AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011182.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011182.01.T01 MTR_2g100240 99.647 283 1 0 1 283 1 283 0.0 575
MsG0280011182.01.T01 MTR_2g060900 36.842 285 138 5 13 255 1 285 1.02e-48 164
MsG0280011182.01.T01 MTR_7g019180 36.859 312 162 9 1 281 1 308 5.45e-47 162
MsG0280011182.01.T01 MTR_4g129730 35.065 231 149 1 32 262 1 230 1.51e-40 142
MsG0280011182.01.T01 MTR_4g129730 35.931 231 136 3 32 262 1 219 4.40e-40 140
MsG0280011182.01.T01 MTR_5g072760 31.224 237 152 5 44 270 37 272 2.59e-35 128
MsG0280011182.01.T01 MTR_5g072760 31.364 220 142 4 44 255 37 255 1.80e-33 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011182.01.T01 AT1G55170 51.049 286 132 4 1 282 1 282 1.77e-86 260
MsG0280011182.01.T01 AT3G14750 38.696 230 131 3 37 257 63 291 1.73e-46 159
MsG0280011182.01.T01 AT1G67170 38.647 207 127 0 33 239 47 253 5.66e-42 148
MsG0280011182.01.T01 AT1G67170 38.647 207 127 0 33 239 47 253 5.66e-42 148
MsG0280011182.01.T01 AT2G30120 26.957 230 154 1 42 257 37 266 2.59e-21 91.7
MsG0280011182.01.T01 AT2G30120 26.754 228 153 1 42 255 37 264 6.04e-21 90.1
MsG0280011182.01.T01 AT2G30120 26.638 229 154 1 41 255 36 264 6.70e-21 90.5
MsG0280011182.01.T01 AT5G61920 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
MsG0280011182.01.T01 AT5G61920 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
MsG0280011182.01.T01 AT5G61920 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
MsG0280011182.01.T01 AT5G61920 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
MsG0280011182.01.T01 AT5G61920 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
MsG0280011182.01.T01 AT5G61920 28.902 173 123 0 49 221 17 189 1.55e-16 76.6
MsG0280011182.01.T01 AT2G30120 27.972 143 103 0 39 181 34 176 1.13e-11 62.8
MsG0280011182.01.T01 AT2G30120 27.972 143 103 0 39 181 34 176 1.64e-11 62.0
MsG0280011182.01.T01 AT2G30120 27.972 143 103 0 39 181 34 176 1.64e-11 62.0

Find 90 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAGAAAGGTCCTCTTTA+TGG 0.176094 2:+80670022 MsG0280011182.01.T01:CDS
TTGCCTTATGGAACAAATTT+TGG 0.192469 2:+80669853 MsG0280011182.01.T01:CDS
ATTCATGCAGGTTTGCCTTA+TGG 0.235597 2:+80669841 MsG0280011182.01.T01:intron
ATGGGGTGGGTACTGCTTCT+AGG 0.246552 2:+80670041 MsG0280011182.01.T01:CDS
CACTTACGAAAGATGTTTCT+AGG 0.253529 2:+80668785 MsG0280011182.01.T01:CDS
AGTATCAAACAAGAACTTTC+TGG 0.261139 2:+80668751 MsG0280011182.01.T01:CDS
CACGAAGTTTCTCAACTTCT+CGG 0.317894 2:-80669082 None:intergenic
ACAGTATATTAATTGCAAAT+AGG 0.325127 2:-80670211 None:intergenic
GAGATAAAAGACCATTAAAA+TGG 0.326020 2:-80670189 None:intergenic
ACCTAGCACGCATCAGTTCT+TGG 0.336174 2:-80668864 None:intergenic
ACCTCATCCAGCATTGTTAG+AGG 0.338446 2:+80668456 MsG0280011182.01.T01:CDS
CCTCCATATGCAGATGGATA+TGG 0.340583 2:+80669898 MsG0280011182.01.T01:CDS
CAGAGAAAGGTCCTCTTTAT+GGG 0.349670 2:+80670023 MsG0280011182.01.T01:CDS
TCAATGAGATCTGAGATTGA+TGG 0.370744 2:+80668835 MsG0280011182.01.T01:CDS
GGAGGCTGGTGGCGGATAAC+AGG 0.382841 2:+80668509 MsG0280011182.01.T01:CDS
CTTCCGATGGATACCCTCTT+CGG 0.387777 2:-80668387 None:intergenic
GAAGGCAAACATGGAGTTCA+TGG 0.395776 2:+80669019 MsG0280011182.01.T01:CDS
