AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333160 MtrunA17_Chr2g0316251 97.868 938 20 0 1 938 1 938 0.0 1903
Msa0333160 MtrunA17_Chr1g0205451 43.779 217 112 6 726 938 573 783 4.79e-47 183
Msa0333160 MtrunA17_Chr1g0185491 37.566 189 118 0 726 914 776 964 1.38e-38 156
Msa0333160 MtrunA17_Chr7g0270101 36.667 180 105 3 761 938 383 555 1.25e-31 133
Msa0333160 MtrunA17_Chr5g0430361 33.962 265 156 9 685 938 571 827 2.06e-31 133
Msa0333160 MtrunA17_Chr5g0407211 35.176 199 105 6 762 938 3 199 1.02e-26 114
Msa0333160 MtrunA17_Chr5g0407251 35.176 199 105 6 762 938 3 199 1.36e-26 114
Msa0333160 MtrunA17_Chr3g0105291 32.584 178 117 3 762 938 603 778 1.96e-26 117
Msa0333160 MtrunA17_Chr3g0134811 29.310 232 108 5 761 938 338 567 1.34e-24 110
Msa0333160 MtrunA17_Chr3g0134821 36.275 204 117 5 741 938 404 600 2.64e-24 109
Msa0333160 MtrunA17_Chr7g0259981 55.357 56 25 0 861 916 8 63 7.35e-18 85.9
Msa0333160 MtrunA17_Chr1g0182481 35.965 114 60 4 797 909 495 596 6.05e-16 82.8
Msa0333160 MtrunA17_Chr2g0320451 35.398 113 60 3 798 909 500 600 4.97e-14 76.6
Msa0333160 MtrunA17_Chr7g0265211 35.965 114 58 4 798 909 531 631 7.80e-14 76.3
Msa0333160 MtrunA17_Chr3g0134851 34.307 137 65 4 788 904 112 243 1.80e-13 73.9
Msa0333160 MtrunA17_Chr4g0027391 39.759 83 36 2 850 918 387 469 2.58e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333160 AT3G14980.4 43.605 344 174 4 595 938 472 795 8.22e-82 285
Msa0333160 AT3G14980.4 32.020 406 227 10 1 400 7 369 1.18e-43 172
Msa0333160 AT3G14980.5 43.605 344 174 4 595 938 427 750 2.03e-81 286
Msa0333160 AT3G14980.5 34.766 256 160 5 147 400 74 324 3.59e-36 149
Msa0333160 AT3G14980.3 43.605 344 174 4 595 938 472 795 2.13e-81 285
Msa0333160 AT3G14980.3 32.020 406 227 10 1 400 7 369 1.83e-43 171
Msa0333160 AT3G14980.6 43.605 344 174 4 595 938 472 795 3.40e-81 286
Msa0333160 AT3G14980.6 32.426 404 228 10 1 400 7 369 2.92e-43 171
Msa0333160 AT3G14980.1 43.605 344 174 4 595 938 472 795 3.40e-81 286
Msa0333160 AT3G14980.1 32.426 404 228 10 1 400 7 369 2.92e-43 171
Msa0333160 AT3G14980.2 43.605 344 174 4 595 938 472 795 3.40e-81 286
Msa0333160 AT3G14980.2 32.426 404 228 10 1 400 7 369 2.92e-43 171
Msa0333160 AT4G14920.3 38.565 223 128 2 716 938 541 754 4.88e-44 174
Msa0333160 AT4G14920.2 38.565 223 128 2 716 938 541 754 4.92e-44 174
Msa0333160 AT4G14920.1 38.565 223 128 2 716 938 541 754 4.92e-44 174
Msa0333160 AT1G05380.3 43.548 186 105 0 733 918 491 676 1.08e-41 166
Msa0333160 AT1G05380.1 43.548 186 105 0 733 918 491 676 1.08e-41 166
Msa0333160 AT1G05380.2 43.548 186 105 0 733 918 491 676 1.08e-41 166
Msa0333160 AT5G36740.5 35.537 242 144 4 701 938 489 722 2.45e-40 162
Msa0333160 AT5G36740.1 35.537 242 144 4 701 938 489 722 2.45e-40 162
Msa0333160 AT5G36670.4 35.537 242 144 4 701 938 489 722 2.67e-40 162
Msa0333160 AT5G36670.5 35.537 242 144 4 701 938 489 722 2.67e-40 162
Msa0333160 AT5G36740.4 35.537 242 144 4 701 938 336 569 2.72e-40 161
Msa0333160 AT5G36670.2 35.537 242 144 4 701 938 489 722 2.76e-40 161
Msa0333160 AT5G36740.2 35.537 242 144 4 701 938 489 722 2.76e-40 161
Msa0333160 AT5G36740.3 35.537 242 144 4 701 938 489 722 2.76e-40 161
Msa0333160 AT5G36670.1 35.537 242 144 4 701 938 489 722 3.15e-40 161
Msa0333160 AT5G36670.3 35.537 242 144 4 701 938 336 569 3.47e-40 161
Msa0333160 AT5G58610.4 35.912 181 113 2 760 938 366 545 1.16e-32 137
Msa0333160 AT5G58610.10 35.912 181 113 2 760 938 597 776 2.89e-32 135
Msa0333160 AT5G58610.3 35.912 181 113 2 760 938 597 776 2.89e-32 136
Msa0333160 AT5G58610.6 35.912 181 113 2 760 938 588 767 3.03e-32 136
Msa0333160 AT5G58610.5 35.912 181 113 2 760 938 588 767 3.12e-32 136
Msa0333160 AT5G58610.11 35.912 181 113 2 760 938 588 767 3.26e-32 135
Msa0333160 AT5G58610.1 35.912 181 113 2 760 938 588 767 3.35e-32 135
Msa0333160 AT5G58610.7 35.912 181 113 2 760 938 588 767 3.54e-32 135
Msa0333160 AT5G58610.8 35.912 181 113 2 760 938 597 776 3.62e-32 135
Msa0333160 AT5G58610.2 35.912 181 113 2 760 938 597 776 3.62e-32 135
Msa0333160 AT5G58610.9 35.912 181 113 2 760 938 588 767 3.76e-32 135
Msa0333160 AT2G37520.1 38.053 113 57 3 798 909 410 510 5.94e-18 89.7
Msa0333160 AT3G53680.1 33.929 112 64 1 798 909 427 528 1.27e-16 85.5
Msa0333160 AT3G53680.2 33.929 112 64 1 798 909 429 530 1.40e-16 85.5
Msa0333160 AT2G36720.1 33.628 113 62 3 798 909 557 657 2.26e-13 75.1
Msa0333160 AT2G36720.2 33.628 113 62 3 798 909 557 657 2.26e-13 75.1
Msa0333160 AT2G27980.1 32.824 131 70 4 798 927 637 750 8.66e-13 73.2
Msa0333160 AT5G22760.2 40.000 80 43 2 844 921 393 469 2.28e-11 68.6
Msa0333160 AT5G22760.1 40.000 80 43 2 844 921 393 469 4.03e-11 67.8
Msa0333160 AT5G22760.3 40.000 80 43 2 844 921 118 194 4.33e-11 67.8

Find 244 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCTATGTTCAGATTT+TGG 0.097676 2_4:-50802913 Msa0333160:five_prime_UTR
GCAACCTGCAACGGCCTTTA+TGG 0.163393 2_4:+50799409 None:intergenic
AGTCAGAGGCATGTTATTTC+TGG 0.176250 2_4:-50801505 Msa0333160:CDS
TCTTACAAGCTCTGGAAATT+TGG 0.177960 2_4:-50800006 Msa0333160:CDS
ACAGTTCACCCACCAAAATT+AGG 0.181806 2_4:+50802875 None:intergenic
ATTTCGAGAAACCCTAATTT+TGG 0.200841 2_4:-50802887 Msa0333160:five_prime_UTR
TAGATCTAATTCAGATGTTT+TGG 0.230794 2_4:-50801233 Msa0333160:CDS
GATTTACCTCGGATTATCTT+TGG 0.239558 2_4:+50799477 None:intergenic
CACTTCACAGCTTCTATTAC+TGG 0.240006 2_4:+50801644 None:intergenic
CTTACAAACAATACCGTCTT+TGG 0.249129 2_4:+50799215 None:intergenic
AGAGAGAGAAACTCAGAAAA+AGG 0.255905 2_4:-50803054 Msa0333160:five_prime_UTR
CATCATAGAAAACCGATTAA+TGG 0.261943 2_4:-50800126 Msa0333160:CDS
TTCATTCATGCATGTAGATT+TGG 0.263833 2_4:-50802750 Msa0333160:five_prime_UTR
GCCTGTTTGCCGAGCTCTCC+TGG 0.266619 2_4:+50800948 None:intergenic
CTTCGACATACATATCTTCT+TGG 0.269910 2_4:+50800162 None:intergenic
GATCGTCAACCAGGGCATTT+TGG 0.277304 2_4:-50801753 Msa0333160:five_prime_UTR
GGCTTATCAATGGTGGATTA+TGG 0.282618 2_4:-50800486 Msa0333160:CDS
TGCGGGAATTTACAAAAGTT+TGG 0.284793 2_4:-50800664 Msa0333160:CDS
CAGAATTATCTTTAGGGTTT+CGG 0.291247 2_4:+50799259 None:intergenic
TTGTCGGATTTGTGGAAATT+TGG 0.293006 2_4:-50798169 Msa0333160:CDS
TCTCAAACCCCTTGATTTGC+CGG 0.296305 2_4:+50799443 None:intergenic
AGGTTGGAAATTACTACTTT+TGG 0.297926 2_4:+50801196 None:intergenic
ACCCCACCCACCATTATAAA+TGG 0.298016 2_4:+50801680 None:intergenic
TAGTGACAGAATTATCTTTA+GGG 0.301426 2_4:+50799253 None:intergenic
CTTCCCATGTGACTAGCATT+TGG 0.303647 2_4:+50803092 None:intergenic
TTAGTGACAGAATTATCTTT+AGG 0.306142 2_4:+50799252 None:intergenic
AGGCATTTCCTCAGTTCTTA+AGG 0.307406 2_4:+50800877 None:intergenic
AGCAGATATTTCTGTGGTTC+TGG 0.307947 2_4:+50800229 None:intergenic
GGAAGCATCAACGGCCTTCT+AGG 0.311431 2_4:-50800730 Msa0333160:CDS
