AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0992590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992590 MtrunA17_Chr6g0475281 93.220 118 7 1 1 118 57 173 6.69e-76 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992590 AT5G51720.1 75.610 82 18 1 37 118 28 107 5.61e-42 134

Find 36 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCACTCTTCCTTATATC+TGG 0.212325 6_4:+61801574 None:intergenic
ATTTCTTATTTATTGAATTA+AGG 0.257072 6_4:-61800196 Msa0992590:three_prime_UTR
GAACTTTGCAATAAGGTAGA+TGG 0.326744 6_4:+61801819 None:intergenic
AAAGGAACTAGTGTTGAAAT+TGG 0.341338 6_4:+61801666 None:intergenic
AATTTCAACACTAGTTCCTT+TGG 0.378332 6_4:-61801664 Msa0992590:CDS
ACTGAACCATACCTGCAATA+AGG 0.381259 6_4:+61801502 None:intergenic
AGTGTGCTATCCACAAGTTC+AGG 0.386917 6_4:-61801872 None:intergenic
TGGCTTTGTTGTGCTTTACA+TGG 0.398604 6_4:+61800389 None:intergenic
TCTCACTTAAACATGGCTTT+TGG 0.402198 6_4:+61801710 None:intergenic
TATAAGGAAGAGTGAAGAAA+AGG 0.402584 6_4:-61801569 Msa0992590:CDS
AACACTAGTTCCTTTGGTAT+TGG 0.404546 6_4:-61801658 Msa0992590:CDS
AGGCTGTTACACCTTATTGC+AGG 0.425079 6_4:-61801513 Msa0992590:intron
GTAGCATAAATCCAGATATA+AGG 0.427754 6_4:-61801585 Msa0992590:CDS
TGATACAGATGCTGGAGATC+AGG 0.452783 6_4:-61800436 Msa0992590:intron
CAGACATAACATTTCAATGT+TGG 0.459795 6_4:-61800266 Msa0992590:three_prime_UTR
GGCACAAAACTACACCAACT+TGG 0.466620 6_4:+61801731 None:intergenic
GTGGTGGTGAAAGCAGAGAC+AGG 0.472527 6_4:-61801616 Msa0992590:CDS
AAGCCACTGGAGATAATGTT+GGG 0.514803 6_4:-61800372 Msa0992590:CDS
GCAATAAGGTGTAACAGCCT+TGG 0.525200 6_4:+61801516 None:intergenic
AAAGCCACTGGAGATAATGT+TGG 0.533290 6_4:-61800373 Msa0992590:CDS
GTGTGCTATCCACAAGTTCA+GGG 0.549346 6_4:-61801871 None:intergenic
CTAGTTCCTTTGGTATTGGT+AGG 0.550489 6_4:-61801654 Msa0992590:CDS
GAAAGCAAGAAGTGTGGTGG+TGG 0.552869 6_4:-61801632 Msa0992590:CDS
TACATGTGTCCCTGAACTTG+TGG 0.559183 6_4:+61801862 None:intergenic
GGAACCTTTCCTCTGTGTGA+TGG 0.562888 6_4:-61800415 Msa0992590:CDS
GTAAAGCACAACAAAGCCAC+TGG 0.579483 6_4:-61800385 Msa0992590:CDS
TGCTTTCCTACCAATACCAA+AGG 0.582424 6_4:+61801648 None:intergenic
TGTGCTCAGTGAAGTCTCCA+AGG 0.596449 6_4:-61801533 Msa0992590:CDS
TGGTGGTGAAAGCAGAGACA+GGG 0.597940 6_4:-61801615 Msa0992590:CDS
GCTTCCATCACACAGAGGAA+AGG 0.616730 6_4:+61800411 None:intergenic
AGGCCCAACATTATCTCCAG+TGG 0.629442 6_4:+61800369 None:intergenic
TGGTAGGAAAGCAAGAAGTG+TGG 0.633825 6_4:-61801638 Msa0992590:CDS
GGTGGTGAAAGCAGAGACAG+GGG 0.666105 6_4:-61801614 Msa0992590:CDS
TAGGAAAGCAAGAAGTGTGG+TGG 0.698142 6_4:-61801635 Msa0992590:CDS