CTACCAAAATTTGTTCCATA+AGG 0.410355 2:-80669856 None:intergenic
TGAAGTTGGAGTCTGATCTT+AGG 0.426762 2:+80668668 MsG0280011182.01.T01:CDS
GGTGGTGGCCCGCGAGCATA+AGG 0.435456 2:-80668412 None:intergenic
TAGCATGGATGGAAGACATT+GGG 0.438242 2:+80669115 MsG0280011182.01.T01:CDS
TTTCTCAACTTCTCGGGCCA+TGG 0.443621 2:-80669075 None:intergenic
TTCCGATGGATACCCTCTTC+GGG 0.447941 2:-80668386 None:intergenic
AAACATCTTTCGTAAGTGTC+TGG 0.450505 2:-80668780 None:intergenic
GTTTAGGCTGCTGCAGAGAA+AGG 0.464656 2:+80670010 MsG0280011182.01.T01:intron
GATGGAAGACATTGGGGAGC+TGG 0.465511 2:+80669122 MsG0280011182.01.T01:CDS
GTATCAAACAAGAACTTTCT+GGG 0.473347 2:+80668752 MsG0280011182.01.T01:CDS
TCAATCTCAGATCTCATTGA+AGG 0.475047 2:-80668832 None:intergenic
ACGAAGTTTCTCAACTTCTC+GGG 0.483936 2:-80669081 None:intergenic
TACTTCGCTAACACAGCTAA+AGG 0.487483 2:-80670142 None:intergenic
AGCTCTTCCTCTAACAATGC+TGG 0.487736 2:-80668463 None:intergenic
ACACCATATCCATCTGCATA+TGG 0.495250 2:-80669901 None:intergenic
TTAAGTTTAAAATATTGTGT+TGG 0.504850 2:+80670308 MsG0280011182.01.T01:three_prime_UTR
GCGAGACCTTGCAGCTGCGA+AGG 0.508426 2:+80668561 MsG0280011182.01.T01:CDS
TATGGTGGATTATGAAAAGA+AGG 0.509898 2:+80669001 MsG0280011182.01.T01:CDS
TACCCTCTTCGGGAACTCAT+TGG 0.513298 2:-80668376 None:intergenic
ACTTCGCTAACACAGCTAAA+GGG 0.514081 2:-80670141 None:intergenic
TCCTCTAACAATGCTGGATG+AGG 0.514770 2:-80668457 None:intergenic
TGCTGTCGTGGCATTGGTGG+TGG 0.516987 2:-80668427 None:intergenic
TATCCATCTGCATATGGAGG+TGG 0.517988 2:-80669895 None:intergenic
GCTGAGCTTGCTAGCATGGA+TGG 0.521001 2:+80669104 MsG0280011182.01.T01:CDS
TCGTGCTGAGCTTGCTAGCA+TGG 0.521988 2:+80669100 MsG0280011182.01.T01:CDS
CTGAACATGAGATGCATTCG+AGG 0.524074 2:+80668626 MsG0280011182.01.T01:CDS
CATCGTATGAATTTAGCGAT+TGG 0.524610 2:+80668592 MsG0280011182.01.T01:CDS
GCAGTACCCACCCCATAAAG+AGG 0.528840 2:-80670034 None:intergenic
AGACCTTGCAGCTGCGAAGG+AGG 0.529458 2:+80668564 MsG0280011182.01.T01:CDS
CATGGAACAGAGGCAGTCAA+TGG 0.533149 2:+80669037 MsG0280011182.01.T01:CDS
TGTATAACTTCATTCTTCAA+CGG 0.535567 2:-80668700 None:intergenic
GGAATATGCTGTCGTGGCAT+TGG 0.548596 2:-80668433 None:intergenic
TCTAACAATGCTGGATGAGG+TGG 0.550555 2:-80668454 None:intergenic
CCTCTTCGGGAACTCATTGG+TGG 0.551456 2:-80668373 None:intergenic
AACACAGCTAAAGGGATGGC+AGG 0.555700 2:-80670133 None:intergenic
CTAGCATGGATGGAAGACAT+TGG 0.560779 2:+80669114 MsG0280011182.01.T01:CDS
TCGGAAGGTCCTTATGCTCG+CGG 0.566608 2:+80668403 MsG0280011182.01.T01:CDS
ACCAAGAACTGATGCGTGCT+AGG 0.567292 2:+80668863 MsG0280011182.01.T01:CDS
TTATGAAAAGAAGGCAAACA+TGG 0.573229 2:+80669010 MsG0280011182.01.T01:CDS
GCTCCTCCTTCGCAGCTGCA+AGG 0.574836 2:-80668567 None:intergenic
ATTCAACGACGGTTTGAGCG+AGG 0.579107 2:-80670079 None:intergenic
AAAGGTCCTCTTTATGGGGT+GGG 0.581180 2:+80670028 MsG0280011182.01.T01:CDS
TGAATCTAAGTGATTGATGT+TGG 0.581375 2:+80670097 MsG0280011182.01.T01:exon
CGCTAACACAGCTAAAGGGA+TGG 0.585429 2:-80670137 None:intergenic
GAAAGGTCCTCTTTATGGGG+TGG 0.586390 2:+80670027 MsG0280011182.01.T01:CDS
ATATGCTGTCGTGGCATTGG+TGG 0.591214 2:-80668430 None:intergenic
ACAGGAGGTTGATTGATGAT+CGG 0.594043 2:+80668527 MsG0280011182.01.T01:CDS
TTCCCACCTCCATATGCAGA+TGG 0.594536 2:+80669892 MsG0280011182.01.T01:CDS