GGGGATCCTCTTGGTCCAGC+TGG 0.316151 2_4:+50800810 None:intergenic
AGTTTCTAGTAAGGGTAAAA+TGG 0.318918 2_4:-50800378 Msa0333160:CDS
CTCTTTACCTGCTTGTGCAT+TGG 0.321273 2_4:-50800069 Msa0333160:CDS
AGGGTTTCAATCTTCTAATA+TGG 0.322799 2_4:-50800852 Msa0333160:CDS
GTCAGCAATACTCAAGAATA+AGG 0.324948 2_4:-50799508 Msa0333160:CDS
TGCACTAGTCAGCAACAAAA+TGG 0.336556 2_4:-50801617 Msa0333160:exon
CAGTTCACCCACCAAAATTA+GGG 0.345255 2_4:+50802876 None:intergenic
ACGATGTCAGGATGGTCTAT+TGG 0.345468 2_4:-50800752 Msa0333160:CDS
TGTTGAAGAGTCGCAGAAAA+TGG 0.348382 2_4:+50800256 None:intergenic
TTCTTCACAACAGTGATTGA+TGG 0.348517 2_4:+50800911 None:intergenic
TCTTTACCTGCTTGTGCATT+GGG 0.350138 2_4:-50800068 Msa0333160:CDS
ATTTACCTCGGATTATCTTT+GGG 0.353678 2_4:+50799478 None:intergenic
TTTGATGTTCTTACAAGCTC+TGG 0.353731 2_4:-50800014 Msa0333160:CDS
CATTTGGATTTGTCTATTTG+TGG 0.356133 2_4:+50803108 None:intergenic
GTCAGTGAGCAAAAGTAGTA+TGG 0.356687 2_4:-50800099 Msa0333160:CDS
ATCTTCAATATGGCATCTAT+TGG 0.358806 2_4:+50799545 None:intergenic
GGCATTTCCTCAGTTCTTAA+GGG 0.364655 2_4:+50800878 None:intergenic
GCATGTAGATTTGGAGAAAC+TGG 0.366163 2_4:-50802741 Msa0333160:intron
CCTGGCTTGTTTGTCCGCTC+AGG 0.376452 2_4:-50798929 Msa0333160:intron
ATAGATCGTCATCTTCAATA+TGG 0.381281 2_4:+50799535 None:intergenic
TCACTGACATTTCCATTAAT+CGG 0.381706 2_4:+50800114 None:intergenic
CACTTTGCCTCCTTCAAGCT+TGG 0.382263 2_4:-50799089 Msa0333160:CDS
CGATGTCAGGATGGTCTATT+GGG 0.382324 2_4:-50800751 Msa0333160:CDS
GTTATACCACAGTGACATAC+TGG 0.382734 2_4:-50799757 Msa0333160:CDS
GACTCCATCCACCGCCTAGA+AGG 0.382818 2_4:+50800716 None:intergenic
CCCCTCTTCCTCACTGCATT+CGG 0.383952 2_4:+50799899 None:intergenic
TTACTTACAGACACCTCCTT+TGG 0.385712 2_4:+50800992 None:intergenic
AGGAACAAGAAGAAGTTATC+AGG 0.389536 2_4:-50799627 Msa0333160:CDS
AGAAAGCTTAAAAGCCATAA+AGG 0.391365 2_4:-50799423 Msa0333160:CDS
GGAATTCATTGTAGCATTGT+TGG 0.394014 2_4:-50802990 Msa0333160:five_prime_UTR
GGATTCATGTTCAAGGTTGA+TGG 0.394367 2_4:+50801480 None:intergenic
GCCAACATAGCAGCGGTCTC+TGG 0.399885 2_4:+50800506 None:intergenic
AAAGCCATAAAGGCCGTTGC+AGG 0.401617 2_4:-50799413 Msa0333160:CDS
TTCTCCAAGGCTGAATCAAC+TGG 0.404150 2_4:+50800317 None:intergenic
GATGGGAAGAAGTATTATCT+TGG 0.404793 2_4:-50799348 Msa0333160:CDS
TCACATGGGAAGAAAGGATA+TGG 0.406144 2_4:-50803081 Msa0333160:five_prime_UTR
TTGTAGCTTAGTTTCTAGTA+AGG 0.414170 2_4:-50800387 Msa0333160:CDS
TGTAAATCTAAAACAGAAGA+TGG 0.414639 2_4:-50801022 Msa0333160:CDS
CTCAAATTCATTGTCCCAGC+TGG 0.416591 2_4:-50800825 Msa0333160:CDS
AACTGCACTTGTCGGATTTG+TGG 0.417174 2_4:-50798177 Msa0333160:CDS
AGTACATGGTCTTCCTCTAA+TGG 0.417552 2_4:-50799840 Msa0333160:CDS
CCCAGGAGAGCTCGGCAAAC+AGG 0.418100 2_4:-50800949 Msa0333160:CDS
GCATTCCAATGAGACTGCTC+TGG 0.418538 2_4:-50801350 Msa0333160:CDS
TTAGAAGATTGAAACCCTTC+AGG 0.419051 2_4:+50800857 None:intergenic
GTAATGAAAACTCGGTCATA+TGG 0.420439 2_4:-50801426 Msa0333160:CDS
GCCGAGCTCTCCTGGGATAC+AGG 0.421895 2_4:+50800956 None:intergenic
TAATGGAGGGAAGCACAATA+TGG 0.426611 2_4:-50799370 Msa0333160:CDS
TTATGCGATGATAACTTTGA+AGG 0.431195 2_4:-50801589 Msa0333160:CDS
ATGCAGTACCAGTTGCCATC+GGG 0.435695 2_4:+50798201 None:intergenic
CAAAAGAGGAAGCACTTGAA+TGG 0.439006 2_4:+50800033 None:intergenic
GAATTCATTGTAGCATTGTT+GGG 0.439288 2_4:-50802989 Msa0333160:five_prime_UTR
GAGCTAAATCCGGCAAATCA+AGG 0.439675 2_4:-50799452 Msa0333160:CDS
CTATGTATTGAAGCATAACT+TGG 0.442380 2_4:-50801089 Msa0333160:CDS
TACTTACAGACACCTCCTTT+GGG 0.442900 2_4:+50800993 None:intergenic
ATGGGAAGAAGTATTATCTT+GGG 0.444935 2_4:-50799347 Msa0333160:CDS
CAGGAGCTAGCCATTTATAA+TGG 0.445074 2_4:-50801690 Msa0333160:five_prime_UTR
TGCTAGTCACATGGGAAGAA+AGG 0.445547 2_4:-50803087 Msa0333160:five_prime_UTR
AGGAGATCCCCGATGGCAAC+TGG 0.446236 2_4:-50798209 Msa0333160:CDS
TGAATTTGTTTACAGTATGC+AGG 0.447480 2_4:-50801709 Msa0333160:five_prime_UTR
GGGAAAGGACTCTCTTGTCC+TGG 0.450075 2_4:-50799326 Msa0333160:CDS
ACAAAAGTTTGGAGATTATG+TGG 0.451043 2_4:-50800653 Msa0333160:CDS
ACACCCCAGAGCAGTCTCAT+TGG 0.454881 2_4:+50801345 None:intergenic
GAAAGGTCGGTGCTCTGAAA+AGG 0.461188 2_4:-50800433 Msa0333160:CDS
GCCATTTATAATGGTGGGTG+GGG 0.462386 2_4:-50801681 Msa0333160:five_prime_UTR
TCGTTAATTTCTAGAGGAGC+TGG 0.464051 2_4:-50802779 Msa0333160:five_prime_UTR
ATAAGCACGCATCAGAAAAT+CGG 0.464398 2_4:-50799923 Msa0333160:CDS
CCTCCATTACAAGGATTCCT+TGG 0.464662 2_4:+50799384 None:intergenic
AAATGTATAACTACTACAAA+AGG 0.468270 2_4:+50800461 None:intergenic
AAAGGAGGTGTCTGTAAGTA+AGG 0.469927 2_4:-50800990 Msa0333160:CDS
TTGTGCTTCCCTCCATTACA+AGG 0.472119 2_4:+50799375 None:intergenic
GGGATCAACTATTACTGATC+AGG 0.473332 2_4:-50799736 Msa0333160:CDS
AGCTAAATCCGGCAAATCAA+GGG 0.474850 2_4:-50799451 Msa0333160:CDS
TGAAGGAGGCAAAGTGTAAA+GGG 0.475613 2_4:+50799096 None:intergenic
TAATATTGGTCCATTCCTTA+CGG 0.477055 2_4:+50800588 None:intergenic
ATTAATGTCCTCCTCGGAAT+GGG 0.479035 2_4:+50801381 None:intergenic
CATTCCAATGAGACTGCTCT+GGG 0.482728 2_4:-50801349 Msa0333160:CDS
GAATCTGAGTTGGGTAGGGT+AGG 0.483807 2_4:-50802830 Msa0333160:five_prime_UTR
AGAAATGAAGATCGTCAACC+AGG 0.484267 2_4:-50801762 Msa0333160:five_prime_UTR
TCAGAGTTCAAGATTCATGC+TGG 0.484938 2_4:-50799168 Msa0333160:CDS
CACGATATGAAACTGCAGTA+AGG 0.485144 2_4:+50800784 None:intergenic
CTTGAGAATCTGAGTTGGGT+AGG 0.485842 2_4:-50802835 Msa0333160:five_prime_UTR
TGCTCCAGTTGATTCAGCCT+TGG 0.488276 2_4:-50800321 Msa0333160:CDS
AAATTTGGTCATTGATAAAG+AGG 0.488780 2_4:-50798154 Msa0333160:CDS
ATGAAACTGCAGTAAGGGAC+GGG 0.490288 2_4:+50800790 None:intergenic
CATTAATGTCCTCCTCGGAA+TGG 0.491603 2_4:+50801380 None:intergenic
TCCTGTATCCCAGGAGAGCT+CGG 0.492443 2_4:-50800957 Msa0333160:CDS
ATTCAGCTGACCAAGCTTGA+AGG 0.493841 2_4:+50799079 None:intergenic
GTGCAGTTGCTTACGATGTC+AGG 0.495290 2_4:-50800764 Msa0333160:CDS
AAAGGTCGGTGCTCTGAAAA+GGG 0.495460 2_4:-50800432 Msa0333160:CDS
TGAGTTGGGTAGGGTAGGAT+TGG 0.495468 2_4:-50802825 Msa0333160:five_prime_UTR
GCCGTTGCAGGTTGCTGCCA+AGG 0.496197 2_4:-50799401 Msa0333160:CDS
ATTTCTTGAGAATCTGAGTT+GGG 0.497647 2_4:-50802839 Msa0333160:five_prime_UTR
GTCCGAATGCAGTGAGGAAG+AGG 0.497959 2_4:-50799901 Msa0333160:CDS
AAAAGAGGAAGCACTTGAAT+GGG 0.498815 2_4:+50800034 None:intergenic
TTTCAGTGCACTTGATAGAT+CGG 0.504569 2_4:+50800553 None:intergenic
TAAAGATAATTCTGTCACTA+AGG 0.505718 2_4:-50799250 Msa0333160:CDS
AAATGCGGAAGAAGTGCAAA+AGG 0.506972 2_4:-50799803 Msa0333160:CDS
GATAATTCTGTCACTAAGGA+TGG 0.508843 2_4:-50799246 Msa0333160:CDS
CTATGTTGGCTTATCAATGG+TGG 0.510809 2_4:-50800493 Msa0333160:CDS
GCCAGAGACCGCTGCTATGT+TGG 0.513514 2_4:-50800507 Msa0333160:CDS
GTAAGGGACGGGGATCCTCT+TGG 0.515414 2_4:+50800801 None:intergenic
TTGAAGGAGGCAAAGTGTAA+AGG 0.516368 2_4:+50799095 None:intergenic