GTGGTGAAAGCAGAGACAGG+GGG 0.706898 6_4:-61801613 Msa0992590:CDS
ACATGGCTTCCATCACACAG+AGG 0.761842 6_4:+61800406 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTTCATTTATTTA+TGG - chr6_4:61800558-61800577 Msa0992590:intron 10.0%
!!! ATTTCTTATTTATTGAATTA+AGG - chr6_4:61801838-61801857 Msa0992590:five_prime_UTR 10.0%
!!! TTATGTTTTTCATTTATTTA+TGG - chr6_4:61800558-61800577 Msa0992590:intron 10.0%
!!! ATTTCTTATTTATTGAATTA+AGG - chr6_4:61801838-61801857 Msa0992590:five_prime_UTR 10.0%
!! CAATAATCAAATTTCAATAA+TGG + chr6_4:61800649-61800668 None:intergenic 15.0%
!! CATTATTGAAATTTGATTAT+TGG - chr6_4:61800647-61800666 Msa0992590:intron 15.0%
!! CAATAATCAAATTTCAATAA+TGG + chr6_4:61800649-61800668 None:intergenic 15.0%
!! CATTATTGAAATTTGATTAT+TGG - chr6_4:61800647-61800666 Msa0992590:intron 15.0%
!!! TGATTATTGGTTAATTTATG+TGG - chr6_4:61800660-61800679 Msa0992590:intron 20.0%
!! CTAAATTCAATAAACTATGT+AGG + chr6_4:61800707-61800726 None:intergenic 20.0%
!! TATCACAAATTAACAATGTT+TGG - chr6_4:61801050-61801069 Msa0992590:intron 20.0%
!! TATGCTTCTATAATATATGT+TGG - chr6_4:61801373-61801392 Msa0992590:intron 20.0%
!!! AGAAAGATTAAGATTTGTTT+TGG + chr6_4:61801564-61801583 None:intergenic 20.0%
!! AAAACAAATCTTAATCTTTC+TGG - chr6_4:61801563-61801582 Msa0992590:CDS 20.0%
!!! GAAAAAAAATCAATTTTCAG+AGG - chr6_4:61801733-61801752 Msa0992590:CDS 20.0%
!!! TGATTATTGGTTAATTTATG+TGG - chr6_4:61800660-61800679 Msa0992590:intron 20.0%
!! CTAAATTCAATAAACTATGT+AGG + chr6_4:61800707-61800726 None:intergenic 20.0%
!! TATCACAAATTAACAATGTT+TGG - chr6_4:61801050-61801069 Msa0992590:intron 20.0%
!! TATGCTTCTATAATATATGT+TGG - chr6_4:61801373-61801392 Msa0992590:intron 20.0%
!!! AGAAAGATTAAGATTTGTTT+TGG + chr6_4:61801564-61801583 None:intergenic 20.0%
!! AAAACAAATCTTAATCTTTC+TGG - chr6_4:61801563-61801582 Msa0992590:CDS 20.0%
!!! GAAAAAAAATCAATTTTCAG+AGG - chr6_4:61801733-61801752 Msa0992590:CDS 20.0%
!!! AAGTTTTGAACTTTGCAATA+AGG + chr6_4:61800225-61800244 None:intergenic 25.0%
!! TTTTGTGTTTATCTTCTCTT+TGG + chr6_4:61800254-61800273 None:intergenic 25.0%
! CACAAAAAATTCATACTCAA+TGG - chr6_4:61800267-61800286 Msa0992590:three_prime_UTR 25.0%
!!! TTTTTTCTCTCACTTAAACA+TGG + chr6_4:61800334-61800353 None:intergenic 25.0%
! ATGTTTAAGTGAGAGAAAAA+AGG - chr6_4:61800333-61800352 Msa0992590:exon 25.0%
! TGTTTAAGTGAGAGAAAAAA+GGG - chr6_4:61800334-61800353 Msa0992590:exon 25.0%
! TGATATTAGATGAATGATTC+TGG - chr6_4:61800897-61800916 Msa0992590:intron 25.0%
!! GCATTTTGTATATGATAATC+TGG - chr6_4:61801093-61801112 Msa0992590:intron 25.0%