ATCCATCTGCATATGGAGGT+GGG 0.596363 2:-80669894 None:intergenic
CGGAAGGTCCTTATGCTCGC+GGG 0.597736 2:+80668404 MsG0280011182.01.T01:CDS
CAAACAAGAACTTTCTGGGA+AGG 0.599275 2:+80668756 MsG0280011182.01.T01:CDS
TAGCTGTGTTAGCGAAGTAG+CGG 0.599283 2:+80670146 MsG0280011182.01.T01:three_prime_UTR
TTGATGTTGGTGATGAAGAA+AGG 0.600863 2:+80670110 MsG0280011182.01.T01:three_prime_UTR
TGAAATGAGGAGGCTGGTGG+CGG 0.604523 2:+80668501 MsG0280011182.01.T01:CDS
GCATGCTGAAATGAGGAGGC+TGG 0.605896 2:+80668495 MsG0280011182.01.T01:CDS
GGCTGGTGGCGGATAACAGG+AGG 0.608308 2:+80668512 MsG0280011182.01.T01:CDS
CACCAATGAGTTCCCGAAGA+GGG 0.614590 2:+80668374 MsG0280011182.01.T01:CDS
CGAGCATAAGGACCTTCCGA+TGG 0.617038 2:-80668400 None:intergenic
CGAAGAGGGTATCCATCGGA+AGG 0.623087 2:+80668388 MsG0280011182.01.T01:CDS
AAGTGCAGCATGCTGAAATG+AGG 0.630681 2:+80668488 MsG0280011182.01.T01:CDS
TTCCCGAAGAGGGTATCCAT+CGG 0.640372 2:+80668384 MsG0280011182.01.T01:CDS
AGCATGGATGGAAGACATTG+GGG 0.653311 2:+80669116 MsG0280011182.01.T01:CDS
TGAGGTGGAATATGCTGTCG+TGG 0.657020 2:-80668439 None:intergenic
CCATATCCATCTGCATATGG+AGG 0.657742 2:-80669898 None:intergenic
TGCTGAAATGAGGAGGCTGG+TGG 0.673111 2:+80668498 MsG0280011182.01.T01:CDS
TGAACATGAGATGCATTCGA+GGG 0.676175 2:+80668627 MsG0280011182.01.T01:CDS
AGAGAAAGGTCCTCTTTATG+GGG 0.677550 2:+80670024 MsG0280011182.01.T01:CDS
TGCAGCATGCTGAAATGAGG+AGG 0.680683 2:+80668491 MsG0280011182.01.T01:CDS
CAATCACTTAGATTCAACGA+CGG 0.682596 2:-80670090 None:intergenic
TTGGTGGCTCTCTATGAACA+CGG 0.684269 2:-80668357 None:intergenic
ACATGGAGTTCATGGAACAG+AGG 0.685058 2:+80669027 MsG0280011182.01.T01:CDS
CCACCAATGAGTTCCCGAAG+AGG 0.693852 2:+80668373 MsG0280011182.01.T01:CDS
AGATGGATATGGTGTTCACA+TGG 0.705947 2:+80669909 MsG0280011182.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATACTGTTAATTTTAAA+TGG + Chr2:80670224-80670243 MsG0280011182.01.T01:three_prime_UTR 10.0%
!! TTAATAAAAGACATGAAAAA+CGG + Chr2:80669298-80669317 MsG0280011182.01.T01:intron 15.0%
!!! ATTTTTGTTTTATAGAACTA+TGG + Chr2:80668983-80669002 MsG0280011182.01.T01:intron 15.0%
!!! TTAAGTTTAAAATATTGTGT+TGG + Chr2:80670308-80670327 MsG0280011182.01.T01:three_prime_UTR 15.0%
!! AATGAAATGACATGAATAAT+AGG + Chr2:80669267-80669286 MsG0280011182.01.T01:intron 20.0%
!! ACAGTATATTAATTGCAAAT+AGG - Chr2:80670214-80670233 None:intergenic 20.0%
!! ATCCAATTAACACAAATAAT+AGG - Chr2:80669691-80669710 None:intergenic 20.0%
!! ATCCTATTATTTGTGTTAAT+TGG + Chr2:80669686-80669705 MsG0280011182.01.T01:intron 20.0%
!! ATTCTCTTCAATTTCTAATT+AGG + Chr2:80667911-80667930 MsG0280011182.01.T01:intron 20.0%
!! TTTGTACTAATGGAAATAAA+AGG - Chr2:80668131-80668150 None:intergenic 20.0%
!!! TAATTTTAAATGGCATATGT+AGG + Chr2:80670234-80670253 MsG0280011182.01.T01:three_prime_UTR 20.0%
!!! TGTTGATAAAAATATGAAGT+TGG + Chr2:80668654-80668673 MsG0280011182.01.T01:CDS 20.0%
!!! TTTCACGTGTTTTATTTTTT+GGG + Chr2:80667979-80667998 MsG0280011182.01.T01:intron 20.0%
!!! TTTTGTGTATTATGTGATTA+CGG - Chr2:80669396-80669415 None:intergenic 20.0%
!!! TTTTTTAGAATTTAGGCAAT+TGG + Chr2:80669423-80669442 MsG0280011182.01.T01:intron 20.0%
! AATCAAAAACATCAAATCCA+TGG - Chr2:80668039-80668058 None:intergenic 25.0%