GGGATCCTCTTGGTCCAGCT+GGG 0.517919 2_4:+50800811 None:intergenic
AGGAAAAGTCAAAATCAAGC+TGG 0.520615 2_4:-50799048 Msa0333160:CDS
TCGTGCGGGATGTGTGGCGA+GGG 0.522169 2_4:-50798994 Msa0333160:CDS
ACATAGCAGCGGTCTCTGGC+TGG 0.522383 2_4:+50800510 None:intergenic
CCTGTTTGCCGAGCTCTCCT+GGG 0.525134 2_4:+50800949 None:intergenic
ACTGCATAAACTGCACTTGT+CGG 0.525485 2_4:-50798185 Msa0333160:CDS
GAAAAGTGCAATGTAACATA+TGG 0.527585 2_4:-50800614 Msa0333160:CDS
ACGGCCTTCTAGGCGGTGGA+TGG 0.528700 2_4:-50800720 Msa0333160:CDS
ATTTATAATGGTGGGTGGGG+TGG 0.529315 2_4:-50801678 Msa0333160:five_prime_UTR
GGAGGGAAGCACAATATGGA+TGG 0.532829 2_4:-50799366 Msa0333160:CDS
CTGCCAAGGAATCCTTGTAA+TGG 0.532876 2_4:-50799387 Msa0333160:CDS
AGTTGCTTCTCCTGTATCCC+AGG 0.534835 2_4:-50800966 Msa0333160:CDS
AGTCTGTAGCAGCACAAGTC+AGG 0.535090 2_4:+50801176 None:intergenic
TCATTCTACAAGACACCAAA+GGG 0.537045 2_4:-50800695 Msa0333160:CDS
TCTTCACAAGATAAACTCTC+TGG 0.537110 2_4:+50801319 None:intergenic
GTCCTGGTTGATTGAGAATG+AGG 0.538570 2_4:-50799310 Msa0333160:CDS
TGTAGCTTAGTTTCTAGTAA+GGG 0.540257 2_4:-50800386 Msa0333160:CDS
TTGAGAATCTGAGTTGGGTA+GGG 0.544766 2_4:-50802834 Msa0333160:five_prime_UTR
GCTTGTAAGAACATCAAAAG+AGG 0.544988 2_4:+50800019 None:intergenic
GGTAAATCTAGAGCTAAATC+CGG 0.545226 2_4:-50799462 Msa0333160:CDS
CATATGGAGGCCGTAAGGAA+TGG 0.545990 2_4:-50800598 Msa0333160:CDS
TATGCAGTACCAGTTGCCAT+CGG 0.546058 2_4:+50798200 None:intergenic
AGATATTTCTGTGGTTCTGG+TGG 0.546610 2_4:+50800232 None:intergenic
AGCCATTTATAATGGTGGGT+GGG 0.547119 2_4:-50801682 Msa0333160:five_prime_UTR
AGCTAGCCATTTATAATGGT+GGG 0.549197 2_4:-50801686 Msa0333160:five_prime_UTR
GGTCAGCTGAATACAAAGCC+AGG 0.551424 2_4:-50799068 Msa0333160:CDS
TTTCTTCAGCCAAAATGCCC+TGG 0.553764 2_4:+50801744 None:intergenic
GAACTGAGGAAATGCCTGAA+GGG 0.554617 2_4:-50800871 Msa0333160:CDS
CAGAGTTCAAGATTCATGCT+GGG 0.555544 2_4:-50799167 Msa0333160:CDS
CAATGCACAAGCAGGTAAAG+AGG 0.560004 2_4:+50800070 None:intergenic
TGCTCTGAAAAGGGGAGAAG+AGG 0.562026 2_4:-50800423 Msa0333160:CDS
CTGCTATGTTGGCTTATCAA+TGG 0.562385 2_4:-50800496 Msa0333160:CDS
GATTTCTTGAGAATCTGAGT+TGG 0.563797 2_4:-50802840 Msa0333160:five_prime_UTR
CCAAGGAATCCTTGTAATGG+AGG 0.564973 2_4:-50799384 Msa0333160:CDS
TGCGGGATGTGTGGCGAGGG+AGG 0.566124 2_4:-50798991 Msa0333160:CDS
TGTTTGTAAGTGTTGCGGTA+AGG 0.566558 2_4:-50799202 Msa0333160:CDS
TCCTTGGCAGCAACCTGCAA+CGG 0.568056 2_4:+50799400 None:intergenic
GGTCTATTGGGAAGCATCAA+CGG 0.572145 2_4:-50800739 Msa0333160:CDS
ATCAACGGCCTTCTAGGCGG+TGG 0.573019 2_4:-50800724 Msa0333160:CDS
TGTAGCAGCACAAGTCAGGT+TGG 0.574525 2_4:+50801180 None:intergenic
ATTTAGCTCTAGATTTACCT+CGG 0.576101 2_4:+50799466 None:intergenic
AGAAGTATTATCTTGGGGAA+AGG 0.579920 2_4:-50799341 Msa0333160:CDS
TCCGAATGCAGTGAGGAAGA+GGG 0.582823 2_4:-50799900 Msa0333160:CDS
GGAAAAGTCAAAATCAAGCT+GGG 0.586183 2_4:-50799047 Msa0333160:CDS
ACGATATGAAACTGCAGTAA+GGG 0.588666 2_4:+50800785 None:intergenic
GTAAATCTAAAACAGAAGAT+GGG 0.588848 2_4:-50801021 Msa0333160:CDS
AAGCTCTGGAAATTTGGACT+CGG 0.589561 2_4:-50800000 Msa0333160:CDS
TTCAAGATTTACCCATTCCG+AGG 0.590028 2_4:-50801392 Msa0333160:CDS
CATAAAAGCAGATATTTCTG+TGG 0.590266 2_4:+50800223 None:intergenic
GTGCTACCCAATGCACAAGC+AGG 0.590716 2_4:+50800062 None:intergenic
GGTATTGTTTGTAAGTGTTG+CGG 0.590744 2_4:-50799207 Msa0333160:CDS
AGAACTGAGGAAATGCCTGA+AGG 0.590783 2_4:-50800872 Msa0333160:CDS
ACAAGCCAGGTGAAAAGTAG+AGG 0.596794 2_4:+50798942 None:intergenic
TAGCCATTTATAATGGTGGG+TGG 0.597091 2_4:-50801683 Msa0333160:five_prime_UTR
GAGCTAGCCATTTATAATGG+TGG 0.598760 2_4:-50801687 Msa0333160:five_prime_UTR
TTCATGAAAAGATTCAAGCA+AGG 0.598939 2_4:+50799129 None:intergenic
TGTAACATATGGAGGCCGTA+AGG 0.604720 2_4:-50800603 Msa0333160:CDS
AAGAGTCGCAGAAAATGGCT+TGG 0.606421 2_4:+50800261 None:intergenic
TGGCTCTAGTAATGAAAACT+CGG 0.607891 2_4:-50801434 Msa0333160:CDS
AAATCCAAATGCTAGTCACA+TGG 0.610342 2_4:-50803096 Msa0333160:five_prime_UTR
GAGGGAAGCACAATATGGAT+GGG 0.610826 2_4:-50799365 Msa0333160:CDS
CAAGGAATCCTTGTAATGGA+GGG 0.611447 2_4:-50799383 Msa0333160:CDS
GATCAGGTGCAGTCACTGAA+TGG 0.612010 2_4:-50799720 Msa0333160:CDS
TCATGAAAAGATTCAAGCAA+GGG 0.612212 2_4:+50799130 None:intergenic
GATTATGTAGTTGACAGTGT+GGG 0.613261 2_4:-50799657 Msa0333160:CDS
GCTTGTAAACAGACATCTGA+CGG 0.615888 2_4:-50800188 Msa0333160:CDS
AATTGCATTAATGTCCTCCT+CGG 0.616551 2_4:+50801375 None:intergenic
CCTGAGCGGACAAACAAGCC+AGG 0.619982 2_4:+50798929 None:intergenic
GTCATTCTACAAGACACCAA+AGG 0.620823 2_4:-50800696 Msa0333160:CDS
TATGAAACTGCAGTAAGGGA+CGG 0.621118 2_4:+50800789 None:intergenic
TGGGAAGAAGTATTATCTTG+GGG 0.622625 2_4:-50799346 Msa0333160:CDS
AGAGGGGAGGAAAATCTCAA+TGG 0.625624 2_4:-50799883 Msa0333160:CDS
AAGTGCAATGTAACATATGG+AGG 0.626670 2_4:-50800611 Msa0333160:CDS
TTATACCACAGTGACATACT+GGG 0.629773 2_4:-50799756 Msa0333160:CDS
TGCAGTACCAGTTGCCATCG+GGG 0.634578 2_4:+50798202 None:intergenic
CAAGCCAGGTGAAAAGTAGA+GGG 0.635588 2_4:+50798943 None:intergenic
GATGATTCGTGCGGGATGTG+TGG 0.636535 2_4:-50799000 Msa0333160:CDS
CAGCTGACCAAGCTTGAAGG+AGG 0.636561 2_4:+50799082 None:intergenic
GACAGAAATGATGATTCGTG+CGG 0.639414 2_4:-50799009 Msa0333160:CDS
TTCGTGCGGGATGTGTGGCG+AGG 0.640997 2_4:-50798995 Msa0333160:CDS
ATTGTCCCAGCTGGACCAAG+AGG 0.642028 2_4:-50800816 Msa0333160:CDS
GAAATGAAGATCGTCAACCA+GGG 0.642148 2_4:-50801761 Msa0333160:five_prime_UTR
TCACTGTGGTATAACATACT+CGG 0.642929 2_4:+50799765 None:intergenic
TTCAACCCAAAGATAATCCG+AGG 0.645039 2_4:-50799483 Msa0333160:CDS
AATCCAAATGCTAGTCACAT+GGG 0.645312 2_4:-50803095 Msa0333160:five_prime_UTR
CCGAATGCAGTGAGGAAGAG+GGG 0.646708 2_4:-50799899 Msa0333160:CDS
GTACATCAGGAGATCCCCGA+TGG 0.647931 2_4:-50798216 Msa0333160:intron
AAGATTTACCCATTCCGAGG+AGG 0.648192 2_4:-50801389 Msa0333160:CDS
AGTTGCTTACGATGTCAGGA+TGG 0.648897 2_4:-50800760 Msa0333160:CDS
TGAGTCTCCCTTAAGAACTG+AGG 0.649252 2_4:-50800885 Msa0333160:CDS
GATGGCAAGATCACCAAAGA+CGG 0.649596 2_4:-50799228 Msa0333160:CDS
TGAAACTGCAGTAAGGGACG+GGG 0.651622 2_4:+50800791 None:intergenic
AGATGGGAACATCCCAAAGG+AGG 0.652411 2_4:-50801005 Msa0333160:CDS
ATGGGTAAATCTTGAAGACG+AGG 0.655489 2_4:+50801399 None:intergenic
ACAGAAATGATGATTCGTGC+GGG 0.656042 2_4:-50799008 Msa0333160:CDS
AGTGTGAGACGTATTCTCCA+AGG 0.656359 2_4:+50800304 None:intergenic
GCTAAATCCGGCAAATCAAG+GGG 0.658194 2_4:-50799450 Msa0333160:CDS
GACCTCATTCTCAATCAACC+AGG 0.658446 2_4:+50799308 None:intergenic
AGCATCAACGGCCTTCTAGG+CGG 0.659757 2_4:-50800727 Msa0333160:CDS
AAGGTCGGTGCTCTGAAAAG+GGG 0.660345 2_4:-50800431 Msa0333160:CDS
AGATTATGTAGTTGACAGTG+TGG 0.662266 2_4:-50799658 Msa0333160:CDS
TCACTGAATGGTGATGTATG+TGG 0.664461 2_4:-50799708 Msa0333160:CDS