!! ATGATAATCTGGAATAATGT+CGG - chr6_4:61801104-61801123 Msa0992590:intron 25.0%
! CCATTAATAAGTTCTTTATG+TGG + chr6_4:61801338-61801357 None:intergenic 25.0%
! CCACATAAAGAACTTATTAA+TGG - chr6_4:61801335-61801354 Msa0992590:intron 25.0%
!!! AATCTTAATCTTTCTGGTTT+TGG - chr6_4:61801569-61801588 Msa0992590:CDS 25.0%
!!! ATCTTAATCTTTCTGGTTTT+GGG - chr6_4:61801570-61801589 Msa0992590:CDS 25.0%
!!! CTCTATTTTTTCAAAAGAAG+AGG + chr6_4:61801688-61801707 None:intergenic 25.0%
!!! AAGTTTTGAACTTTGCAATA+AGG + chr6_4:61800225-61800244 None:intergenic 25.0%
!! TTTTGTGTTTATCTTCTCTT+TGG + chr6_4:61800254-61800273 None:intergenic 25.0%
! CACAAAAAATTCATACTCAA+TGG - chr6_4:61800267-61800286 Msa0992590:three_prime_UTR 25.0%
!!! TTTTTTCTCTCACTTAAACA+TGG + chr6_4:61800334-61800353 None:intergenic 25.0%
! ATGTTTAAGTGAGAGAAAAA+AGG - chr6_4:61800333-61800352 Msa0992590:exon 25.0%
! TGTTTAAGTGAGAGAAAAAA+GGG - chr6_4:61800334-61800353 Msa0992590:exon 25.0%
! TGATATTAGATGAATGATTC+TGG - chr6_4:61800897-61800916 Msa0992590:intron 25.0%
!! GCATTTTGTATATGATAATC+TGG - chr6_4:61801093-61801112 Msa0992590:intron 25.0%
!! ATGATAATCTGGAATAATGT+CGG - chr6_4:61801104-61801123 Msa0992590:intron 25.0%
! CCATTAATAAGTTCTTTATG+TGG + chr6_4:61801338-61801357 None:intergenic 25.0%
! CCACATAAAGAACTTATTAA+TGG - chr6_4:61801335-61801354 Msa0992590:intron 25.0%
!!! AATCTTAATCTTTCTGGTTT+TGG - chr6_4:61801569-61801588 Msa0992590:CDS 25.0%
!!! ATCTTAATCTTTCTGGTTTT+GGG - chr6_4:61801570-61801589 Msa0992590:CDS 25.0%
!!! CTCTATTTTTTCAAAAGAAG+AGG + chr6_4:61801688-61801707 None:intergenic 25.0%
GAGAGAAAAAAGGGAATTAT+AGG - chr6_4:61800343-61800362 Msa0992590:exon 30.0%
! AAAGGAACTAGTGTTGAAAT+TGG + chr6_4:61800371-61800390 None:intergenic 30.0%
AATTTCAACACTAGTTCCTT+TGG - chr6_4:61800370-61800389 Msa0992590:CDS 30.0%
GTAGCATAAATCCAGATATA+AGG - chr6_4:61800449-61800468 Msa0992590:intron 30.0%
TATAAGGAAGAGTGAAGAAA+AGG - chr6_4:61800465-61800484 Msa0992590:intron 30.0%
TATGGTTAAGTGTATCATTG+TGG - chr6_4:61800576-61800595 Msa0992590:intron 30.0%
TGATTGATTACATCTGTTTC+TGG - chr6_4:61800975-61800994 Msa0992590:intron 30.0%
! TGATAATCTGGAATAATGTC+GGG - chr6_4:61801105-61801124 Msa0992590:intron 30.0%
GAATCTCTTGTTGAGAAATT+AGG - chr6_4:61801147-61801166 Msa0992590:intron 30.0%
TGAGAAATTAGGATGTTGAT+AGG - chr6_4:61801158-61801177 Msa0992590:intron 30.0%
TTATGTGGAATCTACTAACT+GGG + chr6_4:61801323-61801342 None:intergenic 30.0%
TTTATGTGGAATCTACTAAC+TGG + chr6_4:61801324-61801343 None:intergenic 30.0%
GCTTCTATAATATATGTTGG+TGG - chr6_4:61801376-61801395 Msa0992590:intron 30.0%
