGAGGCTCTACATGTGCCGAGTCACGTGACTGCTACCTCAAGATGTACGCGGAGAAGAAACCTGATAAGGTTGATCCAAACGAGCAGAGGCTATCGAAATGGCAGAACTGTGCGTTATCGAATGAACCTTTACGTGAACCCTGTGTGATTGATAAGCTTGGGAATATTTTCAATAAGGAATCGTTGGTGGAAGCTTTGTTGGGGAAGAAGCTTCCTAAGGAGTTTGGGTATATTAAGGGTTTGAAGGATATGATTAAAATTAAGCTAGAATCTGTTCCTGGTGAGGATGATGGTGCTAAGTTCCGGTGTCCAGTTGCGGGGCTTGAATTCAACGGAAAGTATAAGTTTTTCGCGTTGAGGAATTGTGGCCATGTTTTGAGTGCTAAGGCTTTGAAAGAGGTTAAATCTTCAGCATGTTTGGTTTGTCATGAGGAATTTGGTGAGGGGGATAAGATTGTGATTAATGGGAATGAAGAAGAGGTTGAGGTTTTGAGGGAGAGGATGGAGGAGGAGAAGGCTAAGGTTAGGGAGAAGAAAACCAAGAAGGTGAAGAATAATGATAGTGAAGCTGTGAATGGTTTGAGTTTGGAAGTGTCGAAGTTGAGTGGTACTAAGCATGATTTGACTGTGGAGAAGGCTTCGGCTAAGGTGGATAAGAATGGGAAGGTTGGGAATGGTAACAAAGGTGTTAATGGTGGTGGTGCTGCTGCTGCTAAGCGTTTCAAGGCAACTGATATTGCCCCGGCAAATGCTACCGAGGTCTATGCTTCCATCTTTACTTCTTCTAGAAAGTCCGAGTTTAAAGAAACGTATTCTTGCAGGTCTCTGCCTCTTGTTATGGAACAAAATGTTAAAAATTTCATTCAATGTGCTGGGCGAATGCACTATGGTTTGTTAAGCAGACTCCAAAAATTGAAGTGCAGTGGTGCGAATAGCTTGGAGTACTATAGTGTAGAGGATAATTTTATTCACAATATAATTAACATACGGTTTAAGGCTGCTAATGGGAACAAATGTCTTAATGGCGGTGCTGCTGCTAACCGTTTTAAGGCGACTGATATAGCCCGGGCAAATGCTATCGATTTTTACTTCTTCTAG

Protein sequence

>MsG0880047606.01.T01

MHRKSFQILVQSPDLQIHPKSVTGDETLSDLKHSFFPNSQSSFYFTLNGKPLSDDTNFSTSGIAPLSTLVLQSRLRGGGGDGGSTCAESRDCYLKMYAEKKPDKVDPNEQRLSKWQNCALSNEPLREPCVIDKLGNIFNKESLVEALLGKKLPKEFGYIKGLKDMIKIKLESVPGEDDGAKFRCPVAGLEFNGKYKFFALRNCGHVLSAKALKEVKSSACLVCHEEFGEGDKIVINGNEEEVEVLRERMEEEKAKVREKKTKKVKNNDSEAVNGLSLEVSKLSGTKHDLTVEKASAKVDKNGKVGNGNKGVNGGGAAAAKRFKATDIAPANATEVYASIFTSSRKSEFKETYSCRSLPLVMEQNVKNFIQCAGRMHYGLLSRLQKLKCSGANSLEYYSVEDNFIHNIINIRFKAANGNKCLNGGAAANRFKATDIARANAIDFYFF*