ATGTGGCACTCAGACTGTGT+TGG 0.664733 2_4:-50799691 Msa0333160:CDS
TCTGAATTAGATCTACTACA+AGG 0.675132 2_4:+50801241 None:intergenic
AATGCAGTGAGGAAGAGGGG+AGG 0.683933 2_4:-50799896 Msa0333160:CDS
AGAAGATGGGAACATCCCAA+AGG 0.696645 2_4:-50801008 Msa0333160:CDS
TTGATAAGCCAACATAGCAG+CGG 0.700445 2_4:+50800499 None:intergenic
TGGGTAAATCTTGAAGACGA+GGG 0.715551 2_4:+50801400 None:intergenic
AAATCGGTCCGAATGCAGTG+AGG 0.724403 2_4:-50799907 Msa0333160:CDS
CCGAGTGCAACTGACCTGAG+CGG 0.727239 2_4:+50798915 None:intergenic
TTGATCCCAGTATGTCACTG+TGG 0.739707 2_4:+50799751 None:intergenic
ACAGTTGAATCATCTAAACA+CGG 0.740344 2_4:-50801127 Msa0333160:CDS
ATTCCAATGAGACTGCTCTG+GGG 0.741647 2_4:-50801348 Msa0333160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTATTTTACATGAAA+TGG + chr2_4:50799169-50799188 None:intergenic 10.0%
!!! ATTTGTTTAATTTGAAGTTT+TGG - chr2_4:50798529-50798548 Msa0333160:intron 15.0%
!! TGAAAACTTAAAGAAATAAA+TGG - chr2_4:50798975-50798994 Msa0333160:CDS 15.0%
!! TGAAAAACATAAATGAAAAT+TGG - chr2_4:50799017-50799036 Msa0333160:CDS 15.0%
!!! TTTCAAAAAGCTATTTTTTG+AGG - chr2_4:50798249-50798268 Msa0333160:intron 20.0%
!!! ATTTTTTCGTTAATTTCTAG+AGG - chr2_4:50798427-50798446 Msa0333160:intron 20.0%
!!! ATATGATTTTTGTTGCTTAT+TGG - chr2_4:50798672-50798691 Msa0333160:intron 20.0%
!! TTGAAATATGAAGTGAATTA+AGG - chr2_4:50798788-50798807 Msa0333160:intron 20.0%
!! TGAAATATGAAGTGAATTAA+GGG - chr2_4:50798789-50798808 Msa0333160:intron 20.0%
!!! TTTATGTTTTTCATCATAGA+AGG + chr2_4:50799010-50799029 None:intergenic 20.0%
!!! TGATTTTATTTGTGTTTACT+TGG - chr2_4:50799421-50799440 Msa0333160:CDS 20.0%
!!! GATTTTATTTGTGTTTACTT+GGG - chr2_4:50799422-50799441 Msa0333160:CDS 20.0%
!! AAAAACACATTTAAGTCATT+TGG - chr2_4:50799758-50799777 Msa0333160:CDS 20.0%
!! AAATGTATAACTACTACAAA+AGG + chr2_4:50800754-50800773 None:intergenic 20.0%
!!! AGTTATACATTTTGATAGAA+AGG - chr2_4:50800762-50800781 Msa0333160:CDS 20.0%
!!! GCATATTCTTCTAAAAAAAA+GGG - chr2_4:50800856-50800875 Msa0333160:CDS 20.0%
!!! TTCTAAAAAAAAGGGTAAAA+TGG - chr2_4:50800864-50800883 Msa0333160:CDS 20.0%
!! GTATTCTTAAAAAGAAAATG+CGG - chr2_4:50801394-50801413 Msa0333160:CDS 20.0%
!! TTAATTGATATTTGAATGCA+TGG + chr2_4:50802885-50802904 None:intergenic 20.0%
!! TTGTATTGTTTGTATTCTTA+TGG - chr2_4:50802912-50802931 Msa0333160:five_prime_UTR 20.0%
!!! AGTTTGTTTGTTTTCTTCTT+TGG - chr2_4:50798201-50798220 Msa0333160:CDS 25.0%
!!! AAAAAGCTATTTTTTGAGGT+GGG - chr2_4:50798253-50798272 Msa0333160:intron 25.0%
!! TTTCTTCTATGTTCAGATTT+TGG - chr2_4:50798299-50798318 Msa0333160:intron 25.0%
!! TTCTTCTATGTTCAGATTTT+GGG - chr2_4:50798300-50798319 Msa0333160:intron 25.0%
!!! ATTTAGTCTTTGTTGTTGAT+AGG - chr2_4:50798752-50798771 Msa0333160:intron 25.0%
! AATGTAGTTACAAGTTAGTT+AGG - chr2_4:50798866-50798885 Msa0333160:intron 25.0%
!! TATGATGATATTGCTTTGAA+TGG - chr2_4:50799243-50799262 Msa0333160:CDS 25.0%
! TAGTTCAATGAATGCATTAA+TGG - chr2_4:50799271-50799290 Msa0333160:CDS 25.0%
!! AACGAACAATTTCCTTATTT+AGG - chr2_4:50799330-50799349 Msa0333160:CDS 25.0%
! TGCATTTAAACACCTAAATA+AGG + chr2_4:50799345-50799364 None:intergenic 25.0%
! ATATTCTTATGTAGATTCTC+AGG - chr2_4:50799387-50799406 Msa0333160:CDS 25.0%
!! ATTTTTACAGAGGTCTTTTT+TGG - chr2_4:50799665-50799684 Msa0333160:CDS 25.0%
!! TAGATCTAATTCAGATGTTT+TGG - chr2_4:50799979-50799998 Msa0333160:CDS 25.0%
!! AGATCTAATTCAGATGTTTT+GGG - chr2_4:50799980-50799999 Msa0333160:CDS 25.0%
!! TGTAAATCTAAAACAGAAGA+TGG - chr2_4:50800190-50800209 Msa0333160:CDS 25.0%
!! GTAAATCTAAAACAGAAGAT+GGG - chr2_4:50800191-50800210 Msa0333160:CDS 25.0%
!!! ATACATTTTGATAGAAAGGT+CGG - chr2_4:50800766-50800785 Msa0333160:CDS 25.0%
!! GGCATATTCTTCTAAAAAAA+AGG - chr2_4:50800855-50800874 Msa0333160:CDS 25.0%
!!! CTTTTTAAGAATACCATTAG+AGG + chr2_4:50801388-50801407 None:intergenic 25.0%
! TAGTGACAGAATTATCTTTA+GGG + chr2_4:50801962-50801981 None:intergenic 25.0%
! TTAGTGACAGAATTATCTTT+AGG + chr2_4:50801963-50801982 None:intergenic 25.0%
! TAAAGATAATTCTGTCACTA+AGG - chr2_4:50801962-50801981 Msa0333160:intron 25.0%
! GAAAAATTAAACTATCTCCA+GGG + chr2_4:50802519-50802538 None:intergenic 25.0%
! AGAAAAATTAAACTATCTCC+AGG + chr2_4:50802520-50802539 None:intergenic 25.0%
!! TAATTTTTCTGCGTTGTAAT+TGG - chr2_4:50802530-50802549 Msa0333160:intron 25.0%
!! AATTTTTCTGCGTTGTAATT+GGG - chr2_4:50802531-50802550 Msa0333160:intron 25.0%
! AAATTTGGTCATTGATAAAG+AGG - chr2_4:50803058-50803077 Msa0333160:five_prime_UTR 25.0%
GAATTCATTGTAGCATTGTT+GGG - chr2_4:50798223-50798242 Msa0333160:intron 30.0%
!!! CAAAAAGCTATTTTTTGAGG+TGG - chr2_4:50798252-50798271 Msa0333160:intron 30.0%
!!! AAAAGCTATTTTTTGAGGTG+GGG - chr2_4:50798254-50798273 Msa0333160:intron 30.0%
! ATTTCGAGAAACCCTAATTT+TGG - chr2_4:50798325-50798344 Msa0333160:intron 30.0%
ATTTCTTGAGAATCTGAGTT+GGG - chr2_4:50798373-50798392 Msa0333160:intron 30.0%
TTCATTCATGCATGTAGATT+TGG - chr2_4:50798462-50798481 Msa0333160:intron 30.0%
!!! TTTTAGCTTGTGAAGTTTGA+TGG - chr2_4:50798580-50798599 Msa0333160:intron 30.0%
CTATAACTGTAGAGAATCAT+GGG + chr2_4:50798935-50798954 None:intergenic 30.0%
! GTTTTCATTTCTGTATTTGC+TGG + chr2_4:50798962-50798981 None:intergenic 30.0%
!! TTTTGGAAACGTGTTAATTG+TGG - chr2_4:50799214-50799233 Msa0333160:CDS 30.0%
TTTGGAAACGTGTTAATTGT+GGG - chr2_4:50799215-50799234 Msa0333160:CDS 30.0%
ACAAATAAAATCACGTCGTA+CGG + chr2_4:50799414-50799433 None:intergenic 30.0%
! TGAATTTGTTTACAGTATGC+AGG - chr2_4:50799503-50799522 Msa0333160:CDS 30.0%
TTATGCGATGATAACTTTGA+AGG - chr2_4:50799623-50799642 Msa0333160:CDS 30.0%
! AGAAAGACAGATTTTTACAG+AGG - chr2_4:50799655-50799674 Msa0333160:CDS 30.0%
! TGACTTAAATGTGTTTTTCG+TGG + chr2_4:50799756-50799775 None:intergenic 30.0%
TCTGAATTAGATCTACTACA+AGG + chr2_4:50799974-50799993 None:intergenic 30.0%
! AGGTTGGAAATTACTACTTT+TGG + chr2_4:50800019-50800038 None:intergenic 30.0%
ACAGTTGAATCATCTAAACA+CGG - chr2_4:50800085-50800104 Msa0333160:CDS 30.0%
CTATGTATTGAAGCATAACT+TGG - chr2_4:50800123-50800142 Msa0333160:CDS 30.0%
AGGGTTTCAATCTTCTAATA+TGG - chr2_4:50800360-50800379 Msa0333160:CDS 30.0%
ACAAAAGTTTGGAGATTATG+TGG - chr2_4:50800559-50800578 Msa0333160:CDS 30.0%
! ACTTTTCAACAGACAAAAGT+TGG + chr2_4:50800585-50800604 None:intergenic 30.0%
! GAAAAGTGCAATGTAACATA+TGG - chr2_4:50800598-50800617 Msa0333160:CDS 30.0%
TAATATTGGTCCATTCCTTA+CGG + chr2_4:50800627-50800646 None:intergenic 30.0%
!! TTGTAGCTTAGTTTCTAGTA+AGG - chr2_4:50800825-50800844 Msa0333160:CDS 30.0%
!! TGTAGCTTAGTTTCTAGTAA+GGG - chr2_4:50800826-50800845 Msa0333160:CDS 30.0%
!! AGTTTCTAGTAAGGGTAAAA+TGG - chr2_4:50800834-50800853 Msa0333160:CDS 30.0%
! CATAAAAGCAGATATTTCTG+TGG + chr2_4:50800992-50801011 None:intergenic 30.0%
!! AATCGGTTTTCTATGATGTT+TGG + chr2_4:50801084-50801103 None:intergenic 30.0%