CAGACATAACATTTCAATGT+TGG - chr6_4:61801768-61801787 Msa0992590:exon 30.0%
GAGAGAAAAAAGGGAATTAT+AGG - chr6_4:61800343-61800362 Msa0992590:exon 30.0%
! AAAGGAACTAGTGTTGAAAT+TGG + chr6_4:61800371-61800390 None:intergenic 30.0%
AATTTCAACACTAGTTCCTT+TGG - chr6_4:61800370-61800389 Msa0992590:CDS 30.0%
GTAGCATAAATCCAGATATA+AGG - chr6_4:61800449-61800468 Msa0992590:intron 30.0%
TATAAGGAAGAGTGAAGAAA+AGG - chr6_4:61800465-61800484 Msa0992590:intron 30.0%
TATGGTTAAGTGTATCATTG+TGG - chr6_4:61800576-61800595 Msa0992590:intron 30.0%
TGATTGATTACATCTGTTTC+TGG - chr6_4:61800975-61800994 Msa0992590:intron 30.0%
! TGATAATCTGGAATAATGTC+GGG - chr6_4:61801105-61801124 Msa0992590:intron 30.0%
GAATCTCTTGTTGAGAAATT+AGG - chr6_4:61801147-61801166 Msa0992590:intron 30.0%
TGAGAAATTAGGATGTTGAT+AGG - chr6_4:61801158-61801177 Msa0992590:intron 30.0%
TTATGTGGAATCTACTAACT+GGG + chr6_4:61801323-61801342 None:intergenic 30.0%
TTTATGTGGAATCTACTAAC+TGG + chr6_4:61801324-61801343 None:intergenic 30.0%
GCTTCTATAATATATGTTGG+TGG - chr6_4:61801376-61801395 Msa0992590:intron 30.0%
CAGACATAACATTTCAATGT+TGG - chr6_4:61801768-61801787 Msa0992590:exon 30.0%
GAACTTTGCAATAAGGTAGA+TGG + chr6_4:61800218-61800237 None:intergenic 35.0%
! TCTCACTTAAACATGGCTTT+TGG + chr6_4:61800327-61800346 None:intergenic 35.0%
AACACTAGTTCCTTTGGTAT+TGG - chr6_4:61800376-61800395 Msa0992590:CDS 35.0%
TCTTCACTCTTCCTTATATC+TGG + chr6_4:61800463-61800482 None:intergenic 35.0%
CTCTCAAATAGTTTCACAAG+TGG - chr6_4:61800770-61800789 Msa0992590:intron 35.0%
!! ATTACATCTGTTTCTGGAAG+TGG - chr6_4:61800981-61801000 Msa0992590:intron 35.0%
! GATAATCTGGAATAATGTCG+GGG - chr6_4:61801106-61801125 Msa0992590:intron 35.0%
! ACATAAGCAGGATTTTTACG+TGG + chr6_4:61801186-61801205 None:intergenic 35.0%
TTTGTCGAATCTCTATAACG+TGG - chr6_4:61801280-61801299 Msa0992590:intron 35.0%
GAACTTTGCAATAAGGTAGA+TGG + chr6_4:61800218-61800237 None:intergenic 35.0%
! TCTCACTTAAACATGGCTTT+TGG + chr6_4:61800327-61800346 None:intergenic 35.0%
AACACTAGTTCCTTTGGTAT+TGG - chr6_4:61800376-61800395 Msa0992590:CDS 35.0%
TCTTCACTCTTCCTTATATC+TGG + chr6_4:61800463-61800482 None:intergenic 35.0%
CTCTCAAATAGTTTCACAAG+TGG - chr6_4:61800770-61800789 Msa0992590:intron 35.0%
!! ATTACATCTGTTTCTGGAAG+TGG - chr6_4:61800981-61801000 Msa0992590:intron 35.0%
! GATAATCTGGAATAATGTCG+GGG - chr6_4:61801106-61801125 Msa0992590:intron 35.0%
! ACATAAGCAGGATTTTTACG+TGG + chr6_4:61801186-61801205 None:intergenic 35.0%
TTTGTCGAATCTCTATAACG+TGG - chr6_4:61801280-61801299 Msa0992590:intron 35.0%