! AATCACATAATACACAAAAG+TGG + Chr2:80669397-80669416 MsG0280011182.01.T01:intron 25.0%
! AATGAAGCAAACGTTAAAAA+AGG - Chr2:80669824-80669843 None:intergenic 25.0%
! ATCAAAAACATCAAATCCAT+GGG - Chr2:80668038-80668057 None:intergenic 25.0%
! ATCTTTCAGACAATTATGAA+GGG - Chr2:80669355-80669374 None:intergenic 25.0%
! ATGAAGCAAACGTTAAAAAA+GGG - Chr2:80669823-80669842 None:intergenic 25.0%
! ATTAGTACAAACACTTCTAA+TGG + Chr2:80668140-80668159 MsG0280011182.01.T01:intron 25.0%
! CCATTTCAATTTACCTAAAA+GGG - Chr2:80668327-80668346 None:intergenic 25.0%
! GAGATAAAAGACCATTAAAA+TGG - Chr2:80670192-80670211 None:intergenic 25.0%
! TGTATAACTTCATTCTTCAA+CGG - Chr2:80668703-80668722 None:intergenic 25.0%
!! GGTCTAAAATTATTGTGTTA+AGG - Chr2:80669945-80669964 None:intergenic 25.0%
!! TTTTGTAAGCTAACAATACA+TGG - Chr2:80668014-80668033 None:intergenic 25.0%
!!! AGAATTTTAGTATTCATCGA+GGG + Chr2:80669541-80669560 MsG0280011182.01.T01:intron 25.0%
!!! ATTAGAAGTGTTTGTACTAA+TGG - Chr2:80668141-80668160 None:intergenic 25.0%
!!! CCTTTTAGGTAAATTGAAAT+GGG + Chr2:80668325-80668344 MsG0280011182.01.T01:intron 25.0%
!!! GTTTCACGTGTTTTATTTTT+TGG + Chr2:80667978-80667997 MsG0280011182.01.T01:intron 25.0%
!!! TTTGTTTTATAGAACTATGG+TGG + Chr2:80668986-80669005 MsG0280011182.01.T01:intron 25.0%
AAGCAAAGTAAATGAAACCT+TGG - Chr2:80669982-80670001 None:intergenic 30.0%
AAGGATGATAAATTCTGCAA+AGG - Chr2:80669168-80669187 None:intergenic 30.0%
AGTATCAAACAAGAACTTTC+TGG + Chr2:80668751-80668770 MsG0280011182.01.T01:CDS 30.0%
ATAATTGTCTGAAAGATGGT+TGG + Chr2:80669358-80669377 MsG0280011182.01.T01:intron 30.0%
CATCTTTCAGACAATTATGA+AGG - Chr2:80669356-80669375 None:intergenic 30.0%
CCCATTTCAATTTACCTAAA+AGG - Chr2:80668328-80668347 None:intergenic 30.0%
CTTCATAATTGTCTGAAAGA+TGG + Chr2:80669354-80669373 MsG0280011182.01.T01:intron 30.0%
GAGTTAAGGTGATTAAGAAT+AGG - Chr2:80669477-80669496 None:intergenic 30.0%
GCTATGCTAGTAAATACATA+TGG - Chr2:80669203-80669222 None:intergenic 30.0%
GTATCAAACAAGAACTTTCT+GGG + Chr2:80668752-80668771 MsG0280011182.01.T01:CDS 30.0%
TAATTGTCTGAAAGATGGTT+GGG + Chr2:80669359-80669378 MsG0280011182.01.T01:intron 30.0%
TATAGACACATCATGATGTT+TGG + Chr2:80669721-80669740 MsG0280011182.01.T01:intron 30.0%
TGAAGCAAACGTTAAAAAAG+GGG - Chr2:80669822-80669841 None:intergenic 30.0%
TGAATCTAAGTGATTGATGT+TGG + Chr2:80670097-80670116 MsG0280011182.01.T01:exon 30.0%
TTATGAAAAGAAGGCAAACA+TGG + Chr2:80669010-80669029 MsG0280011182.01.T01:CDS 30.0%
! ATATCTTTCGATCTTTTGAC+TGG + Chr2:80669594-80669613 MsG0280011182.01.T01:intron 30.0%
! CTACCAAAATTTGTTCCATA+AGG - Chr2:80669859-80669878 None:intergenic 30.0%
! TCTATCTTTAAGCATCCTTT+TGG + Chr2:80668919-80668938 MsG0280011182.01.T01:intron 30.0%
! TTGCCTTATGGAACAAATTT+TGG + Chr2:80669853-80669872 MsG0280011182.01.T01:CDS 30.0%
!! CAGAATTTTAGTATTCATCG+AGG + Chr2:80669540-80669559 MsG0280011182.01.T01:intron 30.0%
!! CCCTTTTAGGTAAATTGAAA+TGG + Chr2:80668324-80668343 MsG0280011182.01.T01:intron 30.0%
!! CTATGTGATGATTTTGAGAA+CGG + Chr2:80669517-80669536 MsG0280011182.01.T01:intron 30.0%
!! GAGAATTTTGATGAAGAAGA+GGG - Chr2:80667869-80667888 None:intergenic 30.0%
!! TATGGTGGATTATGAAAAGA+AGG + Chr2:80669001-80669020 MsG0280011182.01.T01:CDS 30.0%