CATCATAGAAAACCGATTAA+TGG - chr2_4:50801086-50801105 Msa0333160:CDS 30.0%
TCACTGACATTTCCATTAAT+CGG + chr2_4:50801101-50801120 None:intergenic 30.0%
!! TTTTTGGGAAAGATAGTACA+TGG - chr2_4:50801358-50801377 Msa0333160:CDS 30.0%
! TTGTTTTCTTAATATGTCGC+TGG + chr2_4:50801620-50801639 None:intergenic 30.0%
ATCTTCAATATGGCATCTAT+TGG + chr2_4:50801670-50801689 None:intergenic 30.0%
ATAGATCGTCATCTTCAATA+TGG + chr2_4:50801680-50801699 None:intergenic 30.0%
ATTTACCTCGGATTATCTTT+GGG + chr2_4:50801737-50801756 None:intergenic 30.0%
!! ATTTAGCTCTAGATTTACCT+CGG + chr2_4:50801749-50801768 None:intergenic 30.0%
AGAAAGCTTAAAAGCCATAA+AGG - chr2_4:50801789-50801808 Msa0333160:intron 30.0%
!! ATGGGAAGAAGTATTATCTT+GGG - chr2_4:50801865-50801884 Msa0333160:intron 30.0%
!! CAGAATTATCTTTAGGGTTT+CGG + chr2_4:50801956-50801975 None:intergenic 30.0%
TCATGAAAAGATTCAAGCAA+GGG + chr2_4:50802085-50802104 None:intergenic 30.0%
TTCATGAAAAGATTCAAGCA+AGG + chr2_4:50802086-50802105 None:intergenic 30.0%
! TTGAATCTTTTCATGAAGTC+TGG - chr2_4:50802089-50802108 Msa0333160:intron 30.0%
ACAATTTATCAGCAATGACA+AGG + chr2_4:50802366-50802385 None:intergenic 30.0%
!!! CAAGTGTTTTGCTATTGTAA+AGG + chr2_4:50802471-50802490 None:intergenic 30.0%
ACATGAACGAATCATTATCA+AGG - chr2_4:50802636-50802655 Msa0333160:intron 30.0%
CATGAACGAATCATTATCAA+GGG - chr2_4:50802637-50802656 Msa0333160:intron 30.0%
TGTCAAACATTATGCTATGT+TGG - chr2_4:50802722-50802741 Msa0333160:intron 30.0%
TGCATGGAATAAAAAGAAGT+AGG + chr2_4:50802869-50802888 None:intergenic 30.0%
TTATGGATGTGACTATTGTT+GGG - chr2_4:50802929-50802948 Msa0333160:five_prime_UTR 30.0%
AAATCCAAATGCTAGTCACA+TGG - chr2_4:50798116-50798135 Msa0333160:CDS 35.0%
AATCCAAATGCTAGTCACAT+GGG - chr2_4:50798117-50798136 Msa0333160:CDS 35.0%
AGAGAGAGAAACTCAGAAAA+AGG - chr2_4:50798158-50798177 Msa0333160:CDS 35.0%
GAGAGAGAAACTCAGAAAAA+GGG - chr2_4:50798159-50798178 Msa0333160:CDS 35.0%
GGAATTCATTGTAGCATTGT+TGG - chr2_4:50798222-50798241 Msa0333160:intron 35.0%
GATTTCTTGAGAATCTGAGT+TGG - chr2_4:50798372-50798391 Msa0333160:intron 35.0%
GCTTGAAGATTTATCAATGC+TGG - chr2_4:50798704-50798723 Msa0333160:intron 35.0%
! AAGATTTATCAATGCTGGCT+TGG - chr2_4:50798709-50798728 Msa0333160:intron 35.0%
CCTATAACTGTAGAGAATCA+TGG + chr2_4:50798936-50798955 None:intergenic 35.0%
CCATGATTCTCTACAGTTAT+AGG - chr2_4:50798933-50798952 Msa0333160:CDS 35.0%
TAATATCAATTCCGAGAGAG+AGG - chr2_4:50799050-50799069 Msa0333160:CDS 35.0%
TAGCACTTATCCTAGATTTG+TGG - chr2_4:50799101-50799120 Msa0333160:CDS 35.0%
! CCAAAATTAGCTTAGAGAGA+GGG + chr2_4:50799200-50799219 None:intergenic 35.0%
! TCCAAAATTAGCTTAGAGAG+AGG + chr2_4:50799201-50799220 None:intergenic 35.0%
AGCTAGCCATTTATAATGGT+GGG - chr2_4:50799526-50799545 Msa0333160:CDS 35.0%
! TTTTCGTGGATTCATGTTCA+AGG + chr2_4:50799742-50799761 None:intergenic 35.0%
!! TGGCTCTAGTAATGAAAACT+CGG - chr2_4:50799778-50799797 Msa0333160:CDS 35.0%
GTAATGAAAACTCGGTCATA+TGG - chr2_4:50799786-50799805 Msa0333160:CDS 35.0%
AATTGCATTAATGTCCTCCT+CGG + chr2_4:50799840-50799859 None:intergenic 35.0%
TCTTCACAAGATAAACTCTC+TGG + chr2_4:50799896-50799915 None:intergenic 35.0%
TTCTTCACAACAGTGATTGA+TGG + chr2_4:50800304-50800323 None:intergenic 35.0%
TTAGAAGATTGAAACCCTTC+AGG + chr2_4:50800358-50800377 None:intergenic 35.0%
ACGATATGAAACTGCAGTAA+GGG + chr2_4:50800430-50800449 None:intergenic 35.0%
TCATTCTACAAGACACCAAA+GGG - chr2_4:50800517-50800536 Msa0333160:CDS 35.0%
CACCAAAGGGAAAAATTATG+CGG - chr2_4:50800530-50800549 Msa0333160:CDS 35.0%
ACCAAAGGGAAAAATTATGC+GGG - chr2_4:50800531-50800550 Msa0333160:CDS 35.0%
TGCGGGAATTTACAAAAGTT+TGG - chr2_4:50800548-50800567 Msa0333160:CDS 35.0%
AAGTGCAATGTAACATATGG+AGG - chr2_4:50800601-50800620 Msa0333160:CDS 35.0%
! GGACCAATATTAGCGATTTT+TGG - chr2_4:50800635-50800654 Msa0333160:CDS 35.0%
GGACCAAAAATCGCTAATAT+TGG + chr2_4:50800641-50800660 None:intergenic 35.0%
TTTCAGTGCACTTGATAGAT+CGG + chr2_4:50800662-50800681 None:intergenic 35.0%
CTTCGACATACATATCTTCT+TGG + chr2_4:50801053-50801072 None:intergenic 35.0%
!! AAAAGAGGAAGCACTTGAAT+GGG + chr2_4:50801181-50801200 None:intergenic 35.0%
GCTTGTAAGAACATCAAAAG+AGG + chr2_4:50801196-50801215 None:intergenic 35.0%
TTTGATGTTCTTACAAGCTC+TGG - chr2_4:50801198-50801217 Msa0333160:CDS 35.0%
!! TCTTACAAGCTCTGGAAATT+TGG - chr2_4:50801206-50801225 Msa0333160:CDS 35.0%
ATAAGCACGCATCAGAAAAT+CGG - chr2_4:50801289-50801308 Msa0333160:CDS 35.0%
!! ATCTCAATGGCTTGTGTTTT+TGG - chr2_4:50801342-50801361 Msa0333160:CDS 35.0%
!! TCTCAATGGCTTGTGTTTTT+GGG - chr2_4:50801343-50801362 Msa0333160:CDS 35.0%
TCACTGTGGTATAACATACT+CGG + chr2_4:50801450-50801469 None:intergenic 35.0%
TTATACCACAGTGACATACT+GGG - chr2_4:50801456-50801475 Msa0333160:CDS 35.0%
AGATTATGTAGTTGACAGTG+TGG - chr2_4:50801554-50801573 Msa0333160:CDS 35.0%
GATTATGTAGTTGACAGTGT+GGG - chr2_4:50801555-50801574 Msa0333160:CDS 35.0%
TTGACAGTGTGGGAAAAAAA+AGG - chr2_4:50801565-50801584 Msa0333160:CDS 35.0%
AGGAACAAGAAGAAGTTATC+AGG - chr2_4:50801585-50801604 Msa0333160:CDS 35.0%
GTCAGCAATACTCAAGAATA+AGG - chr2_4:50801704-50801723 Msa0333160:five_prime_UTR 35.0%
GATTTACCTCGGATTATCTT+TGG + chr2_4:50801738-50801757 None:intergenic 35.0%
! GGTAAATCTAGAGCTAAATC+CGG - chr2_4:50801750-50801769 Msa0333160:five_prime_UTR 35.0%
!! GATGGGAAGAAGTATTATCT+TGG - chr2_4:50801864-50801883 Msa0333160:intron 35.0%
!! TGGGAAGAAGTATTATCTTG+GGG - chr2_4:50801866-50801885 Msa0333160:intron 35.0%
!! AGAAGTATTATCTTGGGGAA+AGG - chr2_4:50801871-50801890 Msa0333160:intron 35.0%
GATAATTCTGTCACTAAGGA+TGG - chr2_4:50801966-50801985 Msa0333160:intron 35.0%
CTTACAAACAATACCGTCTT+TGG + chr2_4:50802000-50802019 None:intergenic 35.0%
! GGTATTGTTTGTAAGTGTTG+CGG - chr2_4:50802005-50802024 Msa0333160:intron 35.0%
!!! AGCTTGATTTTGACTTTTCC+TGG + chr2_4:50802165-50802184 None:intergenic 35.0%
AGGAAAAGTCAAAATCAAGC+TGG - chr2_4:50802164-50802183 Msa0333160:intron 35.0%
GGAAAAGTCAAAATCAAGCT+GGG - chr2_4:50802165-50802184 Msa0333160:intron 35.0%
AATTCAAACCTGCTATTGAG+TGG - chr2_4:50802405-50802424 Msa0333160:intron 35.0%
AAGGTGTGTATATGTGAGAA+TGG + chr2_4:50802452-50802471 None:intergenic 35.0%
GTTTGACAGTTCGTTTGTAT+TGG + chr2_4:50802710-50802729 None:intergenic 35.0%
CTTATGGATGTGACTATTGT+TGG - chr2_4:50802928-50802947 Msa0333160:five_prime_UTR 35.0%
! AAACATGTGTCATTCTTCTG+AGG + chr2_4:50802969-50802988 None:intergenic 35.0%
!! ATGTTTTGTTCCTGTACATC+AGG - chr2_4:50802983-50803002 Msa0333160:five_prime_UTR 35.0%
TTGTCGGATTTGTGGAAATT+TGG - chr2_4:50803043-50803062 Msa0333160:five_prime_UTR 35.0%
TCACATGGGAAGAAAGGATA+TGG - chr2_4:50798131-50798150 Msa0333160:CDS 40.0%
! TCGAGAAACCCTAATTTTGG+TGG - chr2_4:50798328-50798347 Msa0333160:intron 40.0%
!! CGAGAAACCCTAATTTTGGT+GGG - chr2_4:50798329-50798348 Msa0333160:intron 40.0%
CAGTTCACCCACCAAAATTA+GGG + chr2_4:50798339-50798358 None:intergenic 40.0%
ACAGTTCACCCACCAAAATT+AGG + chr2_4:50798340-50798359 None:intergenic 40.0%
! TTGAGAATCTGAGTTGGGTA+GGG - chr2_4:50798378-50798397 Msa0333160:intron 40.0%
! TCGTTAATTTCTAGAGGAGC+TGG - chr2_4:50798433-50798452 Msa0333160:intron 40.0%
GCATGTAGATTTGGAGAAAC+TGG - chr2_4:50798471-50798490 Msa0333160:intron 40.0%
GAGATTACACCTACAACTAG+AGG - chr2_4:50798811-50798830 Msa0333160:intron 40.0%
CAGTAACAACCTCTAGTTGT+AGG + chr2_4:50798823-50798842 None:intergenic 40.0%
TTGCATACTCTTCTTCAGAG+AGG + chr2_4:50799079-50799098 None:intergenic 40.0%
! CTAGATTTGTGGACTGCATT+GGG - chr2_4:50799112-50799131 Msa0333160:CDS 40.0%
! CCCTCTCTCTAAGCTAATTT+TGG - chr2_4:50799197-50799216 Msa0333160:CDS 40.0%
AAACGTGTTAATTGTGGGCA+GGG - chr2_4:50799220-50799239 Msa0333160:CDS 40.0%
AGAAATGAAGATCGTCAACC+AGG - chr2_4:50799450-50799469 Msa0333160:CDS 40.0%
GAAATGAAGATCGTCAACCA+GGG - chr2_4:50799451-50799470 Msa0333160:CDS 40.0%
CAGGAGCTAGCCATTTATAA+TGG - chr2_4:50799522-50799541 Msa0333160:CDS 40.0%
GAGCTAGCCATTTATAATGG+TGG - chr2_4:50799525-50799544 Msa0333160:CDS 40.0%
! TAGCCATTTATAATGGTGGG+TGG - chr2_4:50799529-50799548 Msa0333160:CDS 40.0%
!! AGCCATTTATAATGGTGGGT+GGG - chr2_4:50799530-50799549 Msa0333160:CDS 40.0%
CACTTCACAGCTTCTATTAC+TGG + chr2_4:50799571-50799590 None:intergenic 40.0%
TGCACTAGTCAGCAACAAAA+TGG - chr2_4:50799595-50799614 Msa0333160:CDS 40.0%
! ACACTTTTCAGTCTAGTCAG+AGG - chr2_4:50799693-50799712 Msa0333160:CDS 40.0%
!! AGTCAGAGGCATGTTATTTC+TGG - chr2_4:50799707-50799726 Msa0333160:CDS 40.0%
GGATTCATGTTCAAGGTTGA+TGG + chr2_4:50799735-50799754 None:intergenic 40.0%
TGGGTAAATCTTGAAGACGA+GGG + chr2_4:50799815-50799834 None:intergenic 40.0%
ATGGGTAAATCTTGAAGACG+AGG + chr2_4:50799816-50799835 None:intergenic 40.0%
TTCAAGATTTACCCATTCCG+AGG - chr2_4:50799820-50799839 Msa0333160:CDS 40.0%
ATTAATGTCCTCCTCGGAAT+GGG + chr2_4:50799834-50799853 None:intergenic 40.0%
!!! TCAGATGTTTTGGGTTCATC+TGG - chr2_4:50799989-50800008 Msa0333160:CDS 40.0%
TACTTACAGACACCTCCTTT+GGG + chr2_4:50800222-50800241 None:intergenic 40.0%
TTACTTACAGACACCTCCTT+TGG + chr2_4:50800223-50800242 None:intergenic 40.0%
!! AAAGGAGGTGTCTGTAAGTA+AGG - chr2_4:50800222-50800241 Msa0333160:CDS 40.0%
GGCATTTCCTCAGTTCTTAA+GGG + chr2_4:50800337-50800356 None:intergenic 40.0%
AGGCATTTCCTCAGTTCTTA+AGG + chr2_4:50800338-50800357 None:intergenic 40.0%
TATGAAACTGCAGTAAGGGA+CGG + chr2_4:50800426-50800445 None:intergenic 40.0%
CACGATATGAAACTGCAGTA+AGG + chr2_4:50800431-50800450 None:intergenic 40.0%
GTCATTCTACAAGACACCAA+AGG - chr2_4:50800516-50800535 Msa0333160:CDS 40.0%
! TCCCGCATAATTTTTCCCTT+TGG + chr2_4:50800535-50800554 None:intergenic 40.0%
TTGATAAGCCAACATAGCAG+CGG + chr2_4:50800716-50800735 None:intergenic 40.0%
!! CTGCTATGTTGGCTTATCAA+TGG - chr2_4:50800716-50800735 Msa0333160:CDS 40.0%
!! CTATGTTGGCTTATCAATGG+TGG - chr2_4:50800719-50800738 Msa0333160:CDS 40.0%
!! GGCTTATCAATGGTGGATTA+TGG - chr2_4:50800726-50800745 Msa0333160:CDS 40.0%
TGTTGAAGAGTCGCAGAAAA+TGG + chr2_4:50800959-50800978 None:intergenic 40.0%
!! AGATATTTCTGTGGTTCTGG+TGG + chr2_4:50800983-50801002 None:intergenic 40.0%
! AGCAGATATTTCTGTGGTTC+TGG + chr2_4:50800986-50801005 None:intergenic 40.0%
GCTTGTAAACAGACATCTGA+CGG - chr2_4:50801024-50801043 Msa0333160:CDS 40.0%
GTCAGTGAGCAAAAGTAGTA+TGG - chr2_4:50801113-50801132 Msa0333160:CDS 40.0%
TCTTTACCTGCTTGTGCATT+GGG - chr2_4:50801144-50801163 Msa0333160:CDS 40.0%
!! CAAAAGAGGAAGCACTTGAA+TGG + chr2_4:50801182-50801201 None:intergenic 40.0%
!! AAGCTCTGGAAATTTGGACT+CGG - chr2_4:50801212-50801231 Msa0333160:CDS 40.0%
AGTACATGGTCTTCCTCTAA+TGG - chr2_4:50801372-50801391 Msa0333160:CDS 40.0%
! AAATGCGGAAGAAGTGCAAA+AGG - chr2_4:50801409-50801428 Msa0333160:CDS 40.0%
GTTATACCACAGTGACATAC+TGG - chr2_4:50801455-50801474 Msa0333160:CDS 40.0%
GGGATCAACTATTACTGATC+AGG - chr2_4:50801476-50801495 Msa0333160:CDS 40.0%
! TCACTGAATGGTGATGTATG+TGG - chr2_4:50801504-50801523 Msa0333160:CDS 40.0%
TTCAACCCAAAGATAATCCG+AGG - chr2_4:50801729-50801748 Msa0333160:five_prime_UTR 40.0%
AGCTAAATCCGGCAAATCAA+GGG - chr2_4:50801761-50801780 Msa0333160:five_prime_UTR 40.0%
! CAAGGAATCCTTGTAATGGA+GGG - chr2_4:50801829-50801848 Msa0333160:intron 40.0%
! TAATGGAGGGAAGCACAATA+TGG - chr2_4:50801842-50801861 Msa0333160:intron 40.0%
! TGTTTGTAAGTGTTGCGGTA+AGG - chr2_4:50802010-50802029 Msa0333160:intron 40.0%
TCAGAGTTCAAGATTCATGC+TGG - chr2_4:50802044-50802063 Msa0333160:intron 40.0%
CAGAGTTCAAGATTCATGCT+GGG - chr2_4:50802045-50802064 Msa0333160:intron 40.0%
TGAAGGAGGCAAAGTGTAAA+GGG + chr2_4:50802119-50802138 None:intergenic 40.0%
TTGAAGGAGGCAAAGTGTAA+AGG + chr2_4:50802120-50802139 None:intergenic 40.0%
GACAGAAATGATGATTCGTG+CGG - chr2_4:50802203-50802222 Msa0333160:intron 40.0%
ACAGAAATGATGATTCGTGC+GGG - chr2_4:50802204-50802223 Msa0333160:intron 40.0%
TAAACCAACCACTCAATAGC+AGG + chr2_4:50802416-50802435 None:intergenic 40.0%
TCATGTTCTTACAAGCGATG+TGG + chr2_4:50802622-50802641 None:intergenic 40.0%
TTGGCTGTGATTTGATGAGT+AGG - chr2_4:50802741-50802760 Msa0333160:intron 40.0%
CAAGAGAGCGAATATACTCA+TGG + chr2_4:50802769-50802788 None:intergenic 40.0%
AGATAGAGATGTGCATGTGT+TGG + chr2_4:50802830-50802849 None:intergenic 40.0%
ACTGCATAAACTGCACTTGT+CGG - chr2_4:50803027-50803046 Msa0333160:five_prime_UTR 40.0%
CTTCCCATGTGACTAGCATT+TGG + chr2_4:50798123-50798142 None:intergenic 45.0%
TGCTAGTCACATGGGAAGAA+AGG - chr2_4:50798125-50798144 Msa0333160:CDS 45.0%
!! TTGGTGGGTGAACTGTTTTG+TGG - chr2_4:50798344-50798363 Msa0333160:intron 45.0%
! CTTGAGAATCTGAGTTGGGT+AGG - chr2_4:50798377-50798396 Msa0333160:intron 45.0%
CCAATGCAGTCCACAAATCT+AGG + chr2_4:50799114-50799133 None:intergenic 45.0%
! CCTAGATTTGTGGACTGCAT+TGG - chr2_4:50799111-50799130 Msa0333160:CDS 45.0%
GAAACGTGTTAATTGTGGGC+AGG - chr2_4:50799219-50799238 Msa0333160:CDS 45.0%
TTTCTTCAGCCAAAATGCCC+TGG + chr2_4:50799471-50799490 None:intergenic 45.0%
!! GCCATTTATAATGGTGGGTG+GGG - chr2_4:50799531-50799550 Msa0333160:CDS 45.0%
ACCCCACCCACCATTATAAA+TGG + chr2_4:50799535-50799554 None:intergenic 45.0%
!! ATTTATAATGGTGGGTGGGG+TGG - chr2_4:50799534-50799553 Msa0333160:CDS 45.0%
AAGATTTACCCATTCCGAGG+AGG - chr2_4:50799823-50799842 Msa0333160:CDS 45.0%
CATTAATGTCCTCCTCGGAA+TGG + chr2_4:50799835-50799854 None:intergenic 45.0%
CATTCCAATGAGACTGCTCT+GGG - chr2_4:50799863-50799882 Msa0333160:CDS 45.0%
ATTCCAATGAGACTGCTCTG+GGG - chr2_4:50799864-50799883 Msa0333160:CDS 45.0%
AGAAGATGGGAACATCCCAA+AGG - chr2_4:50800204-50800223 Msa0333160:CDS 45.0%
TGAGTCTCCCTTAAGAACTG+AGG - chr2_4:50800327-50800346 Msa0333160:CDS 45.0%