!! GCATCTGTTTTAAGCCAAGT+TGG - chr6_4:61800289-61800308 Msa0992590:three_prime_UTR 40.0%
!! CTAGTTCCTTTGGTATTGGT+AGG - chr6_4:61800380-61800399 Msa0992590:CDS 40.0%
TGCTTTCCTACCAATACCAA+AGG + chr6_4:61800389-61800408 None:intergenic 40.0%
GTTACACCTTATTGCAGGTA+TGG - chr6_4:61800526-61800545 Msa0992590:intron 40.0%
ACTGAACCATACCTGCAATA+AGG + chr6_4:61800535-61800554 None:intergenic 40.0%
TAACGAGGCTTAACATAAGC+AGG + chr6_4:61801198-61801217 None:intergenic 40.0%
TAAGCCTCGTTATACATTGC+CGG - chr6_4:61801206-61801225 Msa0992590:intron 40.0%
! ACAACCCTCTCCTTTTACTT+GGG + chr6_4:61801233-61801252 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+AGG - chr6_4:61801236-61801255 Msa0992590:intron 40.0%
!! AAGTTTTACGTTGACTGTCG+AGG + chr6_4:61801262-61801281 None:intergenic 40.0%
TGGAATCTACTAACTGGGAT+CGG + chr6_4:61801318-61801337 None:intergenic 40.0%
!! TGGCTTTGTTGTGCTTTACA+TGG + chr6_4:61801648-61801667 None:intergenic 40.0%
AAAGCCACTGGAGATAATGT+TGG - chr6_4:61801661-61801680 Msa0992590:CDS 40.0%
AAGCCACTGGAGATAATGTT+GGG - chr6_4:61801662-61801681 Msa0992590:CDS 40.0%
!! GCATCTGTTTTAAGCCAAGT+TGG - chr6_4:61800289-61800308 Msa0992590:three_prime_UTR 40.0%
!! CTAGTTCCTTTGGTATTGGT+AGG - chr6_4:61800380-61800399 Msa0992590:CDS 40.0%
TGCTTTCCTACCAATACCAA+AGG + chr6_4:61800389-61800408 None:intergenic 40.0%
GTTACACCTTATTGCAGGTA+TGG - chr6_4:61800526-61800545 Msa0992590:intron 40.0%
ACTGAACCATACCTGCAATA+AGG + chr6_4:61800535-61800554 None:intergenic 40.0%
TAACGAGGCTTAACATAAGC+AGG + chr6_4:61801198-61801217 None:intergenic 40.0%
TAAGCCTCGTTATACATTGC+CGG - chr6_4:61801206-61801225 Msa0992590:intron 40.0%
! ACAACCCTCTCCTTTTACTT+GGG + chr6_4:61801233-61801252 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+AGG - chr6_4:61801236-61801255 Msa0992590:intron 40.0%
!! AAGTTTTACGTTGACTGTCG+AGG + chr6_4:61801262-61801281 None:intergenic 40.0%
TGGAATCTACTAACTGGGAT+CGG + chr6_4:61801318-61801337 None:intergenic 40.0%
!! TGGCTTTGTTGTGCTTTACA+TGG + chr6_4:61801648-61801667 None:intergenic 40.0%
AAAGCCACTGGAGATAATGT+TGG - chr6_4:61801661-61801680 Msa0992590:CDS 40.0%
AAGCCACTGGAGATAATGTT+GGG - chr6_4:61801662-61801681 Msa0992590:CDS 40.0%
TACATGTGTCCCTGAACTTG+TGG + chr6_4:61800175-61800194 None:intergenic 45.0%
GGCACAAAACTACACCAACT+TGG + chr6_4:61800306-61800325 None:intergenic 45.0%
TGGTAGGAAAGCAAGAAGTG+TGG - chr6_4:61800396-61800415 Msa0992590:CDS 45.0%
! TAGGAAAGCAAGAAGTGTGG+TGG - chr6_4:61800399-61800418 Msa0992590:CDS 45.0%
GCAATAAGGTGTAACAGCCT+TGG + chr6_4:61800521-61800540 None:intergenic 45.0%