!! TGAGAATTTTGATGAAGAAG+AGG - Chr2:80667870-80667889 None:intergenic 30.0%
!!! GTGGCAGTTTTTTAGAATTT+AGG + Chr2:80669416-80669435 MsG0280011182.01.T01:intron 30.0%
AAACATCTTTCGTAAGTGTC+TGG - Chr2:80668783-80668802 None:intergenic 35.0%
AATTGTCTGAAAGATGGTTG+GGG + Chr2:80669360-80669379 MsG0280011182.01.T01:intron 35.0%
ACCTTGGAAAATTGAATACG+AGG - Chr2:80669966-80669985 None:intergenic 35.0%
CAATCACTTAGATTCAACGA+CGG - Chr2:80670093-80670112 None:intergenic 35.0%
CACTTACGAAAGATGTTTCT+AGG + Chr2:80668785-80668804 MsG0280011182.01.T01:CDS 35.0%
CATCGTATGAATTTAGCGAT+TGG + Chr2:80668592-80668611 MsG0280011182.01.T01:CDS 35.0%
GGAGTTCATTAGTGATAACA+GGG + Chr2:80669562-80669581 MsG0280011182.01.T01:intron 35.0%
TCAATCTCAGATCTCATTGA+AGG - Chr2:80668835-80668854 None:intergenic 35.0%
! ACCTCGTATTCAATTTTCCA+AGG + Chr2:80669962-80669981 MsG0280011182.01.T01:intron 35.0%
! ATGCTACAGTATCTGCATTT+TGG - Chr2:80669668-80669687 None:intergenic 35.0%
! TCAATGAGATCTGAGATTGA+TGG + Chr2:80668835-80668854 MsG0280011182.01.T01:CDS 35.0%
! TCTTTAAGCATCCTTTTGGT+TGG + Chr2:80668923-80668942 MsG0280011182.01.T01:intron 35.0%
! TGTTAGCTTACAAAAACCCA+TGG + Chr2:80668019-80668038 MsG0280011182.01.T01:intron 35.0%
! TTGTGGATTGATTGCTAACA+CGG + Chr2:80668887-80668906 MsG0280011182.01.T01:intron 35.0%
!! AACAAATTTTGGTAGTCCAG+AGG + Chr2:80669864-80669883 MsG0280011182.01.T01:CDS 35.0%
!! ACAAATTTTGGTAGTCCAGA+GGG + Chr2:80669865-80669884 MsG0280011182.01.T01:CDS 35.0%
!! CTTTAAGCATCCTTTTGGTT+GGG + Chr2:80668924-80668943 MsG0280011182.01.T01:intron 35.0%
!! TTGATGTTGGTGATGAAGAA+AGG + Chr2:80670110-80670129 MsG0280011182.01.T01:three_prime_UTR 35.0%
!!! GTGTATGCATGCCATTTTAA+TGG + Chr2:80670178-80670197 MsG0280011182.01.T01:three_prime_UTR 35.0%
!!! TGTGCTTTACTGTTTTTACC+TGG + Chr2:80670263-80670282 MsG0280011182.01.T01:three_prime_UTR 35.0%
AACGTTTGCTTCATTCATGC+AGG + Chr2:80669829-80669848 MsG0280011182.01.T01:intron 40.0%
ACACCATATCCATCTGCATA+TGG - Chr2:80669904-80669923 None:intergenic 40.0%
ACGAAGTTTCTCAACTTCTC+GGG - Chr2:80669084-80669103 None:intergenic 40.0%
ACTTCGCTAACACAGCTAAA+GGG - Chr2:80670144-80670163 None:intergenic 40.0%
AGAGAAAGGTCCTCTTTATG+GGG + Chr2:80670024-80670043 MsG0280011182.01.T01:CDS 40.0%
AGATGGATATGGTGTTCACA+TGG + Chr2:80669909-80669928 MsG0280011182.01.T01:CDS 40.0%
ATGCAGAAATCCCAACCAAA+AGG - Chr2:80668937-80668956 None:intergenic 40.0%
ATTCATGCAGGTTTGCCTTA+TGG + Chr2:80669841-80669860 MsG0280011182.01.T01:intron 40.0%
ATTGTCTGAAAGATGGTTGG+GGG + Chr2:80669361-80669380 MsG0280011182.01.T01:intron 40.0%
CACGAAGTTTCTCAACTTCT+CGG - Chr2:80669085-80669104 None:intergenic 40.0%
CAGAGAAAGGTCCTCTTTAT+GGG + Chr2:80670023-80670042 MsG0280011182.01.T01:CDS 40.0%
CATATGGAGTTAACGACTGA+AGG - Chr2:80669187-80669206 None:intergenic 40.0%
CTTTGCTTGTGCTTCTGTTT+AGG + Chr2:80669994-80670013 MsG0280011182.01.T01:intron 40.0%
GCAGTCAATGGAGAAAAACA+TGG + Chr2:80669049-80669068 MsG0280011182.01.T01:CDS 40.0%
GGAGAAAAACATGGTTTCCA+TGG + Chr2:80669058-80669077 MsG0280011182.01.T01:CDS 40.0%
GGGAGTTCATTAGTGATAAC+AGG + Chr2:80669561-80669580 MsG0280011182.01.T01:intron 40.0%
TACTTCGCTAACACAGCTAA+AGG - Chr2:80670145-80670164 None:intergenic 40.0%