AGAACTGAGGAAATGCCTGA+AGG - chr2_4:50800340-50800359 Msa0333160:CDS 45.0%
GAACTGAGGAAATGCCTGAA+GGG - chr2_4:50800341-50800360 Msa0333160:CDS 45.0%
CTCAAATTCATTGTCCCAGC+TGG - chr2_4:50800387-50800406 Msa0333160:CDS 45.0%
ATGAAACTGCAGTAAGGGAC+GGG + chr2_4:50800425-50800444 None:intergenic 45.0%
AGTTGCTTACGATGTCAGGA+TGG - chr2_4:50800452-50800471 Msa0333160:CDS 45.0%
ACGATGTCAGGATGGTCTAT+TGG - chr2_4:50800460-50800479 Msa0333160:CDS 45.0%
CGATGTCAGGATGGTCTATT+GGG - chr2_4:50800461-50800480 Msa0333160:CDS 45.0%
!! GGTCTATTGGGAAGCATCAA+CGG - chr2_4:50800473-50800492 Msa0333160:CDS 45.0%
TGTAACATATGGAGGCCGTA+AGG - chr2_4:50800609-50800628 Msa0333160:CDS 45.0%
!! AAAGGTCGGTGCTCTGAAAA+GGG - chr2_4:50800780-50800799 Msa0333160:CDS 45.0%
TTCTCCAAGGCTGAATCAAC+TGG + chr2_4:50800898-50800917 None:intergenic 45.0%
AGTGTGAGACGTATTCTCCA+AGG + chr2_4:50800911-50800930 None:intergenic 45.0%
AAGAGTCGCAGAAAATGGCT+TGG + chr2_4:50800954-50800973 None:intergenic 45.0%
CAATGCACAAGCAGGTAAAG+AGG + chr2_4:50801145-50801164 None:intergenic 45.0%
CTCTTTACCTGCTTGTGCAT+TGG - chr2_4:50801143-50801162 Msa0333160:CDS 45.0%
AGAGGGGAGGAAAATCTCAA+TGG - chr2_4:50801329-50801348 Msa0333160:CDS 45.0%
TTGATCCCAGTATGTCACTG+TGG + chr2_4:50801464-50801483 None:intergenic 45.0%
GAGCTAAATCCGGCAAATCA+AGG - chr2_4:50801760-50801779 Msa0333160:five_prime_UTR 45.0%
GCTAAATCCGGCAAATCAAG+GGG - chr2_4:50801762-50801781 Msa0333160:five_prime_UTR 45.0%
!! TCTCAAACCCCTTGATTTGC+CGG + chr2_4:50801772-50801791 None:intergenic 45.0%
CTGCCAAGGAATCCTTGTAA+TGG - chr2_4:50801825-50801844 Msa0333160:intron 45.0%
CCTCCATTACAAGGATTCCT+TGG + chr2_4:50801831-50801850 None:intergenic 45.0%
CCAAGGAATCCTTGTAATGG+AGG - chr2_4:50801828-50801847 Msa0333160:intron 45.0%
TTGTGCTTCCCTCCATTACA+AGG + chr2_4:50801840-50801859 None:intergenic 45.0%
! GAGGGAAGCACAATATGGAT+GGG - chr2_4:50801847-50801866 Msa0333160:intron 45.0%
GTCCTGGTTGATTGAGAATG+AGG - chr2_4:50801902-50801921 Msa0333160:intron 45.0%
GACCTCATTCTCAATCAACC+AGG + chr2_4:50801907-50801926 None:intergenic 45.0%
GATGGCAAGATCACCAAAGA+CGG - chr2_4:50801984-50802003 Msa0333160:intron 45.0%
ATTCAGCTGACCAAGCTTGA+AGG + chr2_4:50802136-50802155 None:intergenic 45.0%
CAAGCCAGGTGAAAAGTAGA+GGG + chr2_4:50802272-50802291 None:intergenic 45.0%
ACAAGCCAGGTGAAAAGTAG+AGG + chr2_4:50802273-50802292 None:intergenic 45.0%
CAAACCTGCTATTGAGTGGT+TGG - chr2_4:50802409-50802428 Msa0333160:intron 45.0%
CTCTCTTGATATAGACCTGC+TGG - chr2_4:50802781-50802800 Msa0333160:five_prime_UTR 45.0%
AGCAATTCATTCATGCCAGC+AGG + chr2_4:50802799-50802818 None:intergenic 45.0%
!! TGTGTCATTCTTCTGAGGCA+GGG + chr2_4:50802964-50802983 None:intergenic 45.0%
!! ATGTGTCATTCTTCTGAGGC+AGG + chr2_4:50802965-50802984 None:intergenic 45.0%
TATGCAGTACCAGTTGCCAT+CGG + chr2_4:50803015-50803034 None:intergenic 45.0%
AACTGCACTTGTCGGATTTG+TGG - chr2_4:50803035-50803054 Msa0333160:five_prime_UTR 45.0%
!!! ATTGTTTTATTTATTTATTT+TGG - chr2_4:50802381-50802400 Msa0333160:intron 5.0%
!!! TTGTTTTATTTATTTATTTT+GGG - chr2_4:50802382-50802401 Msa0333160:intron 5.0%
! GAATCTGAGTTGGGTAGGGT+AGG - chr2_4:50798382-50798401 Msa0333160:intron 50.0%
! TGAGTTGGGTAGGGTAGGAT+TGG - chr2_4:50798387-50798406 Msa0333160:intron 50.0%
!! GATCGTCAACCAGGGCATTT+TGG - chr2_4:50799459-50799478 Msa0333160:CDS 50.0%
GCATTCCAATGAGACTGCTC+TGG - chr2_4:50799862-50799881 Msa0333160:CDS 50.0%
TGTAGCAGCACAAGTCAGGT+TGG + chr2_4:50800035-50800054 None:intergenic 50.0%
AGTCTGTAGCAGCACAAGTC+AGG + chr2_4:50800039-50800058 None:intergenic 50.0%
AGATGGGAACATCCCAAAGG+AGG - chr2_4:50800207-50800226 Msa0333160:CDS 50.0%
AGTTGCTTCTCCTGTATCCC+AGG - chr2_4:50800246-50800265 Msa0333160:CDS 50.0%
TGAAACTGCAGTAAGGGACG+GGG + chr2_4:50800424-50800443 None:intergenic 50.0%
GTGCAGTTGCTTACGATGTC+AGG - chr2_4:50800448-50800467 Msa0333160:CDS 50.0%
CATATGGAGGCCGTAAGGAA+TGG - chr2_4:50800614-50800633 Msa0333160:CDS 50.0%
!! GAAAGGTCGGTGCTCTGAAA+AGG - chr2_4:50800779-50800798 Msa0333160:CDS 50.0%
!! AAGGTCGGTGCTCTGAAAAG+GGG - chr2_4:50800781-50800800 Msa0333160:CDS 50.0%
!! TGCTCTGAAAAGGGGAGAAG+AGG - chr2_4:50800789-50800808 Msa0333160:CDS 50.0%
! TGCTCCAGTTGATTCAGCCT+TGG - chr2_4:50800891-50800910 Msa0333160:CDS 50.0%
AAATCGGTCCGAATGCAGTG+AGG - chr2_4:50801305-50801324 Msa0333160:CDS 50.0%
TCCGAATGCAGTGAGGAAGA+GGG - chr2_4:50801312-50801331 Msa0333160:CDS 50.0%
GATCAGGTGCAGTCACTGAA+TGG - chr2_4:50801492-50801511 Msa0333160:CDS 50.0%
ATGTGGCACTCAGACTGTGT+TGG - chr2_4:50801521-50801540 Msa0333160:CDS 50.0%
AAAGCCATAAAGGCCGTTGC+AGG - chr2_4:50801799-50801818 Msa0333160:intron 50.0%
! GGAGGGAAGCACAATATGGA+TGG - chr2_4:50801846-50801865 Msa0333160:intron 50.0%
CACTTTGCCTCCTTCAAGCT+TGG - chr2_4:50802123-50802142 Msa0333160:intron 50.0%
GGTCAGCTGAATACAAAGCC+AGG - chr2_4:50802144-50802163 Msa0333160:intron 50.0%
!! CTGTCCCTCTACTTTTCACC+TGG - chr2_4:50802265-50802284 Msa0333160:intron 50.0%
ACAAGCGATGTGGCCTATGA+TGG + chr2_4:50802612-50802631 None:intergenic 50.0%
ATGCAGTACCAGTTGCCATC+GGG + chr2_4:50803014-50803033 None:intergenic 50.0%
CAGAGAGGTTGCCTCTCTCT+CGG + chr2_4:50799064-50799083 None:intergenic 55.0%
ACACCCCAGAGCAGTCTCAT+TGG + chr2_4:50799870-50799889 None:intergenic 55.0%
TCCTGTATCCCAGGAGAGCT+CGG - chr2_4:50800255-50800274 Msa0333160:CDS 55.0%
ATTGTCCCAGCTGGACCAAG+AGG - chr2_4:50800396-50800415 Msa0333160:CDS 55.0%
!! GGAAGCATCAACGGCCTTCT+AGG - chr2_4:50800482-50800501 Msa0333160:CDS 55.0%
AGCATCAACGGCCTTCTAGG+CGG - chr2_4:50800485-50800504 Msa0333160:CDS 55.0%
GTGCTACCCAATGCACAAGC+AGG + chr2_4:50801153-50801172 None:intergenic 55.0%
GTCCGAATGCAGTGAGGAAG+AGG - chr2_4:50801311-50801330 Msa0333160:CDS 55.0%
CCCCTCTTCCTCACTGCATT+CGG + chr2_4:50801316-50801335 None:intergenic 55.0%
CCGAATGCAGTGAGGAAGAG+GGG - chr2_4:50801313-50801332 Msa0333160:CDS 55.0%
AATGCAGTGAGGAAGAGGGG+AGG - chr2_4:50801316-50801335 Msa0333160:CDS 55.0%
GCAACCTGCAACGGCCTTTA+TGG + chr2_4:50801806-50801825 None:intergenic 55.0%
TCCTTGGCAGCAACCTGCAA+CGG + chr2_4:50801815-50801834 None:intergenic 55.0%
GGGAAAGGACTCTCTTGTCC+TGG - chr2_4:50801886-50801905 Msa0333160:intron 55.0%
CAGCTGACCAAGCTTGAAGG+AGG + chr2_4:50802133-50802152 None:intergenic 55.0%
GATGATTCGTGCGGGATGTG+TGG - chr2_4:50802212-50802231 Msa0333160:intron 55.0%
TCGGGGATCTCCTGATGTAC+AGG + chr2_4:50802996-50803015 None:intergenic 55.0%
GTACATCAGGAGATCCCCGA+TGG - chr2_4:50802996-50803015 Msa0333160:five_prime_UTR 55.0%
TGCAGTACCAGTTGCCATCG+GGG + chr2_4:50803013-50803032 None:intergenic 55.0%
CCTGTTTGCCGAGCTCTCCT+GGG + chr2_4:50800266-50800285 None:intergenic 60.0%
GGGATCCTCTTGGTCCAGCT+GGG + chr2_4:50800404-50800423 None:intergenic 60.0%