AGGCTGTTACACCTTATTGC+AGG - chr6_4:61800521-61800540 Msa0992590:intron 45.0%
! CACAACCCTCTCCTTTTACT+TGG + chr6_4:61801234-61801253 None:intergenic 45.0%
TGATACAGATGCTGGAGATC+AGG - chr6_4:61801598-61801617 Msa0992590:CDS 45.0%
GTAAAGCACAACAAAGCCAC+TGG - chr6_4:61801649-61801668 Msa0992590:CDS 45.0%
TACATGTGTCCCTGAACTTG+TGG + chr6_4:61800175-61800194 None:intergenic 45.0%
GGCACAAAACTACACCAACT+TGG + chr6_4:61800306-61800325 None:intergenic 45.0%
TGGTAGGAAAGCAAGAAGTG+TGG - chr6_4:61800396-61800415 Msa0992590:CDS 45.0%
! TAGGAAAGCAAGAAGTGTGG+TGG - chr6_4:61800399-61800418 Msa0992590:CDS 45.0%
GCAATAAGGTGTAACAGCCT+TGG + chr6_4:61800521-61800540 None:intergenic 45.0%
AGGCTGTTACACCTTATTGC+AGG - chr6_4:61800521-61800540 Msa0992590:intron 45.0%
! CACAACCCTCTCCTTTTACT+TGG + chr6_4:61801234-61801253 None:intergenic 45.0%
TGATACAGATGCTGGAGATC+AGG - chr6_4:61801598-61801617 Msa0992590:CDS 45.0%
GTAAAGCACAACAAAGCCAC+TGG - chr6_4:61801649-61801668 Msa0992590:CDS 45.0%
! GAAAGCAAGAAGTGTGGTGG+TGG - chr6_4:61800402-61800421 Msa0992590:CDS 50.0%
! TGGTGGTGAAAGCAGAGACA+GGG - chr6_4:61800419-61800438 Msa0992590:CDS 50.0%
TGTGCTCAGTGAAGTCTCCA+AGG - chr6_4:61800501-61800520 Msa0992590:intron 50.0%
CATTGCCGGTCCCAAGTAAA+AGG - chr6_4:61801220-61801239 Msa0992590:intron 50.0%
! CCTCTCCTTTTACTTGGGAC+CGG + chr6_4:61801228-61801247 None:intergenic 50.0%
CGGTCCCAAGTAAAAGGAGA+GGG - chr6_4:61801226-61801245 Msa0992590:intron 50.0%
GGGTGCTTTGATACAGATGC+TGG - chr6_4:61801590-61801609 Msa0992590:CDS 50.0%
GGAACCTTTCCTCTGTGTGA+TGG - chr6_4:61801619-61801638 Msa0992590:CDS 50.0%
GCTTCCATCACACAGAGGAA+AGG + chr6_4:61801626-61801645 None:intergenic 50.0%
ACATGGCTTCCATCACACAG+AGG + chr6_4:61801631-61801650 None:intergenic 50.0%
AGGCCCAACATTATCTCCAG+TGG + chr6_4:61801668-61801687 None:intergenic 50.0%
! GAAAGCAAGAAGTGTGGTGG+TGG - chr6_4:61800402-61800421 Msa0992590:CDS 50.0%
! TGGTGGTGAAAGCAGAGACA+GGG - chr6_4:61800419-61800438 Msa0992590:CDS 50.0%
TGTGCTCAGTGAAGTCTCCA+AGG - chr6_4:61800501-61800520 Msa0992590:intron 50.0%
CATTGCCGGTCCCAAGTAAA+AGG - chr6_4:61801220-61801239 Msa0992590:intron 50.0%
! CCTCTCCTTTTACTTGGGAC+CGG + chr6_4:61801228-61801247 None:intergenic 50.0%
CGGTCCCAAGTAAAAGGAGA+GGG - chr6_4:61801226-61801245 Msa0992590:intron 50.0%
GGGTGCTTTGATACAGATGC+TGG - chr6_4:61801590-61801609 Msa0992590:CDS 50.0%
GGAACCTTTCCTCTGTGTGA+TGG - chr6_4:61801619-61801638 Msa0992590:CDS 50.0%
GCTTCCATCACACAGAGGAA+AGG + chr6_4:61801626-61801645 None:intergenic 50.0%
ACATGGCTTCCATCACACAG+AGG + chr6_4:61801631-61801650 None:intergenic 50.0%