TAGACAAGTTAGAGAAAGCG+TGG - Chr2:80669500-80669519 None:intergenic 40.0%
TAGCATGGATGGAAGACATT+GGG + Chr2:80669115-80669134 MsG0280011182.01.T01:CDS 40.0%
TGAACATGAGATGCATTCGA+GGG + Chr2:80668627-80668646 MsG0280011182.01.T01:CDS 40.0%
TGAAGTTGGAGTCTGATCTT+AGG + Chr2:80668668-80668687 MsG0280011182.01.T01:CDS 40.0%
! ACAGGAGGTTGATTGATGAT+CGG + Chr2:80668527-80668546 MsG0280011182.01.T01:CDS 40.0%
! AGACAAGTTAGAGAAAGCGT+GGG - Chr2:80669499-80669518 None:intergenic 40.0%
! CAAACAAGAACTTTCTGGGA+AGG + Chr2:80668756-80668775 MsG0280011182.01.T01:CDS 40.0%
! GTGTTTGTGCTTACCCTTTT+AGG + Chr2:80668311-80668330 MsG0280011182.01.T01:intron 40.0%
!! AAATTTTGGTAGTCCAGAGG+GGG + Chr2:80669867-80669886 MsG0280011182.01.T01:CDS 40.0%
!! CAAATTTTGGTAGTCCAGAG+GGG + Chr2:80669866-80669885 MsG0280011182.01.T01:CDS 40.0%
AAAGGTCCTCTTTATGGGGT+GGG + Chr2:80670028-80670047 MsG0280011182.01.T01:CDS 45.0%
AAGTGCAGCATGCTGAAATG+AGG + Chr2:80668488-80668507 MsG0280011182.01.T01:CDS 45.0%
ACATGGAGTTCATGGAACAG+AGG + Chr2:80669027-80669046 MsG0280011182.01.T01:CDS 45.0%
ACCTCATCCAGCATTGTTAG+AGG + Chr2:80668456-80668475 MsG0280011182.01.T01:CDS 45.0%
AGCATGGATGGAAGACATTG+GGG + Chr2:80669116-80669135 MsG0280011182.01.T01:CDS 45.0%
AGCTCTTCCTCTAACAATGC+TGG - Chr2:80668466-80668485 None:intergenic 45.0%
ATCCATCTGCATATGGAGGT+GGG - Chr2:80669897-80669916 None:intergenic 45.0%
ATCCCACAAGGTGTATACGT+AGG + Chr2:80669636-80669655 MsG0280011182.01.T01:intron 45.0%
ATCCCTACGTATACACCTTG+TGG - Chr2:80669642-80669661 None:intergenic 45.0%
CCATATCCATCTGCATATGG+AGG - Chr2:80669901-80669920 None:intergenic 45.0%
CCTCCATATGCAGATGGATA+TGG + Chr2:80669898-80669917 MsG0280011182.01.T01:CDS 45.0%
CTAGCATGGATGGAAGACAT+TGG + Chr2:80669114-80669133 MsG0280011182.01.T01:CDS 45.0%
CTGAACATGAGATGCATTCG+AGG + Chr2:80668626-80668645 MsG0280011182.01.T01:CDS 45.0%
GAAGGCAAACATGGAGTTCA+TGG + Chr2:80669019-80669038 MsG0280011182.01.T01:CDS 45.0%
GCAGAGAAAGGTCCTCTTTA+TGG + Chr2:80670022-80670041 MsG0280011182.01.T01:CDS 45.0%
TAGCTGTGTTAGCGAAGTAG+CGG + Chr2:80670146-80670165 MsG0280011182.01.T01:three_prime_UTR 45.0%
TATCCATCTGCATATGGAGG+TGG - Chr2:80669898-80669917 None:intergenic 45.0%
TCCCACAAGGTGTATACGTA+GGG + Chr2:80669637-80669656 MsG0280011182.01.T01:intron 45.0%
TCCCTACGTATACACCTTGT+GGG - Chr2:80669641-80669660 None:intergenic 45.0%
TCCTCTAACAATGCTGGATG+AGG - Chr2:80668460-80668479 None:intergenic 45.0%
TCTAACAATGCTGGATGAGG+TGG - Chr2:80668457-80668476 None:intergenic 45.0%
! ACTGCAGCAATGTTTTCTCC+AGG - Chr2:80670284-80670303 None:intergenic 45.0%
! TAGAGAAAGCGTGGGAGTTA+AGG - Chr2:80669491-80669510 None:intergenic 45.0%
! TTGGTGGCTCTCTATGAACA+CGG - Chr2:80668360-80668379 None:intergenic 45.0%
!! AATTTTGGTAGTCCAGAGGG+GGG + Chr2:80669868-80669887 MsG0280011182.01.T01:CDS 45.0%
!! CTTTTGACTGGCAGTGTTGA+GGG + Chr2:80669606-80669625 MsG0280011182.01.T01:intron 45.0%
!! TCTTTTGACTGGCAGTGTTG+AGG + Chr2:80669605-80669624 MsG0280011182.01.T01:intron 45.0%
!!! TTTATTTTTCAAATTATTAT+CGG + Chr2:80668225-80668244 MsG0280011182.01.T01:intron 5.0%
AACACAGCTAAAGGGATGGC+AGG - Chr2:80670136-80670155 None:intergenic 50.0%
ACCAAGAACTGATGCGTGCT+AGG + Chr2:80668863-80668882 MsG0280011182.01.T01:CDS 50.0%
ACCTAGCACGCATCAGTTCT+TGG - Chr2:80668867-80668886 None:intergenic 50.0%
ACTGATGCGTGCTAGGTTTG+TGG + Chr2:80668870-80668889 MsG0280011182.01.T01:intron 50.0%
ATTCAACGACGGTTTGAGCG+AGG - Chr2:80670082-80670101 None:intergenic 50.0%
CACCAATGAGTTCCCGAAGA+GGG + Chr2:80668374-80668393 MsG0280011182.01.T01:CDS 50.0%
CATGGAACAGAGGCAGTCAA+TGG + Chr2:80669037-80669056 MsG0280011182.01.T01:CDS 50.0%
CGCTAACACAGCTAAAGGGA+TGG - Chr2:80670140-80670159 None:intergenic 50.0%
CTTCCGATGGATACCCTCTT+CGG - Chr2:80668390-80668409 None:intergenic 50.0%
GAAAGGTCCTCTTTATGGGG+TGG + Chr2:80670027-80670046 MsG0280011182.01.T01:CDS 50.0%
GGAATATGCTGTCGTGGCAT+TGG - Chr2:80668436-80668455 None:intergenic 50.0%
GTTTAGGCTGCTGCAGAGAA+AGG + Chr2:80670010-80670029 MsG0280011182.01.T01:intron 50.0%
TACACGTGTCAGTGTCGTGT+TGG - Chr2:80668187-80668206 None:intergenic 50.0%
TACCCTCTTCGGGAACTCAT+TGG - Chr2:80668379-80668398 None:intergenic 50.0%
TGAGGTGGAATATGCTGTCG+TGG - Chr2:80668442-80668461 None:intergenic 50.0%
TGCAGCATGCTGAAATGAGG+AGG + Chr2:80668491-80668510 MsG0280011182.01.T01:CDS 50.0%
TGTCGTGTTGGATCCTGACA+CGG - Chr2:80668175-80668194 None:intergenic 50.0%
TTCCCACCTCCATATGCAGA+TGG + Chr2:80669892-80669911 MsG0280011182.01.T01:CDS 50.0%
TTCCGATGGATACCCTCTTC+GGG - Chr2:80668389-80668408 None:intergenic 50.0%
TTTCTCAACTTCTCGGGCCA+TGG - Chr2:80669078-80669097 None:intergenic 50.0%
! ATATGCTGTCGTGGCATTGG+TGG - Chr2:80668433-80668452 None:intergenic 50.0%
!! TTCCCGAAGAGGGTATCCAT+CGG + Chr2:80668384-80668403 MsG0280011182.01.T01:CDS 50.0%
ATGGAAGACGTGTCCGTGTC+AGG + Chr2:80668159-80668178 MsG0280011182.01.T01:intron 55.0%
CCACCAATGAGTTCCCGAAG+AGG + Chr2:80668373-80668392 MsG0280011182.01.T01:CDS 55.0%
CCTCTTCGGGAACTCATTGG+TGG - Chr2:80668376-80668395 None:intergenic 55.0%
CGAGCATAAGGACCTTCCGA+TGG - Chr2:80668403-80668422 None:intergenic 55.0%
GATGGAAGACATTGGGGAGC+TGG + Chr2:80669122-80669141 MsG0280011182.01.T01:CDS 55.0%
GCAGTACCCACCCCATAAAG+AGG - Chr2:80670037-80670056 None:intergenic 55.0%
GCATGCTGAAATGAGGAGGC+TGG + Chr2:80668495-80668514 MsG0280011182.01.T01:CDS 55.0%
TCGGAAGGTCCTTATGCTCG+CGG + Chr2:80668403-80668422 MsG0280011182.01.T01:CDS 55.0%
TGAAATGAGGAGGCTGGTGG+CGG + Chr2:80668501-80668520 MsG0280011182.01.T01:CDS 55.0%
TGCTGAAATGAGGAGGCTGG+TGG + Chr2:80668498-80668517 MsG0280011182.01.T01:CDS 55.0%
! ATGGGGTGGGTACTGCTTCT+AGG + Chr2:80670041-80670060 MsG0280011182.01.T01:CDS 55.0%
! TTGACTGGCAGTGTTGAGGG+TGG + Chr2:80669609-80669628 MsG0280011182.01.T01:intron 55.0%
!! CGAAGAGGGTATCCATCGGA+AGG + Chr2:80668388-80668407 MsG0280011182.01.T01:CDS 55.0%
!! GCTGAGCTTGCTAGCATGGA+TGG + Chr2:80669104-80669123 MsG0280011182.01.T01:CDS 55.0%
!! TCGTGCTGAGCTTGCTAGCA+TGG + Chr2:80669100-80669119 MsG0280011182.01.T01:CDS 55.0%
AGACCTTGCAGCTGCGAAGG+AGG + Chr2:80668564-80668583 MsG0280011182.01.T01:CDS 60.0%
CGGAAGGTCCTTATGCTCGC+GGG + Chr2:80668404-80668423 MsG0280011182.01.T01:CDS 60.0%
! ACTGGCAGTGTTGAGGGTGG+TGG + Chr2:80669612-80669631 MsG0280011182.01.T01:intron 60.0%
! GAGGGTGGTGGTATCCCACA+AGG + Chr2:80669624-80669643 MsG0280011182.01.T01:intron 60.0%
!! TGCTGTCGTGGCATTGGTGG+TGG - Chr2:80668430-80668449 None:intergenic 60.0%
GCGAGACCTTGCAGCTGCGA+AGG + Chr2:80668561-80668580 MsG0280011182.01.T01:CDS 65.0%
GCTCCTCCTTCGCAGCTGCA+AGG - Chr2:80668570-80668589 None:intergenic 65.0%
!! GGAGGCTGGTGGCGGATAAC+AGG + Chr2:80668509-80668528 MsG0280011182.01.T01:CDS 65.0%
!! GGCTGGTGGCGGATAACAGG+AGG + Chr2:80668512-80668531 MsG0280011182.01.T01:CDS 65.0%
GGAGGTGGGAAACCCCCCTC+TGG - Chr2:80669883-80669902 None:intergenic 70.0%
! GGTGGTGGCCCGCGAGCATA+AGG - Chr2:80668415-80668434 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 80667859 80670336 80667859 ID=MsG0280011182.01;Name=MsG0280011182.01
Chr2 mRNA 80667859 80670336 80667859 ID=MsG0280011182.01.T01;Parent=MsG0280011182.01;Name=MsG0280011182.01.T01;_AED=0.45;_eAED=0.45;_QI=46|1|1|1|0.75|0.6|5|237|283
Chr2 exon 80667859 80667894 80667859 ID=MsG0280011182.01.T01:exon:17777;Parent=MsG0280011182.01.T01
Chr2 exon 80668333 80668884 80668333 ID=MsG0280011182.01.T01:exon:17778;Parent=MsG0280011182.01.T01
Chr2 exon 80668998 80669143 80668998 ID=MsG0280011182.01.T01:exon:17779;Parent=MsG0280011182.01.T01
Chr2 exon 80669851 80669930 80669851 ID=MsG0280011182.01.T01:exon:17780;Parent=MsG0280011182.01.T01
Chr2 exon 80670016 80670336 80670016 ID=MsG0280011182.01.T01:exon:17781;Parent=MsG0280011182.01.T01
Chr2 five_prime_UTR 80667859 80667894 80667859 ID=MsG0280011182.01.T01:five_prime_utr;Parent=MsG0280011182.01.T01
Chr2 five_prime_UTR 80668333 80668342 80668333 ID=MsG0280011182.01.T01:five_prime_utr;Parent=MsG0280011182.01.T01
Chr2 CDS 80668343 80668884 80668343 ID=MsG0280011182.01.T01:cds;Parent=MsG0280011182.01.T01
Chr2 CDS 80668998 80669143 80668998 ID=MsG0280011182.01.T01:cds;Parent=MsG0280011182.01.T01
Chr2 CDS 80669851 80669930 80669851 ID=MsG0280011182.01.T01:cds;Parent=MsG0280011182.01.T01
Chr2 CDS 80670016 80670099 80670016 ID=MsG0280011182.01.T01:cds;Parent=MsG0280011182.01.T01
Chr2 three_prime_UTR 80670100 80670336 80670100 ID=MsG0280011182.01.T01:three_prime_utr;Parent=MsG0280011182.01.T01
Gene Sequence

>MsG0280011182.01.T01

ATGGGATCAAGACACCGTGTTCATAGAGAGCCACCAATGAGTTCCCGAAGAGGGTATCCATCGGAAGGTCCTTATGCTCGCGGGCCACCACCAATGCCACGACAGCATATTCCACCTCATCCAGCATTGTTAGAGGAAGAGCTTGAAGTGCAGCATGCTGAAATGAGGAGGCTGGTGGCGGATAACAGGAGGTTGATTGATGATCGGATGACGTTGCAGCGAGACCTTGCAGCTGCGAAGGAGGAGCTTCATCGTATGAATTTAGCGATTGGCGATATTCGTGCTGAACATGAGATGCATTCGAGGGAGCTTGTTGATAAAAATATGAAGTTGGAGTCTGATCTTAGGTCGACTGAGCCGTTGAAGAATGAAGTTATACAACTGCGAGCTGAAGTTCAAAAACTTAGTAGTATCAAACAAGAACTTTCTGGGAAGGTCCAGACACTTACGAAAGATGTTTCTAGGTTACAGTCTGATAATCAACAAATTCCTTCAATGAGATCTGAGATTGATGGTTTGCACCAAGAACTGATGCGTGCTAGAACTATGGTGGATTATGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAACATGGTTTCCATGGCCCGAGAAGTTGAGAAACTTCGTGCTGAGCTTGCTAGCATGGATGGAAGACATTGGGGAGCTGGTTTGCCTTATGGAACAAATTTTGGTAGTCCAGAGGGGGGTTTCCCACCTCCATATGCAGATGGATATGGTGTTCACATGGCTGCTGCAGAGAAAGGTCCTCTTTATGGGGTGGGTACTGCTTCTAGGAAAGCACACGAGAAGCCTCGCTCAAACCGTCGTTGA

Protein sequence

>MsG0280011182.01.T01

MGSRHRVHREPPMSSRRGYPSEGPYARGPPPMPRQHIPPHPALLEEELEVQHAEMRRLVADNRRLIDDRMTLQRDLAAAKEELHRMNLAIGDIRAEHEMHSRELVDKNMKLESDLRSTEPLKNEVIQLRAEVQKLSSIKQELSGKVQTLTKDVSRLQSDNQQIPSMRSEIDGLHQELMRARTMVDYEKKANMEFMEQRQSMEKNMVSMAREVEKLRAELASMDGRHWGAGLPYGTNFGSPEGGFPPPYADGYGVHMAAAEKGPLYGVGTASRKAHEKPRSNRR*