GTAAGGGACGGGGATCCTCT+TGG + chr2_4:50800414-50800433 None:intergenic 60.0%
ATCAACGGCCTTCTAGGCGG+TGG - chr2_4:50800488-50800507 Msa0333160:CDS 60.0%
GACTCCATCCACCGCCTAGA+AGG + chr2_4:50800499-50800518 None:intergenic 60.0%
ACATAGCAGCGGTCTCTGGC+TGG + chr2_4:50800705-50800724 None:intergenic 60.0%
GCCAGAGACCGCTGCTATGT+TGG - chr2_4:50800705-50800724 Msa0333160:CDS 60.0%
GCCAACATAGCAGCGGTCTC+TGG + chr2_4:50800709-50800728 None:intergenic 60.0%
CCTGAGCGGACAAACAAGCC+AGG + chr2_4:50802286-50802305 None:intergenic 60.0%
!! CCTGGCTTGTTTGTCCGCTC+AGG - chr2_4:50802283-50802302 Msa0333160:intron 60.0%
CCGAGTGCAACTGACCTGAG+CGG + chr2_4:50802300-50802319 None:intergenic 60.0%
CCGCTCAGGTCAGTTGCACT+CGG - chr2_4:50802297-50802316 Msa0333160:intron 60.0%
TCCAGGGTTTCGCGCAGGAA+GGG + chr2_4:50802503-50802522 None:intergenic 60.0%
CTATCTCCAGGGTTTCGCGC+AGG + chr2_4:50802508-50802527 None:intergenic 60.0%
AGGAGATCCCCGATGGCAAC+TGG - chr2_4:50803003-50803022 Msa0333160:five_prime_UTR 60.0%
GCCGAGCTCTCCTGGGATAC+AGG + chr2_4:50800259-50800278 None:intergenic 65.0%
CCCAGGAGAGCTCGGCAAAC+AGG - chr2_4:50800263-50800282 Msa0333160:CDS 65.0%
GCCTGTTTGCCGAGCTCTCC+TGG + chr2_4:50800267-50800286 None:intergenic 65.0%
GGGGATCCTCTTGGTCCAGC+TGG + chr2_4:50800405-50800424 None:intergenic 65.0%
ACGGCCTTCTAGGCGGTGGA+TGG - chr2_4:50800492-50800511 Msa0333160:CDS 65.0%
GCCGTTGCAGGTTGCTGCCA+AGG - chr2_4:50801811-50801830 Msa0333160:intron 65.0%
TTCGTGCGGGATGTGTGGCG+AGG - chr2_4:50802217-50802236 Msa0333160:intron 65.0%
TCGTGCGGGATGTGTGGCGA+GGG - chr2_4:50802218-50802237 Msa0333160:intron 65.0%
TCCCTTCCTGCGCGAAACCC+TGG - chr2_4:50802499-50802518 Msa0333160:intron 65.0%
CTCCAGGGTTTCGCGCAGGA+AGG + chr2_4:50802504-50802523 None:intergenic 65.0%
TGCGGGATGTGTGGCGAGGG+AGG - chr2_4:50802221-50802240 Msa0333160:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 50798107 50803127 50798107 ID=Msa0333160;Name=Msa0333160
chr2_4 mRNA 50798107 50803127 50798107 ID=Msa0333160-mRNA-1;Parent=Msa0333160;Name=Msa0333160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=548|1|0.66|1|0.5|0|3|0|938
chr2_4 exon 50798107 50798229 50798107 ID=Msa0333160-mRNA-1:exon:15159;Parent=Msa0333160-mRNA-1
chr2_4 exon 50798930 50801782 50798930 ID=Msa0333160-mRNA-1:exon:15158;Parent=Msa0333160-mRNA-1
chr2_4 exon 50802742 50803127 50802742 ID=Msa0333160-mRNA-1:exon:15157;Parent=Msa0333160-mRNA-1
chr2_4 five_prime_UTR 50802742 50803127 50802742 ID=Msa0333160-mRNA-1:five_prime_utr;Parent=Msa0333160-mRNA-1
chr2_4 five_prime_UTR 50801621 50801782 50801621 ID=Msa0333160-mRNA-1:five_prime_utr;Parent=Msa0333160-mRNA-1
chr2_4 CDS 50798930 50801620 50798930 ID=Msa0333160-mRNA-1:cds;Parent=Msa0333160-mRNA-1
chr2_4 CDS 50798107 50798229 50798107 ID=Msa0333160-mRNA-1:cds;Parent=Msa0333160-mRNA-1
Gene Sequence

>Msa0333160

ATGGAACATTTATGCGATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGGTCTTTTTTGGTGATGACACTTTTCAGTCTAGTCAGAGGCATGTTATTTCTGGAGCCATCAACCTTGAACATGAATCCACGAAAAACACATTTAAGTCATTTGGCTCTAGTAATGAAAACTCGGTCATATGGCGTCCCTCGTCTTCAAGATTTACCCATTCCGAGGAGGACATTAATGCAATTCAGCATTCCAATGAGACTGCTCTGGGGTGTTTGCCAGAGAGTTTATCTTGTGAAGATCAGAATGATGAAAATGTAAATGTCAAATGTATGAAATTTTCTCTGCACGAACTTCCTTGTAGTAGATCTAATTCAGATGTTTTGGGTTCATCTGGAATTCCAAAAGTAGTAATTTCCAACCTGACTTGTGCTGCTACAGACTGTGATAGTGACTCGATTGCATTTCGTACAGTTGAATCATCTAAACACGGTGTGATATCTAGTTGCTATGTATTGAAGCATAACTTGGTACAGAAAATTCATGCTTCTAATGATGATGCAGATGTTACAAATTGTAAATCTAAAACAGAAGATGGGAACATCCCAAAGGAGGTGTCTGTAAGTAAGGCAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAACAGGCTAGTAGTGACGAGTCCATCAATCACTGTTGTGAAGAAGTCTGAGTCTCCCTTAAGAACTGAGGAAATGCCTGAAGGGTTTCAATCTTCTAATATGGTTATCTCAAATTCATTGTCCCAGCTGGACCAAGAGGATCCCCGTCCCTTACTGCAGTTTCATATCGTGCAGTTGCTTACGATGTCAGGATGGTCTATTGGGAAGCATCAACGGCCTTCTAGGCGGTGGATGGAGTCATTCTACAAGACACCAAAGGGAAAAATTATGCGGGAATTTACAAAAGTTTGGAGATTATGTGGCCAACTTTTGTCTGTTGAAAAGTGCAATGTAACATATGGAGGCCGTAAGGAATGGACCAATATTAGCGATTTTTGGTCCGATCTATCAAGTGCACTGAAAAATGTTGAAAAATTAAAAAACCAGCCAGAGACCGCTGCTATGTTGGCTTATCAATGGTGGATTATGGATCCTTTTGTAGTAGTTATACATTTTGATAGAAAGGTCGGTGCTCTGAAAAGGGGAGAAGAGGTTATAAAAGCAAGTTGTAGCTTAGTTTCTAGTAAGGGTAAAATGGCATATTCTTCTAAAAAAAAGGGTAAAATGGCATATGCTCCAGTTGATTCAGCCTTGGAGAATACGTCTCACACTCTTTCTGAGCAAAAGCACGACCAAGCCATTTTCTGCGACTCTTCAACAGCCACCAGAACCACAGAAATATCTGCTTTTATGATAAACAGTCATGCTTGTAAACAGACATCTGACGGTAACCAAGAAGATATGTATGTCGAAGAACATAAACCAAACATCATAGAAAACCGATTAATGGAAATGTCAGTGAGCAAAAGTAGTATGGATCTAGCCTCTTTACCTGCTTGTGCATTGGGTAGCACTGTTACCCATTCAAGTGCTTCCTCTTTTGATGTTCTTACAAGCTCTGGAAATTTGGACTCGGAATCTAAAGTGAATGCTGTTCATCAAGCTAAACTTAGAAATTCTAAAAGCTTTGATAAGCACGCATCAGAAAATCGGTCCGAATGCAGTGAGGAAGAGGGGAGGAAAATCTCAATGGCTTGTGTTTTTGGGAAAGATAGTACATGGTCTTCCTCTAATGGTATTCTTAAAAAGAAAATGCGGAAGAAGTGCAAAAGGATATCTCAAATCAAACCGAGTATGTTATACCACAGTGACATACTGGGATCAACTATTACTGATCAGGTGCAGTCACTGAATGGTGATGTATGTGGCACTCAGACTGTGTTGGAAGAAGTTCAAGATTATGTAGTTGACAGTGTGGGAAAAAAAAGGAACAAGAAGAAGTTATCAGGCAGTGCAAACCAGCGACATATTAAGAAAACAAACTACTCTATTACTGAAACAAATAAGTCCAATAGATGCCATATTGAAGATGACGATCTATTAGTGTCAGCAATACTCAAGAATAAGGACTTCAACCCAAAGATAATCCGAGGTAAATCTAGAGCTAAATCCGGCAAATCAAGGGGTTTGAGAAAGCTTAAAAGCCATAAAGGCCGTTGCAGGTTGCTGCCAAGGAATCCTTGTAATGGAGGGAAGCACAATATGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATGAGGTCATATGTTTAAATGATATCATTCAATACCGAAACCCTAAAGATAATTCTGTCACTAAGGATGGCAAGATCACCAAAGACGGTATTGTTTGTAAGTGTTGCGGTAAGGTGCTTACATTATCAGAGTTCAAGATTCATGCTGGGTTTACACTGAGTCGCCCTTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCCTTTACACTTTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCAAAATCAAGCTGGGAACATTGTTGATAATGACAGAAATGATGATTCGTGCGGGATGTGTGGCGAGGGAGGTGAGCTGATATGTTGTGATAACTGTCCCTCTACTTTTCACCTGGCTTGTTTGTCCGCTCAGGAGATCCCCGATGGCAACTGGTACTGCATAAACTGCACTTGTCGGATTTGTGGAAATTTGGTCATTGATAAAGAGGTTTCAGATGCACATGATTCATCGCAATGTTCACAATGCGAACATAAA
Protein sequence

>Msa0333160

MEHLCDDNFEGSNEERQIFTEVFFGDDTFQSSQRHVISGAINLEHESTKNTFKSFGSSNENSVIWRPSSSRFTHSEEDINAIQHSNETALGCLPESLSCEDQNDENVNVKCMKFSLHELPCSRSNSDVLGSSGIPKVVISNLTCAATDCDSDSIAFRTVESSKHGVISSCYVLKHNLVQKIHASNDDADVTNCKSKTEDGNIPKEVSVSKAVASPVSQESSANRLVVTSPSITVVKKSESPLRTEEMPEGFQSSNMVISNSLSQLDQEDPRPLLQFHIVQLLTMSGWSIGKHQRPSRRWMESFYKTPKGKIMREFTKVWRLCGQLLSVEKCNVTYGGRKEWTNISDFWSDLSSALKNVEKLKNQPETAAMLAYQWWIMDPFVVVIHFDRKVGALKRGEEVIKASCSLVSSKGKMAYSSKKKGKMAYAPVDSALENTSHTLSEQKHDQAIFCDSSTATRTTEISAFMINSHACKQTSDGNQEDMYVEEHKPNIIENRLMEMSVSKSSMDLASLPACALGSTVTHSSASSFDVLTSSGNLDSESKVNAVHQAKLRNSKSFDKHASENRSECSEEEGRKISMACVFGKDSTWSSSNGILKKKMRKKCKRISQIKPSMLYHSDILGSTITDQVQSLNGDVCGTQTVLEEVQDYVVDSVGKKRNKKKLSGSANQRHIKKTNYSITETNKSNRCHIEDDDLLVSAILKNKDFNPKIIRGKSRAKSGKSRGLRKLKSHKGRCRLLPRNPCNGGKHNMDGKKYYLGERTLLSWLIENEVICLNDIIQYRNPKDNSVTKDGKITKDGIVCKCCGKVLTLSEFKIHAGFTLSRPCLNLFMKSGEPFTLCLLQAWSAEYKARKSQNQAGNIVDNDRNDDSCGMCGEGGELICCDNCPSTFHLACLSAQEIPDGNWYCINCTCRICGNLVIDKEVSDAHDSSQCSQCEHK