AGGCCCAACATTATCTCCAG+TGG + chr6_4:61801668-61801687 None:intergenic 50.0%
! GTGGTGGTGAAAGCAGAGAC+AGG - chr6_4:61800418-61800437 Msa0992590:CDS 55.0%
GGTGGTGAAAGCAGAGACAG+GGG - chr6_4:61800420-61800439 Msa0992590:CDS 55.0%
GTGGTGAAAGCAGAGACAGG+GGG - chr6_4:61800421-61800440 Msa0992590:CDS 55.0%
! AAAGCAGAGACAGGGGGTGT+GGG - chr6_4:61800427-61800446 Msa0992590:CDS 55.0%
GGGACCGGCAATGTATAACG+AGG + chr6_4:61801213-61801232 None:intergenic 55.0%
CCGGTCCCAAGTAAAAGGAG+AGG - chr6_4:61801225-61801244 Msa0992590:intron 55.0%
! GTGGTGGTGAAAGCAGAGAC+AGG - chr6_4:61800418-61800437 Msa0992590:CDS 55.0%
GGTGGTGAAAGCAGAGACAG+GGG - chr6_4:61800420-61800439 Msa0992590:CDS 55.0%
GTGGTGAAAGCAGAGACAGG+GGG - chr6_4:61800421-61800440 Msa0992590:CDS 55.0%
! AAAGCAGAGACAGGGGGTGT+GGG - chr6_4:61800427-61800446 Msa0992590:CDS 55.0%
GGGACCGGCAATGTATAACG+AGG + chr6_4:61801213-61801232 None:intergenic 55.0%
CCGGTCCCAAGTAAAAGGAG+AGG - chr6_4:61801225-61801244 Msa0992590:intron 55.0%
GAAAGCAGAGACAGGGGGTG+TGG - chr6_4:61800426-61800445 Msa0992590:CDS 60.0%
GAAAGCAGAGACAGGGGGTG+TGG - chr6_4:61800426-61800445 Msa0992590:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 61800167 61801889 61800167 ID=Msa0992590;Name=Msa0992590
chr6_4 mRNA 61800167 61801889 61800167 ID=Msa0992590-mRNA-1;Parent=Msa0992590;Name=Msa0992590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=119|1|1|1|1|1|2|184|118
chr6_4 exon 61800167 61800450 61800167 ID=Msa0992590-mRNA-1:exon:11950;Parent=Msa0992590-mRNA-1
chr6_4 exon 61801514 61801889 61801514 ID=Msa0992590-mRNA-1:exon:11949;Parent=Msa0992590-mRNA-1
chr6_4 five_prime_UTR 61801771 61801889 61801771 ID=Msa0992590-mRNA-1:five_prime_utr;Parent=Msa0992590-mRNA-1
chr6_4 CDS 61801514 61801770 61801514 ID=Msa0992590-mRNA-1:cds;Parent=Msa0992590-mRNA-1
chr6_4 CDS 61800351 61800450 61800351 ID=Msa0992590-mRNA-1:cds;Parent=Msa0992590-mRNA-1
chr6_4 three_prime_UTR 61800167 61800350 61800167 ID=Msa0992590-mRNA-1:three_prime_utr;Parent=Msa0992590-mRNA-1
Gene Sequence

>Msa0992590

ATGGCATCTGTTTTAAGCCAAGTTGGTGTAGTTTTGTGCCAAAAGCCATGTTTAAGTGAGAGAAAAAAGGGAATTATAGGTACCAATTTCAACACTAGTTCCTTTGGTATTGGTAGGAAAGCAAGAAGTGTGGTGGTGGTGAAAGCAGAGACAGGGGGTGTGGGTAGCATAAATCCAGATATAAGGAAGAGTGAAGAAAAGGTTGTTGATGCTGTTGTGCTCAGTGAAGTCTCCAAGGCTGTTACACCTTATTGCAGATGCTGGAGATCAGGAACCTTTCCTCTGTGTGATGGAAGCCATGTAAAGCACAACAAAGCCACTGGAGATAATGTTGGGCCTCTTCTTTTGAAAAAATAG

Protein sequence

>Msa0992590

MASVLSQVGVVLCQKPCLSERKKGIIGTNFNTSSFGIGRKARSVVVVKAETGGVGSINPDIRKSEEKVVDAVVLSEVSKAVTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK*